RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15268
(256 letters)
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 47.7 bits (113), Expect = 1e-06
Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 25/233 (10%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
+ + PE + A A+T ++ T+ +V A+ L S ++
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLY-------TGSVEV 189
Query: 61 AEQCIKVLELICTREAG---SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK 117
EQ I L + V + + +L S + +A +S LC
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN----SNKPSLIRTATWTLSNLCRG 245
Query: 118 MEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLAS 175
+PQ + +A+ L+ L+ DT A + LSD P Q +
Sbjct: 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD-------GPQEAIQAVIDV 298
Query: 176 ELLIRLSNAAGSNPLNTSLGGANVSTASASGT-LATEAKASSGSVSTIVSLLS 227
+ RL +G L T+ ++G + + LLS
Sbjct: 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 47.3 bits (112), Expect = 2e-06
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 24/235 (10%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
L T + +A A+T ++E T+ +V GA+ A S L+ +
Sbjct: 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLA-------SPHAHI 159
Query: 61 AEQCIKVLELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDT-LHSAMAVVSRLCS 116
+EQ + L I + V + G + +L + S L + +S LC
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219
Query: 117 KMEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLA 174
P P + + + L LL H D + + + L+D R + + G+
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI---EMVVKKGVV 276
Query: 175 SEL--LIRLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLS 227
+L L+ + P ++G N+ T + T +G+++ SLL+
Sbjct: 277 PQLVKLLGATELPIVTPALRAIG--NIVTGTDEQTQKV---IDAGALAVFPSLLT 326
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 1e-05
Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 54/214 (25%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAEC-----TRRIVAIDGAMKAICSRLSLGAGIASRT 56
L + ++S C TR D A + +SL + T
Sbjct: 250 LLNVQNAKAWN--------AFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 57 SKDLAEQCIKVLELICT---REA--GSVFEAGGLASVLLFIKQHGHS-------VHKDTL 104
++ +K L+ RE + +A + + G + V+ D L
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCDKL 355
Query: 105 HSAMAV-VSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAAL---------RCFASL 154
+ + ++ L EP + + + + LS+ HI L +
Sbjct: 356 TTIIESSLNVL----EPAEYR--KMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 155 SDRFTRRGV---DPAPLAQ--HGLASELLIRLSN 183
++ + + P + EL ++L N
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Score = 42.1 bits (98), Expect = 1e-04
Identities = 31/243 (12%), Positives = 71/243 (29%), Gaps = 87/243 (35%)
Query: 7 PENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIK 66
+ L++ R L + + V IDG + G+G +T +A
Sbjct: 134 LQPYLKL--RQALLELRPA-----KNVLIDG-VL--------GSG---KTW--VALDVCL 172
Query: 67 VLELICTREAGSVF--EAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ 124
++ C + +F + ++ + + ++ +L +++P
Sbjct: 173 SYKVQCKMDFK-IFWLNLK----------------NCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 125 LPEAVEAL----------------------SLL-LRH-EDTHISDA-ALRC-------FA 152
+ + LL L + ++ +A L C F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 153 SLSDRFTRRGVDPAPLAQH--GL----ASELLIRLSN---------AAGSNPLNTSLGGA 197
++D + L H L LL++ + +NP S+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 198 NVS 200
++
Sbjct: 336 SIR 338
Score = 32.1 bits (72), Expect = 0.20
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 45 RLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSV----H 100
R A AS + + +Q IC + +E + ++L F+ + ++ +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERL-VNAILDFLPKIEENLICSKY 564
Query: 101 KDTLHSAMAVVSRLCSKMEPQDPQLPEAVEAL 132
D L A+ M + EA + +
Sbjct: 565 TDLLRIAL---------MAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 4e-05
Identities = 50/300 (16%), Positives = 81/300 (27%), Gaps = 92/300 (30%)
Query: 3 DDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAE 62
D P E+ + + Y ++S
Sbjct: 50 ADDEPTTPAELVGKFLGY-------------------------------VSSLVEPSKVG 78
Query: 63 QCIKVLELICTREAGSVFEAGG----LASVLLFIKQHGHSVHKDTLHS---AMAVVSRLC 115
Q +VL L E + + G LA+ LL K+ + + A + R
Sbjct: 79 QFDQVLNLC-LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 116 SKMEPQDPQLPEAVEA---------------------LSLLLRHEDTHISDAALRCFASL 154
K + L AV L L + + D +L
Sbjct: 138 DK--KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 155 SDRFTRRGVDPAPLAQHGLASELLIR----------LSNAAGSNPLN--TSLGGAN-VST 201
S+ R +D + GL + L + S PL L A+ V T
Sbjct: 196 SE-LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL--AHYVVT 252
Query: 202 ASASG----TLATEAKASSGSVSTIVSLLSALCRGSPSITSDLLHSDLPDA------IGC 251
A G L + K ++G +V+ + + S S + A IG
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVT--AVAIAETDSWES--FFVSVRKAITVLFFIGV 308
Score = 43.5 bits (102), Expect = 4e-05
Identities = 50/321 (15%), Positives = 93/321 (28%), Gaps = 112/321 (34%)
Query: 13 VTARAMTYYLDVS-AECTRRIVAIDGAMKAICSRLSLGAGIA-SRTSKDLAEQCIKVLEL 70
VTA+ L + E + G + + + IA + + + K + +
Sbjct: 251 VTAKL----LGFTPGELRSYLKGATGHSQGLVT----AVAIAETDSWESFFVSVRKAITV 302
Query: 71 ICTREAGSVFEAGGLASVLLFIKQHGH----------SVHKDTLH------SAMAVVSRL 114
L FI + S+ +D+L S M +S L
Sbjct: 303 ------------------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 115 -----------CSKMEPQDPQL----------------PEAVEALSLLLRHEDTHISDAA 147
+ P Q+ P+++ L+L LR
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA--KAPSGL 402
Query: 148 LRCFASLSDR---FTRRGVDP--AP-----L--AQHGLASELLIRLSNAAGSN---PLNT 192
+ S+R F+ R P +P L A + +L+ + + P+
Sbjct: 403 DQSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 193 SLGGANVSTASASGT---------------LATEAKAS------SGSVSTIVSLLSALCR 231
+ G+++ S S + T+ KA+ G S + L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 232 GSPS--ITSDLLHSDLPDAIG 250
G+ I + L + D G
Sbjct: 522 GTGVRVIVAGTLDINPDDDYG 542
Score = 27.7 bits (61), Expect = 5.5
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 70/177 (39%)
Query: 6 APENVLEVTA---RAMTYYLDVSAECTRRIVAIDGAMKAICSR-----------LSLG-- 49
+ + +L T A+ + A +K S+ SLG
Sbjct: 1721 SEKGLLSATQFTQPAL---TLME-------KAAFEDLK---SKGLIPADATFAGHSLGEY 1767
Query: 50 ---AGIASRTSKDLAEQCIKVLELICTR-----EAGSVFEAG----GLASVLLFIKQHGH 97
A +A + ++E++ R A E G G+ ++ +
Sbjct: 1768 AALASLAD--VMSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN--PGRVAA 1819
Query: 98 SVHKDTLHSAMAVVSRLCSKM-----------EPQDPQL-----PEAVEALSLLLRH 138
S ++ L VV R+ + E Q Q A++ ++ +L
Sbjct: 1820 SFSQEALQ---YVVERVGKRTGWLVEIVNYNVENQ--QYVAAGDLRALDTVTNVLNF 1871
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 40.2 bits (93), Expect = 3e-04
Identities = 23/179 (12%), Positives = 45/179 (25%), Gaps = 16/179 (8%)
Query: 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCI-- 65
E V RA+ Y + A K + S L + + D+ +
Sbjct: 89 EKVTIKALRALGYLVKD---VPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPL 145
Query: 66 ----KVLELICTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ 121
V I L + ++ + ++ +
Sbjct: 146 EDSKLVRTYINELVVSPDLYTKVAGFCLFL-----NMLNSSADSGHLTLILDEIPSLLQN 200
Query: 122 D--PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPAPLAQHGLASELL 178
D + A++ L L L + + D R P + S+L+
Sbjct: 201 DNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLI 259
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 37.2 bits (86), Expect = 0.004
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 16/161 (9%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
L + +A +T ++ TR ++ GA+ LS +D+
Sbjct: 72 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLS-------SEFEDV 123
Query: 61 AEQCIKVLELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK 117
EQ + L I V + L +L + A+ +S LC
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN---AVWALSNLCRG 180
Query: 118 MEPQDP--QLPEAVEALSLLLRHEDTHISDAALRCFASLSD 156
P ++ + LS LL DT + A + LSD
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221
Score = 33.3 bits (76), Expect = 0.073
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 16/153 (10%)
Query: 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKV 67
E+V E A+ S C R V + + S + + +
Sbjct: 121 EDVQEQAVWALGNIAGDSTMC-RDYVLDCNILPPLLQLFS------KQNRLTMTRNAVWA 173
Query: 68 LELICTRE---AGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ 124
L +C + + L + + D L A +S L +
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLL----FVSDTDVLADACWALSYLSDGPNDKIQA 229
Query: 125 LPEA--VEALSLLLRHEDTHISDAALRCFASLS 155
+ +A L LL H D + ALR ++
Sbjct: 230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 36.4 bits (83), Expect = 0.007
Identities = 14/94 (14%), Positives = 28/94 (29%)
Query: 90 LFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALR 149
L ++ G + M +V + + L V L + + D A
Sbjct: 529 LCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACD 588
Query: 150 CFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183
F ++ + R V E+L ++
Sbjct: 589 TFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT 622
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 34.8 bits (80), Expect = 0.028
Identities = 23/153 (15%), Positives = 55/153 (35%), Gaps = 15/153 (9%)
Query: 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKV 67
++VL + L + E + V + G ++ + + L+ +T+
Sbjct: 115 DSVLFYAITTLHN-LLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDC 166
Query: 68 LELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ 124
L+++ S + +GG +++ ++ + + T V+ L +
Sbjct: 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT---TSRVLKVLSVCSSNKPAI 223
Query: 125 LPE-AVEALSLLLRHEDTHISDAALRCFASLSD 156
+ ++AL L L + L +LSD
Sbjct: 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 34.1 bits (77), Expect = 0.050
Identities = 13/94 (13%), Positives = 26/94 (27%)
Query: 90 LFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALR 149
L +K+ G M VV + ++ L + L + + D A
Sbjct: 503 LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD 562
Query: 150 CFASLSDRFTRRGVDPAPLAQHGLASELLIRLSN 183
F + + V P ++ +
Sbjct: 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQK 596
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 33.8 bits (77), Expect = 0.055
Identities = 23/153 (15%), Positives = 55/153 (35%), Gaps = 15/153 (9%)
Query: 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKV 67
++VL + L + E + V + G ++ + + L+ +T+
Sbjct: 112 DSVLFYAITTLHN-LLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDC 163
Query: 68 LELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ 124
L+++ S + +GG +++ ++ + + T V+ L +
Sbjct: 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT---TSRVLKVLSVCSSNKPAI 220
Query: 125 LPE-AVEALSLLLRHEDTHISDAALRCFASLSD 156
+ ++AL L L + L +LSD
Sbjct: 221 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 31.5 bits (71), Expect = 0.29
Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 15/153 (9%)
Query: 8 ENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLAEQCIKV 67
++VL + + L + E + V + G ++ + + L+ +T+
Sbjct: 248 DSVLFHAITTL-HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDC 299
Query: 68 LELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQ 124
L+++ S + +GG +++ ++ + + T V+ L +
Sbjct: 300 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT---TSRVLKVLSVCSSNKPAI 356
Query: 125 LPE-AVEALSLLLRHEDTHISDAALRCFASLSD 156
+ ++AL L L + L +LSD
Sbjct: 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 30.8 bits (69), Expect = 0.35
Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 16/160 (10%)
Query: 2 LDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDLA 61
+ + A+ + A + V GA++ + L +
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGALRKLLRLLD------RDACDTVR 142
Query: 62 EQCIKVLELIC---TREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKM 118
+ + + + G + ++ + + + ++ L
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM----QQQVQKLKVKSAFLLQNLLVGH 198
Query: 119 EPQDPQLPE--AVEALSLLLRHEDTHISDAALRCFASLSD 156
L V+ L L+R E + + L SL
Sbjct: 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 31.3 bits (70), Expect = 0.39
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 72 CTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK-MEPQDPQLPEAVE 130
+V+ L +L +K+ S + V+ + M+ P LPE +
Sbjct: 344 ALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403
Query: 131 ALSLLLRHEDTHISDAALRCFASLSDRF 158
L L + + + +
Sbjct: 404 HLIQCLSDKKALVRSITCWTLSRYAHWV 431
Score = 28.2 bits (62), Expect = 3.2
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 88 VLLFIKQHGHSVHKDTLHSAMAVVSRLCS------KMEPQDPQLPEAVEALSLLLRHEDT 141
+L + S +T A + ++C + D L + +H
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 142 HISDAALRCFASL 154
I A+ C
Sbjct: 189 KIRSHAVACVNQF 201
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 29.4 bits (66), Expect = 1.3
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 9/162 (5%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
+ E+ L+ A+ E I A+DGA+ + L+ + + +
Sbjct: 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 237
Query: 61 AEQCIKVLELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK 117
++ + + + E L ++L +K H ++ + A + L ++
Sbjct: 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN----ACGTLWNLSAR 293
Query: 118 MEPQDPQLPE--AVEALSLLLRHEDTHISDAALRCFASLSDR 157
L + AV L L+ + I+ + +L
Sbjct: 294 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335
Score = 27.1 bits (60), Expect = 6.2
Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 13/154 (8%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
+ +D + A+T + ++ G M+A+ ++L S+DL
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-------KSESEDL 143
Query: 61 AEQCIKVLELICTRE----AGSVFEAGGLAS-VLLFIKQHGHSVHKDTLHSAMAVVSRLC 115
+ VL + R ++ E G + + + ++ S K L SA+ +S C
Sbjct: 144 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL-SALWNLSAHC 202
Query: 116 SKMEPQDPQLPEAVEALSLLLRHEDTHISDAALR 149
++ + + A+ L L + + A +
Sbjct: 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 28.3 bits (64), Expect = 1.8
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 32 IVAI---DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLEL----ICTREAGSVFEAGG 84
I+A+ DG + SR + GA IA+R + K+ + C R +GS +
Sbjct: 12 IMAVTFKDGVILGADSRTTTGAYIANRVTD-------KLTRVHDKIWCCR-SGSAADTQA 63
Query: 85 LASVL-LFIKQHGHSVHKDTLHSAMAVVSRLC 115
+A ++ ++ + + +A +V LC
Sbjct: 64 IADIVQYHLELYTSQYGTPSTETAASVFKELC 95
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 28.3 bits (64), Expect = 2.1
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 32 IVAI---DGAMKAICSRLSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASV 88
+VA+ D A RL + S + + + G + L +
Sbjct: 11 VVAMTGKDCVAIACDLRLGSQSLGVSNKFEKI----FHYGHVFLGI-TGLATDVTTLNEM 65
Query: 89 LLF-IKQHGHSVHKD-TLHSAMAVVSRLC 115
+ + + + +VS
Sbjct: 66 FRYKTNLYKLKEERAIEPETFTQLVSSSL 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 28.0 bits (62), Expect = 3.5
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 9/162 (5%)
Query: 1 MLDDTAPENVLEVTARAMTYYLDVSAECTRRIVAIDGAMKAICSRLSLGAGIASRTSKDL 60
+ E+ L+ A+ E I A+DGA+ + L+ + + +
Sbjct: 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 353
Query: 61 AEQCIKVLELICTREAGS---VFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSK 117
++ + + + E L ++L +K H ++ + A + L ++
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN----ACGTLWNLSAR 409
Query: 118 MEPQDPQLPE--AVEALSLLLRHEDTHISDAALRCFASLSDR 157
L + AV L L+ + I+ + +L
Sbjct: 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E
ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia
coli} PDB: 3naw_A* 3sqv_A
Length = 613
Score = 28.0 bits (62), Expect = 3.6
Identities = 8/66 (12%), Positives = 19/66 (28%)
Query: 180 RLSNAAGSNPLNTSLGGANVSTASASGTLATEAKASSGSVSTIVSLLSALCRGSPSITSD 239
+ + S L + + K S ++ + S SI
Sbjct: 187 NYTKSNKSILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYVKMSLADSFSIHPY 246
Query: 240 LLHSDL 245
L ++++
Sbjct: 247 LNNANI 252
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase,
hydrolase, nuclease, nucleotide-binding, nucleus, RNA-
binding; NMR {Arabidopsis thaliana}
Length = 102
Score = 26.3 bits (58), Expect = 4.7
Identities = 5/21 (23%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 103 TLHSAMAVVSRLCSKMEPQDP 123
+ S+++++ + CS++ P D
Sbjct: 2 SGGSSISMMYKYCSRL-PHDE 21
>3bfq_G Protein FIMG; incomplete IG-like fold, donor strand exchange, cell
project fimbrium, cell adhesion; 1.34A {Escherichia coli
str} PDB: 3bfw_A 3jwn_G
Length = 132
Score = 26.7 bits (59), Expect = 4.9
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 157 RFTRRGVDPAPLAQHGLASELLIRLSNAAGSNPLNTSLGGANVSTASASGTL-------A 209
F+ G A + + L + +G+ + V +S S
Sbjct: 52 SFSGAADSTGYYKNQGTAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALT 111
Query: 210 TEAKASSGSVSTIV 223
A+ G++ ++
Sbjct: 112 VNGGATQGTIQAVI 125
>3mn2_A Probable ARAC family transcriptional regulator; structural
genomics, PSI-2, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 108
Score = 26.0 bits (58), Expect = 5.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 134 LLLRHEDTHISDAALRC-FASLSDRFTRR 161
L T ++ AAL C F++L F R
Sbjct: 63 LSDGATPTTVTAAALSCGFSNLG-HFARD 90
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 26.9 bits (59), Expect = 6.3
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 106 SAMAVVSRLCSKMEPQD---PQLPEAVEALSLLLRHEDTHISDAALRCFASLSDRFTRRG 162
++R ++ +P L +L L D + D++ +L +
Sbjct: 152 ETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211
Query: 163 VDP 165
V P
Sbjct: 212 VTP 214
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 26.4 bits (59), Expect = 8.0
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 78 SVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQDPQLPEA--VEALSLL 135
+V +AG L +++ + + ++ A+ +S + S Q + EA +E L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQE----ALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 136 LRHEDTHISDAALRCFASLS 155
HE+ I A L
Sbjct: 189 QSHENEKIQKEAQEALEKLQ 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.129 0.363
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,704,356
Number of extensions: 218422
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 66
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)