BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15269
(1858 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 186 bits (472), Expect = 1e-46, Method: Composition-based stats.
Identities = 110/271 (40%), Positives = 149/271 (54%), Gaps = 12/271 (4%)
Query: 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTE 339
H L ++SEGEVYSWG E GKLGHGN RP++I L G V V+AG +HSA VT
Sbjct: 118 HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVTA 176
Query: 340 DGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--VGAVSC--GESHTLVLSQDGHTVW 395
G LYTWG+G +GRLGH D + + P LV L V ++C G++ TL L+ D TVW
Sbjct: 177 AGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD-DTVW 235
Query: 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGL-- 453
S G G+ GKLG + P I++L V KV G+ FSVALT G V+ WG G
Sbjct: 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYH 295
Query: 454 ---RSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFS 510
S P V GL +++ ++ G H + ++ EVY WG N GQ G D +
Sbjct: 296 RLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLG-DGTT 354
Query: 511 NPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
N + +P V L+ V ++ GS ++A++
Sbjct: 355 NAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385
Score = 114 bits (284), Expect = 6e-25, Method: Composition-based stats.
Identities = 95/273 (34%), Positives = 130/273 (47%), Gaps = 18/273 (6%)
Query: 282 LTVTSEGEVYSWGVGEHGKLG--HGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTE 339
L G +Y WG G+LG G + P + L R Q+ G AVT
Sbjct: 14 LYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATL---RPVQLIGGEQTLFAVTA 70
Query: 340 DGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG----AVSCGESHTLVLSQDGHTVW 395
DG LY G G GRLG G +S TPTL+ + V AV+ G H L LS +G V+
Sbjct: 71 DGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE-VY 129
Query: 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGL-- 453
S G GKLGH + P+VIE+LR V V AG + S +T G ++ WG G
Sbjct: 130 SWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYG 189
Query: 454 ---RSSSISFHTPVLVTGLSSHQIVDVSI--GDSHVLALSQYNEVYAWGSNTMGQCGQDN 508
S S P LV L H++VD++ GD+ L L+ + V++WG G+ G+
Sbjct: 190 RLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG 249
Query: 509 FSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
S+ P K+ L + V ++ GS FS+A T
Sbjct: 250 -SDGCKVPMKIDSLTGLGVVKVECGSQFSVALT 281
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 149/285 (52%), Gaps = 21/285 (7%)
Query: 236 STGGLLVYGKGW-----LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288
S G+ VY GW LG N++ PLP + I ++ C ++H L VT EG
Sbjct: 84 SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEG 140
Query: 289 EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348
EV SWG ++G+LG G+T P+ I G R+ V+AG H+AAVTEDG LY WG
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 199
Query: 349 GDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G +G LG GD R P VT + V+CG HT+ +S G +++ G G+LG
Sbjct: 200 GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLG 258
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISF 460
H D P +EAL + ++ G ++ALT DG ++ WG +G+ +++
Sbjct: 259 HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV-GNNLDQ 317
Query: 461 HTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
+PV V ++V VS G H LA+++ N V+AWG T GQ G
Sbjct: 318 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 322 KRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSC 379
++V +SAG SHS A+ ++ +WG G+ G+LGHGD + R +PT ++ L + +V+C
Sbjct: 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 75
Query: 380 GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVA 439
G HT+ SQ G V+S G G+ G+LGH ++ + TP I+AL R++++ G S +A
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 135
Query: 440 LTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEV 493
+T +G V WG LGL + S P + +I V+ G H A+++ ++
Sbjct: 136 VTMEGEVQSWGRNQNGQLGLGDTEDSL-VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 194
Query: 494 YAWGSNTMGQCG 505
Y WG G G
Sbjct: 195 YGWGWGRYGNLG 206
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 188 SKVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPS-NIRHIEAGQFCTFLLDSTGGLLVYGK 245
+V +WG N + Q+ L + ++Q+ I+ + AG T + G L YG
Sbjct: 140 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL--YGW 197
Query: 246 GW-----LGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGK 300
GW LGL + T + +P+RV +S+ C H ++V+ G +Y++G ++G+
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 256
Query: 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK 360
LGHG+ P + L ++Q+S G H+ A+T DG LY WG G++G G+
Sbjct: 257 LGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 361 SRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKV 418
+ +P V D V VSCG HTL +++ + V++ G G G+LG ++ PK+
Sbjct: 316 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVDRNFPKI 374
Query: 419 IEAL 422
IEAL
Sbjct: 375 IEAL 378
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 149/285 (52%), Gaps = 21/285 (7%)
Query: 236 STGGLLVYGKGW-----LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288
S G+ VY GW LG N++ PLP + I ++ C ++H L VT EG
Sbjct: 72 SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEG 128
Query: 289 EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348
EV SWG ++G+LG G+T P+ I G R+ V+AG H+AAVTEDG LY WG
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Query: 349 GDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G +G LG GD R P VT + V+CG HT+ +S G +++ G G+LG
Sbjct: 188 GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLG 246
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISF 460
H D P +EAL + ++ G ++ALT DG ++ WG +G+ +++
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGV-GNNLDQ 305
Query: 461 HTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
+PV V ++V VS G H LA+++ N V+AWG T GQ G
Sbjct: 306 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 322 KRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSC 379
++V +SAG SHS A+ ++ +WG G+ G+LGHGD + R +PT ++ L + +V+C
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 380 GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVA 439
G HT+ SQ G V+S G G+ G+LGH ++ + TP I+AL R++++ G S +A
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 440 LTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEV 493
+T +G V WG LGL + S P + +I V+ G H A+++ ++
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSL-VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 182
Query: 494 YAWGSNTMGQCG 505
Y WG G G
Sbjct: 183 YGWGWGRYGNLG 194
Score = 93.6 bits (231), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 188 SKVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPS-NIRHIEAGQFCTFLLDSTGGLLVYGK 245
+V +WG N + Q+ L + ++Q+ I+ + AG T + G L YG
Sbjct: 128 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL--YGW 185
Query: 246 GW-----LGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGK 300
GW LGL + T + +P+RV +S+ C H ++V+ G +Y++G ++G+
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 244
Query: 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK 360
LGHG+ P + L ++Q+S G H+ A+T DG LY WG G++G G+
Sbjct: 245 LGHGDLEDHLIPHKLEA-LSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 361 SRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKV 418
+ +P V D V VSCG HTL +++ + V++ G G G+LG ++ PK+
Sbjct: 304 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVDRNFPKI 362
Query: 419 IEAL 422
IEAL
Sbjct: 363 IEAL 366
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 149/285 (52%), Gaps = 21/285 (7%)
Query: 236 STGGLLVYGKGW-----LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288
S G+ VY GW LG N++ PLP + I ++ C ++H L VT EG
Sbjct: 72 SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEG 128
Query: 289 EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348
EV SWG ++G+LG G+T P+ I G R+ V+AG H+AAVTEDG LY WG
Sbjct: 129 EVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Query: 349 GDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G +G LG GD R P VT + V+CG HT+ +S G +++ G G+LG
Sbjct: 188 GRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLG 246
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISF 460
H D P +EAL + ++ G ++ALT DG ++ WG +G+ +++
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV-GNNLDQ 305
Query: 461 HTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
+PV V ++V VS G H LA+++ N V+AWG T GQ G
Sbjct: 306 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 322 KRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSC 379
++V +SAG SHS A+ ++ +WG G+ G+LGHGD + R +PT ++ L + +V+C
Sbjct: 4 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 380 GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVA 439
G HT+ SQ G V+S G G+ G+LGH ++ + TP I+AL R++++ G S +A
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 440 LTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEV 493
+T +G V WG LGL + S P + +I V+ G H A+++ ++
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSL-VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 182
Query: 494 YAWGSNTMGQCG 505
Y WG G G
Sbjct: 183 YGWGWGRYGNLG 194
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 188 SKVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPS-NIRHIEAGQFCTFLLDSTGGLLVYGK 245
+V +WG N + Q+ L + ++Q+ I+ + AG T + G L YG
Sbjct: 128 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL--YGW 185
Query: 246 GW-----LGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGK 300
GW LGL + T + +P+RV +S+ C H ++V+ G +Y++G ++G+
Sbjct: 186 GWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTISVSYSGALYTYGWSKYGQ 244
Query: 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK 360
LGHG+ P + L ++Q+S G H+ A+T DG LY WG G++G G+
Sbjct: 245 LGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 303
Query: 361 SRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKV 418
+ +P V D V VSCG HTL +++ + V++ G G G+LG ++ PK+
Sbjct: 304 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVDRNFPKI 362
Query: 419 IEAL 422
IEAL
Sbjct: 363 IEAL 366
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 146/285 (51%), Gaps = 21/285 (7%)
Query: 236 STGGLLVYGKGW-----LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288
S G VY GW LG N++ PLP + I ++ C ++H L VT EG
Sbjct: 74 SQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTXEG 130
Query: 289 EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348
EV SWG ++G+LG G+T P+ I G R+ V+AG H+AAVTEDG LY WG
Sbjct: 131 EVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKXVAAGAEHTAAVTEDGDLYGWGW 189
Query: 349 GDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G +G LG GD R P VT V+CG HT+ +S G +++ G G+LG
Sbjct: 190 GRYGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSG-ALYTYGWSKYGQLG 248
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISF 460
H D P +EAL + ++ G + ALT DG ++ WG +G+ +++
Sbjct: 249 HGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGV-GNNLDQ 307
Query: 461 HTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
+PV V ++V VS G H LA+++ N V+AWG T GQ G
Sbjct: 308 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 352
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 322 KRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSC 379
++V +SAG SHS A+ ++ +WG G+ G+LGHGD + R +PT ++ L + +V+C
Sbjct: 6 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 65
Query: 380 GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVA 439
G HT+ SQ G V+S G G+ G+LGH ++ + TP I+AL R++++ G S +A
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 125
Query: 440 LTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEV 493
+T +G V WG LGL + S P + +I V+ G H A+++ ++
Sbjct: 126 VTXEGEVQSWGRNQNGQLGLGDTEDSL-VPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDL 184
Query: 494 YAWGSNTMGQCG 505
Y WG G G
Sbjct: 185 YGWGWGRYGNLG 196
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 14/244 (5%)
Query: 188 SKVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPS-NIRHIEAGQFCTFLLDSTGGLLVYGK 245
+V +WG N + Q+ L + ++Q+ I+ + AG T + G L YG
Sbjct: 130 GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDL--YGW 187
Query: 246 GW-----LGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGK 300
GW LGL + T + +P+RV V+ C H ++V+ G +Y++G ++G+
Sbjct: 188 GWGRYGNLGLGDRTDRLVPERVTSTGGEKXSXVA-CGWRHTISVSYSGALYTYGWSKYGQ 246
Query: 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK 360
LGHG+ P + L ++Q+S G H+ A+T DG LY WG G++G G+
Sbjct: 247 LGHGDLEDHLIPHKLEA-LSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNL 305
Query: 361 SRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKV 418
+ +P V D V VSCG HTL +++ + V++ G G G+LG ++ PK+
Sbjct: 306 DQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGESVDRNFPKI 364
Query: 419 IEAL 422
IEAL
Sbjct: 365 IEAL 368
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 332 SHSAAVTEDGLLYTWGEGDHGRLGHGD-LKSRHTPTLVTELSDVGAVSCGESHTLVLSQD 390
SH + TE GL+ T G+GD G+LG G+ + R P LV+ DV G HT+ LS+
Sbjct: 18 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKS 77
Query: 391 GHTVWSMGSGNLGKLGHEDT--GKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFW 448
G V+S G + G LG + + G P +E K V +V AG S + ALT DG VF
Sbjct: 78 GQ-VYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK--VVQVSAGDSHTAALTDDGRVFL 134
Query: 449 WG--------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500
WG +GL PV V +V V+ G+ H++ L+ ++Y G
Sbjct: 135 WGSFRDNNGVIGLLEPMKKSMVPVQVQ--LDVPVVKVASGNDHLVMLTADGDLYTLGCGE 192
Query: 501 MGQCGQ 506
GQ G+
Sbjct: 193 QGQLGR 198
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 147/341 (43%), Gaps = 43/341 (12%)
Query: 188 SKVYTWGCNLHHQILDE--VRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG- 244
+VY++GCN + + V G P L + + AG T L G + ++G
Sbjct: 78 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 245 ----KGWLGLANTTIQPL-PKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299
G +GL + + P +V L+ +V ++ H++ +T++G++Y+ G GE G
Sbjct: 138 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVA---SGNDHLVMLTADGDLYTLGCGEQG 194
Query: 300 KLGHGNTLSQRR-----------PKLIM----GGLYGKRVTQVSAGHSHSAAVTEDGLLY 344
+LG L R PK +M G R G + A++ +G +Y
Sbjct: 195 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 254
Query: 345 TWGEGDHGRLGHGDLKSRHTPTLVTELSD-----VGAVSCGESHTLVLSQDGHTVWSMGS 399
+G ++ +LG +S P +T + VG S G+ HT+ + +G +S+G
Sbjct: 255 GFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG-FSGGQHHTVCMDSEGKA-YSLGR 312
Query: 400 GNLGKLG-HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLR---- 454
G+LG E + + P +I L V V G S A+T DG VF WG+G
Sbjct: 313 AEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLG 370
Query: 455 -SSSISFHTPVLVTG--LSSHQIVDVSIGDSHVLALSQYNE 492
+PV + G L + ++ VS G H + L + E
Sbjct: 371 TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 411
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 157/367 (42%), Gaps = 52/367 (14%)
Query: 211 RPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG---KGWLGLANTTIQP---LPKRVPL 264
+P L S+P ++ EAG T L +G + +G +G LG +T+++ +P +V L
Sbjct: 51 KPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG-RDTSVEGSEMVPGKVEL 109
Query: 265 EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRV 324
+ +V +S ++H +T +G V+ WG G ++ + + V
Sbjct: 110 QEKVVQVSAG---DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPV 166
Query: 325 TQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGH--------GD--------------LKSR 362
+V++G+ H +T DG LYT G G+ G+LG G LKSR
Sbjct: 167 VKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSR 226
Query: 363 HTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422
+ V D CG T +S +GH V+ G N +LG T P+ + +
Sbjct: 227 GSRGHV-RFQDA---FCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIPQNLTSF 281
Query: 423 RKFRVRKV--CAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQI 474
+ V G +V + +G + G LGL + P L++ L + +
Sbjct: 282 KNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--V 339
Query: 475 VDVSIGDSHVLALSQYNEVYAWGSNTMGQ--CGQDNFS-NPVDQPSKVVGLEDVCVRQIC 531
V+ G S A+++ V+AWG T Q GQD + +PV+ K LE+ V +
Sbjct: 340 SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ--LENRVVLSVS 397
Query: 532 AGSLFSI 538
+G ++
Sbjct: 398 SGGQHTV 404
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 246 GWLGLA-NTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHG 304
G LGL N + P V + +V ++ H + ++ G+VYS+G + G LG
Sbjct: 38 GQLGLGENVMERKKPALVSIPEDVVQ---AEAGGMHTVCLSKSGQVYSFGCNDEGALGRD 94
Query: 305 NTL--SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG--EGDHGRLGHGD-L 359
++ S+ P + ++V QVSAG SH+AA+T+DG ++ WG ++G +G + +
Sbjct: 95 TSVEGSEMVPGKVE---LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM 151
Query: 360 KSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL-----------GHE 408
K P V V V+ G H ++L+ DG ++++G G G+L G +
Sbjct: 152 KKSMVPVQVQLDVPVVKVASGNDHLVMLTADG-DLYTLGCGEQGQLGRVPELFANRGGRQ 210
Query: 409 DTGKVTTPKVIEALRK-----FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSS 457
++ PK + + R + G F+ A++ +G V+ +G LG +
Sbjct: 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE 270
Query: 458 ISFHTPVLVTGL--SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
F P +T S+ V S G H + + + Y+ G G+ G
Sbjct: 271 SCF-IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG 319
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 16/186 (8%)
Query: 332 SHSAAVTEDGLLYTWGEGDHGRLGHGD-LKSRHTPTLVTELSDVGAVSCGESHTLVLSQD 390
SH + TE GL+ T G+GD G+LG G+ + R P LV+ DV G HT+ LS+
Sbjct: 7 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKS 66
Query: 391 GHTVWSMGSGNLGKLGHEDT--GKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFW 448
G V+S G + G LG + + G P +E K V +V AG S + ALT DG VF
Sbjct: 67 GQ-VYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK--VVQVSAGDSHTAALTDDGRVFL 123
Query: 449 WG--------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500
WG +GL PV V +V V+ G+ H++ L+ ++Y G
Sbjct: 124 WGSFRDNNGVIGLLEPMKKSMVPVQVQ--LDVPVVKVASGNDHLVMLTADGDLYTLGCGE 181
Query: 501 MGQCGQ 506
GQ G+
Sbjct: 182 QGQLGR 187
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 147/341 (43%), Gaps = 43/341 (12%)
Query: 188 SKVYTWGCNLHHQILDE--VRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG- 244
+VY++GCN + + V G P L + + AG T L G + ++G
Sbjct: 67 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 126
Query: 245 ----KGWLGLANTTIQPL-PKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299
G +GL + + P +V L+ +V ++ H++ +T++G++Y+ G GE G
Sbjct: 127 FRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVA---SGNDHLVMLTADGDLYTLGCGEQG 183
Query: 300 KLGHGNTLSQRR-----------PKLIM----GGLYGKRVTQVSAGHSHSAAVTEDGLLY 344
+LG L R PK +M G R G + A++ +G +Y
Sbjct: 184 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVY 243
Query: 345 TWGEGDHGRLGHGDLKSRHTPTLVTELSD-----VGAVSCGESHTLVLSQDGHTVWSMGS 399
+G ++ +LG +S P +T + VG S G+ HT+ + +G +S+G
Sbjct: 244 GFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG-FSGGQHHTVCMDSEG-KAYSLGR 301
Query: 400 GNLGKLG-HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLR---- 454
G+LG E + + P +I L V V G S A+T DG VF WG+G
Sbjct: 302 AEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLG 359
Query: 455 -SSSISFHTPVLVTG--LSSHQIVDVSIGDSHVLALSQYNE 492
+PV + G L + ++ VS G H + L + E
Sbjct: 360 TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKE 400
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 78/380 (20%)
Query: 211 RPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG---KGWLGLANTTIQP---LPKRVPL 264
+P L S+P ++ EAG T L +G + +G +G LG +T+++ +P +V L
Sbjct: 40 KPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG-RDTSVEGSEMVPGKVEL 98
Query: 265 EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKR- 323
+ +V +S ++H +T +G V+ WG S R ++G L +
Sbjct: 99 QEKVVQVSAG---DSHTAALTDDGRVFLWG-------------SFRDNNGVIGLLEPMKK 142
Query: 324 ------------VTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGH--------GD----- 358
V +V++G+ H +T DG LYT G G+ G+LG G
Sbjct: 143 SMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 202
Query: 359 ---------LKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHED 409
LKSR + V D CG T +S +GH V+ G N +LG
Sbjct: 203 RLLVPKCVMLKSRGSRGHV-RFQDA---FCGAYFTFAISHEGH-VYGFGLSNYHQLGTPG 257
Query: 410 TGKVTTPKVIEALRKFRVRKV--CAGTSFSVALTWDGLVFWWG------LGLRSSSISFH 461
T P+ + + + V G +V + +G + G LGL +
Sbjct: 258 TESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS 317
Query: 462 TPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQ--CGQDNFS-NPVDQPSK 518
P L++ L + + V+ G S A+++ V+AWG T Q GQD + +PV+ K
Sbjct: 318 IPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 375
Query: 519 VVGLEDVCVRQICAGSLFSI 538
LE+ V + +G ++
Sbjct: 376 Q--LENRVVLSVSSGGQHTV 393
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 130/290 (44%), Gaps = 38/290 (13%)
Query: 246 GWLGLA-NTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHG 304
G LGL N + P V + +V ++ H + ++ G+VYS+G + G LG
Sbjct: 27 GQLGLGENVMERKKPALVSIPEDVVQ---AEAGGMHTVCLSKSGQVYSFGCNDEGALGRD 83
Query: 305 NTL--SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG--EGDHGRLGHGD-L 359
++ S+ P + ++V QVSAG SH+AA+T+DG ++ WG ++G +G + +
Sbjct: 84 TSVEGSEMVPGKVE---LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM 140
Query: 360 KSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL-----------GHE 408
K P V V V+ G H ++L+ DG ++++G G G+L G +
Sbjct: 141 KKSMVPVQVQLDVPVVKVASGNDHLVMLTADG-DLYTLGCGEQGQLGRVPELFANRGGRQ 199
Query: 409 DTGKVTTPKVIEALRK-----FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSS 457
++ PK + + R + G F+ A++ +G V+ +G LG +
Sbjct: 200 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE 259
Query: 458 ISFHTPVLVTGL--SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
F P +T S+ V S G H + + + Y+ G G+ G
Sbjct: 260 SCF-IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLG 308
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 30/221 (13%)
Query: 255 IQPLPKRVPL--EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRP 312
IQ P +VP + IV L+ K H+L + EG V++WG G+ +LG + + R
Sbjct: 191 IQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEEGMVFAWGNGQQNQLGR-KVMERFRL 246
Query: 313 KLIMGGLYGKR-VTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG------HGDLKSRHTP 365
K + +G R V +++G +H A+T+D L +WG G+ G G L ++
Sbjct: 247 KTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKR 306
Query: 366 TLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG--------------HEDTG 411
+ + + +++ GE H+L+LSQDG ++S G ++ ++G H
Sbjct: 307 LALPDNVVIRSIAAGEHHSLILSQDG-DLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKAR 365
Query: 412 KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLG 452
V P + + KF + V AG+ SVA+ +G+ + WG G
Sbjct: 366 AVPLPTKLNNVPKF--KSVAAGSHHSVAVAQNGIAYSWGFG 404
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 123/290 (42%), Gaps = 30/290 (10%)
Query: 286 SEGEVYSWGVGE--HGKLG-HGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGL 342
S GEVY+WG G LG + + + ++ + + Q++ G H + E+G+
Sbjct: 165 SNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM 224
Query: 343 LYTWGEGDHGRLGHGDLKSRHTPTLVTE---LSDVGAVSCGESHTLVLSQDGHTVWSMGS 399
++ WG G +LG ++ TL L V ++ GE+H L++D V S G
Sbjct: 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLV-SWGL 283
Query: 400 GNLGKLG----HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG----- 450
G+ G ED VT PK + +R + AG S+ L+ DG ++ G
Sbjct: 284 NQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMF 343
Query: 451 -LGLRSSSISFHTPVLVTGLSSH-----------QIVDVSIGDSHVLALSQYNEVYAWGS 498
+G+ ++ +T V G + + V+ G H +A++Q Y+WG
Sbjct: 344 EVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGF 403
Query: 499 NTMGQCGQDNFSNPVDQPSKV--VGLEDVCVRQICAGSLFSIAYTVPPSN 546
G F + + P+++ +D + + G FS++ V S+
Sbjct: 404 GETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKLSD 453
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 47/297 (15%)
Query: 289 EVYSWGVGEHGKLGHG---NTLSQRRPKL-IMGGLYGKRVTQVSAGHSHSAAVTEDGLLY 344
+++ WG G +LG G +RP+L ++ + G H+ A+ E+ ++
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 345 TWGEGDHGRLGHGDLKSRH-----------------------TPTLV--------TELSD 373
+WG D G LG ++ TP + E
Sbjct: 90 SWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHK 149
Query: 374 VGAVSCGESHTLVLSQDGHT-VWSMGSGNLGKLG-HEDTGKV-TTPKVIEALRKFRVRKV 430
V ++ ++ + L +G W N G LG ++D K+ TP + K+ + ++
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQL 209
Query: 431 CAGTSFSVALTWDGLVFWWGLGL-----RSSSISFHTPVL-VTGLSSHQIVDVSIGDSHV 484
G + L +G+VF WG G R F L + ++ G++H
Sbjct: 210 APGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHC 269
Query: 485 LALSQYNEVYAWGSNTMGQCG-QDNFSNP--VDQPSKVVGLEDVCVRQICAGSLFSI 538
AL++ N++ +WG N GQCG ++ + V +P ++ ++V +R I AG S+
Sbjct: 270 FALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSL 326
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 33/220 (15%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIE---AGQFCTFLLDSTGGLLVYGKG 246
V+ WG +Q+ +V + L P +RH++ +G+ F L L+ +G
Sbjct: 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLN 284
Query: 247 WLG-------LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299
G + + + PKR+ L +V S++ E H L ++ +G++YS G +
Sbjct: 285 QFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA-AGEHHSLILSQDGDLYSCGRLDMF 343
Query: 300 KLGHGNTLSQRRPKLIMGGLYGK--------------RVTQVSAGHSHSAAVTEDGLLYT 345
++G P+ ++GK + V+AG HS AV ++G+ Y+
Sbjct: 344 EVG---IPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYS 400
Query: 346 WGEGDHGRLGHGDLKSR-HTPTLV----TELSDVGAVSCG 380
WG G+ +G G + PT + T+ ++ V CG
Sbjct: 401 WGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCG 440
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 134/343 (39%), Gaps = 81/343 (23%)
Query: 238 GGLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWG 294
G +LV G G LGL ++ KR+ A I H L +T G++YS+G
Sbjct: 43 GNVLVCGNGDVGQLGLGEDILER--KRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFG 100
Query: 295 VGEHGKLGHGNTL--SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG--EGD 350
+ G LG + S+ +P LI L GK + +SAG SHSA + EDG ++ WG
Sbjct: 101 CNDEGALGRDTSEDGSESKPDLI--DLPGKALC-ISAGDSHSACLLEDGRVFAWGSFRDS 157
Query: 351 HGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGH--TVWSMGSGNLGKL--- 405
HG +G ++ TP + E + +++ G H ++L+ G TV G LG+L
Sbjct: 158 HGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSER 217
Query: 406 ---GHEDTGK----------VTTPKVIEA----------------------LRKFR---- 426
G GK +T K EA L F+
Sbjct: 218 SISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAH 277
Query: 427 ------------------VRKVCAGTSFSVALTWD------GLVFWWGLGLRSSSISFHT 462
+R + G +V LT D G + LGL
Sbjct: 278 ETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337
Query: 463 PVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCG 505
P +V L + +IV V G+ A++ ++Y+WGS Q G
Sbjct: 338 PTIVKKL-TEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG 379
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 22/220 (10%)
Query: 188 SKVYTWGCNLHHQI--LDE--VRGKCSRPRLQSL-PSNI--------RHIEAGQFCTFLL 234
KV+T GC Q+ L E + G+ R + L P+ + I A +CTF+
Sbjct: 198 GKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMR 257
Query: 235 DSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVY 291
+S +++ G + LA+ T P++ + + + H + +T++ +
Sbjct: 258 ESQT-QVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCS 316
Query: 292 SWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDH 351
G E+G+LG G+ I+ L +++ V G S AVT DG LY+WG G +
Sbjct: 317 VVGRPEYGRLGLGDVKDVVEKPTIVKKLT-EKIVSVGCGEVCSYAVTIDGKLYSWGSGVN 375
Query: 352 GRLGHGDLKSRHTPTLVTELSDVGA----VSCGESHTLVL 387
+LG GD P +V + G S G H + L
Sbjct: 376 NQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFL 415
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 475 VDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQD-----NFSNP--VDQPSKVV 520
VD+S G H L L++ ++Y++G N G G+D + S P +D P K +
Sbjct: 78 VDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKAL 130
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFL--EGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117
VKQ + K K L+ L + +++FV+T R A + S + + T + +
Sbjct: 276 VKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRL 335
Query: 1118 SWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA--- 1174
+ L F G ++I T G D N++ VI Y++P I+ YV +I
Sbjct: 336 QSQREQALRD---FKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTG 392
Query: 1175 ---GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
+ A +F+DP D +A+ L+K+LE S + VP
Sbjct: 393 RVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 14/159 (8%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLE--GKRSL--IFVKTYRDASRIISAVQDSNMMTIPMSNN 1115
+ Q ++ +S K LL L GK SL +FV+T + A + + + +
Sbjct: 250 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 309
Query: 1116 GTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175
+ E L + F +GKS +++ T G D +NV+ VI ++LP I YV +I
Sbjct: 310 RSQRDREEAL---HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 366
Query: 1176 HKE------AIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208
A +F++ +I + L+ LL + + VP+
Sbjct: 367 TGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPS 404
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 14/159 (8%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLE--GKRSL--IFVKTYRDASRIISAVQDSNMMTIPMSNN 1115
+ Q ++ +S K LL L GK SL +FV+T + A + + + +
Sbjct: 20 ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGD 79
Query: 1116 GTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175
+ E L + F +GKS +++ T G D +NV+ VI ++LP I YV +I
Sbjct: 80 RSQRDREEAL---HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 136
Query: 1176 HKE------AIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208
A +F++ +I + L+ LL + + VP+
Sbjct: 137 TGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPS 174
>pdb|2V24|A Chain A, Structure Of The Human Spry Domain-Containing Socs Box
Protein Ssb-4
Length = 208
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 1436 GTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHR----TTGDMWL 1490
G RG +G RG + W+ +G + R P+ + + + W
Sbjct: 61 GIRG----KVGHARGLHAWQINWPARQRGTHAVVGVATARAPLHSVGYTALVGSDAESWG 116
Query: 1491 YRAYSGNVYHSGEQTTMLP---------SFTQGDYITVVLDMDAQTLSFGKNGEEPHLAF 1541
+ +YH G+ + +F D + VVLDMD TLSF +G+ +AF
Sbjct: 117 WDLGRSRLYHDGKNQPGVAYPAFLGPDEAFALPDSLLVVLDMDEGTLSFIVDGQYLGVAF 176
Query: 1542 QDLDTSAPLYPIV 1554
+ L LYP+V
Sbjct: 177 RGL-KGKKLYPVV 188
>pdb|2JK9|A Chain A, The Structure Of Spla-Ryanodine Receptor Domain And Socs
Box Containing 1 In Complex With A Par-4 Peptide
Length = 212
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 1443 ANIGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHRT----TGDMWLYRAYSGN 1497
+G TRG + W+ +G + P+ + T + W +
Sbjct: 68 GKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNR 127
Query: 1498 VYHSGEQ--TTMLPSFTQGDYITVV-------LDMDAQTLSFGKNGEEPHLAFQDLDTSA 1548
+YH G+ + P+F + D +V LDMD TLSF +G+ +AF+ L
Sbjct: 128 LYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGL-KGK 186
Query: 1549 PLYPIV 1554
LYP+V
Sbjct: 187 KLYPVV 192
>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN AND
SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN AND
SOCS BOX Containing 1 (Spsb1) In Complex With A
20-Residue Vasa Peptide
Length = 233
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 1443 ANIGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHRT----TGDMWLYRAYSGN 1497
+G TRG + W+ +G + P+ + T + W +
Sbjct: 89 GKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNR 148
Query: 1498 VYHSGEQ--TTMLPSFTQGDYITVV-------LDMDAQTLSFGKNGEEPHLAFQDLDTSA 1548
+YH G+ + P+F + D +V LDMD TLSF +G+ +AF+ L
Sbjct: 149 LYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGL-KGK 207
Query: 1549 PLYPIV 1554
LYP+V
Sbjct: 208 KLYPVV 213
>pdb|3EMW|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN AND
SOCS BOX Containing 2 (Spsb2) In Complex With A
20-Residue Vasa Peptide
Length = 217
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 23/189 (12%)
Query: 1381 EELDKQIEHLYCPPPSGTSNASRQGYVDID-SVSFD-KEKCVCCTVECGGQSLIHGPGTR 1438
+ + + +E L PP R G+ D S + + KE + QS G R
Sbjct: 21 QSMPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKR 80
Query: 1439 GYGVANIGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHR----TTGDMWLYRA 1493
GY +RG + W+ E +G + P++ ++ + + W +
Sbjct: 81 GY-------SRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWDI 133
Query: 1494 YSGNVYHS--GEQTTMLPSFTQGDYITV------VLDMDAQTLSFGKNGEEPHLAFQDLD 1545
G +YH G P+ TQG+ + V VLDM+ TL + G AF+ L
Sbjct: 134 GRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLK 193
Query: 1546 TSAPLYPIV 1554
LYP V
Sbjct: 194 GRT-LYPAV 201
>pdb|2AFJ|A Chain A, Spry Domain-Containing Socs Box Protein 2 (Ssb-2)
Length = 226
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 67/183 (36%), Gaps = 23/183 (12%)
Query: 1387 IEHLYCPPPSGTSNASRQGYVDID-SVSFD-KEKCVCCTVECGGQSLIHGPGTRGYGVAN 1444
+E L PP G+ D S + D KE +C QS G RGY
Sbjct: 24 LEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGY---- 79
Query: 1445 IGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNH-----RTTGDMWLYRAYSGNVY 1499
+RG + W+ E +G T +H + + W + G +Y
Sbjct: 80 ---SRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLY 136
Query: 1500 H--SGEQTTMLPSFTQGDYITV------VLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLY 1551
H G + P+ QG+ + V VLDM+ TL + G AF+ L LY
Sbjct: 137 HQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRT-LY 195
Query: 1552 PIV 1554
P V
Sbjct: 196 PSV 198
>pdb|3EK9|A Chain A, Spry Domain-Containing Socs Box Protein 2: Crystal Structure
And Residues Critical For Protein Binding
Length = 213
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 67/183 (36%), Gaps = 23/183 (12%)
Query: 1387 IEHLYCPPPSGTSNASRQGYVDID-SVSFD-KEKCVCCTVECGGQSLIHGPGTRGYGVAN 1444
+E L PP G+ D S + D KE +C QS G RGY
Sbjct: 18 LEELLSAPPPDLVAQRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGY---- 73
Query: 1445 IGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNH-----RTTGDMWLYRAYSGNVY 1499
+RG + W+ E +G T +H + + W + G +Y
Sbjct: 74 ---SRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLY 130
Query: 1500 H--SGEQTTMLPSFTQGDYITV------VLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLY 1551
H G + P+ QG+ + V VLDM+ TL + G AF+ L LY
Sbjct: 131 HQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRT-LY 189
Query: 1552 PIV 1554
P V
Sbjct: 190 PSV 192
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site B
pdb|3K49|C Chain C, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site B
pdb|3K49|E Chain E, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site B
pdb|3K4E|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site A
pdb|3K4E|C Chain C, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site A
pdb|3K4E|E Chain E, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr
Recognition Sequence Site A
Length = 369
Score = 34.7 bits (78), Expect = 0.56, Method: Composition-based stats.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 943 SPNYESDVNKYSVLLKYIPQ-QYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELL 1001
S + ES +N+ + Y+ Q QY N V Y++QQ + +E ++Q E++
Sbjct: 199 SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQ----------EII 248
Query: 1002 SAVSN------APSFDDNNVSMGVTSTQHNSTDSLFSW---GDIEEESNIEVEDPIMKLV 1052
V+N F N V + N D + S D N+E + P++ ++
Sbjct: 249 ETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMI 308
Query: 1053 KPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIF-VKTYRD 1094
K Y+I QK+VN +S EGK+ ++ ++ Y D
Sbjct: 309 KDQ----FANYVI-----QKLVN-VSEGEGKKLIVIAIRAYLD 341
>pdb|2FNJ|A Chain A, Crystal Structure Of A B30.2SPRY DOMAIN-Containing Protein
Gustavus In Complex With Elongin B And Elongin C
Length = 226
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 1443 ANIGITRGCYQWKFLIVNEHKGNE---GTCIGVTRWPIRDYNHRT----TGDMWLYRAYS 1495
+G+T+G + W+ +G G C P+ +++ T W +
Sbjct: 66 GKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADA--PLHSVGYQSLVGSTEQSWGWDLGR 123
Query: 1496 GNVYHSGEQTTML---------PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDT 1546
+YH + + +F D V LDMD TLSF + + +AF+ L
Sbjct: 124 NKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGL-R 182
Query: 1547 SAPLYPIV 1554
LYPIV
Sbjct: 183 GKKLYPIV 190
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 47/213 (22%)
Query: 287 EGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTW 346
+GEV +WG E G+ P G V ++AG S A+ +DG + W
Sbjct: 82 DGEVIAWGGNEDGQ--------TTVPAEARSG-----VDAIAAGAWASYAL-KDGKVIAW 127
Query: 347 GEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G+ G+ T S V A+ G L + G W G
Sbjct: 128 GDDSDGQ----------TTVPAEAQSGVTALDGGVYTALAVKNGGVIAW----------G 167
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLV 466
G+ T P A + V V G S+AL DG V WG R + T L
Sbjct: 168 DNYFGQTTVP----AEAQSGVDDVAGGIFHSLALK-DGKVIAWGDN-RYKQTTVPTEAL- 220
Query: 467 TGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSN 499
+G+S+ ++ G+ + LAL +V AWGS+
Sbjct: 221 SGVSA-----IASGEWYSLALKN-GKVIAWGSS 247
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 406 GHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVL 465
G+ D G+ T P A + V + G +AL G V WG L L
Sbjct: 11 GNNDWGEATVP----AEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQ--------L 57
Query: 466 VTGLSSHQIVD-VSIGDSHVLALSQYNEVYAWGSNTMGQ 503
++ VD ++ G+ H LAL EV AWG N GQ
Sbjct: 58 TMPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQ 95
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 82/213 (38%), Gaps = 47/213 (22%)
Query: 287 EGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTW 346
+GEV +WG E G+ P G V ++AG S A+ +DG + W
Sbjct: 80 DGEVIAWGGNEDGQ--------TTVPAEARSG-----VDAIAAGAWASYAL-KDGKVIAW 125
Query: 347 GEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG 406
G+ G+ T S V A+ G L + G W G
Sbjct: 126 GDDSDGQ----------TTVPAEAQSGVTALDGGVYTALAVKNGGVIAW----------G 165
Query: 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLV 466
G+ T P A + V V G S+AL DG V WG R + T L
Sbjct: 166 DNYFGQTTVP----AEAQSGVDDVAGGIFHSLALK-DGKVIAWGDN-RYKQTTVPTEAL- 218
Query: 467 TGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSN 499
+G+S+ ++ G+ + LAL +V AWGS+
Sbjct: 219 SGVSA-----IASGEWYSLALKN-GKVIAWGSS 245
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 406 GHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVL 465
G+ D G+ T P A + V + G +AL G V WG L L
Sbjct: 9 GNNDWGEATVP----AEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQ--------L 55
Query: 466 VTGLSSHQIVD-VSIGDSHVLALSQYNEVYAWGSNTMGQ 503
++ VD ++ G+ H LAL EV AWG N GQ
Sbjct: 56 TMPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQ 93
>pdb|2IHS|A Chain A, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
pdb|2IHS|B Chain B, Crystal Structure Of The B30.2SPRY DOMAIN OF GUSTAVUS IN
Complex With A 20-Residue Vasa Peptide
Length = 214
Score = 33.9 bits (76), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 1443 ANIGITRGCYQWKFLIVNEHKGNE---GTCIGVTRWPIRDYNHRT----TGDMWLYRAYS 1495
+G+T+G + W+ +G G C P+ +++ T W +
Sbjct: 68 GKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADA--PLHSVGYQSLVGSTEQSWGWDLGR 125
Query: 1496 GNVYHSGEQTTML---------PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDT 1546
+YH + + +F D V LDMD TLSF + + +AF+ L
Sbjct: 126 NKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRGL-R 184
Query: 1547 SAPLYPIV 1554
LYPIV
Sbjct: 185 GKKLYPIV 192
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 1035 DIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQ----KIVNLLSFLEGKRSLIF 1088
D+ E + + DPI LVK + L ++Q+ I + + + +L L +++IF
Sbjct: 227 DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF 286
Query: 1089 VKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIG 1148
+ T R + + + M + E ++ F +G S ++I T G
Sbjct: 287 INTRRKVDWLTEKMHARDFTVSAMHGD---MDQKERDVIMREFRSGSSRVLITTDLLARG 343
Query: 1149 NDFTNVEQVIIYNLPLSINHYV 1170
D V VI Y+LP + +Y+
Sbjct: 344 IDVQQVSLVINYDLPTNRENYI 365
>pdb|3GFX|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFX|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 4.5 CalciumCY-Digmp Complex
pdb|3GFY|A Chain A, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFY|B Chain B, Klebsiella Pneumoniae Blrp1 With Fmn And Cyclic Digmp, No
Metal Ions
pdb|3GFZ|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GFZ|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 6 Manganese/cy-digmp
Complex
pdb|3GG0|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG0|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 9.0 ManganeseCY-Digmp
Complex
pdb|3GG1|A Chain A, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
pdb|3GG1|B Chain B, Klebsiella Pneumoniae Blrp1 Ph 8.0 CalciumCY-Digmp Complex
Length = 413
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 895 PPEAHEETETVHWLKTSLLSAGLEPSTAIIDI---------DKFVRDMR--HVSNNILMS 943
P + + V WL SLL+AGL P +I++ D+F + ++ V+ L
Sbjct: 250 PGSLYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAI 309
Query: 944 PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQI 989
++ + + S+L ++ P + K V + L++ +S ++ ++ +
Sbjct: 310 DDFGAGYSGLSLLTRFQPDKIK--VDAELVRDIHISGTKQAIVASV 353
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 1035 DIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQ----KIVNLLSFLEGKRSLIF 1088
D+ E + + DPI LVK + L ++Q+ I + + + +L L +++IF
Sbjct: 201 DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF 260
Query: 1089 VKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIG 1148
+ T R + + + M + E ++ F +G S ++I T G
Sbjct: 261 INTRRKVDWLTEKMHARDFTVSAMHGD---MDQKERDVIMREFRSGSSRVLITTDLLARG 317
Query: 1149 NDFTNVEQVIIYNLPLSINHYV 1170
D V VI Y+LP + +Y+
Sbjct: 318 IDVQQVSLVINYDLPTNRENYI 339
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLEGKR--SLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117
++Q + ++++ L L+ K L+F KT RD + S ++D + +
Sbjct: 214 IEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGD-L 272
Query: 1118 SWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA 1174
S S E +++ LF K ++I T G D ++ VI Y+LP + Y +I
Sbjct: 273 SQSQRE--KVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIG 327
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 1131 FNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHKE-AIAFYD 1184
F GK +++ T G DF ++ VI Y++P I +YV +I +G+ A F +
Sbjct: 100 FREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159
Query: 1185 PVADIGLASSLIKLLEYSNKHVP 1207
D + L LL + + VP
Sbjct: 160 KACDESVLMDLKALLLEAKQKVP 182
>pdb|2QKL|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme
Dcp1-Dcp2 Complex
pdb|2QKM|A Chain A, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme
Dcp1-Dcp2 Complex
pdb|2QKM|C Chain C, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme
Dcp1-Dcp2 Complex
pdb|2QKM|E Chain E, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme
Dcp1-Dcp2 Complex
pdb|2QKM|G Chain G, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme
Dcp1-Dcp2 Complex
Length = 127
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 1054 PSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIF 1088
PS+VHLV +YLI ++Q +V L F S IF
Sbjct: 84 PSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIF 118
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 31.6 bits (70), Expect = 4.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 925 DIDKFV---RDMRHVSNNILMSPNYESDVNKYSVLLKYI 960
D+DK + D++++ N S N+E + KY+ +L+Y+
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV 253
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 937 SNNILMS---PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPRE---KTVLEQIF 990
SN +L + PNY+S V +Y + +P + +YL +Q+ L + + L +I+
Sbjct: 527 SNKLLYAKDIPNYKSWVERYYADIAKMPAISDQDMSAYLAEQSRLHLSQFNSMSALHEIY 586
Query: 991 SVVNKFRAELLSAV 1004
S + K++ E+L A+
Sbjct: 587 SYIAKYKDEILVAL 600
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With
The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex With
The Dead- Box Helicase Ddx19
Length = 479
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 1044 VEDP-IMKLVKPS-SVHLVKQYLI----RTPKSQKIVNLLSFLEGKRSLIFVKTYRDASR 1097
V DP ++KL + ++ +KQY + R K Q + NL + +++IF T + AS
Sbjct: 289 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 348
Query: 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV 1157
+ + + +S +E F GK +++ T G D V V
Sbjct: 349 LAAELSKEGHQVALLSGEMMVEQRAAVIER---FREGKEKVLVTTNVCARGIDVEQVSVV 405
Query: 1158 IIYNLPL 1164
I ++LP+
Sbjct: 406 INFDLPV 412
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 1044 VEDP-IMKLVKPS-SVHLVKQYLI----RTPKSQKIVNLLSFLEGKRSLIFVKTYRDASR 1097
V DP ++KL + ++ +KQY + R K Q + NL + +++IF T + AS
Sbjct: 222 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 281
Query: 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV 1157
+ + + +S +E F GK +++ T G D V V
Sbjct: 282 LAAELSKEGHQVALLSGEMMVEQRAAVIER---FREGKEKVLVTTNVCARGIDVEQVSVV 338
Query: 1158 IIYNLPL 1164
I ++LP+
Sbjct: 339 INFDLPV 345
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 1044 VEDP-IMKLVKPS-SVHLVKQYLI----RTPKSQKIVNLLSFLEGKRSLIFVKTYRDASR 1097
V DP ++KL + ++ +KQY + R K Q + NL + +++IF T + AS
Sbjct: 259 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 318
Query: 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV 1157
+ + + +S +E F GK +++ T G D V V
Sbjct: 319 LAAELSKEGHQVALLSGEMMVEQRAAVIER---FREGKEKVLVTTNVCARGIDVEQVSVV 375
Query: 1158 IIYNLPL 1164
I ++LP+
Sbjct: 376 INFDLPV 382
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 1044 VEDP-IMKLVKPS-SVHLVKQYLI----RTPKSQKIVNLLSFLEGKRSLIFVKTYRDASR 1097
V DP ++KL + ++ +KQY + R K Q + NL + +++IF T + AS
Sbjct: 238 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 297
Query: 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV 1157
+ + + +S +E F GK +++ T G D V V
Sbjct: 298 LAAELSKEGHQVALLSGEMMVEQRAAVIER---FREGKEKVLVTTNVCARGIDVEQVSVV 354
Query: 1158 IIYNLPL 1164
I ++LP+
Sbjct: 355 INFDLPV 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,791,382
Number of Sequences: 62578
Number of extensions: 2157037
Number of successful extensions: 4588
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 4379
Number of HSP's gapped (non-prelim): 94
length of query: 1858
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1745
effective length of database: 7,902,023
effective search space: 13789030135
effective search space used: 13789030135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)