RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15268
         (256 letters)



>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 458

 Score = 34.4 bits (77), Expect = 0.011
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 72  CTREAGSVFEAGGLASVLLFIKQHGHSVHKDTLHSAMAVVSRLCSKMEPQ--DPQLPEAV 129
           C     +  E   +  VL FIK+H  +       +A+     +    EP    P + +A+
Sbjct: 350 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 409

Query: 130 EALSLLLRHEDTHISDAALRCFASLSD 156
             L  L++     + D A      + +
Sbjct: 410 PTLIELMKDPSVVVRDTAAWTVGRICE 436


>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 888

 Score = 31.6 bits (70), Expect = 0.098
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 105 HSAMAVVSRLCSKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASLSDR 157
            +   +++ + SK E Q    P+ +  L  LL  ED +  + A      + + 
Sbjct: 106 ATVGILITTIASKGELQ--NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED 156


>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
           enterocolitica [TaxId: 630]}
          Length = 338

 Score = 25.9 bits (57), Expect = 4.7
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 8/72 (11%)

Query: 82  AGGLASVLLFIKQHGHSVHKDTL--HSAMAVVSRLCSKM--EPQDPQLPEAVEALSLLLR 137
             G+   + F    G ++HK  +   + M     L ++           E + A  +   
Sbjct: 116 RHGVRHSIQFFDHQGDALHKVYVTEQTDMPAWEALLAQFITTENPELQLEPLSAPEV--- 172

Query: 138 HEDTHISDAALR 149
             +   +D A+ 
Sbjct: 173 -TEPTATDEAVD 183


>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
           phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 588

 Score = 25.9 bits (55), Expect = 6.6
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 129 VEALSLLLRHEDTHISDAALRCFASLSDRFTRRGVDPA--PLAQHGLASELLIRLSNAAG 186
           +  L  L   E+T + D A+    ++S   +   ++    PL +     +     ++A G
Sbjct: 89  LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACG 148


>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 321

 Score = 25.2 bits (55), Expect = 8.1
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 21/115 (18%)

Query: 46  LSLGAGIASRTSKDLAEQCIKVLELICTREAGSVFEAGGLASVLLFIKQHGHSV--HKDT 103
           LS  A I ++    +  +  ++ +        +VFE       L  I +       H+  
Sbjct: 95  LSTMAIIVNKLGGHITAEIPQIFD--------AVFE-----CTLNMINKDFEEYPEHRTN 141

Query: 104 LHSAMAVVSRLC----SKMEPQDPQLPEAVEALSLLLRHEDTHISDAALRCFASL 154
               +  V+  C      + P   Q    ++++    +H   +++D  L+   +L
Sbjct: 142 FFLLLQAVNSHCFPAFLAIPPT--QFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 832,985
Number of extensions: 34235
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 10
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)