RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15268
         (256 letters)



>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat.  The HEAT repeat family is
           related to armadillo/beta-catenin-like repeats (see
           pfam00514). These EZ repeats are found in subunits of
           cyanobacterial phycocyanin lyase and other proteins and
           probably carry out a scaffolding role.
          Length = 55

 Score = 29.0 bits (65), Expect = 0.36
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 105 HSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASL 154
            +A+A+ +      E   P +PE + AL  LL+ +D  + +AA      +
Sbjct: 6   AAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55


>gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase
           catalyses the dehydration of galactonate to
           2-keto-3-deoxygalactnate (KDGal), as part of the
           D-galactonate nonphosphorolytic catabolic
           Entner-Doudoroff pathway. D-galactonate dehydratase
           belongs to the enolase superfamily of enzymes,
           characterized by the presence of an enolate anion
           intermediate which is generated by abstraction of the
           alpha-proton of the carboxylate substrate by an active
           site residue and is stabilized by coordination to the
           essential Mg2+ ion.
          Length = 352

 Score = 30.4 bits (69), Expect = 0.94
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)

Query: 104 LHSAMAVVSRLCSKMEP------QDPQLPEAVEALSLLLRHEDTHI 143
           +   MA    L  ++EP      ++P LPE VEAL+ +       I
Sbjct: 187 VSKPMA--KDLAKELEPYRLLFIEEPVLPENVEALAEIAARTTIPI 230


>gnl|CDD|182988 PRK11133, serB, phosphoserine phosphatase; Provisional.
          Length = 322

 Score = 29.9 bits (68), Expect = 1.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 8   ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAI 42
           E V EVT RAM   LD  A   +R+  + GA   I
Sbjct: 138 EEVAEVTERAMRGELDFEASLRQRVATLKGADANI 172


>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport
          and metabolism].
          Length = 212

 Score = 28.4 bits (64), Expect = 2.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 8  ENVLEVTARAMTYYLDVSAECTRRIVAIDGA 38
          E VL +T RAM   LD       R+  + G 
Sbjct: 33 EEVLAITERAMRGELDFEESLRLRVALLKGL 63


>gnl|CDD|221713 pfam12689, Acid_PPase, Acid Phosphatase.  This family contains
          phosphatase enzymes and other proteins of the HAD
          superfamily. It includes MDP-1 which is a eukaryotic
          magnesium-dependent acid phosphatase.
          Length = 164

 Score = 28.3 bits (64), Expect = 2.7
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 51 GIASRTS-KDLAEQCIKVLELICTREAGSVF 80
           +ASRT   D A + +K+L +     A   F
Sbjct: 64 AVASRTDAPDWARELLKLLHINDGPPAIDYF 94


>gnl|CDD|185219 PRK15319, PRK15319, AIDA autotransporter-like protein ShdA;
           Provisional.
          Length = 2039

 Score = 28.5 bits (63), Expect = 4.4
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 164 DPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKAS-SGSVSTI 222
           DP  L      +   I+L + A     NT+L G  V T ++S +L+    ++ +GSV  +
Sbjct: 373 DPIELTDSTFTAPTAIKLGSKATIQAENTTLTGNIVQTDASSSSLSLSQGSTLTGSVDAM 432

Query: 223 VSLLS 227
            + LS
Sbjct: 433 FTTLS 437


>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
           1-carboxyvinyltransferase/cytidine monophosphate kinase;
           Provisional.
          Length = 661

 Score = 28.1 bits (63), Expect = 5.2
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 202 ASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSD 244
            SA GT+       S S+S  V LL+AL  G+ ++  DLL SD
Sbjct: 13  LSAGGTVRLPG---SKSISNRVLLLAALSEGTTTVR-DLLDSD 51


>gnl|CDD|197666 smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control
           protein. 
          Length = 84

 Score = 26.4 bits (59), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 135 LLRHEDTHISDAALRC-FASLSDRFTR 160
           LLR  D  +++ ALR  F+S S  F+R
Sbjct: 45  LLRDTDLSVTEIALRVGFSSQS-YFSR 70


>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
           40 amino acid long tandemly repeated sequence motif
           first identified in the Drosophila segment polarity gene
           armadillo; these repeats were also found in the
           mammalian armadillo homolog beta-catenin, the junctional
           plaque protein plakoglobin, the adenomatous polyposis
           coli (APC) tumor suppressor protein, and a number of
           other proteins. ARM has been implicated in mediating
           protein-protein interactions, but no common features
           among the target proteins recognized by the ARM repeats
           have been identified; related to the HEAT domain; three
           consecutive copies of the repeat are represented by this
           alignment model.
          Length = 120

 Score = 26.9 bits (60), Expect = 6.3
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 10/107 (9%)

Query: 79  VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEA--VEALSLLL 136
           V +AGGL +++  +     +V       A   +S L +        + EA  + AL  LL
Sbjct: 3   VIQAGGLPALVSLLSSSDENV----QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL 58

Query: 137 RHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183
           + ED  +  AAL    +L+        D   +         L+ L +
Sbjct: 59  KSEDEEVVKAALWALRNLAA----GPEDNKLIVLEAGGVPKLVNLLD 101


>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
          Length = 633

 Score = 27.6 bits (61), Expect = 8.0
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 19/108 (17%)

Query: 161 RGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGG--------------ANVSTASASG 206
           R + PA  A       L++R +++ G  P   S+                A +S   ASG
Sbjct: 36  RLLPPAKPAAASRRRRLVLRCASSNGRGPGGESVEDGVKSVERLREEKRRAELSARIASG 95

Query: 207 TLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDAIGCPRI 254
                     G  +T+ + L+ L  G P      L + +    G P+I
Sbjct: 96  EFTV---QKPGFPATLRNGLAKL--GPPGELLAFLFTWVEAGEGYPKI 138


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0805    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,416,369
Number of extensions: 1142928
Number of successful extensions: 1104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1102
Number of HSP's successfully gapped: 34
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)