Query psy15269
Match_columns 1858
No_of_seqs 1070 out of 5229
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:42:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 1.5E-50 3.2E-55 493.5 19.3 311 840-1210 142-471 (519)
2 KOG0330|consensus 100.0 1.2E-45 2.7E-50 424.6 14.5 302 840-1207 112-427 (476)
3 COG0513 SrmB Superfamily II DN 100.0 3.6E-44 7.7E-49 452.2 22.3 303 840-1204 80-398 (513)
4 KOG0333|consensus 100.0 1.4E-43 3.1E-48 418.1 19.5 358 789-1207 268-645 (673)
5 KOG0328|consensus 100.0 9.6E-44 2.1E-48 393.9 16.3 287 867-1208 94-394 (400)
6 KOG0336|consensus 100.0 3.6E-43 7.8E-48 403.1 14.6 283 870-1208 296-593 (629)
7 COG5184 ATS1 Alpha-tubulin sup 100.0 1.3E-40 2.7E-45 394.7 30.4 352 183-541 63-463 (476)
8 KOG0342|consensus 100.0 6.8E-41 1.5E-45 395.7 17.9 296 840-1196 133-446 (543)
9 KOG0338|consensus 100.0 3.2E-40 7E-45 388.1 21.3 295 842-1199 234-545 (691)
10 KOG0335|consensus 100.0 2E-40 4.2E-45 398.9 19.4 317 840-1212 125-469 (482)
11 KOG0341|consensus 100.0 3.5E-41 7.6E-46 384.6 10.9 303 853-1209 234-551 (610)
12 KOG0340|consensus 100.0 7.4E-40 1.6E-44 373.4 19.1 316 869-1239 76-413 (442)
13 KOG0343|consensus 100.0 9.2E-40 2E-44 386.8 18.0 297 840-1198 120-434 (758)
14 COG5184 ATS1 Alpha-tubulin sup 100.0 2.4E-38 5.2E-43 375.4 28.4 332 227-565 57-429 (476)
15 KOG0345|consensus 100.0 1.5E-38 3.2E-43 373.0 22.9 294 840-1195 57-372 (567)
16 KOG0326|consensus 100.0 1.2E-38 2.6E-43 358.1 10.0 302 843-1210 139-452 (459)
17 KOG0339|consensus 100.0 2.6E-37 5.6E-42 362.8 16.2 305 843-1208 277-596 (731)
18 PTZ00110 helicase; Provisional 100.0 1.1E-35 2.4E-40 378.3 20.8 305 843-1208 184-505 (545)
19 KOG1427|consensus 100.0 1.6E-34 3.4E-39 321.8 19.6 350 186-541 18-397 (443)
20 PRK11634 ATP-dependent RNA hel 100.0 4.1E-34 8.8E-39 367.6 24.7 350 841-1255 58-435 (629)
21 KOG0348|consensus 100.0 1.2E-33 2.7E-38 334.5 24.1 303 840-1201 188-568 (708)
22 KOG0327|consensus 100.0 3.7E-34 8E-39 332.4 17.4 290 865-1209 91-392 (397)
23 KOG0334|consensus 100.0 9.6E-34 2.1E-38 359.8 18.9 313 840-1208 416-741 (997)
24 PRK11776 ATP-dependent RNA hel 100.0 3.3E-33 7.1E-38 350.2 21.7 300 841-1205 56-367 (460)
25 PRK04837 ATP-dependent RNA hel 100.0 4E-33 8.6E-38 345.9 22.0 306 841-1205 60-380 (423)
26 PLN00206 DEAD-box ATP-dependen 100.0 6E-33 1.3E-37 351.9 22.2 311 841-1211 173-499 (518)
27 PRK10590 ATP-dependent RNA hel 100.0 1.2E-32 2.6E-37 344.6 23.3 304 841-1204 53-369 (456)
28 KOG0337|consensus 100.0 2.7E-33 5.9E-38 325.1 12.3 302 840-1204 72-385 (529)
29 PRK04537 ATP-dependent RNA hel 100.0 9.3E-32 2E-36 343.8 22.9 308 840-1206 60-383 (572)
30 KOG0332|consensus 100.0 2.2E-31 4.8E-36 305.6 17.3 281 870-1207 162-464 (477)
31 PRK11192 ATP-dependent RNA hel 100.0 7E-31 1.5E-35 326.8 23.0 302 841-1204 53-369 (434)
32 KOG0347|consensus 100.0 1.5E-32 3.3E-37 326.1 6.6 327 842-1203 235-586 (731)
33 KOG1427|consensus 100.0 5.1E-31 1.1E-35 293.9 16.8 300 180-490 69-399 (443)
34 KOG0346|consensus 100.0 5E-29 1.1E-33 290.8 20.9 308 840-1202 70-425 (569)
35 PRK01297 ATP-dependent RNA hel 100.0 1.2E-28 2.7E-33 310.1 23.0 285 869-1208 163-464 (475)
36 KOG4284|consensus 100.0 3.3E-29 7.1E-34 300.7 14.3 270 872-1195 97-388 (980)
37 KOG4367|consensus 100.0 7.6E-29 1.7E-33 284.8 15.0 162 1408-1578 531-698 (699)
38 KOG0344|consensus 100.0 1.5E-27 3.2E-32 289.1 19.2 315 835-1211 183-519 (593)
39 PTZ00424 helicase 45; Provisio 99.9 1.7E-26 3.6E-31 284.3 21.4 284 870-1208 98-395 (401)
40 KOG0329|consensus 99.9 1.4E-26 2.9E-31 254.7 1.5 253 870-1209 112-378 (387)
41 KOG0783|consensus 99.9 1.9E-24 4.2E-29 263.8 16.0 294 187-491 141-450 (1267)
42 TIGR03817 DECH_helic helicase/ 99.9 8.1E-24 1.8E-28 277.5 20.9 294 841-1205 66-406 (742)
43 KOG3953|consensus 99.9 4.2E-24 9.2E-29 234.4 12.5 159 1412-1578 27-201 (242)
44 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.1E-23 2.5E-28 272.0 15.2 261 873-1185 67-390 (844)
45 KOG0350|consensus 99.9 5.1E-23 1.1E-27 244.1 19.3 310 840-1201 197-554 (620)
46 KOG0783|consensus 99.9 3.8E-23 8.2E-28 252.6 15.3 297 232-547 136-450 (1267)
47 PHA02653 RNA helicase NPH-II; 99.9 3.2E-21 7E-26 248.3 21.0 254 870-1185 224-513 (675)
48 PRK09401 reverse gyrase; Revie 99.9 1.9E-21 4.2E-26 263.0 17.9 271 869-1175 124-427 (1176)
49 KOG0349|consensus 99.9 1.7E-21 3.7E-26 226.2 13.3 292 871-1207 289-667 (725)
50 PLN03137 ATP-dependent DNA hel 99.9 6.8E-21 1.5E-25 249.0 19.2 265 871-1196 503-796 (1195)
51 TIGR00614 recQ_fam ATP-depende 99.8 4.7E-20 1E-24 232.3 18.4 270 871-1197 54-343 (470)
52 PRK09751 putative ATP-dependen 99.8 1.1E-19 2.4E-24 246.7 22.3 297 867-1205 36-405 (1490)
53 KOG1428|consensus 99.8 1.2E-19 2.6E-24 226.1 19.7 316 221-565 481-856 (3738)
54 TIGR01054 rgy reverse gyrase. 99.8 1E-19 2.2E-24 246.7 20.3 250 869-1165 122-410 (1171)
55 PRK10689 transcription-repair 99.8 2.2E-19 4.7E-24 242.9 18.0 249 870-1184 651-917 (1147)
56 PRK11057 ATP-dependent DNA hel 99.8 7E-19 1.5E-23 227.7 21.4 265 871-1195 68-351 (607)
57 TIGR00580 mfd transcription-re 99.8 9.8E-19 2.1E-23 232.2 21.4 254 870-1185 502-769 (926)
58 PRK14701 reverse gyrase; Provi 99.8 5E-19 1.1E-23 244.2 13.5 269 870-1173 124-424 (1638)
59 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.9E-18 4E-23 227.5 15.1 255 870-1185 47-335 (819)
60 KOG1428|consensus 99.7 5.7E-17 1.2E-21 202.8 23.3 326 186-540 496-892 (3738)
61 PRK13767 ATP-dependent helicas 99.7 1.9E-17 4.2E-22 221.6 20.8 283 833-1173 55-378 (876)
62 PRK11664 ATP-dependent RNA hel 99.7 3.9E-18 8.6E-23 224.9 13.4 255 870-1185 50-338 (812)
63 TIGR01389 recQ ATP-dependent D 99.7 1.6E-17 3.5E-22 215.0 18.3 221 930-1195 104-339 (591)
64 PRK10917 ATP-dependent DNA hel 99.7 2E-16 4.4E-21 207.1 21.4 252 871-1184 313-587 (681)
65 PF00622 SPRY: SPRY domain; I 99.7 3.6E-16 7.9E-21 161.2 13.8 114 1449-1570 1-120 (124)
66 PRK12898 secA preprotein trans 99.7 1E-15 2.2E-20 195.4 20.0 155 1028-1188 414-587 (656)
67 smart00449 SPRY Domain in SPla 99.7 4E-16 8.6E-21 161.2 12.9 107 1449-1559 1-112 (122)
68 PRK11131 ATP-dependent RNA hel 99.6 6.7E-16 1.4E-20 207.2 15.4 242 876-1185 130-410 (1294)
69 TIGR00643 recG ATP-dependent D 99.6 3.8E-15 8.2E-20 194.0 21.5 253 870-1183 286-563 (630)
70 PRK04914 ATP-dependent helicas 99.6 2.9E-15 6.2E-20 198.9 17.4 131 1070-1203 478-619 (956)
71 PRK09200 preprotein translocas 99.6 1.6E-14 3.4E-19 188.0 23.7 117 1064-1185 405-540 (790)
72 TIGR01587 cas3_core CRISPR-ass 99.6 9.5E-16 2.1E-20 186.7 8.8 139 1029-1173 162-313 (358)
73 COG0514 RecQ Superfamily II DN 99.6 3.8E-14 8.3E-19 178.1 17.2 225 930-1197 108-347 (590)
74 PRK02362 ski2-like helicase; P 99.5 6.4E-14 1.4E-18 185.8 17.6 257 870-1185 69-396 (737)
75 TIGR00963 secA preprotein tran 99.5 8.9E-13 1.9E-17 169.6 24.2 115 1066-1185 384-516 (745)
76 PRK00254 ski2-like helicase; P 99.5 1.3E-13 2.8E-18 182.5 16.1 256 870-1185 70-387 (720)
77 PRK05298 excinuclease ABC subu 99.5 3.1E-13 6.6E-18 176.4 18.0 134 1072-1208 431-587 (652)
78 PHA02558 uvsW UvsW helicase; P 99.5 3.4E-13 7.4E-18 171.7 15.1 238 870-1173 160-433 (501)
79 TIGR03158 cas3_cyano CRISPR-as 99.4 5.1E-13 1.1E-17 163.3 13.9 136 1029-1177 188-357 (357)
80 TIGR00631 uvrb excinuclease AB 99.4 1.2E-12 2.6E-17 170.0 16.9 125 1070-1198 425-564 (655)
81 TIGR01967 DEAH_box_HrpA ATP-de 99.4 6.7E-13 1.5E-17 179.4 13.0 211 927-1185 154-403 (1283)
82 TIGR03714 secA2 accessory Sec 99.4 1.4E-11 3E-16 159.6 20.6 116 1064-1185 401-536 (762)
83 PRK01172 ski2-like helicase; P 99.4 4.5E-12 9.8E-17 167.0 15.6 266 871-1202 68-391 (674)
84 PRK13766 Hef nuclease; Provisi 99.3 1.9E-11 4.1E-16 163.7 15.0 100 1083-1185 366-478 (773)
85 COG1111 MPH1 ERCC4-like helica 99.3 3.2E-11 6.9E-16 146.4 13.3 120 1063-1185 343-480 (542)
86 PF00271 Helicase_C: Helicase 99.2 2.2E-11 4.8E-16 116.2 7.8 73 1100-1175 1-73 (78)
87 PRK12906 secA preprotein trans 99.2 2.6E-10 5.6E-15 148.4 19.7 118 1064-1186 417-553 (796)
88 PRK12900 secA preprotein trans 99.2 2.7E-10 5.9E-15 148.8 19.1 134 1064-1202 575-730 (1025)
89 cd00079 HELICc Helicase superf 99.2 2.4E-10 5.2E-15 118.1 13.7 111 1060-1174 2-117 (131)
90 KOG0354|consensus 99.1 3.1E-10 6.7E-15 144.9 13.4 119 1070-1189 394-531 (746)
91 COG1201 Lhr Lhr-like helicases 99.1 3.7E-09 8.1E-14 138.1 23.5 282 833-1175 45-344 (814)
92 KOG0351|consensus 99.1 9.5E-10 2.1E-14 146.0 16.2 195 968-1195 392-600 (941)
93 TIGR00603 rad25 DNA repair hel 99.0 1.7E-09 3.6E-14 140.7 14.1 125 1069-1201 478-623 (732)
94 PRK05580 primosome assembly pr 99.0 2.7E-09 6E-14 140.4 15.9 245 870-1173 192-530 (679)
95 PRK12904 preprotein translocas 99.0 1E-08 2.2E-13 134.2 18.5 85 1064-1153 407-496 (830)
96 PRK13104 secA preprotein trans 98.9 1E-08 2.2E-13 134.3 17.0 82 1066-1152 423-509 (896)
97 KOG0941|consensus 98.9 1.3E-10 2.8E-15 147.1 -2.1 290 319-675 11-328 (850)
98 smart00490 HELICc helicase sup 98.9 4.2E-09 9.1E-14 99.8 8.3 76 1097-1175 2-77 (82)
99 TIGR00595 priA primosomal prot 98.8 1.9E-08 4.1E-13 128.4 14.1 76 1095-1173 271-362 (505)
100 KOG0352|consensus 98.8 1.1E-08 2.4E-13 121.1 9.2 196 967-1197 147-372 (641)
101 KOG2626|consensus 98.8 2.9E-08 6.4E-13 121.3 12.0 135 1422-1560 304-485 (544)
102 PRK09694 helicase Cas3; Provis 98.8 6E-08 1.3E-12 129.5 16.0 97 1072-1174 549-657 (878)
103 PF00415 RCC1: Regulator of ch 98.7 1.4E-08 3E-13 89.6 5.0 51 490-540 1-51 (51)
104 PF00415 RCC1: Regulator of ch 98.7 1.5E-08 3.3E-13 89.3 5.1 50 287-337 1-51 (51)
105 PLN03142 Probable chromatin-re 98.6 2.9E-07 6.4E-12 124.2 13.6 127 1070-1199 470-613 (1033)
106 KOG0941|consensus 98.6 2.2E-09 4.7E-14 136.3 -6.2 134 268-403 13-156 (850)
107 PF13540 RCC1_2: Regulator of 98.5 1.5E-07 3.3E-12 74.6 4.9 30 474-503 1-30 (30)
108 PF13540 RCC1_2: Regulator of 98.5 1.9E-07 4.1E-12 74.0 4.8 30 324-353 1-30 (30)
109 KOG0349|consensus 98.5 4.3E-07 9.3E-12 107.9 9.5 110 1439-1556 118-232 (725)
110 KOG4030|consensus 98.4 2.4E-06 5.1E-11 89.7 11.8 145 1409-1574 26-177 (197)
111 COG0556 UvrB Helicase subunit 98.4 8.2E-06 1.8E-10 100.5 17.7 113 1069-1184 428-555 (663)
112 KOG0353|consensus 98.3 8.2E-07 1.8E-11 103.8 7.2 111 1058-1171 287-403 (695)
113 PRK13107 preprotein translocas 98.2 2.9E-05 6.3E-10 102.6 19.2 83 1065-1152 427-514 (908)
114 PRK11448 hsdR type I restricti 98.2 1.9E-05 4E-10 108.9 16.9 87 1083-1174 699-795 (1123)
115 COG1061 SSL2 DNA or RNA helica 98.1 8.1E-06 1.8E-10 103.2 11.4 88 1082-1173 283-370 (442)
116 COG1202 Superfamily II helicas 98.1 4.7E-06 1E-10 102.6 8.0 150 1029-1185 379-552 (830)
117 COG1197 Mfd Transcription-repa 97.9 0.00014 3.1E-09 97.6 16.8 255 869-1183 644-908 (1139)
118 COG1200 RecG RecG-like helicas 97.8 0.00051 1.1E-08 88.2 17.2 254 870-1185 313-590 (677)
119 COG4098 comFA Superfamily II D 97.7 7.6E-05 1.6E-09 88.1 8.9 125 1029-1158 240-378 (441)
120 COG1110 Reverse gyrase [DNA re 97.6 0.001 2.2E-08 87.7 17.7 269 869-1164 126-417 (1187)
121 COG1205 Distinct helicase fami 97.4 0.00058 1.3E-08 92.4 11.8 152 1029-1184 239-418 (851)
122 KOG2243|consensus 97.4 0.00035 7.7E-09 90.0 8.8 124 1430-1556 1084-1214(5019)
123 KOG1477|consensus 97.4 0.00073 1.6E-08 85.5 10.8 153 1413-1571 33-201 (469)
124 PRK12899 secA preprotein trans 97.2 0.052 1.1E-06 73.1 25.0 112 1068-1185 549-680 (970)
125 cd00268 DEADc DEAD-box helicas 97.1 0.0005 1.1E-08 77.4 4.6 131 869-1050 70-202 (203)
126 KOG0391|consensus 97.0 0.011 2.4E-07 78.5 15.9 123 1060-1185 1252-1386(1958)
127 KOG1002|consensus 96.8 0.0043 9.3E-08 76.2 9.0 114 1069-1185 618-748 (791)
128 COG1203 CRISPR-associated heli 96.8 0.0058 1.3E-07 82.3 11.4 139 1029-1173 377-529 (733)
129 KOG0385|consensus 96.7 0.011 2.4E-07 76.3 12.6 143 1040-1185 441-598 (971)
130 PF06862 DUF1253: Protein of u 96.7 0.025 5.5E-07 71.2 15.5 232 932-1200 134-425 (442)
131 KOG0384|consensus 96.6 0.0099 2.1E-07 80.0 11.7 110 1073-1185 688-810 (1373)
132 COG0553 HepA Superfamily II DN 96.5 0.021 4.6E-07 78.0 14.0 99 1084-1185 713-821 (866)
133 TIGR01407 dinG_rel DnaQ family 96.4 0.0081 1.8E-07 82.3 9.7 76 1083-1164 675-756 (850)
134 KOG0389|consensus 96.2 0.036 7.7E-07 72.1 12.9 115 1068-1185 761-887 (941)
135 KOG0953|consensus 96.2 0.12 2.6E-06 65.3 16.8 79 1080-1163 355-436 (700)
136 KOG0392|consensus 96.2 0.025 5.5E-07 76.1 11.7 100 1083-1185 1341-1453(1549)
137 KOG0390|consensus 96.1 0.032 7E-07 73.9 12.1 131 1064-1197 571-720 (776)
138 KOG4150|consensus 96.1 0.034 7.5E-07 69.4 11.4 120 1082-1205 525-660 (1034)
139 KOG0387|consensus 96.0 0.052 1.1E-06 70.7 12.6 125 1070-1197 529-671 (923)
140 PRK12903 secA preprotein trans 95.9 0.26 5.6E-06 66.1 18.8 115 1065-1185 404-538 (925)
141 KOG0952|consensus 95.8 0.18 4E-06 67.6 17.0 233 867-1158 163-445 (1230)
142 KOG1000|consensus 95.8 0.064 1.4E-06 66.6 11.9 116 1083-1201 493-619 (689)
143 COG1204 Superfamily II helicas 95.5 0.04 8.7E-07 74.2 9.5 98 1073-1173 243-387 (766)
144 KOG0922|consensus 95.3 0.099 2.1E-06 67.5 11.5 173 983-1185 179-389 (674)
145 KOG0951|consensus 95.2 0.044 9.6E-07 74.0 8.4 140 1028-1173 480-681 (1674)
146 KOG1477|consensus 95.2 0.011 2.3E-07 75.3 2.7 70 1490-1561 2-72 (469)
147 COG1643 HrpA HrpA-like helicas 94.3 0.23 5E-06 67.3 11.7 129 1029-1164 202-342 (845)
148 KOG0950|consensus 93.7 0.2 4.3E-06 67.0 9.3 108 1083-1194 461-618 (1008)
149 PRK12326 preprotein translocas 93.4 2.1 4.5E-05 57.2 17.6 116 1064-1185 404-546 (764)
150 PF13307 Helicase_C_2: Helicas 93.3 0.12 2.7E-06 57.2 5.6 75 1083-1164 10-92 (167)
151 PF11725 AvrE: Pathogenicity f 92.1 0.82 1.8E-05 64.3 11.9 283 220-542 490-813 (1774)
152 KOG3669|consensus 91.7 17 0.00037 46.9 21.4 69 218-293 226-299 (705)
153 KOG4439|consensus 91.4 1 2.3E-05 58.6 10.8 120 1063-1185 721-857 (901)
154 KOG0948|consensus 91.2 1.7 3.7E-05 57.1 12.4 161 1029-1193 273-546 (1041)
155 KOG0388|consensus 91.0 1.1 2.4E-05 58.1 10.4 114 1069-1185 1029-1153(1185)
156 PRK12901 secA preprotein trans 90.9 1.8 3.9E-05 59.4 12.9 116 1064-1185 605-740 (1112)
157 CHL00122 secA preprotein trans 90.6 0.98 2.1E-05 61.1 10.2 86 1064-1152 401-491 (870)
158 PRK13103 secA preprotein trans 90.6 1.9 4E-05 58.9 12.7 82 1065-1152 427-514 (913)
159 KOG0947|consensus 89.8 1.8 4E-05 58.1 11.2 101 1074-1177 556-709 (1248)
160 PRK12902 secA preprotein trans 89.5 1.4 3E-05 59.8 10.1 84 1065-1152 417-506 (939)
161 PF11725 AvrE: Pathogenicity f 89.0 6.8 0.00015 55.9 16.2 246 270-552 490-769 (1774)
162 PRK07246 bifunctional ATP-depe 88.9 1.8 3.9E-05 59.6 11.0 76 1082-1163 647-724 (820)
163 KOG3669|consensus 88.8 10 0.00022 48.8 16.2 109 329-450 190-300 (705)
164 KOG2340|consensus 88.3 1.7 3.6E-05 55.3 9.0 142 1029-1173 476-642 (698)
165 PRK11747 dinG ATP-dependent DN 88.0 1.8 3.8E-05 58.7 9.9 75 1083-1164 535-616 (697)
166 TIGR03117 cas_csf4 CRISPR-asso 87.5 1.9 4.1E-05 57.4 9.5 89 1073-1166 459-563 (636)
167 PRK08074 bifunctional ATP-depe 87.3 1.8 3.8E-05 60.6 9.5 77 1083-1164 753-835 (928)
168 KOG0924|consensus 87.1 3.1 6.6E-05 54.3 10.4 128 1029-1163 507-651 (1042)
169 PRK05580 primosome assembly pr 86.9 2.5 5.4E-05 57.1 10.3 76 1082-1161 190-266 (679)
170 KOG0923|consensus 86.8 3.4 7.4E-05 53.8 10.6 127 1029-1162 417-559 (902)
171 TIGR00348 hsdR type I site-spe 86.5 1.8 3.9E-05 58.3 8.6 91 1082-1173 514-628 (667)
172 PRK10917 ATP-dependent DNA hel 86.4 2.6 5.6E-05 57.0 10.1 75 1081-1158 309-388 (681)
173 KOG0920|consensus 85.9 1.7 3.8E-05 59.2 7.9 239 1072-1338 399-672 (924)
174 COG1199 DinG Rad3-related DNA 85.0 3.2 6.9E-05 55.8 10.0 92 1076-1173 471-569 (654)
175 PF00270 DEAD: DEAD/DEAH box h 83.9 0.27 5.8E-06 53.4 -0.7 119 870-1039 46-169 (169)
176 TIGR00595 priA primosomal prot 83.8 4.1 8.9E-05 53.2 9.8 74 1082-1159 25-99 (505)
177 PF13765 PRY: SPRY-associated 82.3 1.5 3.2E-05 39.1 3.4 26 1412-1437 1-27 (49)
178 COG4096 HsdR Type I site-speci 81.6 3.6 7.7E-05 55.2 7.9 86 1083-1173 427-519 (875)
179 KOG0943|consensus 80.5 0.41 8.8E-06 63.8 -0.9 131 266-401 371-506 (3015)
180 KOG0386|consensus 80.4 11 0.00023 51.7 11.6 99 1083-1184 727-836 (1157)
181 KOG2243|consensus 79.9 1.9 4.2E-05 58.1 4.5 107 1471-1582 708-827 (5019)
182 TIGR00580 mfd transcription-re 79.9 6 0.00013 55.2 9.7 76 1080-1158 498-578 (926)
183 KOG1015|consensus 78.9 4.2 9.2E-05 54.6 7.2 101 1069-1172 1124-1255(1567)
184 TIGR00604 rad3 DNA repair heli 78.1 6.3 0.00014 53.6 9.0 78 1083-1164 523-615 (705)
185 COG1198 PriA Primosomal protei 77.8 4 8.7E-05 55.0 6.9 76 1083-1161 483-560 (730)
186 TIGR00643 recG ATP-dependent D 77.2 7.6 0.00016 52.2 9.3 74 1082-1158 284-362 (630)
187 TIGR00596 rad1 DNA repair prot 76.1 6.7 0.00015 53.8 8.3 39 1066-1104 268-317 (814)
188 KOG1123|consensus 75.7 11 0.00024 47.9 9.1 109 1069-1185 528-652 (776)
189 PRK10689 transcription-repair 75.0 10 0.00022 54.3 9.8 76 1080-1158 647-727 (1147)
190 COG1110 Reverse gyrase [DNA re 73.4 9.2 0.0002 52.5 8.2 67 1076-1145 119-191 (1187)
191 KOG0943|consensus 73.2 0.49 1.1E-05 63.1 -3.1 128 220-353 375-509 (3015)
192 KOG0315|consensus 72.2 1.7E+02 0.0038 34.9 16.9 155 322-500 84-246 (311)
193 smart00492 HELICc3 helicase su 71.8 12 0.00025 40.9 7.3 44 1121-1164 33-79 (141)
194 KOG0926|consensus 71.3 12 0.00026 50.0 8.4 41 1121-1161 616-656 (1172)
195 PHA02713 hypothetical protein; 70.9 23 0.0005 47.0 11.3 60 182-245 298-359 (557)
196 KOG0701|consensus 70.1 2.2 4.8E-05 61.1 1.7 94 1085-1178 295-397 (1606)
197 smart00487 DEXDc DEAD-like hel 69.8 3.5 7.6E-05 44.9 2.9 133 871-1054 57-192 (201)
198 KOG0646|consensus 68.7 2E+02 0.0043 37.0 17.5 207 324-552 84-304 (476)
199 smart00491 HELICc2 helicase su 68.3 11 0.00024 41.0 6.3 66 1095-1164 4-80 (142)
200 PRK14873 primosome assembly pr 67.4 15 0.00033 49.5 8.6 89 1069-1161 170-265 (665)
201 COG0513 SrmB Superfamily II DN 67.1 13 0.00029 48.7 7.8 67 1085-1158 102-179 (513)
202 PRK14701 reverse gyrase; Provi 66.6 17 0.00037 53.6 9.4 61 1081-1144 121-187 (1638)
203 KOG0291|consensus 65.0 5.1E+02 0.011 35.5 21.3 158 321-507 394-558 (893)
204 TIGR01389 recQ ATP-dependent D 61.4 27 0.00059 46.6 9.3 62 1079-1143 50-111 (591)
205 TIGR00614 recQ_fam ATP-depende 60.5 27 0.00059 45.2 8.9 62 1080-1144 49-110 (470)
206 smart00589 PRY associated with 60.0 9.4 0.0002 33.7 3.2 25 1411-1435 3-28 (52)
207 COG1198 PriA Primosomal protei 59.0 15 0.00032 49.9 6.1 90 1066-1159 224-319 (730)
208 KOG1274|consensus 58.9 6.9E+02 0.015 35.0 21.2 71 276-350 13-87 (933)
209 PRK11634 ATP-dependent RNA hel 58.4 26 0.00057 47.2 8.4 69 1083-1158 75-154 (629)
210 PRK11776 ATP-dependent RNA hel 58.1 19 0.0004 46.5 6.8 69 1083-1158 73-152 (460)
211 PF07569 Hira: TUP1-like enhan 57.4 31 0.00067 40.4 7.7 74 425-498 13-94 (219)
212 KOG0347|consensus 56.9 19 0.00041 46.6 6.1 52 1085-1143 266-321 (731)
213 KOG0646|consensus 56.9 3.7E+02 0.0079 34.8 16.8 141 280-450 95-245 (476)
214 COG4581 Superfamily II RNA hel 56.5 39 0.00084 47.5 9.4 88 1083-1173 380-516 (1041)
215 KOG0293|consensus 54.9 1.7E+02 0.0036 37.2 13.3 106 382-500 357-471 (519)
216 KOG1240|consensus 54.4 2.3E+02 0.005 40.5 15.6 158 220-405 1050-1219(1431)
217 PHA03098 kelch-like protein; P 54.3 3.7E+02 0.0081 35.3 17.9 17 332-349 335-351 (534)
218 PHA03098 kelch-like protein; P 53.9 54 0.0012 43.1 10.1 15 182-196 289-303 (534)
219 PF07177 Neuralized: Neuralize 53.8 38 0.00083 32.6 6.3 63 1413-1476 3-68 (69)
220 cd00268 DEADc DEAD-box helicas 53.2 38 0.00082 38.2 7.5 69 1083-1158 70-148 (203)
221 TIGR03548 mutarot_permut cycli 52.8 5.2E+02 0.011 31.7 17.7 17 182-198 8-24 (323)
222 PLN02153 epithiospecifier prot 52.4 5.4E+02 0.012 31.8 23.4 18 331-349 129-146 (341)
223 COG0653 SecA Preprotein transl 52.3 23 0.00051 48.3 6.3 82 1067-1153 409-495 (822)
224 KOG4693|consensus 52.0 2.6E+02 0.0056 33.7 13.6 64 278-348 80-147 (392)
225 KOG0925|consensus 50.7 62 0.0013 41.6 9.0 117 1041-1164 207-342 (699)
226 TIGR01054 rgy reverse gyrase. 50.3 32 0.0007 49.5 7.6 60 1082-1144 121-187 (1171)
227 PHA02713 hypothetical protein; 47.2 89 0.0019 41.7 10.5 19 278-296 342-360 (557)
228 COG4889 Predicted helicase [Ge 46.6 9.2 0.0002 51.4 1.3 88 1083-1173 461-566 (1518)
229 PRK04537 ATP-dependent RNA hel 46.5 42 0.00092 44.7 7.4 54 1083-1143 85-142 (572)
230 cd01524 RHOD_Pyr_redox Member 46.3 54 0.0012 32.3 6.4 45 1073-1117 41-86 (90)
231 PF07569 Hira: TUP1-like enhan 46.0 84 0.0018 36.8 8.9 33 211-244 6-38 (219)
232 KOG4441|consensus 44.5 1.9E+02 0.0041 38.9 12.8 200 180-399 325-530 (571)
233 PRK10590 ATP-dependent RNA hel 41.6 77 0.0017 41.0 8.5 68 1084-1158 77-154 (456)
234 PRK11192 ATP-dependent RNA hel 41.6 71 0.0015 40.8 8.2 69 1083-1158 74-152 (434)
235 PRK01297 ATP-dependent RNA hel 41.4 73 0.0016 41.4 8.3 55 1083-1143 163-221 (475)
236 PRK11057 ATP-dependent DNA hel 39.5 89 0.0019 42.1 8.9 62 1079-1143 62-123 (607)
237 PLN03137 ATP-dependent DNA hel 39.4 96 0.0021 44.3 9.1 61 1080-1143 498-560 (1195)
238 KOG1900|consensus 39.1 6E+02 0.013 37.0 16.2 203 184-398 95-338 (1311)
239 PF04841 Vps16_N: Vps16, N-ter 38.9 9.7E+02 0.021 30.8 20.1 189 277-499 90-287 (410)
240 TIGR02658 TTQ_MADH_Hv methylam 38.2 4.2E+02 0.0091 33.5 13.7 75 324-399 40-124 (352)
241 PLN02153 epithiospecifier prot 37.4 8.8E+02 0.019 29.9 23.6 18 482-500 244-261 (341)
242 PHA02790 Kelch-like protein; P 36.4 1.3E+02 0.0029 39.2 9.5 15 282-296 357-371 (480)
243 PHA02790 Kelch-like protein; P 36.3 1.8E+02 0.0038 38.1 10.6 14 283-296 314-327 (480)
244 KOG0330|consensus 36.3 1.1E+02 0.0025 38.5 8.1 77 1075-1158 119-209 (476)
245 PF04841 Vps16_N: Vps16, N-ter 36.2 1.1E+03 0.023 30.5 19.9 70 219-294 81-153 (410)
246 KOG4441|consensus 36.1 1.6E+02 0.0034 39.5 10.2 154 180-348 373-530 (571)
247 KOG0291|consensus 32.5 1.5E+03 0.033 31.3 28.6 120 374-504 300-427 (893)
248 PRK04837 ATP-dependent RNA hel 32.2 1.3E+02 0.0029 38.3 8.4 69 1083-1158 84-162 (423)
249 PRK05560 DNA gyrase subunit A; 30.8 1.7E+03 0.037 31.4 22.6 210 227-450 547-770 (805)
250 KOG1274|consensus 30.7 6.4E+02 0.014 35.2 14.0 71 378-450 12-82 (933)
251 smart00588 NEUZ domain in neur 30.3 4.9E+02 0.011 27.9 10.9 65 1413-1478 4-71 (123)
252 KOG0278|consensus 30.2 5E+02 0.011 31.3 11.4 21 480-500 268-288 (334)
253 COG4257 Vgb Streptogramin lyas 30.2 2.6E+02 0.0056 34.1 9.4 141 276-450 61-206 (353)
254 PLN00181 protein SPA1-RELATED; 29.8 1.7E+03 0.037 31.0 34.5 182 280-499 547-738 (793)
255 COG4257 Vgb Streptogramin lyas 29.7 2.4E+02 0.0051 34.4 9.0 141 227-397 62-205 (353)
256 COG1200 RecG RecG-like helicas 29.4 2E+02 0.0044 38.9 9.3 74 1082-1158 311-389 (677)
257 KOG0339|consensus 29.2 1.4E+02 0.003 38.9 7.3 69 1083-1158 297-375 (731)
258 KOG1001|consensus 28.5 27 0.00059 47.2 1.4 112 1069-1183 520-646 (674)
259 cd02974 AhpF_NTD_N Alkyl hydro 27.9 43 0.00093 34.2 2.4 24 1527-1550 63-86 (94)
260 KOG0316|consensus 27.9 8E+02 0.017 29.5 12.5 38 309-347 134-171 (307)
261 PRK14131 N-acetylneuraminic ac 27.7 1.2E+03 0.026 29.3 15.7 215 278-497 75-350 (376)
262 cd01523 RHOD_Lact_B Member of 26.4 98 0.0021 30.9 4.7 36 1082-1117 61-96 (100)
263 PTZ00110 helicase; Provisional 25.1 1.7E+02 0.0036 39.0 7.7 69 1083-1158 204-282 (545)
264 PRK09401 reverse gyrase; Revie 25.0 1.4E+02 0.0031 43.3 7.5 59 1082-1143 123-187 (1176)
265 KOG0331|consensus 24.7 2.2E+02 0.0047 37.7 8.2 69 1083-1158 166-244 (519)
266 KOG1240|consensus 24.4 9.7E+02 0.021 34.9 14.2 165 373-556 1050-1226(1431)
267 cd00200 WD40 WD40 domain, foun 24.4 1E+03 0.022 26.5 32.3 57 280-349 65-123 (289)
268 KOG2106|consensus 24.2 1.7E+03 0.037 29.5 15.3 181 227-447 167-352 (626)
269 PF14041 Lipoprotein_21: LppP/ 24.1 1.3E+02 0.0029 30.2 5.0 52 1526-1592 26-77 (89)
270 TIGR01063 gyrA DNA gyrase, A s 24.1 2.2E+03 0.048 30.4 22.7 162 227-398 545-716 (800)
271 KOG1587|consensus 23.7 1.9E+03 0.042 29.6 18.8 18 432-449 358-375 (555)
272 COG4451 RbcS Ribulose bisphosp 23.7 2.8E+02 0.0062 29.7 7.3 25 1409-1438 85-109 (127)
273 smart00450 RHOD Rhodanese Homo 23.1 1.2E+02 0.0025 29.3 4.4 36 1082-1117 56-92 (100)
274 KOG0278|consensus 22.9 1.2E+03 0.025 28.4 12.7 83 266-369 144-228 (334)
275 KOG0649|consensus 22.8 1.4E+03 0.031 27.7 16.7 34 282-315 75-109 (325)
276 PF00270 DEAD: DEAD/DEAH box h 22.5 3.4E+02 0.0074 29.2 8.4 69 1083-1158 45-124 (169)
277 TIGR01062 parC_Gneg DNA topois 22.2 2.3E+03 0.05 29.9 18.3 161 227-407 493-661 (735)
278 PF06433 Me-amine-dh_H: Methyl 21.6 4.1E+02 0.0089 33.5 9.4 159 326-499 32-213 (342)
279 TIGR01063 gyrA DNA gyrase, A s 21.0 2.5E+03 0.054 29.9 23.4 209 276-501 544-771 (800)
280 KOG0949|consensus 21.0 1.2E+02 0.0027 42.1 5.1 87 1111-1206 967-1062(1330)
281 PRK13766 Hef nuclease; Provisi 20.9 2E+02 0.0044 39.7 7.6 71 1082-1160 58-138 (773)
282 cd01518 RHOD_YceA Member of th 20.4 1.3E+02 0.0029 30.1 4.3 37 1081-1117 60-97 (101)
283 TIGR01062 parC_Gneg DNA topois 20.3 2.5E+03 0.054 29.6 18.0 153 277-450 493-652 (735)
No 1
>KOG0331|consensus
Probab=100.00 E-value=1.5e-50 Score=493.48 Aligned_cols=311 Identities=20% Similarity=0.288 Sum_probs=279.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+++|++.+|.+..... .+ .+..-+++++||||||.||.+.+..+..+..+ ++.+++||+++
T Consensus 142 TLay~lP~i~~l~~~~~~~---~~--~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~-----------~~~cvyGG~~~ 205 (519)
T KOG0331|consen 142 TLAYLLPAIVHLNNEQGKL---SR--GDGPIVLVLAPTRELAVQVQAEAREFGKSLRL-----------RSTCVYGGAPK 205 (519)
T ss_pred hhhhhhHHHHHHHhccccc---cC--CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCc-----------cEEEEeCCCCc
Confidence 5678999999999852222 11 24556799999999999999999988887774 88999999999
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh-HHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV-NKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L-pk~ 996 (1858)
++|..+++++++++++||+|++| ..+..+++...++||||||| |++|||+++ ++.|+..+ +..
T Consensus 206 ~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr----------MldmGFe~q----I~~Il~~i~~~~ 271 (519)
T KOG0331|consen 206 GPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR----------MLDMGFEPQ----IRKILSQIPRPD 271 (519)
T ss_pred cHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh----------hhccccHHH----HHHHHHhcCCCc
Confidence 99999999999999999999998 66677788899999999999 999999999 99999999 678
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC----CcccEEEEEEECChhhH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS----SVHLVKQYLIRTPKSQK 1072 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~----~~~~I~Q~~~~v~~~~K 1072 (1858)
|||+|| |||+|.+++.+|.+||++|+.|.+... +..+|.|.+..|++..|
T Consensus 272 rQtlm~--------------------------saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 272 RQTLMF--------------------------SATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred ccEEEE--------------------------eeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 899999 999999999999999999999988643 34459999999998888
Q ss_pred HHHHHHhhcC------CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc
Q psy15269 1073 IVNLLSFLEG------KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF 1146 (1858)
Q Consensus 1073 l~~Ll~lL~~------~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA 1146 (1858)
...|..+|.. +|+||||+||+.|++|+..|+..++++.+|||+++ |.||..+|+.||+|+..|||||||||
T Consensus 326 ~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~s---Q~eR~~~L~~FreG~~~vLVATdVAa 402 (519)
T KOG0331|consen 326 LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKS---QSERDWVLKGFREGKSPVLVATDVAA 402 (519)
T ss_pred HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeeccccc---HHHHHHHHHhcccCCcceEEEccccc
Confidence 7777766643 69999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCc
Q psy15269 1147 IGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1147 RGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~ 1210 (1858)
|||||++|++|||||+|.++|+||||+ |+++ +|++|+++ .+......+.+.++...+.+|+.+
T Consensus 403 RGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~-~~~~~a~~l~~~l~e~~q~v~~~l 471 (519)
T KOG0331|consen 403 RGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTS-DNAKLARELIKVLREAGQTVPPDL 471 (519)
T ss_pred ccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeH-HHHHHHHHHHHHHHHccCCCChHH
Confidence 999999999999999999999999999 2333 99999998 999999999999999999999733
No 2
>KOG0330|consensus
Probab=100.00 E-value=1.2e-45 Score=424.58 Aligned_cols=302 Identities=19% Similarity=0.239 Sum_probs=270.2
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+|++|=+-+++ -.+.++.|+|+||.||+.+...+.++..+ +..++.||+.|
T Consensus 112 T~afaLPIl~~LL~~p~~-----------~~~lVLtPtRELA~QI~e~fe~Lg~~igl-----------r~~~lvGG~~m 169 (476)
T KOG0330|consen 112 TGAFALPILQRLLQEPKL-----------FFALVLTPTRELAQQIAEQFEALGSGIGL-----------RVAVLVGGMDM 169 (476)
T ss_pred hhhhHHHHHHHHHcCCCC-----------ceEEEecCcHHHHHHHHHHHHHhccccCe-----------EEEEEecCchH
Confidence 455788888877653333 35689999999999999999999999998 55888999999
Q ss_pred chhhhhhhhhcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..|..++.+-++++++||+++.++.+ --+.....++|+||||| +++|.|.++ +..|++.+|+.
T Consensus 170 ~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr----------lLd~dF~~~----ld~ILk~ip~e 235 (476)
T KOG0330|consen 170 MLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR----------LLDMDFEEE----LDYILKVIPRE 235 (476)
T ss_pred HHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh----------hhhhhhHHH----HHHHHHhcCcc
Confidence 99999999999999999999998444 22333455666777776 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC--CcccEEEEEEECChhhHHH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS--SVHLVKQYLIRTPKSQKIV 1074 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~--~~~~I~Q~~~~v~~~~Kl~ 1074 (1858)
|||+|| |||||+.|+++-+.-+++|+.|.+... ....++|+|++++..+|-.
T Consensus 236 rqt~Lf--------------------------sATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~ 289 (476)
T KOG0330|consen 236 RQTFLF--------------------------SATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT 289 (476)
T ss_pred ceEEEE--------------------------EeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch
Confidence 999999 999999999999999999999988654 4445999999999999999
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.|+++++. ...||||+|+.++++++-.|+..|+.+..|||+|+ |..|..++++|++|..+||||||||+|||||
T Consensus 290 yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqms---q~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi 366 (476)
T KOG0330|consen 290 YLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMS---QSKRLGALNKFKAGARSILVCTDVASRGLDI 366 (476)
T ss_pred hHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhh---HHHHHHHHHHHhccCCcEEEecchhcccCCC
Confidence 99999875 78999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
|.|++|||||+|.+..+||||+ ||+. .+|+||+. .|...+++||..++++..+.+
T Consensus 367 p~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq-yDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 367 PHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ-YDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred CCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh-hhhHHHHHHHHHHhcCCCccC
Confidence 9999999999999999999999 4444 99999999 999999999999999887644
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-44 Score=452.25 Aligned_cols=303 Identities=21% Similarity=0.253 Sum_probs=270.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|+|+.|++. ... .... +.++.|||+||.||...+..+..+.+ .++...++||..+
T Consensus 80 T~Af~lP~l~~l~~~-~~~-------~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~----------~~~~~~i~GG~~~ 140 (513)
T COG0513 80 TAAFLLPLLQKILKS-VER-------KYVS-ALILAPTRELAVQIAEELRKLGKNLG----------GLRVAVVYGGVSI 140 (513)
T ss_pred HHHHHHHHHHHHhcc-ccc-------CCCc-eEEECCCHHHHHHHHHHHHHHHhhcC----------CccEEEEECCCCH
Confidence 667899999998865 111 0111 79999999999999999999988874 2357889999999
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
..|...++++++++++||+|++| ..+..+......+||||||| |++|||.++ ++.|++.+|+.|
T Consensus 141 ~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr----------mLd~Gf~~~----i~~I~~~~p~~~ 206 (513)
T COG0513 141 RKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR----------MLDMGFIDD----IEKILKALPPDR 206 (513)
T ss_pred HHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh----------hhcCCCHHH----HHHHHHhCCccc
Confidence 99999999999999999999998 44455777788889999988 999999999 999999999999
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC----cccEEEEEEECChhh-H
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS----VHLVKQYLIRTPKSQ-K 1072 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~----~~~I~Q~~~~v~~~~-K 1072 (1858)
|+++| |||+|+.|+++++.+|+||+.|.+..+. ...|+|+|+.++..+ |
T Consensus 207 qtllf--------------------------SAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k 260 (513)
T COG0513 207 QTLLF--------------------------SATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEK 260 (513)
T ss_pred EEEEE--------------------------ecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHH
Confidence 99999 9999999999999999999999887443 345999999999776 9
Q ss_pred HHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCC
Q psy15269 1073 IVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149 (1858)
Q Consensus 1073 l~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGL 1149 (1858)
+..|.++++. .++||||+|++.|++|+..|+..|+++..|||+|+ |++|.+++++|++|+++||||||||||||
T Consensus 261 ~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~---q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 261 LELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLP---QEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCC---HHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 9999999975 67999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1150 DFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1150 DIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
||++|+||||||+|.++++||||| ||++ .|++|+++..|...+..|++.++....
T Consensus 338 Di~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 338 DIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred CccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999 3333 999999984499999999999877633
No 4
>KOG0333|consensus
Probab=100.00 E-value=1.4e-43 Score=418.09 Aligned_cols=358 Identities=18% Similarity=0.218 Sum_probs=288.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHhhhhhhhhHHHHHHHHhhccccccCccHHHHHHHHHHHHhhhccccccccccccC
Q psy15269 789 VIDILERSIAWVNQGKDIEVLNELLYNSLAGKILFSIVHSLLINIHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETN 868 (1858)
Q Consensus 789 ~~~~l~~a~~l~~~~~~~~~l~~vl~~~~~g~ll~~~~~~l~ll~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~ 868 (1858)
+.-|-++|+=+..|.+++..+.+ ..+|+- +.+++|||..+-++..+.+...+. .+
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaE----TgsGkt-------------------aaf~ipLl~~IsslP~~~~~en~~--~g 322 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAE----TGSGKT-------------------AAFLIPLLIWISSLPPMARLENNI--EG 322 (673)
T ss_pred CchHHHhhccchhccCCeeeEEe----ccCCcc-------------------ccchhhHHHHHHcCCCcchhhhcc--cC
Confidence 55667888888888877655554 233332 236677777777766555433333 45
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcc--c
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPN--Y 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~--~ 946 (1858)
....++.|+|+||+||-.....++++.-. +...+.||.....|-.+++.|++++++||++|+|..+ +
T Consensus 323 pyaiilaptReLaqqIeeEt~kf~~~lg~-----------r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 323 PYAIILAPTRELAQQIEEETNKFGKPLGI-----------RTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred ceeeeechHHHHHHHHHHHHHHhcccccc-----------eEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH
Confidence 56789999999999999888877765543 6678899999999999999999999999999998444 4
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccc------cccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDD------NNVSMGVT 1020 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~------~~~s~~~~ 1020 (1858)
.-.....+++||+||| |.||||+++ +..|++.+|..- ..+.+...+ .+.+- ..
T Consensus 392 lvl~qctyvvldeadr----------miDmgfE~d----v~~iL~~mPssn------~k~~tde~~~~~~~~~~~~~-~k 450 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADR----------MIDMGFEPD----VQKILEQMPSSN------AKPDTDEKEGEERVRKNFSS-SK 450 (673)
T ss_pred HHhccCceEeccchhh----------hhcccccHH----HHHHHHhCCccc------cCCCccchhhHHHHHhhccc-cc
Confidence 4445566778888877 999999999 999999988421 011111100 11122 22
Q ss_pred ccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHH
Q psy15269 1021 STQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDA 1095 (1858)
Q Consensus 1021 ~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~a 1095 (1858)
.+.++.|++||||+.+++||+.||.+|+.+.++....+ .++|.++.++..+|...|..++.. .++|||+|||+.|
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhH
Confidence 66788888999999999999999999999998755443 499999999999999999999875 7899999999999
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--
Q psy15269 1096 SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-- 1173 (1858)
Q Consensus 1096 d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-- 1173 (1858)
+.|++.|.+.||.+..|||+.+ |+||..+|..||+|...||||||||+||||||||+||||||++.++++|+|||
T Consensus 531 d~lAk~LeK~g~~~~tlHg~k~---qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 531 DALAKILEKAGYKVTTLHGGKS---QEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGR 607 (673)
T ss_pred HHHHHHHhhccceEEEeeCCcc---HHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcc
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ---cCcc-eEEEEecCcccHHHHHHHHHHHhh-cCCCCC
Q psy15269 1174 ---AGHK-EAIAFYDPVADIGLASSLIKLLEY-SNKHVP 1207 (1858)
Q Consensus 1174 ---ag~~-~aitfvt~~~e~~~l~~Ie~~l~~-~~q~ip 1207 (1858)
||+. +||+|+++ +|...+.+|.+.+.. .....|
T Consensus 608 TgRAGk~GtaiSflt~-~dt~v~ydLkq~l~es~~s~~P 645 (673)
T KOG0333|consen 608 TGRAGKSGTAISFLTP-ADTAVFYDLKQALRESVKSHCP 645 (673)
T ss_pred ccccccCceeEEEecc-chhHHHHHHHHHHHHhhhccCC
Confidence 5554 99999999 777777777777775 334444
No 5
>KOG0328|consensus
Probab=100.00 E-value=9.6e-44 Score=393.95 Aligned_cols=287 Identities=19% Similarity=0.221 Sum_probs=260.6
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SP 944 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~ 944 (1858)
.+..+.++.|+|+||.||+.....+.-.+.++- -.-.||-..+.+++.++-|+..+..||+|++| ..
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~-----------hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr 162 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQC-----------HACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR 162 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceE-----------EEEecCCccchhhhhhcccceEeeCCCchHHHHHHh
Confidence 334579999999999999999988877777744 33479999999999999999999999999997 44
Q ss_pred cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
+-.....+.-.||||||+ |+..||..| +..||+.+|+--|-.++
T Consensus 163 ~~L~tr~vkmlVLDEaDe----------mL~kgfk~Q----iydiyr~lp~~~Qvv~~---------------------- 206 (400)
T KOG0328|consen 163 RSLRTRAVKMLVLDEADE----------MLNKGFKEQ----IYDIYRYLPPGAQVVLV---------------------- 206 (400)
T ss_pred ccccccceeEEEeccHHH----------HHHhhHHHH----HHHHHHhCCCCceEEEE----------------------
Confidence 444444567788999998 888899999 99999999999999999
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L 1098 (1858)
|||+|.+|.++.++||.||++|.++..+.+. |+|+|+.+++++ |+..|+++... .++|||||||+.+++|
T Consensus 207 ----SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwL 282 (400)
T KOG0328|consen 207 ----SATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 282 (400)
T ss_pred ----eccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHH
Confidence 9999999999999999999999998776664 999999998877 88888877654 8999999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI----- 1173 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI----- 1173 (1858)
.+.|++..+.++++||+|. |++|++++++||+|+.+|||+|||.|||||+|.|++|||||+|.+.|.|||||
T Consensus 283 tekm~~~nftVssmHGDm~---qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 283 TEKMREANFTVSSMHGDME---QKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred HHHHHhhCceeeeccCCcc---hhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccc
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 -AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 -ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
|++|.||.|+.. +|.+.+++|++++.....++|-
T Consensus 360 FGRkGvainFVk~-~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 360 FGRKGVAINFVKS-DDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred cCCcceEEEEecH-HHHHHHHHHHHHHhhhcccccc
Confidence 556699999998 9999999999999999999885
No 6
>KOG0336|consensus
Probab=100.00 E-value=3.6e-43 Score=403.13 Aligned_cols=283 Identities=20% Similarity=0.268 Sum_probs=256.2
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+..+.|+|+||++|-.... ++..+=+++.+|+||-.-..|+.|++++++++++||+++.| ..+..
T Consensus 296 ~~lvl~ptreLalqie~e~~------------kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i 363 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVK------------KYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVI 363 (629)
T ss_pred ceEEEeccHHHHHHHHhHHh------------HhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCee
Confidence 35889999999999954432 23445567899999999999999999999999999999997 55577
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
++.+.-++||||||| |+||||+++ |+.|+--+...|||.|-
T Consensus 364 ~l~siTYlVlDEADr----------MLDMgFEpq----IrkilldiRPDRqtvmT------------------------- 404 (629)
T KOG0336|consen 364 NLASITYLVLDEADR----------MLDMGFEPQ----IRKILLDIRPDRQTVMT------------------------- 404 (629)
T ss_pred eeeeeEEEEecchhh----------hhcccccHH----HHHHhhhcCCcceeeee-------------------------
Confidence 778888999999999 999999999 99999999999999998
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCc---ccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSV---HLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~---~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+|+.|++||..||++|+.+-++.-.. ..++|.++.....+|++.+-.++.. .|+||||..|..||.|..
T Consensus 405 -SATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSS 483 (629)
T KOG0336|consen 405 -SATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSS 483 (629)
T ss_pred -cccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccc
Confidence 99999999999999999999998765443 3489999888888998877777653 899999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG 1175 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag 1175 (1858)
-|.-.|+.+.+|||+.. |.+|+.+++.||+|+++||||||+|+||||+++|+||+|||+|.++|.||||| ||
T Consensus 484 d~~l~gi~~q~lHG~r~---Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaG 560 (629)
T KOG0336|consen 484 DFCLKGISSQSLHGNRE---QSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAG 560 (629)
T ss_pred hhhhcccchhhccCChh---hhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCC
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999 44
Q ss_pred cc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1176 HK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1176 ~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+. ++++|++. +|..++..|.+.+.++.|++|+
T Consensus 561 r~G~sis~lt~-~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 561 RTGTSISFLTR-NDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred CCcceEEEEeh-hhHHHHHHHHHHHHHhhhhCcH
Confidence 33 99999998 9999999999999999999997
No 7
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.3e-40 Score=394.74 Aligned_cols=352 Identities=27% Similarity=0.472 Sum_probs=281.4
Q ss_pred ceeeCCeEEEEcCCCCCCCCcCCCCC-cccccccCCC----CCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCC--
Q psy15269 183 ISVAHSKVYTWGCNLHHQILDEVRGK-CSRPRLQSLP----SNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLAN-- 252 (1858)
Q Consensus 183 ~a~s~g~Vy~WGsN~~GQLG~g~~~~-~~~P~~v~~~----~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~-- 252 (1858)
..+.-..||+||+|..+|||.|..+. ...|+..+.. ..|++++||..|+++|++||+||+||.| ++|...
T Consensus 63 ~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~ 142 (476)
T COG5184 63 LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHK 142 (476)
T ss_pred hhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccc
Confidence 33456789999999999999998765 4788888776 4699999999999999999999999998 444222
Q ss_pred --------------CCCCCCceeecCc---cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCccc------
Q psy15269 253 --------------TTIQPLPKRVPLE---AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ------ 309 (1858)
Q Consensus 253 --------------~~~~~~P~~V~~~---~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~------ 309 (1858)
.....+|.+++.. ..-.+|++++||++++++++++|+||+||.+..+.++.+...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~ 222 (476)
T COG5184 143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ 222 (476)
T ss_pred ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceee
Confidence 1124577777762 11235788889999999999999999999999999888854432
Q ss_pred ccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccC---CCceEEeecCceEEE
Q psy15269 310 RRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTEL---SDVGAVSCGESHTLV 386 (1858)
Q Consensus 310 ~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l---~~I~~IAcG~~HTla 386 (1858)
.+|.++. .+.|+++++|.+|.++|+++|++|+||+|..||||.........+..+..+ ..|+.|+||.+|+++
T Consensus 223 ~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~a 298 (476)
T COG5184 223 FTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLA 298 (476)
T ss_pred eeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEE
Confidence 3444443 467999999999999999999999999999999999988777766666543 347789999999999
Q ss_pred EEcCCCEEEEEeCCCCCCCCCCCCC----ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCC
Q psy15269 387 LSQDGHTVWSMGSGNLGKLGHEDTG----KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSS 456 (1858)
Q Consensus 387 Lt~dG~tVysWG~N~~GQLG~g~~~----~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss 456 (1858)
|+++|+ ||+||.|.+||+|.+... ....|+....+.+..|..|++|..|+++|..+|.||+|| +|....
T Consensus 299 l~~~G~-i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~ 377 (476)
T COG5184 299 LDEDGE-IYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEE 377 (476)
T ss_pred EcCCCe-EEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCccc
Confidence 999995 999999999999998221 234555556667778999999999999999999999999 454442
Q ss_pred C-ccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEec
Q psy15269 457 S-ISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAG 533 (1858)
Q Consensus 457 ~-~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G 533 (1858)
. .....|.++... .++.+++||..|.++.+.+|+||+||+|++||||.|+.......|..+.. ++...++..-||
T Consensus 378 ~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~ 455 (476)
T COG5184 378 ITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYG 455 (476)
T ss_pred ceeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccCCCceEEeccC
Confidence 1 123334444332 37999999999999999999999999999999999998877778888864 566667777777
Q ss_pred CcceEEEe
Q psy15269 534 SLFSIAYT 541 (1858)
Q Consensus 534 ~~hS~alt 541 (1858)
.++++...
T Consensus 456 ~~~~v~~~ 463 (476)
T COG5184 456 NQFSVIEE 463 (476)
T ss_pred cceEEEec
Confidence 76666554
No 8
>KOG0342|consensus
Probab=100.00 E-value=6.8e-41 Score=395.65 Aligned_cols=296 Identities=17% Similarity=0.214 Sum_probs=260.3
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+|+|..+.|-+..-.. ....-+.||.|+|+||+|+-..+.-++.+.|- . -=.++.||...
T Consensus 133 TlAFLiPaie~l~k~~~~~-------r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~-~---------~v~~viGG~~~ 195 (543)
T KOG0342|consen 133 TLAFLLPAIELLRKLKFKP-------RNGTGVLIICPTRELAMQIFAEAKELLKYHES-I---------TVGIVIGGNNF 195 (543)
T ss_pred eeeehhHHHHHHHhcccCC-------CCCeeEEEecccHHHHHHHHHHHHHHHhhCCC-c---------ceEEEeCCccc
Confidence 5678999999988776555 35666799999999999999999998888741 1 12578999999
Q ss_pred chhhhhhhhhcccccccccccccCcccccc---ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESD---VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~---~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..+...+.+++.+++||||||+|+....+. .....+|+||||| +++|||.++ |+.|++.+|+.
T Consensus 196 ~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADr----------lLd~GF~~d----i~~Ii~~lpk~ 261 (543)
T KOG0342|consen 196 SVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADR----------LLDIGFEED----VEQIIKILPKQ 261 (543)
T ss_pred hHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchh----------hhhcccHHH----HHHHHHhcccc
Confidence 999999999999999999999996654442 1123566888877 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcC-CCEEEEEccCC----cccEEEEEEECChhh
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVE-DPIMKLVKPSS----VHLVKQYLIRTPKSQ 1071 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~-dpv~I~v~~~~----~~~I~Q~~~~v~~~~ 1071 (1858)
|||+|| |||.|++|+++++..|+ ||++|.+.... ...+.|.|+.++...
T Consensus 262 rqt~LF--------------------------SAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 262 RQTLLF--------------------------SATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred ceeeEe--------------------------eCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 999999 99999999999999885 69999885432 223999999999999
Q ss_pred HHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1072 KIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1072 Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
++..|+.+|+. .|+||||.|+..+.++++.|+...++|..|||+++ |..|..+..+|++.+..||||||||||
T Consensus 316 ~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~---Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQK---QNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCc---ccccchHHHHHhhcccceEEecchhhc
Confidence 99999998875 78999999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHHH
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSLI 1196 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie 1196 (1858)
|+|||+|++||+||+|.++++||||+ ++.|.++.|+.| .|..+++.|+
T Consensus 393 GlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p-~El~Flr~LK 446 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP-WELGFLRYLK 446 (543)
T ss_pred cCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh-hHHHHHHHHh
Confidence 99999999999999999999999999 333489999999 9999999988
No 9
>KOG0338|consensus
Probab=100.00 E-value=3.2e-40 Score=388.08 Aligned_cols=295 Identities=18% Similarity=0.228 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCch
Q psy15269 842 RYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPST 921 (1858)
Q Consensus 842 ~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~ 921 (1858)
-+.+|+|+-|==-.+.. ...-|+++-|||+||.|+-.....+.+...+ .-.+..||+....
T Consensus 234 AF~lPiLERLlYrPk~~--------~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I-----------~~~L~vGGL~lk~ 294 (691)
T KOG0338|consen 234 AFALPILERLLYRPKKV--------AATRVLVLVPTRELAIQVHSVTKQLAQFTDI-----------TVGLAVGGLDLKA 294 (691)
T ss_pred hhHHHHHHHHhcCcccC--------cceeEEEEeccHHHHHHHHHHHHHHHhhccc-----------eeeeeecCccHHH
Confidence 46777777554333333 4456799999999999998888888888776 4488999999999
Q ss_pred hhhhhhhhcccccccccccccCccc---cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 922 AIIDIDKFVRDMRHVSNNILMSPNY---ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 922 q~~dl~~~v~~l~~t~~~ll~~~~~---~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
|-..|.+..|++++||||+||+.+. -+..+..-+|||+||| |++.||+.+ |.+|++.+|+.||
T Consensus 295 QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR----------MLeegFade----mnEii~lcpk~RQ 360 (691)
T KOG0338|consen 295 QEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR----------MLEEGFADE----MNEIIRLCPKNRQ 360 (691)
T ss_pred HHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH----------HHHHHHHHH----HHHHHHhcccccc
Confidence 9999999999999999999984442 2334566677999988 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECC---hhhHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTP---KSQKI 1073 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~---~~~Kl 1073 (1858)
|||| ||||.++|.+|+.--|++|++|.+.+...+ .+.|.|+.+. ..++-
T Consensus 361 TmLF--------------------------SATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 361 TMLF--------------------------SATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred ceee--------------------------hhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccH
Confidence 9999 999999999999999999999999866544 4899998775 23344
Q ss_pred HHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCC
Q psy15269 1074 VNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGND 1150 (1858)
Q Consensus 1074 ~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLD 1150 (1858)
..|..++. ..++|||+.||+.|.++.-.|--.|+.+..|||.++ |.||..+|++||++++.|||||||||||||
T Consensus 415 a~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLt---Q~QRlesL~kFk~~eidvLiaTDvAsRGLD 491 (691)
T KOG0338|consen 415 AMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLT---QEQRLESLEKFKKEEIDVLIATDVASRGLD 491 (691)
T ss_pred HHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhccccc---HHHHHHHHHHHHhccCCEEEEechhhccCC
Confidence 44555554 489999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHH
Q psy15269 1151 FTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLL 1199 (1858)
Q Consensus 1151 Ip~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l 1199 (1858)
|++|..||||++|.+.++|+||+ ||+. +++||+.. .|+.+++.|.+--
T Consensus 492 I~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE-~dRkllK~iik~~ 545 (691)
T KOG0338|consen 492 IEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGE-SDRKLLKEIIKSS 545 (691)
T ss_pred ccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecc-ccHHHHHHHHhhh
Confidence 99999999999999999999999 4444 99999998 8999999988764
No 10
>KOG0335|consensus
Probab=100.00 E-value=2e-40 Score=398.91 Aligned_cols=317 Identities=20% Similarity=0.237 Sum_probs=277.4
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
-..+|+|++..+=+-+...|....-+ .-.-..|+.|||+||-||=..+..+..+ .|+++...+||...
T Consensus 125 T~aFLiPii~~~~~~~~~~~~~~~~~-~~P~~lIlapTReL~~Qi~nea~k~~~~-----------s~~~~~~~ygg~~~ 192 (482)
T KOG0335|consen 125 TAAFLIPIISYLLDEGPEDRGESGGG-VYPRALILAPTRELVDQIYNEARKFSYL-----------SGMKSVVVYGGTDL 192 (482)
T ss_pred hHHHHHHHHHHHHhcCcccCcccCCC-CCCceEEEeCcHHHhhHHHHHHHhhccc-----------ccceeeeeeCCcch
Confidence 56799999999988888775333221 1123489999999999997777766554 45678899999999
Q ss_pred chhhhhhhhhcccccccccccccCc--cccccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHH-
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSP--NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNK- 995 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~--~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk- 995 (1858)
+.|.+.+.++++++++||++|.+-. +-..+....++||||||| |+| |||.|+ |+.|+.++..
T Consensus 193 ~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADr----------MlD~mgF~p~----Ir~iv~~~~~~ 258 (482)
T KOG0335|consen 193 GAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADR----------MLDEMGFEPQ----IRKIVEQLGMP 258 (482)
T ss_pred hhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHH----------hhhhcccccc----HHHHhcccCCC
Confidence 9999999999999999999999844 444555566788888888 999 999999 9999999865
Q ss_pred ---HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCC-CEEEEEcc--CCcccEEEEEEECCh
Q psy15269 996 ---FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVED-PIMKLVKP--SSVHLVKQYLIRTPK 1069 (1858)
Q Consensus 996 ---~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~d-pv~I~v~~--~~~~~I~Q~~~~v~~ 1069 (1858)
.|||+|| |||+|..++.++..|+.+ ++++.|.. .+..++.|.+.+|.+
T Consensus 259 ~~~~~qt~mF--------------------------SAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 259 PKNNRQTLLF--------------------------SATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred CccceeEEEE--------------------------eccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 8999999 999999999999999986 88887764 445569999999999
Q ss_pred hhHHHHHHHhhcC------------CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc
Q psy15269 1070 SQKIVNLLSFLEG------------KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS 1137 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~~------------~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ 1137 (1858)
.+|...|++++.. ++++|||+|++.|+.++.+|...++++..|||+.+ |.+|.++++.||+|++.
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~t---q~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRT---QIEREQALNDFRNGKAP 389 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhh---hhHHHHHHHHhhcCCcc
Confidence 9999999988862 37999999999999999999999999999999999 99999999999999999
Q ss_pred EEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1138 LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1138 ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
+||||+||||||||++|+||||||+|.+.++||||| +|++ .|++|++. .+....+.|.+.+..+.|++|+|+.
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~-~~~~i~~~L~~~l~ea~q~vP~wl~ 468 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE-KNQNIAKALVEILTEANQEVPQWLS 468 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc-ccchhHHHHHHHHHHhcccCcHHHH
Confidence 999999999999999999999999999999999999 3333 89999996 8899999999999999999999876
Q ss_pred c
Q psy15269 1212 A 1212 (1858)
Q Consensus 1212 ~ 1212 (1858)
+
T Consensus 469 ~ 469 (482)
T KOG0335|consen 469 E 469 (482)
T ss_pred h
Confidence 5
No 11
>KOG0341|consensus
Probab=100.00 E-value=3.5e-41 Score=384.58 Aligned_cols=303 Identities=20% Similarity=0.238 Sum_probs=263.1
Q ss_pred hhhccccccccccccCccceechHhHHHHHHHHHHhCCcC-----CCCCCCccchhhhccccccccccccCCchhhhhhh
Q psy15269 853 SLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDML-----LGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID 927 (1858)
Q Consensus 853 ~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~-----~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~ 927 (1858)
+.-..+|+... .+...+||.|-|+||-|.=.-+..|. .|.|. |++.+-.||+.+..|..+++
T Consensus 234 eqE~~lPf~~~---EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~----------lRs~LciGG~~v~eql~~v~ 300 (610)
T KOG0341|consen 234 EQEMMLPFARG---EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE----------LRSLLCIGGVPVREQLDVVR 300 (610)
T ss_pred HHHhcCccccC---CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh----------hhhhhhhcCccHHHHHHHHh
Confidence 34455664332 44556999999999998755444432 24444 68899999999999999999
Q ss_pred hhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCC
Q psy15269 928 KFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNA 1007 (1858)
Q Consensus 928 ~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~ 1007 (1858)
+||.++++||+||.|-.. ...+.=.+|| |..+|+||+|.||||+++ ++.||......||||||
T Consensus 301 ~GvHivVATPGRL~DmL~-------KK~~sLd~CR-yL~lDEADRmiDmGFEdd----ir~iF~~FK~QRQTLLF----- 363 (610)
T KOG0341|consen 301 RGVHIVVATPGRLMDMLA-------KKIMSLDACR-YLTLDEADRMIDMGFEDD----IRTIFSFFKGQRQTLLF----- 363 (610)
T ss_pred cCeeEEEcCcchHHHHHH-------HhhccHHHHH-HhhhhhHHHHhhccchhh----HHHHHHHHhhhhheeee-----
Confidence 999999999999987221 1122234677 888888888999999999 99999999999999999
Q ss_pred CCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECChhhHHHHHHHhhcC--C
Q psy15269 1008 PSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQKIVNLLSFLEG--K 1083 (1858)
Q Consensus 1008 ~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~~~Kl~~Ll~lL~~--~ 1083 (1858)
|||||..|+.+|+..|..|+.|.|+.....+ +.|.+.++....|+..|+..|.. .
T Consensus 364 ---------------------SATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~P 422 (610)
T KOG0341|consen 364 ---------------------SATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSP 422 (610)
T ss_pred ---------------------eccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCC
Confidence 9999999999999999999999998766555 66777778889999999999976 8
Q ss_pred cEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC
Q psy15269 1084 RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1084 k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP 1163 (1858)
+++|||..|..+|.+.++|--.|+.+++|||+.+ |++|..+++.||.|+..||||||||+.|||||++.||||||+|
T Consensus 423 pVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKD---QedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP 499 (610)
T KOG0341|consen 423 PVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKD---QEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMP 499 (610)
T ss_pred ceEEEeccccChHHHHHHHHHccceeEEeecCcc---hhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCCh
Confidence 8999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1164 LSINHYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1164 ~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.++|.||||| +.+|.|.||++...+...+-++..++....|++|+.
T Consensus 500 ~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~ 551 (610)
T KOG0341|consen 500 EEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPV 551 (610)
T ss_pred HHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHH
Confidence 9999999999 333489999998889999999999999999999973
No 12
>KOG0340|consensus
Probab=100.00 E-value=7.4e-40 Score=373.43 Aligned_cols=316 Identities=17% Similarity=0.126 Sum_probs=264.3
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccc-
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYE- 947 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~- 947 (1858)
....++.|+|+||+||...+--+.+-+.+ +..+++||..+-+|..+|.+..+++++||+++-+.-.-.
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~l-----------K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNL-----------KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccc-----------eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 35699999999999999988776666665 779999999999999999999999999999998732211
Q ss_pred -----ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 948 -----SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 948 -----~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
.......+++||||| |++-+|.++ |+.|++.+|+.||||+|
T Consensus 145 ~~~~~~~~rlkflVlDEADr----------vL~~~f~d~----L~~i~e~lP~~RQtLlf-------------------- 190 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADR----------VLAGCFPDI----LEGIEECLPKPRQTLLF-------------------- 190 (442)
T ss_pred ccchhhhhceeeEEecchhh----------hhccchhhH----HhhhhccCCCccceEEE--------------------
Confidence 224466778888888 999899999 99999999999999999
Q ss_pred ccccCCCCCCcHhHHHHHHHhcCC--CEEEEEcc--CCcccEEEEEEECChhhHHHHHHHhhcC------CcEEEEecCh
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIEVED--PIMKLVKP--SSVHLVKQYLIRTPKSQKIVNLLSFLEG------KRSLIFVKTY 1092 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~L~d--pv~I~v~~--~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~------~k~IIFvnTk 1092 (1858)
|||+.+.++++-.--.++ +.++.+.+ ...+.+.|.|+.|+...|-..|+++|+. ..++||+||+
T Consensus 191 ------SATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 191 ------SATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred ------EeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehh
Confidence 999999999987766665 44454432 2333489999999999999999999974 5699999999
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhh
Q psy15269 1093 RDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQ 1172 (1858)
Q Consensus 1093 ~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHR 1172 (1858)
+.|+.|+..|+..++.+.++|+.|+ |++|..+|.+||++.++||||||||+||||||.|++|||||+|.+|.+||||
T Consensus 265 r~cQ~l~~~l~~le~r~~~lHs~m~---Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 265 RECQLLSMTLKNLEVRVVSLHSQMP---QKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred HHHHHHHHHHhhhceeeeehhhcch---HHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHh
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred c-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCccccCchhhHhhhhcHHHHHHHHHhhhhhh
Q psy15269 1173 I-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHANGNTLLREVSSNMIHILAIACANHIED 1239 (1858)
Q Consensus 1173 I-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~~~~~~~kia~~rl~~il~~aa~~~ed~ 1239 (1858)
+ ||++ .||+|+++ .|..++..||..++++..+.+......-.-+.++..++....+.+......|.
T Consensus 342 vGRtARAGR~G~aiSivt~-rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~akrea~m~m~~~~F~er 413 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQ-RDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVAKREAEMKMDNNGFGER 413 (442)
T ss_pred hcchhcccCCcceEEEech-hhHHHHHHHHHHHhcccccccccchhhheehhhHHHHHHHHHHHhhhcchhHH
Confidence 9 5555 99999998 99999999999999998887643332222344554444444455544444443
No 13
>KOG0343|consensus
Probab=100.00 E-value=9.2e-40 Score=386.80 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=252.2
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+++|+|++|-+.---- .++.-+.||.|||+||+|+=..+.......-. +..++.||-..
T Consensus 120 TLAFlvPvlE~L~r~kWs~-------~DGlGalIISPTRELA~QtFevL~kvgk~h~f-----------SaGLiiGG~~~ 181 (758)
T KOG0343|consen 120 TLAFLVPVLEALYRLKWSP-------TDGLGALIISPTRELALQTFEVLNKVGKHHDF-----------SAGLIIGGKDV 181 (758)
T ss_pred eeeehHHHHHHHHHcCCCC-------CCCceeEEecchHHHHHHHHHHHHHHhhcccc-----------ccceeecCchh
Confidence 5678999999997753322 56777899999999999998888877776665 44666676553
Q ss_pred chhhhhhhhhccccccccccccc--Ccc-ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPN-YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~-~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
..+...+ ..|.+++-||||+|. ++. +-+......+||||||| |++|||... |.+|++.+|+.
T Consensus 182 k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR----------~LDMGFk~t----L~~Ii~~lP~~ 246 (758)
T KOG0343|consen 182 KFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR----------MLDMGFKKT----LNAIIENLPKK 246 (758)
T ss_pred HHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH----------HHHHhHHHH----HHHHHHhCChh
Confidence 3222222 258899999999995 333 33334456667999988 999999999 99999999999
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC----CcccEEEEEEECChhhH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS----SVHLVKQYLIRTPKSQK 1072 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~----~~~~I~Q~~~~v~~~~K 1072 (1858)
|||||| |||....+++||+--++||.+|.+... ...+++|+|+.++-.+|
T Consensus 247 RQTLLF--------------------------SATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~K 300 (758)
T KOG0343|consen 247 RQTLLF--------------------------SATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDK 300 (758)
T ss_pred heeeee--------------------------ecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhH
Confidence 999999 999999999999999999999998633 33459999999999999
Q ss_pred HHHHHHhhcC---CcEEEEecChHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1073 IVNLLSFLEG---KRSLIFVKTYRDASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1073 l~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
++.|..||+. .++|||+.|++.|.++++.+++ -|++..+|||.|+ |..|..++++|-..+.-||+||||+||
T Consensus 301 i~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~---Q~~R~ev~~~F~~~~~~vLF~TDv~aR 377 (758)
T KOG0343|consen 301 IDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMS---QKKRIEVYKKFVRKRAVVLFCTDVAAR 377 (758)
T ss_pred HHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchh---HHHHHHHHHHHHHhcceEEEeehhhhc
Confidence 9999999986 7899999999999999999997 5999999999999 999999999999989999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc---cC---cceEEEEecCcccHHHHHHHHHH
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI---AG---HKEAIAFYDPVADIGLASSLIKL 1198 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI---ag---~~~aitfvt~~~e~~~l~~Ie~~ 1198 (1858)
|||||.|++||+||+|.+.++||||+ |+ +|.++.+++|.++..++..|++.
T Consensus 378 GLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 378 GLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred cCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999 33 34899999996667888877764
No 14
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.4e-38 Score=375.43 Aligned_cols=332 Identities=27% Similarity=0.415 Sum_probs=268.7
Q ss_pred cCCEEEEEecCCcEEEEccc---ccCCCCCCCC-CCceeecCc-cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 227 GQFCTFLLDSTGGLLVYGKG---WLGLANTTIQ-PLPKRVPLE-AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~-~~P~~V~~~-~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
-..|...++.-+.||+||+| ++|+++.... ..|...++. .....|..++||+.|+++|++||+||+||.|..|+|
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L 136 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL 136 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence 34566688888999999997 9998876655 778887766 244677789999999999999999999999999999
Q ss_pred CCCCC----------------cccccceeeec---CCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCcc
Q psy15269 302 GHGNT----------------LSQRRPKLIMG---GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSR 362 (1858)
Q Consensus 302 G~g~~----------------~~~~~P~~V~~---~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~ 362 (1858)
|.... ....+|..+.. .....+|++++||++++++++++|+||+||.+..+.++.+...+.
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 98761 12457888875 223458999999999999999999999999998888888844332
Q ss_pred ------ccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeeccc-ccEEEEEecCc
Q psy15269 363 ------HTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK-FRVRKVCAGTS 435 (1858)
Q Consensus 363 ------~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~-~~Iv~IaaG~~ 435 (1858)
.+|..+. ...|+++++|.+|.++|+++|+ ||+||+|..||||.........+..+..+.. ..|.+|+||.+
T Consensus 217 ~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~-vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~ 294 (476)
T COG5184 217 QKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGK-VYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKD 294 (476)
T ss_pred ccceeeeeeeecC-chheeeeccCCceEEEEecCCc-EEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcc
Confidence 3455544 3569999999999999999995 9999999999999998887766666654332 34789999999
Q ss_pred eEEEEecCCcEEEEe------CCCCCC---CccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCC
Q psy15269 436 FSVALTWDGLVFWWG------LGLRSS---SISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ 506 (1858)
Q Consensus 436 hSlALT~dG~Vy~WG------LG~gss---~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~ 506 (1858)
|++||+++|++|+|| +|.++. ......|.....+.+..|..|++|..|+++|..+|.+|+||+++.||||.
T Consensus 295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~ 374 (476)
T COG5184 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGI 374 (476)
T ss_pred eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccC
Confidence 999999999999999 444411 12345566666667778999999999999999999999999999999999
Q ss_pred CCCCC-CcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 507 DNFSN-PVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 507 G~~~~-~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
.+..+ .++.|.++... .++.+++||..|+++.+ .+|.||+||.+.++++|....
T Consensus 375 ~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t---~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 375 QEEITIDVSTPTKLSVA--IKLEQVACGTHHNIART---DDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred cccceeecCCccccccc--cceEEEEecCccceeec---cCCceEEecCchhhhccCCch
Confidence 87432 23344444332 35899999999999998 789999999999999997655
No 15
>KOG0345|consensus
Probab=100.00 E-value=1.5e-38 Score=373.05 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=254.9
Q ss_pred cHHHHHHHHHHHHhhhc-cccccccccccCccceechHhHHHHHHHHHHhCCcCCC-CCCCccchhhhcccccccccccc
Q psy15269 840 TLRYFLAILPLLDSLNQ-LLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLG-PPEAHEETETVHWLKTSLLSAGL 917 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~-~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~-~pl~~~e~~~~~wL~s~~~~GG~ 917 (1858)
.|-+++|+|+.+-+.+- ..|. ..-..||.|+|+||.||-..+..++.. ++ |+..++.||.
T Consensus 57 TlAFllP~le~i~rr~~~~~~~-------~vgalIIsPTRELa~QI~~V~~~F~~~l~~-----------l~~~l~vGG~ 118 (567)
T KOG0345|consen 57 TLAFLLPMLEIIYRREAKTPPG-------QVGALIISPTRELARQIREVAQPFLEHLPN-----------LNCELLVGGR 118 (567)
T ss_pred hhhHHHHHHHHHHhhccCCCcc-------ceeEEEecCcHHHHHHHHHHHHHHHHhhhc-----------cceEEEecCc
Confidence 57799999999955554 4422 122389999999999998888877777 33 4678999998
Q ss_pred CCchhhhhhhh-hccccccccccccc--Cccccccc--cccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH
Q psy15269 918 EPSTAIIDIDK-FVRDMRHVSNNILM--SPNYESDV--NKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV 992 (1858)
Q Consensus 918 ~~~~q~~dl~~-~v~~l~~t~~~ll~--~~~~~~~~--~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~ 992 (1858)
.+..++.-+.. +..++++|||||+| ..+.+... ...-+||||||| |++|||+.+ ++.|++.
T Consensus 119 ~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADr----------LldmgFe~~----~n~ILs~ 184 (567)
T KOG0345|consen 119 SVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADR----------LLDMGFEAS----VNTILSF 184 (567)
T ss_pred cHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHh----------HhcccHHHH----HHHHHHh
Confidence 88888877775 88899999999997 44344333 566677999999 999999999 9999999
Q ss_pred hHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--c--cEEEEEEECC
Q psy15269 993 VNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--H--LVKQYLIRTP 1068 (1858)
Q Consensus 993 Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~--~I~Q~~~~v~ 1068 (1858)
|||.|.|-|| |||+.+++.+|++..|+||+.|.|+.+.. + .+.-+|+.|+
T Consensus 185 LPKQRRTGLF--------------------------SATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 185 LPKQRRTGLF--------------------------SATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred cccccccccc--------------------------cchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9999999999 99999999999999999999999976654 2 3889999999
Q ss_pred hhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1069 KSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
..+|+..|+++|.. .|+|||..|+..+++....|.. ...++.++||+|+ |.+|.++++.|++..-.+|+|||
T Consensus 239 a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~---q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMS---QKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred HHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhc---chhHHHHHHHHHhccCceEEeeh
Confidence 99999999999987 8999999999999999999987 4778999999999 99999999999998999999999
Q ss_pred ccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHH
Q psy15269 1144 SDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~I 1195 (1858)
|||||||||+|++||+||+|.++..|+||+ ++.|.||.|+.| .|..++..+
T Consensus 316 VaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p-~E~aYveFl 372 (567)
T KOG0345|consen 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP-REEAYVEFL 372 (567)
T ss_pred hhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc-cHHHHHHHH
Confidence 999999999999999999999999999999 334499999999 776665543
No 16
>KOG0326|consensus
Probab=100.00 E-value=1.2e-38 Score=358.07 Aligned_cols=302 Identities=17% Similarity=0.155 Sum_probs=269.5
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
+++|+|+-+|--+. .....++=|+|+||+|+.+.+.-|..++.+ +..+..||..+.-+
T Consensus 139 ~~IP~Lekid~~~~-----------~IQ~~ilVPtrelALQtSqvc~~lskh~~i-----------~vmvttGGT~lrDD 196 (459)
T KOG0326|consen 139 YCIPVLEKIDPKKN-----------VIQAIILVPTRELALQTSQVCKELSKHLGI-----------KVMVTTGGTSLRDD 196 (459)
T ss_pred eechhhhhcCcccc-----------ceeEEEEeecchhhHHHHHHHHHHhcccCe-----------EEEEecCCcccccc
Confidence 67787777664433 334578899999999999999999998887 44667999999999
Q ss_pred hhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAEL 1000 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtL 1000 (1858)
+..+...|..+++||+|.+| .++....+...-+|+||||+ |+...|++- ++.++..+|+.||-|
T Consensus 197 I~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK----------lLs~~F~~~----~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 197 IMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK----------LLSVDFQPI----VEKLISFLPKERQIL 262 (459)
T ss_pred eeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh----------hhchhhhhH----HHHHHHhCCccceee
Confidence 99999999999999999997 77777777778888999988 999999999 999999999999999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC-CcccEEEEEEECChhhHHHHHHHh
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS-SVHLVKQYLIRTPKSQKIVNLLSF 1079 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~-~~~~I~Q~~~~v~~~~Kl~~Ll~l 1079 (1858)
|| |||+|-.|..+..++|++|..|.+-.+ +...+.|+|.++.+++|+..|-.+
T Consensus 263 ly--------------------------SATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntL 316 (459)
T KOG0326|consen 263 LY--------------------------SATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTL 316 (459)
T ss_pred EE--------------------------ecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHH
Confidence 99 999999999999999999999977533 334599999999999996655544
Q ss_pred ---hcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcce
Q psy15269 1080 ---LEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQ 1156 (1858)
Q Consensus 1080 ---L~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~ 1156 (1858)
|.-.+.|||||+.++++.||..+.+.|+++..+|.+|. |+.|.+++.+||+|.++.|||||+.-|||||+.|+.
T Consensus 317 fskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~---Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNv 393 (459)
T KOG0326|consen 317 FSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMA---QEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNV 393 (459)
T ss_pred HHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHH---HhhhhhhhhhhhccccceeeehhhhhcccccceeeE
Confidence 44589999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhhhccC------cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCc
Q psy15269 1157 VIIYNLPLSINHYVFQIAG------HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1157 VINyDlP~~~e~YIHRIag------~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~ 1210 (1858)
|||||+|.++|+|+||||+ -|.||++++- +|+..+.+||+.++.+++++|...
T Consensus 394 VINFDfpk~aEtYLHRIGRsGRFGhlGlAInLity-edrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 394 VINFDFPKNAETYLHRIGRSGRFGHLGLAINLITY-EDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EEecCCCCCHHHHHHHccCCccCCCcceEEEEEeh-hhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999933 2389999998 999999999999999999999643
No 17
>KOG0339|consensus
Probab=100.00 E-value=2.6e-37 Score=362.77 Aligned_cols=305 Identities=17% Similarity=0.176 Sum_probs=272.4
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
++.|.+.++-+...|.|..| ....++-|+|+||.||=..+..+..+-.+ +...++||..+..|
T Consensus 277 fi~pm~~himdq~eL~~g~g------Pi~vilvPTrela~Qi~~eaKkf~K~ygl-----------~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 277 FIWPMIVHIMDQPELKPGEG------PIGVILVPTRELASQIFSEAKKFGKAYGL-----------RVVAVYGGGSKWEQ 339 (731)
T ss_pred HHHHHHHHhcchhhhcCCCC------CeEEEEeccHHHHHHHHHHHHHhhhhccc-----------eEEEeecCCcHHHH
Confidence 56677777777777774333 34589999999999998888777666555 55889999999999
Q ss_pred hhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAEL 1000 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtL 1000 (1858)
+..|+.+.+++++||+|+|| .....+...+.++|+||+|| |++|||.++ ++.|-..+...||||
T Consensus 340 ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr----------mfdmGfe~q----VrSI~~hirpdrQtl 405 (731)
T KOG0339|consen 340 SKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR----------MFDMGFEPQ----VRSIKQHIRPDRQTL 405 (731)
T ss_pred HHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhh----------hhccccHHH----HHHHHhhcCCcceEE
Confidence 99999999999999999997 77788889999999999999 999999999 999999999999999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHH
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLL 1077 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll 1077 (1858)
|| |||++..|+++|+.+|.||++|...... ...|.|.+..|+. ..|+..|+
T Consensus 406 lF--------------------------saTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 406 LF--------------------------SATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred Ee--------------------------eccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHH
Confidence 99 9999999999999999999998766443 3449999988864 56777776
Q ss_pred Hhhc----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1078 SFLE----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1078 ~lL~----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
+-|. .+++|||+..+..++.++..|+..|+++..+||+|. |.+|.++|.+||++...||||||||+||+||++
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkd---qa~rn~~ls~fKkk~~~VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKD---QAERNEVLSKFKKKRKPVLVATDVAARGLDIPS 536 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchh---hHHHHHHHHHHhhcCCceEEEeeHhhcCCCccc
Confidence 6554 379999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+..|||||+-.+++.|+||| +| +|+++|++++ .|..+...|.+.|....|.+|+
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTe-KDa~fAG~LVnnLe~agQnVP~ 596 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTE-KDAEFAGHLVNNLEGAGQNVPD 596 (731)
T ss_pred cceeecccccchhHHHHHHhhhcccccccceeeEEech-hhHHHhhHHHHHHhhccccCCh
Confidence 99999999999999999999 33 3399999999 8999999999999999999997
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-35 Score=378.29 Aligned_cols=305 Identities=21% Similarity=0.273 Sum_probs=260.8
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
+++|+|.++.....+. .++...+++|.|+|+||.||-..+..+.....+ +..+.+||.....|
T Consensus 184 ylLP~l~~i~~~~~~~------~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i-----------~~~~~~gg~~~~~q 246 (545)
T PTZ00110 184 FLLPAIVHINAQPLLR------YGDGPIVLVLAPTRELAEQIREQCNKFGASSKI-----------RNTVAYGGVPKRGQ 246 (545)
T ss_pred HHHHHHHHHHhccccc------CCCCcEEEEECChHHHHHHHHHHHHHHhcccCc-----------cEEEEeCCCCHHHH
Confidence 4566666665433222 123345799999999999999988887665544 55778999999999
Q ss_pred hhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAEL 1000 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtL 1000 (1858)
...+.++++++++||+++++ ..+..+......+|+||||+ |+++||.++ ++.|+..++..||++
T Consensus 247 ~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~----------mld~gf~~~----i~~il~~~~~~~q~l 312 (545)
T PTZ00110 247 IYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR----------MLDMGFEPQ----IRKIVSQIRPDRQTL 312 (545)
T ss_pred HHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh----------hhhcchHHH----HHHHHHhCCCCCeEE
Confidence 99999999999999999986 33445555667777888877 999999999 999999999999999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcC-CCEEEEEccCC---cccEEEEEEECChhhHHHHH
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVE-DPIMKLVKPSS---VHLVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~-dpv~I~v~~~~---~~~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+| |||+|++++++++.++. +|+.+.+.... ..+++|.++.++..+|...|
T Consensus 313 ~~--------------------------SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L 366 (545)
T PTZ00110 313 MW--------------------------SATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKL 366 (545)
T ss_pred EE--------------------------EeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHH
Confidence 99 99999999999999986 69988876433 34588998888877787777
Q ss_pred HHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1077 LSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1077 l~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
..++. ..++||||+|++.|+.+++.|+..|+++..+||+|+ |.+|.+++++|++|+++||||||+++|||||
T Consensus 367 ~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~---~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 367 KMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKK---QEERTWVLNEFKTGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCc---HHHHHHHHHHHhcCCCcEEEEcchhhcCCCc
Confidence 76664 369999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
++|++|||||+|.++++|+||+ +| ++.+++|+++ ++...++.|.+.++...+++|+
T Consensus 444 ~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~-~~~~~~~~l~~~l~~~~q~vp~ 505 (545)
T PTZ00110 444 KDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQPVPP 505 (545)
T ss_pred ccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECc-chHHHHHHHHHHHHHccCCCCH
Confidence 9999999999999999999999 22 2389999998 8899999999999999999997
No 19
>KOG1427|consensus
Probab=100.00 E-value=1.6e-34 Score=321.82 Aligned_cols=350 Identities=22% Similarity=0.352 Sum_probs=283.4
Q ss_pred eCCeEEEEcCCCCCCCCcCCC---CCcccccccCCCC--CeEEEEEc--CCEEEEEecCCcEEEEccc---ccCCCCCCC
Q psy15269 186 AHSKVYTWGCNLHHQILDEVR---GKCSRPRLQSLPS--NIRHIEAG--QFCTFLLDSTGGLLVYGKG---WLGLANTTI 255 (1858)
Q Consensus 186 s~g~Vy~WGsN~~GQLG~g~~---~~~~~P~~v~~~~--~IkqVA~G--~~hTlaLt~dG~VyawG~N---qLGlg~~~~ 255 (1858)
..|+++..|.-...+.|.... .+...|.+..... +|+-|+.| ..|+++|+-+|+.|.||.| |||.++...
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~ 97 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ 97 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhh
Confidence 447788888777666664432 2345566554333 47777766 4899999999999999987 999998888
Q ss_pred CCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc-cccceeeecCCCCCcEEEEEecCceE
Q psy15269 256 QPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS-QRRPKLIMGGLYGKRVTQVSAGHSHS 334 (1858)
Q Consensus 256 ~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~-~~~P~~V~~~l~~~~IvqVa~G~~HS 334 (1858)
...|+.|+..... +|.+.+||++|+++||++|+||+||.|.+||||.++..+ ...|..+. ..+..|+.|+||..++
T Consensus 98 ~e~Ptvi~gL~~~-~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~--~~~~~v~~v~cga~ft 174 (443)
T KOG1427|consen 98 RERPTVISGLSKH-KIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC--VVSDEVTNVACGADFT 174 (443)
T ss_pred ccCCchhhhhhhh-hHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc--ccCccceeeccccceE
Confidence 8888888765444 345578999999999999999999999999999998754 33333332 3456799999999999
Q ss_pred EEEEeCCeEEEEecCCCCCCCCCCCCc--------------cccccccccCCC--ceEEeecCceEEEEEcCCCEEEEEe
Q psy15269 335 AAVTEDGLLYTWGEGDHGRLGHGDLKS--------------RHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMG 398 (1858)
Q Consensus 335 ~aLT~dG~VYtWG~N~~GQLG~G~~~~--------------~~~P~~V~~l~~--I~~IAcG~~HTlaLt~dG~tVysWG 398 (1858)
+.|+..+.+.++|.-.|||||+++... +..|..|..+.+ |++++||.+||++++++++ ||+||
T Consensus 175 v~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkr-VysWG 253 (443)
T KOG1427|consen 175 VWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKR-VYSWG 253 (443)
T ss_pred EEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCcc-EEEec
Confidence 999999999999999999999985432 234555666655 7899999999999999996 99999
Q ss_pred CCCCCCCCCCCCCceeccEEeeecc--cccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEE
Q psy15269 399 SGNLGKLGHEDTGKVTTPKVIEALR--KFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVD 476 (1858)
Q Consensus 399 ~N~~GQLG~g~~~~~~~P~~V~~l~--~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~ 476 (1858)
.+.||.||+....+...|+.++.+. +.--.++.||+.+++++.+-|.+|.||.-.. +.....+|+.+..+.+-++..
T Consensus 254 FGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-~ge~~mypkP~~dlsgwnl~~ 332 (443)
T KOG1427|consen 254 FGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-NGEDWMYPKPMMDLSGWNLRW 332 (443)
T ss_pred cccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-CcccccCCCchhhcCCccCCC
Confidence 9999999999999999999887653 3345689999999999999999999993221 223456899999999999999
Q ss_pred EEEcCceEEEEEeCCeEEEEeCCCCCCC-CCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 477 VSIGDSHVLALSQYNEVYAWGSNTMGQC-GQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 477 Ia~G~~HtlALt~dG~VYaWG~N~~GQL-G~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
+.||..|.++- .|....+||...+|.+ |.+........|.+++.+.+..|.+|++|..||+++.
T Consensus 333 ~~~~~~h~~v~-ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~viv 397 (443)
T KOG1427|consen 333 MDSGSMHHFVG-ADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIV 397 (443)
T ss_pred cCccceeeeec-ccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEE
Confidence 99999998765 5678999999988874 5555555667899999999999999999999999997
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.1e-34 Score=367.63 Aligned_cols=350 Identities=16% Similarity=0.152 Sum_probs=279.1
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+++.++.-. ....+.++-|+|+||.|+...+..+....+- ++...++||..+.
T Consensus 58 ~af~lpll~~l~~~~-----------~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~----------i~v~~~~gG~~~~ 116 (629)
T PRK11634 58 AAFSLPLLHNLDPEL-----------KAPQILVLAPTRELAVQVAEAMTDFSKHMRG----------VNVVALYGGQRYD 116 (629)
T ss_pred HHHHHHHHHHhhhcc-----------CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC----------ceEEEEECCcCHH
Confidence 347788887775321 1234689999999999998887766543321 2345678999888
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.|...+.+++++++.||+++++ ............+|+|||++ |++|||..+ ++.|++.+|+.+|
T Consensus 117 ~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~----------ml~~gf~~d----i~~Il~~lp~~~q 182 (629)
T PRK11634 117 VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE----------MLRMGFIED----VETIMAQIPEGHQ 182 (629)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH----------HhhcccHHH----HHHHHHhCCCCCe
Confidence 8888888899999999999997 33344455667788888887 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+++| |||+|+.+.++++.|+++|..|.+..... ..+.|.|+.+...+|...|
T Consensus 183 ~llf--------------------------SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 183 TALF--------------------------SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred EEEE--------------------------EccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 9999 99999999999999999999988765443 3488999999888898888
Q ss_pred HHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1077 LSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1077 l~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
.+++.. .++||||+|+..++.+++.|.+.|+.+..+||+|+ |.+|.+++++|++|+++||||||+++||||+|+
T Consensus 237 ~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~---q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~ 313 (629)
T PRK11634 237 VRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMN---QALREQTLERLKDGRLDILIATDVAARGLDVER 313 (629)
T ss_pred HHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCC---HHHHHHHHHHHhCCCCCEEEEcchHhcCCCccc
Confidence 888764 68999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cCc-ceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcccc--Cchh--------
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AGH-KEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHAN--GNTL-------- 1217 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~~--~~~~-------- 1217 (1858)
|++|||||+|.++++|+||+ +|+ +.|++|+++ .|..+++.|++.++....+++....+. ....
T Consensus 314 V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~-~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~ 392 (629)
T PRK11634 314 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ 392 (629)
T ss_pred CCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEech-HHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 333 389999998 888999999999988776543211110 0001
Q ss_pred hHhhhhcHHHHHHHHHhhhh-----hhchHHHHHHHHHHHHHH
Q psy15269 1218 LREVSSNMIHILAIACANHI-----EDLNESVRSKLTSCLHVY 1255 (1858)
Q Consensus 1218 ~kia~~rl~~il~~aa~~~e-----d~l~~~v~~all~ll~~q 1255 (1858)
..+....+..+..++..+.+ +....+++++++.+....
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~ 435 (629)
T PRK11634 393 QQLESSDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGE 435 (629)
T ss_pred HHhhhhhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCC
Confidence 11112223344444444443 356777788888777653
No 21
>KOG0348|consensus
Probab=100.00 E-value=1.2e-33 Score=334.53 Aligned_cols=303 Identities=17% Similarity=0.246 Sum_probs=253.5
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+|+|++++|-+.--.+ .+ -++.++++|-||||||+||=..+..++. +-+|+-...+.||-..
T Consensus 188 TLAYllPiVq~Lq~m~~ki---~R--s~G~~ALVivPTREL~~Q~y~~~qKLl~----------~~hWIVPg~lmGGEkk 252 (708)
T KOG0348|consen 188 TLAYLLPIVQSLQAMEPKI---QR--SDGPYALVIVPTRELALQIYETVQKLLK----------PFHWIVPGVLMGGEKK 252 (708)
T ss_pred cHHHHHHHHHHHHhcCccc---cc--cCCceEEEEechHHHHHHHHHHHHHHhc----------CceEEeeceeeccccc
Confidence 6789999999987765444 11 2566789999999999999877776653 4689999999999999
Q ss_pred chhhhhhhhhcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh---
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV--- 993 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L--- 993 (1858)
..+.-.|+||+.++|.|||||+|+.. ....+..-.+||||+|| ++++||.++ |.+|++.+
T Consensus 253 KSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDr----------lleLGfekd----it~Il~~v~~~ 318 (708)
T KOG0348|consen 253 KSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADR----------LLELGFEKD----ITQILKAVHSI 318 (708)
T ss_pred ccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhH----------HHhccchhh----HHHHHHHHhhc
Confidence 99999999999999999999998443 33333445566666666 999999999 88888887
Q ss_pred ----------HHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEcc---------
Q psy15269 994 ----------NKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKP--------- 1054 (1858)
Q Consensus 994 ----------pk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~--------- 1054 (1858)
|..+|++|- |||+.+.|.+||..-|+||++|..+.
T Consensus 319 ~~~e~~~~~lp~q~q~mLl--------------------------SATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 319 QNAECKDPKLPHQLQNMLL--------------------------SATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred cchhcccccccHHHHhHhh--------------------------hhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 336899998 99999999999999999999998321
Q ss_pred ------------------CCcccEEEEEEECChhhHHHHHHHhhcC-------CcEEEEecChHHHHHHHHHHhhC----
Q psy15269 1055 ------------------SSVHLVKQYLIRTPKSQKIVNLLSFLEG-------KRSLIFVKTYRDASRIISAVQDS---- 1105 (1858)
Q Consensus 1055 ------------------~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~-------~k~IIFvnTk~~ad~L~~~L~~~---- 1105 (1858)
...+.+.|.|..||..-++..|..+|.. .|+|||+.|++.|++-+..|.+.
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 0112368999999999999888887753 68999999999999999988742
Q ss_pred ------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChh
Q psy15269 1106 ------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSIN 1167 (1858)
Q Consensus 1106 ------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e 1167 (1858)
+.++..|||+|+ |++|..++..|+..+-.||.||||||||||+|+|.+||+||.|.+++
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~---QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSME---QEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchh---HHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 345888999998 99999999999998888999999999999999999999999999999
Q ss_pred hhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhh
Q psy15269 1168 HYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1168 ~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~ 1201 (1858)
+|+||| |.+|.|+.|+.| .|..+++.|++....
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P-~Eaey~~~l~~~~~~ 568 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLP-SEAEYVNYLKKHHIM 568 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecc-cHHHHHHHHHhhcch
Confidence 999999 334499999999 777788888776554
No 22
>KOG0327|consensus
Probab=100.00 E-value=3.7e-34 Score=332.37 Aligned_cols=290 Identities=18% Similarity=0.198 Sum_probs=258.2
Q ss_pred cccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh-hcccccccccccccC
Q psy15269 865 TETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK-FVRDMRHVSNNILMS 943 (1858)
Q Consensus 865 ~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~~ 943 (1858)
+++...+.++.|+|+||.|+-.....+...+.. +.....||.....+...+.+ ...+++.||+++++-
T Consensus 91 ~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~-----------~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dm 159 (397)
T KOG0327|consen 91 SVKETQALILAPTRELAQQIQKVVRALGDHMDV-----------SVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDM 159 (397)
T ss_pred chHHHHHHHhcchHHHHHHHHHHHHhhhcccce-----------eeeeecCcccchhhhhhhhccCceeecCCchhHHHh
Confidence 356667899999999999998766666555555 33556889888878777777 567899999999984
Q ss_pred cccccccc--ccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccc
Q psy15269 944 PNYESDVN--KYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTS 1021 (1858)
Q Consensus 944 ~~~~~~~~--~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~ 1021 (1858)
-++..+.. ..-+++|+||+ |+..||.++ +.+|++.+|..-|.++|
T Consensus 160 l~~~~l~~~~iKmfvlDEaDE----------mLs~gfkdq----I~~if~~lp~~vQv~l~------------------- 206 (397)
T KOG0327|consen 160 LNRGSLSTDGIKMFVLDEADE----------MLSRGFKDQ----IYDIFQELPSDVQVVLL------------------- 206 (397)
T ss_pred hccccccccceeEEeecchHh----------hhccchHHH----HHHHHHHcCcchhheee-------------------
Confidence 44444333 45667888888 999999999 99999999999999999
Q ss_pred cccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECChhhHHHHHHHhhcC-CcEEEEecChHHHHHH
Q psy15269 1022 TQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPKSQKIVNLLSFLEG-KRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1022 ~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L 1098 (1858)
|||+|.++.+++++||++|+.|.++..+.+. ++|+|+.+.+.+|+..|+++.+. .+.+|||||++.++.+
T Consensus 207 -------SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l 279 (397)
T KOG0327|consen 207 -------SATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNL 279 (397)
T ss_pred -------cccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHH
Confidence 9999999999999999999999998776664 99999999999999999998886 8899999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI----- 1173 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI----- 1173 (1858)
...|...++.++++||+|. |.+|..+++.||+|..+|||.||+.|||||+.++++|||||+|.+.++|+||+
T Consensus 280 ~~~L~~~~~~~s~~~~d~~---q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr 356 (397)
T KOG0327|consen 280 TDKLRAHGFTVSAIHGDME---QNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGR 356 (397)
T ss_pred HHHHhhCCceEEEeecccc---hhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccc
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred -cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1174 -AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1174 -ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
++++.+++|++. .|.+.+++++++++..+.++|..
T Consensus 357 ~grkg~~in~v~~-~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 357 FGRKGVAINFVTE-EDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred cCCCceeeeeehH-hhHHHHHhHHHhcCCcceecccc
Confidence 555599999998 89999999999999999998863
No 23
>KOG0334|consensus
Probab=100.00 E-value=9.6e-34 Score=359.82 Aligned_cols=313 Identities=19% Similarity=0.249 Sum_probs=270.0
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+++|.+.|.+....+- + +++.-..|+.|+|+||.||.+.+..+.+..-+.. .+++||..+
T Consensus 416 T~af~LPmirhi~dQr~~~--~----gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~-----------v~vygg~~~ 478 (997)
T KOG0334|consen 416 TLAFLLPMIRHIKDQRPLE--E----GDGPIALILAPTRELAMQIHREVRKFLKLLGIRV-----------VCVYGGSGI 478 (997)
T ss_pred chhhhcchhhhhhcCCChh--h----CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE-----------EEecCCccH
Confidence 4667788886666555444 1 2455569999999999999999999998866644 567999999
Q ss_pred chhhhhhhhhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAE 999 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQt 999 (1858)
..|+-++.++.++++-||++.+|-.-..+ .-|+-.-+..|.++++||+|++|||.|+ +..|++.++..|||
T Consensus 479 ~~qiaelkRg~eIvV~tpGRmiD~l~~n~-----grvtnlrR~t~lv~deaDrmfdmgfePq----~~~Ii~nlrpdrQt 549 (997)
T KOG0334|consen 479 SQQIAELKRGAEIVVCTPGRMIDILCANS-----GRVTNLRRVTYLVLDEADRMFDMGFEPQ----ITRILQNLRPDRQT 549 (997)
T ss_pred HHHHHHHhcCCceEEeccchhhhhHhhcC-----CccccccccceeeechhhhhheeccCcc----cchHHhhcchhhhh
Confidence 99999999999999999999998332211 1222222335555556666999999999 77799999999999
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECC-hhhHHHHH
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTP-KSQKIVNL 1076 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~-~~~Kl~~L 1076 (1858)
.+| |||+|..++.+|++.|+.|+.|.+...+... +.|.+..|+ +.+|+..|
T Consensus 550 vlf--------------------------Satfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 550 VLF--------------------------SATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhh--------------------------hhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 999 9999999999999999999999998666554 899999998 89999999
Q ss_pred HHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC
Q psy15269 1077 LSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1077 l~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp 1152 (1858)
+.+|.. .++||||..+..|+.+.+.|.+.|+.+..|||+.+ |.+|..++++||++.+++||||+++|||||+.
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~---q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVD---QHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCc---hHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 998864 89999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
++.+|||||+|...++|+||+ +|++ .|++|++| ++..+..+|.+.+....+.+|.
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P~ 741 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVPK 741 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCch
Confidence 999999999999999999999 3433 89999999 9999999999999888888885
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.3e-33 Score=350.16 Aligned_cols=300 Identities=17% Similarity=0.175 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+++.|+.-. ....++++-|+|+||.|+...+..+....+- ++...+.||..++
T Consensus 56 ~a~~lpil~~l~~~~-----------~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~----------~~v~~~~Gg~~~~ 114 (460)
T PRK11776 56 AAFGLGLLQKLDVKR-----------FRVQALVLCPTRELADQVAKEIRRLARFIPN----------IKVLTLCGGVPMG 114 (460)
T ss_pred HHHHHHHHHHhhhcc-----------CCceEEEEeCCHHHHHHHHHHHHHHHhhCCC----------cEEEEEECCCChH
Confidence 346777877774211 1123588999999999999988777654421 2456689999999
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.|...+.+.+++++.||+++++ ..+.........+|+|||++ |.++||.++ ++.|++.+|+.||
T Consensus 115 ~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~----------~l~~g~~~~----l~~i~~~~~~~~q 180 (460)
T PRK11776 115 PQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR----------MLDMGFQDA----IDAIIRQAPARRQ 180 (460)
T ss_pred HHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH----------HhCcCcHHH----HHHHHHhCCcccE
Confidence 9999999999999999999997 33334455566778888877 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc-ccEEEEEEECChhhHHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV-HLVKQYLIRTPKSQKIVNLL 1077 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~-~~I~Q~~~~v~~~~Kl~~Ll 1077 (1858)
+++| |||+|+.++++++.++++|..+.+..... ..++|+++.++..+|...|.
T Consensus 181 ~ll~--------------------------SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 181 TLLF--------------------------SATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred EEEE--------------------------EecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHH
Confidence 9999 99999999999999999999998865443 34999999999888999888
Q ss_pred HhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1078 SFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1078 ~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
+++.. .++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|..++++|++|+.+||||||+++||||+|+|
T Consensus 235 ~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~---~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v 311 (460)
T PRK11776 235 RLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLE---QRDRDQVLVRFANRSCSVLVATDVAARGLDIKAL 311 (460)
T ss_pred HHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCcEEEEecccccccchhcC
Confidence 88864 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred ceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1155 EQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1155 ~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|||||+|.+++.|+||+ +| .+.+++|+++ +|...++.|++.++.....
T Consensus 312 ~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~-~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 312 EAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAP-EEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEch-hHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999 22 2389999998 8888999999998876553
No 25
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4e-33 Score=345.91 Aligned_cols=306 Identities=17% Similarity=0.149 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..|.+..... +.- .....+++|-|+|+||.|+-..+..+.....+ +..++.||....
T Consensus 60 la~llp~l~~l~~~~~~~---~~~-~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~-----------~v~~~~gg~~~~ 124 (423)
T PRK04837 60 MAFLTATFHYLLSHPAPE---DRK-VNQPRALIMAPTRELAVQIHADAEPLAQATGL-----------KLGLAYGGDGYD 124 (423)
T ss_pred HHHHHHHHHHHHhccccc---ccc-cCCceEEEECCcHHHHHHHHHHHHHHhccCCc-----------eEEEEECCCCHH
Confidence 346778887776532211 000 12345799999999999998887777666554 346678998888
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH--H
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK--F 996 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk--~ 996 (1858)
.+...+++.+++++.||+++++ .....+......+|+||||+ |.++||..+ ++.|++.++. .
T Consensus 125 ~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~----------l~~~~f~~~----i~~i~~~~~~~~~ 190 (423)
T PRK04837 125 KQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR----------MFDLGFIKD----IRWLFRRMPPANQ 190 (423)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH----------HhhcccHHH----HHHHHHhCCCccc
Confidence 8888888889999999999986 34445556677788888887 899999999 9999999984 5
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIV 1074 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~ 1074 (1858)
|++++| |||++..+.+++..++.+|..+.+..... ..+++.++.....+|..
T Consensus 191 ~~~~l~--------------------------SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 191 RLNMLF--------------------------SATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred eeEEEE--------------------------eccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 667888 99999999999999999999998865443 34888888888888988
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.|..++.. .++||||+|++.|+.+++.|.+.|+++..+||+|+ +++|..++++|++|+++||||||+++|||||
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~---~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVA---QKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCC---hhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 88888764 78999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
|+|++|||||+|.++++|+||+ +| .|.+|+|+++ +|...+..|+++++.....
T Consensus 322 p~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~-~~~~~~~~i~~~~~~~~~~ 380 (423)
T PRK04837 322 PAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE-EYALNLPAIETYIGHSIPV 380 (423)
T ss_pred cccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCH-HHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999 22 3389999998 8888899999988776543
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6e-33 Score=351.95 Aligned_cols=311 Identities=21% Similarity=0.266 Sum_probs=262.5
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|.++..+....+- ......+.++-|+|+||.|+-..+..+.++.++ +..+++||..+.
T Consensus 173 layllPil~~l~~~~~~~~~----~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~-----------~~~~~~gG~~~~ 237 (518)
T PLN00206 173 ASFLVPIISRCCTIRSGHPS----EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPF-----------KTALVVGGDAMP 237 (518)
T ss_pred HHHHHHHHHHHHhhcccccc----ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCc-----------eEEEEECCcchH
Confidence 44778888877655432210 013345799999999999998888877777665 457789999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.|...+.++++++++||+++++ .+..........+|+||||+ |.++||.++ +.+|+..++ .+|
T Consensus 238 ~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~----------ml~~gf~~~----i~~i~~~l~-~~q 302 (518)
T PLN00206 238 QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC----------MLERGFRDQ----VMQIFQALS-QPQ 302 (518)
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH----------HhhcchHHH----HHHHHHhCC-CCc
Confidence 8888888899999999999986 34444555666777888877 999999999 999998886 578
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECChhhHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+++| |||+|++++++++.++++|+.|.+...... .++|.++.++..+|...|
T Consensus 303 ~l~~--------------------------SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l 356 (518)
T PLN00206 303 VLLF--------------------------SATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKL 356 (518)
T ss_pred EEEE--------------------------EeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHH
Confidence 8888 999999999999999999999988755433 388988888888888888
Q ss_pred HHhhcC-----CcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCC
Q psy15269 1077 LSFLEG-----KRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGND 1150 (1858)
Q Consensus 1077 l~lL~~-----~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLD 1150 (1858)
+.++.. .++||||+|+..++.+++.|.. .|+.+..+||+|+ |.+|..++++|++|+++||||||+++||||
T Consensus 357 ~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~---~~eR~~il~~Fr~G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 357 FDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKS---MKERREVMKSFLVGEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCC---HHHHHHHHHHHHCCCCCEEEEecHhhccCC
Confidence 887753 5799999999999999999985 6999999999999 999999999999999999999999999999
Q ss_pred CCCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1151 FTNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1151 Ip~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
+|+|++|||||+|.++++|+||+| | .|.+++|+++ ++...+.++.+.++...+.+|+++.
T Consensus 434 ip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~-~~~~~~~~l~~~l~~~~~~vp~~l~ 499 (518)
T PLN00206 434 LLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNE-EDRNLFPELVALLKSSGAAIPRELA 499 (518)
T ss_pred cccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEch-hHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999999999999992 2 2389999998 8889999999999999999997443
No 27
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-32 Score=344.57 Aligned_cols=304 Identities=17% Similarity=0.187 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|+.|..-+... .+ .....+++|.|+|+||.|+...+..+....++ +...++||....
T Consensus 53 la~~lpil~~l~~~~~~~--~~---~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~-----------~~~~~~gg~~~~ 116 (456)
T PRK10590 53 AGFTLPLLQHLITRQPHA--KG---RRPVRALILTPTRELAAQIGENVRDYSKYLNI-----------RSLVVFGGVSIN 116 (456)
T ss_pred HHHHHHHHHHhhhccccc--cc---CCCceEEEEeCcHHHHHHHHHHHHHHhccCCC-----------EEEEEECCcCHH
Confidence 447778887775432211 01 12234689999999999999998877655443 567789999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+....+++++||.++++ ............+|+|||++ |.++||..+ ++.|+..+++.+|
T Consensus 117 ~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~----------ll~~~~~~~----i~~il~~l~~~~q 182 (456)
T PRK10590 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR----------MLDMGFIHD----IRRVLAKLPAKRQ 182 (456)
T ss_pred HHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH----------HhccccHHH----HHHHHHhCCccCe
Confidence 8888888888999999999986 34444556667777888877 899999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+++| |||++.++.+++..++.+|..+.+.... ...+.|.+..++..+|...|
T Consensus 183 ~l~~--------------------------SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 236 (456)
T PRK10590 183 NLLF--------------------------SATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELL 236 (456)
T ss_pred EEEE--------------------------eCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHH
Confidence 9999 9999999999999999999988775433 34488999899988888888
Q ss_pred HHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1077 LSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1077 l~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
..++.. .++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|.+++++|++|+++||||||+++||||||+
T Consensus 237 ~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~---~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~ 313 (456)
T PRK10590 237 SQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKS---QGARTRALADFKSGDIRVLVATDIAARGLDIEE 313 (456)
T ss_pred HHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCC---HHHHHHHHHHHHcCCCcEEEEccHHhcCCCccc
Confidence 777764 68999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
|++|||||+|.++++|+||+ ++ .+.+++|+++ +|..+++.|++.++....
T Consensus 314 v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~-~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCV-DEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred CCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecH-HHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999 22 2389999998 899999999999887653
No 28
>KOG0337|consensus
Probab=100.00 E-value=2.7e-33 Score=325.10 Aligned_cols=302 Identities=20% Similarity=0.200 Sum_probs=265.1
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
...+++|.++.|...- ..+.-..++.|+|+||+|.=....-+.+|..+ ++.+.+||..+
T Consensus 72 taaf~ipm~e~Lk~~s----------~~g~RalilsptreLa~qtlkvvkdlgrgt~l-----------r~s~~~ggD~~ 130 (529)
T KOG0337|consen 72 TAAFLIPMIEKLKSHS----------QTGLRALILSPTRELALQTLKVVKDLGRGTKL-----------RQSLLVGGDSI 130 (529)
T ss_pred hhhHHHHHHHHHhhcc----------ccccceeeccCcHHHHHHHHHHHHHhccccch-----------hhhhhcccchH
Confidence 3457788888876654 12334578999999999999999999999988 66899999999
Q ss_pred chhhhhhhhhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAE 999 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQt 999 (1858)
+.|+.-+....|+++|||++++...--. .+-|.+| ||.+||+||.+++|||+++ +.+|+..+|..|||
T Consensus 131 eeqf~~l~~npDii~ATpgr~~h~~vem------~l~l~sv--eyVVfdEadrlfemgfqeq----l~e~l~rl~~~~QT 198 (529)
T KOG0337|consen 131 EEQFILLNENPDIIIATPGRLLHLGVEM------TLTLSSV--EYVVFDEADRLFEMGFQEQ----LHEILSRLPESRQT 198 (529)
T ss_pred HHHHHHhccCCCEEEecCceeeeeehhe------eccccce--eeeeehhhhHHHhhhhHHH----HHHHHHhCCCcceE
Confidence 9999999999999999999999633211 1234555 6666777777999999999 99999999999999
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc--cCCcccEEEEEEECChhhHHHHHH
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK--PSSVHLVKQYLIRTPKSQKIVNLL 1077 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~--~~~~~~I~Q~~~~v~~~~Kl~~Ll 1077 (1858)
++| |||.|..+-++++..+.+|+.|.++ .+-.+.++..+..+++.+|...|+
T Consensus 199 llf--------------------------Satlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 199 LLF--------------------------SATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred EEE--------------------------eccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 999 9999999999999999999888754 444455888999999999999999
Q ss_pred HhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1078 SFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1078 ~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
+++.+ +++||||.|+..|+++...|+..|+.+..+.|.|+ |..|...+.+|+.++..+||.||+||||+|||-
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD---~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLD---QEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccC---hHhhhhccccccCCccceEEEehhhhccCCCcc
Confidence 99875 58999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
.+.|||||+|.+..-|+||+ || .+++++||.+ +|..++-+|..++++...
T Consensus 330 ldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~-~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 330 LDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAS-TDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ccccccccCCCCCceEEEEecchhhccccceEEEEEec-ccchhhhhhhhhcCCcee
Confidence 99999999999999999999 45 4499999999 889999999999988544
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=9.3e-32 Score=343.78 Aligned_cols=308 Identities=18% Similarity=0.171 Sum_probs=254.3
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+-+++|+++.|..-.... .. ......+.+|-|+|+||.|+-..+..+.....+ +...++||..+
T Consensus 60 Tlafllpil~~l~~~~~~~---~~-~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i-----------~v~~l~Gg~~~ 124 (572)
T PRK04537 60 TLAFLVAVMNRLLSRPALA---DR-KPEDPRALILAPTRELAIQIHKDAVKFGADLGL-----------RFALVYGGVDY 124 (572)
T ss_pred HHHHHHHHHHHHHhccccc---cc-ccCCceEEEEeCcHHHHHHHHHHHHHHhccCCc-----------eEEEEECCCCH
Confidence 3456777777765422111 11 012345799999999999998887766655443 55778999998
Q ss_pred chhhhhhhhhcccccccccccccC--c-cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH-
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMS--P-NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK- 995 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~--~-~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk- 995 (1858)
..+...+.+..++++.||+++++. . ..........+|+|||++ |.++||..+ ++.|++.+++
T Consensus 125 ~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~----------lld~gf~~~----i~~il~~lp~~ 190 (572)
T PRK04537 125 DKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR----------MFDLGFIKD----IRFLLRRMPER 190 (572)
T ss_pred HHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH----------HhhcchHHH----HHHHHHhcccc
Confidence 888887888899999999999862 2 233344555677777777 899999999 9999999987
Q ss_pred -HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhH
Q psy15269 996 -FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQK 1072 (1858)
Q Consensus 996 -~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~K 1072 (1858)
.||+++| |||++..+.+++..++.+|..+.+..... ..+.|.++.+...+|
T Consensus 191 ~~~q~ll~--------------------------SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k 244 (572)
T PRK04537 191 GTRQTLLF--------------------------SATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEK 244 (572)
T ss_pred cCceEEEE--------------------------eCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHH
Confidence 6889999 99999999999999999998887754433 348899988888899
Q ss_pred HHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCC
Q psy15269 1073 IVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149 (1858)
Q Consensus 1073 l~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGL 1149 (1858)
+..|+.++.. .++||||+|++.|+.+++.|.+.|+.+..+||+|+ +.+|.+++++|++|+++||||||+++|||
T Consensus 245 ~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~---~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 245 QTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP---QKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC---HHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 9988888764 78999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCC
Q psy15269 1150 DFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHV 1206 (1858)
Q Consensus 1150 DIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~i 1206 (1858)
||++|++|||||+|.++++|+||+ +| .+.+|+|+++ .+...+.+|++.++.++...
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~-~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE-RYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecH-HHHHHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999 22 2389999998 78888999999887765443
No 30
>KOG0332|consensus
Probab=99.97 E-value=2.2e-31 Score=305.60 Aligned_cols=281 Identities=15% Similarity=0.128 Sum_probs=231.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccc-cCCchhhhhhhhhcccccccccccccCc---c
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAG-LEPSTAIIDIDKFVRDMRHVSNNILMSP---N 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG-~~~~~q~~dl~~~v~~l~~t~~~ll~~~---~ 945 (1858)
.++-|.|||+||.|+|.-.-.|.....++- .+ .+.|+ ...|.. -.-.+++.||+.++|.. .
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita-----~y-----air~sk~~rG~~-----i~eqIviGTPGtv~Dlm~klk 226 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTA-----SY-----AIRGSKAKRGNK-----LTEQIVIGTPGTVLDLMLKLK 226 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeE-----EE-----EecCcccccCCc-----chhheeeCCCccHHHHHHHHH
Confidence 346679999999999999999888774422 11 12222 111111 01236899999999833 3
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
-....+..-++||+||- |+-+.||+++ --.|+..+|+.-|-++|
T Consensus 227 ~id~~kikvfVlDEAD~---------Mi~tqG~~D~----S~rI~~~lP~~~QllLF----------------------- 270 (477)
T KOG0332|consen 227 CIDLEKIKVFVLDEADV---------MIDTQGFQDQ----SIRIMRSLPRNQQLLLF----------------------- 270 (477)
T ss_pred hhChhhceEEEecchhh---------hhhccccccc----chhhhhhcCCcceEEee-----------------------
Confidence 34555667788999955 5666899999 78899999999999999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECCh-hhHHHHHHHhhc---CCcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPK-SQKIVNLLSFLE---GKRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~-~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+-+.+.++|.+.++||..+.++.+..+ +|+|+|+.|+. .+|++.|..+.. -+++||||.||++|..|+
T Consensus 271 ---SATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~ 347 (477)
T KOG0332|consen 271 ---SATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLY 347 (477)
T ss_pred ---echhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHH
Confidence 999999999999999999988888766544 59999999974 567777766543 489999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
..|+..|+.+..+||+|. -.+|.+++++||.|+.+|||+|+|.|||||++.|++|||||+|. |+++|+|||
T Consensus 348 ~~m~~~Gh~V~~l~G~l~---~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRi 424 (477)
T KOG0332|consen 348 EEMRAEGHQVSLLHGDLT---VEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRI 424 (477)
T ss_pred HHHHhcCceeEEeeccch---hHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHh
Confidence 999999999999999999 99999999999999999999999999999999999999999995 679999999
Q ss_pred ------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1174 ------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1174 ------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
|++|.||+|+...+...++..|+++++.....+.
T Consensus 425 GRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 425 GRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred cccccccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 4555899999987888999999999988766544
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=7e-31 Score=326.83 Aligned_cols=302 Identities=16% Similarity=0.210 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|..|.++.+.- .....++++-|+|+||.|+-+.+..+.....+ +...+.||..+.
T Consensus 53 ~~~~lp~l~~l~~~~~~~-------~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~-----------~v~~~~gg~~~~ 114 (434)
T PRK11192 53 AAFLLPALQHLLDFPRRK-------SGPPRILILTPTRELAMQVADQARELAKHTHL-----------DIATITGGVAYM 114 (434)
T ss_pred HHHHHHHHHHHhhccccC-------CCCceEEEECCcHHHHHHHHHHHHHHHccCCc-----------EEEEEECCCCHH
Confidence 446788888887653322 12335699999999999999988888776655 346678999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+....+++++||+++++ ..+.........+|+|||++ |.++||..+ ++.|...++..+|
T Consensus 115 ~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~----------~l~~~~~~~----~~~i~~~~~~~~q 180 (434)
T PRK11192 115 NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR----------MLDMGFAQD----IETIAAETRWRKQ 180 (434)
T ss_pred HHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH----------HhCCCcHHH----HHHHHHhCccccE
Confidence 8887787788999999999986 22333334456677888877 999999999 9999999999999
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcH-hHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECC-hhhHHH
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWG-DIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTP-KSQKIV 1074 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~-~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~-~~~Kl~ 1074 (1858)
+++| |||++. .+.++++.++++|+.+.+..... ..+.|.++.++ ...|..
T Consensus 181 ~~~~--------------------------SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~ 234 (434)
T PRK11192 181 TLLF--------------------------SATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTA 234 (434)
T ss_pred EEEE--------------------------EeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHH
Confidence 9999 999985 59999999999999998765443 34888888776 467888
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCC
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDI 1151 (1858)
.|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|..++++|++|+++||||||+++||||+
T Consensus 235 ~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~---~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 235 LLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMV---QAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCC---HHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 88888864 78999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
|+|++|||||+|.+.+.|+||+| | .+.+++|++. .|..++..|++++.....
T Consensus 312 p~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~-~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 312 DDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEA-HDHLLLGKIERYIEEPLK 369 (434)
T ss_pred CCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecH-HHHHHHHHHHHHHhcccc
Confidence 99999999999999999999992 2 2379999997 889999999998876543
No 32
>KOG0347|consensus
Probab=99.97 E-value=1.5e-32 Score=326.11 Aligned_cols=327 Identities=16% Similarity=0.172 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHhhhccccccccccccCc--cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 842 RYFLAILPLLDSLNQLLPMQGNYTETNS--FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 842 ~~l~~LL~~Ld~~n~~~P~~~~~~~~~~--~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
-+-+|+++-|++..-+--+..+...... ..+++.|||+||.||=+|+......+.++. ..++||+..
T Consensus 235 AFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v-----------~si~GGLav 303 (731)
T KOG0347|consen 235 AFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRV-----------ASITGGLAV 303 (731)
T ss_pred eecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEE-----------EEeechhHH
Confidence 3556666655544433322222211111 469999999999999999999988887744 667999999
Q ss_pred chhhhhhhhhccccccccccccc--Ccc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN 994 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp 994 (1858)
..|++=|....++++|||||+.. .+. -.+.....-+|+||+|| |.+-|.-.+ +..|++.|.
T Consensus 304 qKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDR----------mvekghF~E----ls~lL~~L~ 369 (731)
T KOG0347|consen 304 QKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADR----------MVEKGHFEE----LSKLLKHLN 369 (731)
T ss_pred HHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHH----------HhhhccHHH----HHHHHHHhh
Confidence 99999999999999999999983 222 22333455567999999 999999899 777777665
Q ss_pred -----HHHHHHhhhcc-CCCCcccccccccccccccccCCCCCCcHhHHHHHHH--hcCCCEEEEEccCCccc--EEEEE
Q psy15269 995 -----KFRAELLSAVS-NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNI--EVEDPIMKLVKPSSVHL--VKQYL 1064 (1858)
Q Consensus 995 -----k~RQtLLf~~~-~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~--~L~dpv~I~v~~~~~~~--I~Q~~ 1064 (1858)
+.||||.|... .-.-.......+.. ... ..+....|+.+.++ |-.+|..|.+.+...+. +....
T Consensus 370 e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~-----~~k-~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~ 443 (731)
T KOG0347|consen 370 EEQKNRQRQTLVFSATLTLVLQQPLSSSRKK-----KDK-EDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESL 443 (731)
T ss_pred hhhcccccceEEEEEEeehhhcChhHHhhhc-----cch-hhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHh
Confidence 57899999100 00000000000000 000 02233445555543 23478888887665443 77777
Q ss_pred EECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec
Q psy15269 1065 IRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT 1142 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT 1142 (1858)
+.|+..+|--.|+.||.. +++|||||+.+.+.+|+-+|+..+++...||..|. |.+|.+.|++|++....|||||
T Consensus 444 I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~---QKqRLknLEkF~~~~~~VLiaT 520 (731)
T KOG0347|consen 444 IECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMI---QKQRLKNLEKFKQSPSGVLIAT 520 (731)
T ss_pred hcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHH---HHHHHHhHHHHhcCCCeEEEee
Confidence 889999999999999876 89999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcC
Q psy15269 1143 LSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSN 1203 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~ 1203 (1858)
||||||||||+|+|||||.+|++.+-||||. |+.. .++.|+.| .|...++.|-+-+++..
T Consensus 521 DVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P-~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 521 DVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP-QEVGPLKKLCKTLKKKE 586 (731)
T ss_pred hhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh-HHhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998 3333 78889999 78888888888887643
No 33
>KOG1427|consensus
Probab=99.97 E-value=5.1e-31 Score=293.95 Aligned_cols=300 Identities=26% Similarity=0.400 Sum_probs=247.7
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCC--CeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPS--NIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT 254 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~--~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~ 254 (1858)
|+.....+++.|.||.|..||||+++......|+.++... +|++.+||.+||++|+++|+||+||.| |+|+++..
T Consensus 69 H~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~ 148 (443)
T KOG1427|consen 69 HCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAK 148 (443)
T ss_pred hEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccc
Confidence 4445568999999999999999999888888999998775 589999999999999999999999987 88888754
Q ss_pred CCC-CceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc--------------cccceeeecCC
Q psy15269 255 IQP-LPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS--------------QRRPKLIMGGL 319 (1858)
Q Consensus 255 ~~~-~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~--------------~~~P~~V~~~l 319 (1858)
..- .|..+... ...|..|+||..+++.|+..+.+.++|.-.|||||+++... +..|..|. .+
T Consensus 149 ~~v~s~~~~~~~--~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~-~~ 225 (443)
T KOG1427|consen 149 NEVESTPLPCVV--SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIA-SL 225 (443)
T ss_pred cccccCCCcccc--CccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccc-cc
Confidence 321 22222111 22455677999999999999999999999999999987542 23455555 37
Q ss_pred CCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC----ceEEeecCceEEEEEcCCCEEE
Q psy15269 320 YGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD----VGAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 320 ~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~----I~~IAcG~~HTlaLt~dG~tVy 395 (1858)
.+..|++++||.+|++|++++++||+||.+.||+||+...++...|++++.+.. -.++.||+..++++.+-|. +|
T Consensus 226 dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~-Lf 304 (443)
T KOG1427|consen 226 DGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQ-LF 304 (443)
T ss_pred cceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccce-eE
Confidence 888999999999999999999999999999999999999988899998876542 5789999999999999995 99
Q ss_pred EEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe-------CCCCCCCccccccEEecC
Q psy15269 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG-------LGLRSSSISFHTPVLVTG 468 (1858)
Q Consensus 396 sWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG-------LG~gss~~~~~~P~~V~~ 468 (1858)
.||.+.. +......|+.+..+.+-++..+-||+.|.+ +..|.....|| +|.+........|+.++.
T Consensus 305 ~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~ 377 (443)
T KOG1427|consen 305 MWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDM 377 (443)
T ss_pred Eeecccc------CcccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccccccCccccch
Confidence 9998763 223456788888888888999999988754 56677888999 555555556678999999
Q ss_pred CCCCCEEEEEEcCceEEEEEeC
Q psy15269 469 LSSHQIVDVSIGDSHVLALSQY 490 (1858)
Q Consensus 469 l~~~~Iv~Ia~G~~HtlALt~d 490 (1858)
+.+.+|-+|++|..|+++|.++
T Consensus 378 l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 378 LEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred hcceeccceeeccceEEEEEcc
Confidence 9999999999999999999764
No 34
>KOG0346|consensus
Probab=99.96 E-value=5e-29 Score=290.77 Aligned_cols=308 Identities=17% Similarity=0.214 Sum_probs=248.0
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.+.+|+|||+.|=.--..- ..+......|+-|+|+||.|+=..+..+.. .|.+-++..=+..-+..
T Consensus 70 T~AYliPllqkll~~k~t~-----~~e~~~sa~iLvPTkEL~qQvy~viekL~~---------~c~k~lr~~nl~s~~sd 135 (569)
T KOG0346|consen 70 TAAYLIPLLQKLLAEKKTN-----DGEQGPSAVILVPTKELAQQVYKVIEKLVE---------YCSKDLRAINLASSMSD 135 (569)
T ss_pred hHHHHHHHHHHHHHhhhcc-----cccccceeEEEechHHHHHHHHHHHHHHHH---------HHHHhhhhhhhhcccch
Confidence 4568889988874433322 224555668999999999998766555433 23333333333333333
Q ss_pred chhhhhhhhhcccccccccccccCccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAE 999 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQt 999 (1858)
.....-|.+..+++++||++++........ ..+|.+ .|.+.|+||+|+.-||+++ +..|.+.||+.-|.
T Consensus 136 sv~~~~L~d~pdIvV~TP~~ll~~~~~~~~-----~~~~~l--~~LVvDEADLllsfGYeed----lk~l~~~LPr~~Q~ 204 (569)
T KOG0346|consen 136 SVNSVALMDLPDIVVATPAKLLRHLAAGVL-----EYLDSL--SFLVVDEADLLLSFGYEED----LKKLRSHLPRIYQC 204 (569)
T ss_pred HHHHHHHccCCCeEEeChHHHHHHHhhccc-----hhhhhe--eeEEechhhhhhhcccHHH----HHHHHHhCCchhhh
Confidence 333455556778999999999975443321 345555 5667777889999999999 99999999999999
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc---cEEEEEEECChhhHHHHH
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH---LVKQYLIRTPKSQKIVNL 1076 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~---~I~Q~~~~v~~~~Kl~~L 1076 (1858)
+|- |||..++|+.+.+.+|+||+.+.+...+.. .+.|+++.|.+.+|+..+
T Consensus 205 ~Lm--------------------------SATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 205 FLM--------------------------SATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred eee--------------------------hhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 998 999999999999999999999988765544 399999999999999999
Q ss_pred HHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc---------
Q psy15269 1077 LSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL--------- 1143 (1858)
Q Consensus 1077 l~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD--------- 1143 (1858)
+.+++- +|+|||+||.+++-+|--+|++.|++...+.|.|+ +..|..++++|..|-.+|+||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP---~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELP---ANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhccccc---ccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 888763 89999999999999999999999999999999999 99999999999999999999999
Q ss_pred --------------------------ccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHH
Q psy15269 1144 --------------------------SDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGL 1191 (1858)
Q Consensus 1144 --------------------------VAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~ 1191 (1858)
-++|||||.+|..|||||+|.+++.||||+ |++. .+++|+.| .+..-
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P-~e~~g 414 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSP-KEEFG 414 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecc-hHHhh
Confidence 246999999999999999999999999999 3333 99999999 66665
Q ss_pred HHHHHHHHhhc
Q psy15269 1192 ASSLIKLLEYS 1202 (1858)
Q Consensus 1192 l~~Ie~~l~~~ 1202 (1858)
...|+..+...
T Consensus 415 ~~~le~~~~d~ 425 (569)
T KOG0346|consen 415 KESLESILKDE 425 (569)
T ss_pred hhHHHHHHhhH
Confidence 57777777664
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.2e-28 Score=310.10 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=240.8
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh-hccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK-FVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~--~~~ 945 (1858)
..+++|-|+|+||.|+-+.+..+.....+ +...+.||.....+..++.+ ..++++.||.++++ ...
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~-----------~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~ 231 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGL-----------NVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG 231 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCC-----------EEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 45689999999999998888777654433 44667899888888888875 68899999999986 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH--HHHHHhhhccCCCCcccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK--FRAELLSAVSNAPSFDDNNVSMGVTSTQ 1023 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk--~RQtLLf~~~~~~s~~~~~~s~~~~~~~ 1023 (1858)
.........+|+||+++ +.++||.++ ++.|++.++. .+|.+++
T Consensus 232 ~~~l~~l~~lViDEah~----------l~~~~~~~~----l~~i~~~~~~~~~~q~i~~--------------------- 276 (475)
T PRK01297 232 EVHLDMVEVMVLDEADR----------MLDMGFIPQ----VRQIIRQTPRKEERQTLLF--------------------- 276 (475)
T ss_pred CcccccCceEEechHHH----------HHhcccHHH----HHHHHHhCCCCCCceEEEE---------------------
Confidence 33344455666777766 889999999 9999998875 4688888
Q ss_pred cccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHH
Q psy15269 1024 HNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1024 ~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L 1098 (1858)
|||++..+.++++.++.+|..+.+..... ..+.|.++.+...+|...|.+++.. .++||||++++.++.+
T Consensus 277 -----SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l 351 (475)
T PRK01297 277 -----SATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRI 351 (475)
T ss_pred -----EeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHH
Confidence 99999999999999999999987765443 3478888888888888888887764 6899999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG 1175 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag 1175 (1858)
++.|.+.|+.+..+||+++ +.+|.+++++|++|+++||||||+++|||||++|++|||||+|.+.++|+||+ |+
T Consensus 352 ~~~L~~~~~~~~~~~g~~~---~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 352 EERLVKDGINAAQLSGDVP---QHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred HHHHHHcCCCEEEEECCCC---HHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999 22
Q ss_pred ---cceEEEEecCcccHHHHHHHHHHHhhcC-CCCCC
Q psy15269 1176 ---HKEAIAFYDPVADIGLASSLIKLLEYSN-KHVPT 1208 (1858)
Q Consensus 1176 ---~~~aitfvt~~~e~~~l~~Ie~~l~~~~-q~ip~ 1208 (1858)
.+.+++|++. +|..++..++++++... .++|+
T Consensus 429 ~g~~g~~i~~~~~-~d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 429 AGASGVSISFAGE-DDAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred CCCCceEEEEecH-HHHHHHHHHHHHhCCCCcccCCc
Confidence 2378999997 78889999999998876 35443
No 36
>KOG4284|consensus
Probab=99.96 E-value=3.3e-29 Score=300.65 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=231.9
Q ss_pred eechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccccc
Q psy15269 872 WLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYESD 949 (1858)
Q Consensus 872 ~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~ 949 (1858)
.|+.|||++|.||-.....+..++.= ++..+|.||.....+..++.+ .++++.||||++. ..++.+-
T Consensus 97 ~Iv~PTREiaVQI~~tv~~v~~sf~g----------~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~ 165 (980)
T KOG4284|consen 97 VIVTPTREIAVQIKETVRKVAPSFTG----------ARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNM 165 (980)
T ss_pred EEEecchhhhhHHHHHHHHhcccccC----------cceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCc
Confidence 89999999999999887776553322 355899999887666666654 4589999999996 7778888
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcC-CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTA-LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mG-F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
+..--+||||||+ |.++| |+.+ +..|+.+||+.||-+.|
T Consensus 166 s~vrlfVLDEADk----------L~~t~sfq~~----In~ii~slP~~rQv~a~-------------------------- 205 (980)
T KOG4284|consen 166 SHVRLFVLDEADK----------LMDTESFQDD----INIIINSLPQIRQVAAF-------------------------- 205 (980)
T ss_pred cceeEEEeccHHh----------hhchhhHHHH----HHHHHHhcchhheeeEE--------------------------
Confidence 8888899999999 77766 9999 99999999999999999
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEECCh--------hhHHHHHHHhhcC---CcEEEEecChHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRTPK--------SQKIVNLLSFLEG---KRSLIFVKTYRDA 1095 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v~~--------~~Kl~~Ll~lL~~---~k~IIFvnTk~~a 1095 (1858)
|||-|..+.++..+||+||..|......... |+|+|+.++. +.|+..|-++++. .++||||+...+|
T Consensus 206 SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra 285 (980)
T KOG4284|consen 206 SATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRA 285 (980)
T ss_pred eccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhh
Confidence 9999999999999999999999987666554 8999987753 2356666666554 8999999999999
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--
Q psy15269 1096 SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-- 1173 (1858)
Q Consensus 1096 d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-- 1173 (1858)
+-++..|...|+++..|.|.|+ |.+|..+++++|+-.++|||+||+.|||||-++|++|||.|.|.|-++|.|||
T Consensus 286 ~~~a~~L~ssG~d~~~ISgaM~---Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGR 362 (980)
T KOG4284|consen 286 EPIATHLKSSGLDVTFISGAMS---QKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGR 362 (980)
T ss_pred hHHHHHhhccCCCeEEeccccc---hhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhh
Confidence 9999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred ----cCcceEEEEecCcccHHHHHHH
Q psy15269 1174 ----AGHKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1174 ----ag~~~aitfvt~~~e~~~l~~I 1195 (1858)
|..|.|+||+...++..-+..+
T Consensus 363 AgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 363 AGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred cccccccceeEEEeccchhhhhhHHH
Confidence 3334899999875664443344
No 37
>KOG4367|consensus
Probab=99.96 E-value=7.6e-29 Score=284.76 Aligned_cols=162 Identities=19% Similarity=0.274 Sum_probs=156.1
Q ss_pred ceeeeEecCCCceE-EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCC
Q psy15269 1408 DIDSVSFDKEKCVC-CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTT 1485 (1858)
Q Consensus 1408 ~v~~f~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~ 1485 (1858)
.||||.|||..++. ++++|+..|++++|..||.+||+.+|++|+||||+.||+++++++ +.||||+-.|+ +-|+|+|
T Consensus 531 ~vawfqlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsd-ivigvaqpavnrnvmlgkd 609 (699)
T KOG4367|consen 531 EVAWFQLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSD-IVIGVAQPAVNRNVMLGKD 609 (699)
T ss_pred ceeeeeccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCC-ceEEecchhhhhceeeccc
Confidence 49999999999999 999999999999999999999999999999999999999998888 99999999999 9999999
Q ss_pred Ccee-EEEeCCceee-eCCCC-CccCCCcCCCCEEEEEEeccCceEEEEeCCcccc-ccccCCCCCCceeEEEEEeecCC
Q psy15269 1486 GDMW-LYRAYSGNVY-HSGEQ-TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPH-LAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1486 ~~~W-~y~~~~g~~~-h~~~~-~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~G-vAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
.++| ||.+..++|| ||..+ +|..++++.|.+|||.||+|+||+.|++|+++.| +||.|+.+ -+|||+|+
T Consensus 610 lhgwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmrg--lyypafsv----- 682 (699)
T KOG4367|consen 610 LHGWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMRG--LYYPAFSV----- 682 (699)
T ss_pred ccceeEEEcCcceeEEeccccccccccccccccEEEEEEeccCCceEEEeccccCCceeeecccc--eeeeeeEe-----
Confidence 9999 9999999999 88887 9999999999999999999999999999999999 99999955 49999999
Q ss_pred CCCeEEEEEeeeccCCC
Q psy15269 1562 NGEKVKITDMTVCETPR 1578 (1858)
Q Consensus 1562 ~~~~v~~~~~~~~~~p~ 1578 (1858)
|++++|+.++++..|.
T Consensus 683 -nanssitvhtglssps 698 (699)
T KOG4367|consen 683 -NANSSITVHTGLSSPS 698 (699)
T ss_pred -ccCceEEEecCCCCCC
Confidence 9999999999998885
No 38
>KOG0344|consensus
Probab=99.95 E-value=1.5e-27 Score=289.05 Aligned_cols=315 Identities=21% Similarity=0.175 Sum_probs=252.4
Q ss_pred cccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcC--CCCCCCccchhhhccccccc
Q psy15269 835 RSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDML--LGPPEAHEETETVHWLKTSL 912 (1858)
Q Consensus 835 ~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~--~~~pl~~~e~~~~~wL~s~~ 912 (1858)
.+.+ .|.+++|+|..|-.+++-- + -.+..+.|++|+|+||-||=+.+..+- .++..+-...
T Consensus 183 GsgK-tlaf~~Pil~~L~~~~~~~----~--~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~---------- 245 (593)
T KOG0344|consen 183 GSGK-TLAFNLPILQHLKDLSQEK----H--KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQF---------- 245 (593)
T ss_pred CCcc-hhhhhhHHHHHHHHhhccc----C--ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhc----------
Confidence 3444 7889999999999999721 0 134456899999999999999988887 5555533211
Q ss_pred cccccCCchhhhhhhh-hcccccccccccccC----ccccccccccceeecccchhhhhhHHhhhhhhc-CCCchhhHHH
Q psy15269 913 LSAGLEPSTAIIDIDK-FVRDMRHVSNNILMS----PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQT-ALSPREKTVL 986 (1858)
Q Consensus 913 ~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~~----~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~m-GF~~~~~esL 986 (1858)
..-.........+++ --|+++.||++++.. .-......+..+|+||+|+ +++- +|..| +
T Consensus 246 -~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~----------lfe~~~f~~Q----l 310 (593)
T KOG0344|consen 246 -SKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADL----------LFEPEFFVEQ----L 310 (593)
T ss_pred -ccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHh----------hhChhhHHHH----H
Confidence 211111112222222 355789999998852 2235667778888888877 6665 88889 8
Q ss_pred HHHHHHhHHHHH-HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEE
Q psy15269 987 EQIFSVVNKFRA-ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQY 1063 (1858)
Q Consensus 987 ~~Il~~Lpk~RQ-tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~ 1063 (1858)
..||+.+....- .-+| |||+|..|++.++..+.+++.|.++..+ .+.|+|.
T Consensus 311 a~I~sac~s~~i~~a~F--------------------------Sat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 311 ADIYSACQSPDIRVALF--------------------------SATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred HHHHHHhcCcchhhhhh--------------------------hccccHHHHHHHHHhhccceeEEEecchhHhhhhhhh
Confidence 888887754221 2255 9999999999999999999999887554 3458888
Q ss_pred EEECC-hhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHH-hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTP-KSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAV-QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~-~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L-~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++|. ...|+..+.+++.. ..++||+.++++|..|.+.| .-.++++..+||+.+ |.+|..++++||.|++.+
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~---~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS---QKQRDETMERFRIGKIWV 441 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccc---hhHHHHHHHHHhccCeeE
Confidence 88775 56788888888875 78999999999999999999 678999999999999 999999999999999999
Q ss_pred EEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1139 VIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1139 LVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
|||||+.+|||||.+|+.|||||+|...-.||||| ||++ .|||||+. +|..+++.|...+.....++|++.-
T Consensus 442 LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd-~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 442 LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTD-QDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecc-ccchhhhhHHHHHHHcCCcchHHHH
Confidence 99999999999999999999999999999999999 4444 89999998 9999999999999999999997543
No 39
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=1.7e-26 Score=284.31 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=234.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+||.|+...+..+.....+ +.....||.....+...+.++.++++.||+++.+ ..++.
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~ 166 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYLKV-----------RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHL 166 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhcCc-----------eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCc
Confidence 4689999999999998876665443322 2233467766656666666778899999999875 44455
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+|+|||+. +.+.||... +.+|++.++...|.+++
T Consensus 167 ~l~~i~lvViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~i~~------------------------- 207 (401)
T PTZ00424 167 RVDDLKLFILDEADE----------MLSRGFKGQ----IYDVFKKLPPDVQVALF------------------------- 207 (401)
T ss_pred ccccccEEEEecHHH----------HHhcchHHH----HHHHHhhCCCCcEEEEE-------------------------
Confidence 556666777888877 788888888 88999888887888888
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||+|.++.++...++.+|..+.+.... ...++++++.++. ..+...+..++. ..++||||+|++.++.+++.
T Consensus 208 -SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~ 286 (401)
T PTZ00424 208 -SATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKK 286 (401)
T ss_pred -EecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHH
Confidence 9999999999999999999888765433 3347888877765 345555665554 37899999999999999999
Q ss_pred HhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC------
Q psy15269 1102 VQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG------ 1175 (1858)
Q Consensus 1102 L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag------ 1175 (1858)
|+..++.+..+||+|+ +.+|..++++|++|+++||||||+++||||+|+|++|||||+|.+..+|+||+|+
T Consensus 287 l~~~~~~~~~~h~~~~---~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 287 MHERDFTVSCMHGDMD---QKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999999922
Q ss_pred cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1176 HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1176 ~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
.|.+++|+++ ++...++.+++.++...++.+.
T Consensus 364 ~G~~i~l~~~-~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 364 KGVAINFVTP-DDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CceEEEEEcH-HHHHHHHHHHHHHCCcccccCc
Confidence 2379999998 8899999999999988777664
No 40
>KOG0329|consensus
Probab=99.92 E-value=1.4e-26 Score=254.71 Aligned_cols=253 Identities=19% Similarity=0.236 Sum_probs=213.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.-+|+||+||...-..+...+|- .+..+|+||+.+..+..-+.+...++++||+|++- ..+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~----------vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l 181 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPS----------VKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSL 181 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCC----------ceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccC
Confidence 4588999999999998887766666665 36789999999999998888888899999999994 66778
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
++.+...+|||+.|+ ||-+....++ +.+|++..|..+|-++|
T Consensus 182 ~lk~vkhFvlDEcdk---------mle~lDMrRD----vQEifr~tp~~KQvmmf------------------------- 223 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDK---------MLEQLDMRRD----VQEIFRMTPHEKQVMMF------------------------- 223 (387)
T ss_pred chhhcceeehhhHHH---------HHHHHHHHHH----HHHHhhcCcccceeeee-------------------------
Confidence 888899999999988 3444556677 99999999999999999
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCccc---EEEEEEECChhhH---HHHHHHhhcCCcEEEEecChHHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHL---VKQYLIRTPKSQK---IVNLLSFLEGKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~---I~Q~~~~v~~~~K---l~~Ll~lL~~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||.+++|+...++||.||..|-++.++.-. ++|+|+...+.+| +..|++.|.-.+++||+.+..+
T Consensus 224 -satlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R------- 295 (387)
T KOG0329|consen 224 -SATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR------- 295 (387)
T ss_pred -eeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------
Confidence 9999999999999999999999998765544 7999988765554 5555555666999999987665
Q ss_pred HhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cC
Q psy15269 1102 VQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AG 1175 (1858)
Q Consensus 1102 L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag 1175 (1858)
++ | ..+ +||||+..||+||..|++|||||+|.++++|.||+ |.
T Consensus 296 --------------l~-------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 296 --------------LS-------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 344 (387)
T ss_pred --------------hh-------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccc
Confidence 22 4 224 89999999999999999999999999999999999 22
Q ss_pred cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1176 HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1176 ~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
++.||+|+...++...+..+...+...+.++|+.
T Consensus 345 kglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 345 KGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 3389999998788899999999888888888863
No 41
>KOG0783|consensus
Probab=99.91 E-value=1.9e-24 Score=263.79 Aligned_cols=294 Identities=28% Similarity=0.397 Sum_probs=223.0
Q ss_pred CCeEEEEcCCCCCCCCcCCCCCcccccccCCCCC----eEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCc
Q psy15269 187 HSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSN----IRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLP 259 (1858)
Q Consensus 187 ~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~----IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P 259 (1858)
..+||+||+|.+.-||.|.......|..+..+.. +.+|+.|.+|++|+++.|+||+||.| ++|.|+......|
T Consensus 141 pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iP 220 (1267)
T KOG0783|consen 141 PNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIP 220 (1267)
T ss_pred ccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccc
Confidence 3789999999999999999999999999987754 78999999999999999999999986 9999998889999
Q ss_pred eeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc-cccceeeecC-CCC-CcEEEEEecCceEEE
Q psy15269 260 KRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS-QRRPKLIMGG-LYG-KRVTQVSAGHSHSAA 336 (1858)
Q Consensus 260 ~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~-~~~P~~V~~~-l~~-~~IvqVa~G~~HS~a 336 (1858)
++|+.. ...+|.+|+....|+++||++|.||+||.|.++|||..+... ...|..|... +.+ +.|+.|+||..|+++
T Consensus 221 krV~gL-~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVa 299 (1267)
T KOG0783|consen 221 KRVPGL-IGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVA 299 (1267)
T ss_pred cccccc-cccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeee
Confidence 998863 345677788999999999999999999999999999876653 3456665421 122 379999999999999
Q ss_pred EEeCCeEEEEecCCCCCCCCCCC-Ccccccccccc-CCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCcee
Q psy15269 337 VTEDGLLYTWGEGDHGRLGHGDL-KSRHTPTLVTE-LSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVT 414 (1858)
Q Consensus 337 LT~dG~VYtWG~N~~GQLG~G~~-~~~~~P~~V~~-l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~ 414 (1858)
.|+. .||+||.|. ||||..+. ....+|..+.. ...|..|+|....|++++.+| .+|++-+-+.-.+..+ ....
T Consensus 300 wt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~-~i~~~ady~~~k~~~n--~~~l 374 (1267)
T KOG0783|consen 300 WTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNN-SIIAFADYNQVKLPFN--VDFL 374 (1267)
T ss_pred eecc-eEEEecccC-ceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCC-cEEEEecccceecCcc--hhcc
Confidence 9966 799999986 99998764 45677865543 345899999999999999999 4998875443322211 1111
Q ss_pred ccEEeee----cccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeC
Q psy15269 415 TPKVIEA----LRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQY 490 (1858)
Q Consensus 415 ~P~~V~~----l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~d 490 (1858)
.-..|.+ ..-.++.+..+....-+++|+-|.||.|-.-+.........| +.-..|.+|+--.+..+++|.|
T Consensus 375 ks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~c~ftp-----~r~~~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 375 KSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTSCKFTP-----LRIFEISDIAWTANSLILCTRD 449 (1267)
T ss_pred ceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceeeeeccc-----ceeeehhhhhhccceEEEEecC
Confidence 1111110 111345666777788899999999999982222211112222 2223577899888999999999
Q ss_pred C
Q psy15269 491 N 491 (1858)
Q Consensus 491 G 491 (1858)
|
T Consensus 450 G 450 (1267)
T KOG0783|consen 450 G 450 (1267)
T ss_pred c
Confidence 9
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=8.1e-24 Score=277.49 Aligned_cols=294 Identities=12% Similarity=0.090 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|+|+.|.+- ....+.+|-|+|+||.++-+.+..+. ... ++...+.|+.. .
T Consensus 66 la~~LPiL~~l~~~------------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~-----------i~v~~~~Gdt~-~ 120 (742)
T TIGR03817 66 LAYQLPVLSALADD------------PRATALYLAPTKALAADQLRAVRELT-LRG-----------VRPATYDGDTP-T 120 (742)
T ss_pred HHHHHHHHHHHhhC------------CCcEEEEEcChHHHHHHHHHHHHHhc-cCC-----------eEEEEEeCCCC-H
Confidence 44677887777541 12246889999999999999888764 111 23344555544 4
Q ss_pred hhhhhhhhhccccccccccccc-----Cccc-cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM-----SPNY-ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN 994 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~-----~~~~-~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp 994 (1858)
.+...+.+..++++.||..+.. ...| ........+|+|||++ |.+ .|..+ +..+++.++
T Consensus 121 ~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~----------~~g-~fg~~----~~~il~rL~ 185 (742)
T TIGR03817 121 EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS----------YRG-VFGSH----VALVLRRLR 185 (742)
T ss_pred HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh----------ccC-ccHHH----HHHHHHHHH
Confidence 4555556677889999977652 2223 2245567788888887 655 36667 666766665
Q ss_pred HH-------HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc-ccEEEEEEE
Q psy15269 995 KF-------RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV-HLVKQYLIR 1066 (1858)
Q Consensus 995 k~-------RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~-~~I~Q~~~~ 1066 (1858)
+. +|.+++ |||++...+ +++.++.+|+.+ +..+.. ....+.++.
T Consensus 186 ri~~~~g~~~q~i~~--------------------------SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~ 237 (742)
T TIGR03817 186 RLCARYGASPVFVLA--------------------------SATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALW 237 (742)
T ss_pred HHHHhcCCCCEEEEE--------------------------ecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEe
Confidence 54 456677 999998865 788888888765 332222 222233222
Q ss_pred CCh-----------------hhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhC--------CCeEEEEecCCCCcc
Q psy15269 1067 TPK-----------------SQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDS--------NMMTIPMSNNGTSWS 1120 (1858)
Q Consensus 1067 v~~-----------------~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~--------g~~~~~LHG~ms~~~ 1120 (1858)
.+. .++...+.++++. .++||||+|++.|+.+++.|++. +..+..+||+++
T Consensus 238 ~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~--- 314 (742)
T TIGR03817 238 EPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYL--- 314 (742)
T ss_pred cCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCC---
Confidence 221 2455556666654 89999999999999999998763 678899999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC--c-ceEEEEecC-cccHHHHH
Q psy15269 1121 HVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG--H-KEAIAFYDP-VADIGLAS 1193 (1858)
Q Consensus 1121 Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag--~-~~aitfvt~-~~e~~~l~ 1193 (1858)
|++|.+++++|++|++++|||||+++|||||++|++|||||+|.+.++|+||+ |+ + +.++++... ..|..+++
T Consensus 315 ~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 315 PEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 22 2 278888763 15667788
Q ss_pred HHHHHHhhcCCC
Q psy15269 1194 SLIKLLEYSNKH 1205 (1858)
Q Consensus 1194 ~Ie~~l~~~~q~ 1205 (1858)
.++++++...++
T Consensus 395 ~~~~~~~~~~e~ 406 (742)
T TIGR03817 395 HPEALFDRPVEA 406 (742)
T ss_pred CHHHHhcCCCcc
Confidence 888888765543
No 43
>KOG3953|consensus
Probab=99.90 E-value=4.2e-24 Score=234.41 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=138.3
Q ss_pred eEecCCCceE--EEEecCCeEEEecC--CCCceEEecccccCceEEEEEEEEeecCCCc-ceEEEEEeeccc----cCCC
Q psy15269 1412 VSFDKEKCVC--CTVECGGQSLIHGP--GTRGYGVANIGITRGCYQWKFLIVNEHKGNE-GTCIGVTRWPIR----DYNH 1482 (1858)
Q Consensus 1412 f~~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~-~~~vGva~~~~~----~~~~ 1482 (1858)
++|-|+..+. .+.+++++++.-.- ....-+.|..+|++|.|+|+++|+...+|.+ ++||+++.+|++ -.+.
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 5788876555 55666667765332 2366788999999999999999999999999 699999999999 5677
Q ss_pred CCCCceeEEEeCCceeeeCCCC------CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEE-
Q psy15269 1483 RTTGDMWLYRAYSGNVYHSGEQ------TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVL- 1555 (1858)
Q Consensus 1483 ~~~~~~W~y~~~~g~~~h~~~~------~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs- 1555 (1858)
|+++++|||.-.+++|||+|.. ....|+|.+||+|+|+|||++||++|++|++|+||||++++ +++|||+||
T Consensus 107 Gs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~-~~~LYP~Vsa 185 (242)
T KOG3953|consen 107 GSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK-DKKLYPAVSA 185 (242)
T ss_pred CCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC-CCcceeeeee
Confidence 8999999999999999999953 33477899999999999999999999999999999999997 557999999
Q ss_pred EeecCCCCCeEEEEEeeeccCCC
Q psy15269 1556 FYSTNANGEKVKITDMTVCETPR 1578 (1858)
Q Consensus 1556 ~y~~~~~~~~v~~~~~~~~~~p~ 1578 (1858)
+||+++ +.|+|+|.|+
T Consensus 186 v~g~~E-------vtm~Ylg~~~ 201 (242)
T KOG3953|consen 186 VWGHCE-------VTMKYLGTLD 201 (242)
T ss_pred hhccee-------EEEEEeCCcC
Confidence 999999 9999999997
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.90 E-value=1.1e-23 Score=271.97 Aligned_cols=261 Identities=12% Similarity=0.119 Sum_probs=200.0
Q ss_pred echHhHHHHHHHHHHhCCcCCCCCCCccchhhhcc-------------ccccccccccCCchhhhhhhhhcccccccc--
Q psy15269 873 LIDMERALALLIGKTLGDMLLGPPEAHEETETVHW-------------LKTSLLSAGLEPSTAIIDIDKFVRDMRHVS-- 937 (1858)
Q Consensus 873 lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~w-------------L~s~~~~GG~~~~~q~~dl~~~v~~l~~t~-- 937 (1858)
++-|+|+||.|+-.++..+....+..+ +.+...| ++...++||..++.|...+.+++.++++|+
T Consensus 67 ~~vPtReLa~Qi~~~~~~~~k~l~~~~-~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~ 145 (844)
T TIGR02621 67 YVVNRRTVVDQVTEEAEKIGERLPDVP-EVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDM 145 (844)
T ss_pred EeCchHHHHHHHHHHHHHHHHHhcccc-hhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHH
Confidence 466999999999999999888765433 2333344 788899999999999999999999999995
Q ss_pred --ccccc-----Cc-----cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh--HHH---HHHH
Q psy15269 938 --NNILM-----SP-----NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV--NKF---RAEL 1000 (1858)
Q Consensus 938 --~~ll~-----~~-----~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L--pk~---RQtL 1000 (1858)
++.|. +. .....++...+||||| + ++|||..+ +++|++.+ ++. ||++
T Consensus 146 i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEA----------D--Ld~gF~~~----l~~Il~~l~rp~~~rprQtL 209 (844)
T TIGR02621 146 IGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEA----------H--LEPAFQEL----LKQIMNEQQRPPDFLPLRVV 209 (844)
T ss_pred HcCCccccccccccccccchhhhhccceEEEEehh----------h--hccccHHH----HHHHHHhcccCcccccceEE
Confidence 22221 00 0011334455555555 4 57999999 99999976 432 6999
Q ss_pred hhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECChhhHHHHHHH
Q psy15269 1001 LSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTPKSQKIVNLLS 1078 (1858)
Q Consensus 1001 Lf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~~~~Kl~~Ll~ 1078 (1858)
+| |||+|.++.++++.++++|+.+.+..+..+ .+.|+ +.++...|+..++.
T Consensus 210 LF--------------------------SAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~Kl~~lv~ 262 (844)
T TIGR02621 210 EL--------------------------TATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEKFLSTMVK 262 (844)
T ss_pred EE--------------------------ecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHHHHHHHHH
Confidence 99 999999999999999999988777544333 36664 45555555554443
Q ss_pred h----hc--CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH-----HHHHHHhc----CC-------C
Q psy15269 1079 F----LE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECL-----ELLNLFNT----GK-------S 1136 (1858)
Q Consensus 1079 l----L~--~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~-----~~L~~Fr~----G~-------~ 1136 (1858)
. +. .+++||||||+++|+.+++.|++.++ ..|||+|+ |.+|. +++++|++ |+ .
T Consensus 263 ~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~---q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 263 ELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLR---GAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCC---HHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 2 22 37899999999999999999999887 89999999 99999 88999987 54 6
Q ss_pred cEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCc-c-eEEEEecC
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGH-K-EAIAFYDP 1185 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~-~-~aitfvt~ 1185 (1858)
.|||||||++|||||+. ++|||++.| .++||||+ +|+ + .+++++.+
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 89999999999999987 899999887 58999999 222 2 45788754
No 45
>KOG0350|consensus
Probab=99.90 E-value=5.1e-23 Score=244.11 Aligned_cols=310 Identities=19% Similarity=0.178 Sum_probs=222.6
Q ss_pred cHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 840 TLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 840 ~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
.|.+.+|+++.|-.-. -+...+.+|=|+|+|++||-+.+..+-+|.-++. ....|--.+
T Consensus 197 TLaY~iPIVQ~L~~R~----------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V-----------~~~sgq~sl 255 (620)
T KOG0350|consen 197 TLAYVIPIVQLLSSRP----------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAV-----------CSLSGQNSL 255 (620)
T ss_pred eeeehhHHHHHHccCC----------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEE-----------Eecccccch
Confidence 4667788888775431 1222357899999999999999999999988854 344555444
Q ss_pred chhhhhhhh-----hcccccccccccccCcc---ccccccccceeecccchhhhhhHH----hhhhhhcC----------
Q psy15269 920 STAIIDIDK-----FVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVY----SYLIQQTA---------- 977 (1858)
Q Consensus 920 ~~q~~dl~~-----~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~----A~lL~~mG---------- 977 (1858)
..+..+|.. .+|++++||+||.|+-+ --++....++|+|||||-. +.++ ..+|.+.+
T Consensus 256 ~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll-~qsfQ~Wl~~v~~~~~~~k~~~~~~n 334 (620)
T KOG0350|consen 256 EDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL-DQSFQEWLDTVMSLCKTMKRVACLDN 334 (620)
T ss_pred HHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH-HHHHHHHHHHHHHHhCCchhhcChhh
Confidence 556666653 36899999999998544 3445567788899999911 1111 11122211
Q ss_pred -------CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 978 -------LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 978 -------F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
+++-.-.++...+-.+++-.+.|+| |||+.+.-.+++.--+..|-..
T Consensus 335 ii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~--------------------------satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 335 IIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF--------------------------SATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred hhhhcccCCchhhHHHHhhcCCcCchhHhhhc--------------------------chhhhcChHHHhhhhcCCCceE
Confidence 0111011111111112223334444 9999888888888888999444
Q ss_pred EEcc------CCcccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHh----hCCCeEEEEecCCC
Q psy15269 1051 LVKP------SSVHLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQ----DSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1051 ~v~~------~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~----~~g~~~~~LHG~ms 1117 (1858)
.+.. .-...+.++++.++...|-..++.++.. .++|+|+++...+.+++..|+ ...+++..+.|.++
T Consensus 389 ~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred EeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 3321 1222378888888888888888888865 899999999999999999988 35778889999999
Q ss_pred CccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcc-eEEEEecCcccHHH
Q psy15269 1118 SWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGL 1191 (1858)
Q Consensus 1118 ~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~-~aitfvt~~~e~~~ 1191 (1858)
+..|.+.+++|++|++++|||||+.|||||+.+|+.|||||+|.+...||||+ ||+. .|+++++. .+.+.
T Consensus 469 ---~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~-~~~r~ 544 (620)
T KOG0350|consen 469 ---GKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK-HEKRL 544 (620)
T ss_pred ---HHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc-ccchH
Confidence 99999999999999999999999999999999999999999999999999999 4444 89999998 55555
Q ss_pred HHHHHHHHhh
Q psy15269 1192 ASSLIKLLEY 1201 (1858)
Q Consensus 1192 l~~Ie~~l~~ 1201 (1858)
+.++.+..+.
T Consensus 545 F~klL~~~~~ 554 (620)
T KOG0350|consen 545 FSKLLKKTNL 554 (620)
T ss_pred HHHHHHHhcc
Confidence 4444444433
No 46
>KOG0783|consensus
Probab=99.89 E-value=3.8e-23 Score=252.60 Aligned_cols=297 Identities=27% Similarity=0.413 Sum_probs=219.4
Q ss_pred EEEecCCcEEEEccc---ccCCCCCCCCCCceeecCcc-CcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCc
Q psy15269 232 FLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEA-AIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTL 307 (1858)
Q Consensus 232 laLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~~~-~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~ 307 (1858)
++++.-..||.||.| .||.|+......|.+|.+.. ...-+.+|+.+..|++++++.|+||++|.+..|.||+|+..
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 445666899999987 89999999999999998662 22224445689999999999999999999999999999988
Q ss_pred ccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCC-ccc-----cccccccCCCceEEeecC
Q psy15269 308 SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK-SRH-----TPTLVTELSDVGAVSCGE 381 (1858)
Q Consensus 308 ~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~-~~~-----~P~~V~~l~~I~~IAcG~ 381 (1858)
....|+.|++ +.+.+|.+|++...|+++||++|.||+||.|..+|||..+.. ... ++..+++.+.|+.|+||.
T Consensus 216 ~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 216 YNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 8899999997 899999999999999999999999999999999999997643 223 344556666799999999
Q ss_pred ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCc-eeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe-CCCCC--CC
Q psy15269 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK-VTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG-LGLRS--SS 457 (1858)
Q Consensus 382 ~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~-~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG-LG~gs--s~ 457 (1858)
.|+++-++.- ||+||.|+ ||||..+... +.+|..+.. ....|..+.|....+++++.+|.+|++- ...-. ..
T Consensus 295 ~hsVawt~~~--VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n 370 (1267)
T KOG0783|consen 295 SHSVAWTDTD--VYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPFN 370 (1267)
T ss_pred ceeeeeecce--EEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEecccceecCcc
Confidence 9999999876 99999875 9999876643 466765532 3446899999999999999999999987 11000 00
Q ss_pred ccccccEEecC----CCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEec
Q psy15269 458 ISFHTPVLVTG----LSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAG 533 (1858)
Q Consensus 458 ~~~~~P~~V~~----l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G 533 (1858)
.....-..|.+ +.-.++..-.+...-.+++|+-|+||.|-.++.-. +.-. -.|..+. .|.+|+--
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~-ftp~r~~-----~isdIa~~ 439 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCK-FTPLRIF-----EISDIAWT 439 (1267)
T ss_pred hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeee-cccceee-----ehhhhhhc
Confidence 00001111111 01123455555666678999999999999764211 0001 1233332 24566655
Q ss_pred CcceEEEeecCCCC
Q psy15269 534 SLFSIAYTVPPSNS 547 (1858)
Q Consensus 534 ~~hS~alt~~~~dG 547 (1858)
.+.-++.| .||
T Consensus 440 ~N~~~~~t---~dG 450 (1267)
T KOG0783|consen 440 ANSLILCT---RDG 450 (1267)
T ss_pred cceEEEEe---cCc
Confidence 55556666 677
No 47
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.86 E-value=3.2e-21 Score=248.29 Aligned_cols=254 Identities=14% Similarity=0.077 Sum_probs=184.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++-|+|+||.|++..++..+....... ++-.+.+||... .+.....+..++++.|++-.+ ...
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g--------~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-----~~L 289 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDG--------SPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-----NKL 289 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCC--------ceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-----ccc
Confidence 467888999999998888765443222111 122567888761 111112235567777765211 134
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh-HHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV-NKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L-pk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
.....+|+|||++ +..+| +.+..+++.+ ++.||+++|
T Consensus 290 ~~v~~VVIDEaHE----------r~~~~------DllL~llk~~~~~~rq~ILm-------------------------- 327 (675)
T PHA02653 290 FDYGTVIIDEVHE----------HDQIG------DIIIAVARKHIDKIRSLFLM-------------------------- 327 (675)
T ss_pred ccCCEEEcccccc----------Cccch------hHHHHHHHHhhhhcCEEEEE--------------------------
Confidence 4566788999999 44444 2366666555 455789999
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECC----------hhhH---HHHHHHhhc--CCcEEEEecChH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP----------KSQK---IVNLLSFLE--GKRSLIFVKTYR 1093 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~----------~~~K---l~~Ll~lL~--~~k~IIFvnTk~ 1093 (1858)
|||+|++++++ ++++++|..|.+.......|+|+|+... ..+| +..+..... .+++|||+++++
T Consensus 328 SATl~~dv~~l-~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ 406 (675)
T PHA02653 328 TATLEDDRDRI-KEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVS 406 (675)
T ss_pred ccCCcHhHHHH-HHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHH
Confidence 99999999888 5899999999887554566888887543 1122 222222222 268999999999
Q ss_pred HHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHH-hcCCCcEEEeccccccCCCCCCcceEEEcC---CCC---
Q psy15269 1094 DASRIISAVQDS--NMMTIPMSNNGTSWSHVECLELLNLF-NTGKSSLVIMTLSDFIGNDFTNVEQVIIYN---LPL--- 1164 (1858)
Q Consensus 1094 ~ad~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR~~~L~~F-r~G~~~ILVATDVAARGLDIp~V~~VINyD---lP~--- 1164 (1858)
+++.+++.|++. ++.+..|||+|+ |. .+++++| ++|+.+||||||+|+||||||+|++|||+| .|.
T Consensus 407 ei~~l~~~L~~~~~~~~v~~LHG~Ls---q~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 407 QCEEYKKYLEKRLPIYDFYIIHGKVP---NI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCcC---HH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 999999999987 799999999998 64 5778888 799999999999999999999999999999 665
Q ss_pred ------ChhhhhhhccC-----cceEEEEecC
Q psy15269 1165 ------SINHYVFQIAG-----HKEAIAFYDP 1185 (1858)
Q Consensus 1165 ------~~e~YIHRIag-----~~~aitfvt~ 1185 (1858)
+.++|+||+|+ .|.++.|+++
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~ 513 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDL 513 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECH
Confidence 67899999922 2289999997
No 48
>PRK09401 reverse gyrase; Reviewed
Probab=99.86 E-value=1.9e-21 Score=263.02 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=185.8
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC-chh----hhhhhh-hccccccccccccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP-STA----IIDIDK-FVRDMRHVSNNILM 942 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~-~~q----~~dl~~-~v~~l~~t~~~ll~ 942 (1858)
..+.+|-|+|+||.|+-..+..+.....+. ..++.||-.+ ..+ ...+.+ ..+++++||+++.+
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~~~-----------~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~ 192 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVGCG-----------VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK 192 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcCce-----------EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH
Confidence 346899999999999999988887655542 2445555432 122 223333 37899999999987
Q ss_pred Cccccccccccceeecccchhhhhh-HHhhhhhhcCCC-chhhHHHHHHHHHhHHHHH------HHhhhccCCCCccccc
Q psy15269 943 SPNYESDVNKYSVLLKYIPQQYKNL-VYSYLIQQTALS-PREKTVLEQIFSVVNKFRA------ELLSAVSNAPSFDDNN 1014 (1858)
Q Consensus 943 ~~~~~~~~~~~~~lLd~a~r~y~~~-~~A~lL~~mGF~-~~~~esL~~Il~~Lpk~RQ------tLLf~~~~~~s~~~~~ 1014 (1858)
.-+.........+|+||||+-...- .+..+|..+||. ++ ++.|++.++..+. .+-. .....
T Consensus 193 ~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~----i~~i~~~i~~~~~~~~~~~~i~~-------l~~~i 261 (1176)
T PRK09401 193 NFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED----IEKAMELIRLKRKYEEIYEKIRE-------LEEKI 261 (1176)
T ss_pred HHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH----HHHHHHhcccccccchhhhHHHH-------HHHhh
Confidence 4433333446778899999811100 123345569997 46 8888888875111 0000 00000
Q ss_pred ccccccccccccCCCCCCcHh-HHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHHHHHHhhcC--CcEEEEe
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWGD-IEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFV 1089 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~~-I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFv 1089 (1858)
... .....+....|||+++. ++. .++.++..+.+.... ..+|.|.|+.++ +|...|..+++. .++||||
T Consensus 262 ~~~-~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv 335 (1176)
T PRK09401 262 AEL-KDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRLGDGGLIFV 335 (1176)
T ss_pred hhc-ccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEcc--cHHHHHHHHHHhcCCCEEEEE
Confidence 000 01123344459999875 443 344566666665433 345899988875 455555555543 6899999
Q ss_pred cChHH---HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCC-cceEEEcC
Q psy15269 1090 KTYRD---ASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTN-VEQVIIYN 1161 (1858)
Q Consensus 1090 nTk~~---ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~-V~~VINyD 1161 (1858)
+|++. |+.+++.|+..|+++..+||+|. +.+++|++|+++|||| ||+++||||+|+ |++|||||
T Consensus 336 ~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~--------~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLEDLGINAELAISGFE--------RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ecccChHHHHHHHHHHHHCCCcEEEEeCcHH--------HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeC
Confidence 99888 99999999999999999999982 2469999999999999 799999999999 89999999
Q ss_pred CCC------ChhhhhhhccC
Q psy15269 1162 LPL------SINHYVFQIAG 1175 (1858)
Q Consensus 1162 lP~------~~e~YIHRIag 1175 (1858)
+|. ..+.|+||+++
T Consensus 408 vP~~~~~~~~~~~~~~~~~r 427 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLR 427 (1176)
T ss_pred CCCEEEeccccccCHHHHHH
Confidence 999 78999999943
No 49
>KOG0349|consensus
Probab=99.86 E-value=1.7e-21 Score=226.16 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=207.1
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYES 948 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~ 948 (1858)
..|+.|-|+||-+.=..+..+- +.++.+|. ++-++.||+....|-.++.+++++++.||+|+++ +++-..
T Consensus 289 avivepsrelaEqt~N~i~~Fk--~h~~np~~------r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 289 AVIVEPSRELAEQTHNQIEEFK--MHTSNPEV------RSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred eeEecCcHHHHHHHHhhHHHHH--hhcCChhh------hhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcccee
Confidence 3789999999998865333332 22333343 7789999999999999999999999999999996 544444
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
.+..- |.+.|+|++++.-|+.+- |.....++|+.-..-. +.+...|
T Consensus 361 lt~cr----------FlvlDead~lL~qgy~d~----I~r~h~qip~~tsdg~-----------------rlq~~vC--- 406 (725)
T KOG0349|consen 361 LTHCR----------FLVLDEADLLLGQGYDDK----IYRFHGQIPHMTSDGF-----------------RLQSPVC--- 406 (725)
T ss_pred eeeeE----------EEEecchhhhhhcccHHH----HHHHhccchhhhcCCc-----------------cccccee---
Confidence 33333 444455566887787666 6666666665432110 1111122
Q ss_pred CCCCc-HhHHHHHHHhcCCCEEEEEccCCccc--EEEEEEEC-Chh-----------------------------hHHHH
Q psy15269 1029 SLFSW-GDIEEESNIEVEDPIMKLVKPSSVHL--VKQYLIRT-PKS-----------------------------QKIVN 1075 (1858)
Q Consensus 1029 SAT~p-~~I~~la~~~L~dpv~I~v~~~~~~~--I~Q~~~~v-~~~-----------------------------~Kl~~ 1075 (1858)
|||.. =+|.+++++.|+-|..|.++.+.... +.|.+..+ ++- +-...
T Consensus 407 satlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~ 486 (725)
T KOG0349|consen 407 SATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSS 486 (725)
T ss_pred eeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhh
Confidence 45543 35777888888888877765433221 33322221 110 01222
Q ss_pred HHHhhcC------------CcEEEEecChHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1076 LLSFLEG------------KRSLIFVKTYRDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1076 Ll~lL~~------------~k~IIFvnTk~~ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
-..++++ +|+||||+||..||.|-++|++. .|+++++|||.. +.+|.+.++.|+++.++.||
T Consensus 487 a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrk---P~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 487 ATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRK---PDERKANLESFKKFDVKFLI 563 (725)
T ss_pred hhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCC---hhHHHHHHHhhhhcCeEEEE
Confidence 2223321 78999999999999999999975 478999999998 99999999999999999999
Q ss_pred eccccccCCCCCCcceEEEcCCCCChhhhhhhc---cCcc---eEEEEecCc----------------------------
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AGHK---EAIAFYDPV---------------------------- 1186 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~~---------------------------- 1186 (1858)
|||||||||||.++.+|||.-+|.+-..|+||| ++.+ .||+++...
T Consensus 564 ctdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~ 643 (725)
T KOG0349|consen 564 CTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCC 643 (725)
T ss_pred EehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccccccceE
Confidence 999999999999999999999999999999999 2222 688876432
Q ss_pred ---ccHHHHHHHHHHHhhcCCCCC
Q psy15269 1187 ---ADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1187 ---~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
+|..++.++|..++..++.+.
T Consensus 644 iwyne~~llaeve~hln~ti~qv~ 667 (725)
T KOG0349|consen 644 IWYNEPNLLAEVEDHLNITIQQVD 667 (725)
T ss_pred EEeCchhHHHHHHHhhcceeeeeC
Confidence 234678888888888777554
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.85 E-value=6.8e-21 Score=249.03 Aligned_cols=265 Identities=14% Similarity=0.129 Sum_probs=183.9
Q ss_pred ceechHhHHHHH-HHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh------hcccccccccccccC
Q psy15269 871 LWLIDMERALAL-LIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK------FVRDMRHVSNNILMS 943 (1858)
Q Consensus 871 ~~lld~eR~lal-liG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~------~v~~l~~t~~~ll~~ 943 (1858)
+.+|.|.|+|+. |+-.... ..++...+.||+....+...+.+ ..++++.||.++...
T Consensus 503 TLVISPLiSLmqDQV~~L~~----------------~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~ 566 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----------------ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKS 566 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcc
Confidence 589999999987 5544321 12455667788776666555543 256889999998742
Q ss_pred cc---c----cccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccc
Q psy15269 944 PN---Y----ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNN 1014 (1858)
Q Consensus 944 ~~---~----~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~ 1014 (1858)
.. . ...+....+++|||+. +.+.| |.++ |+.+...|+.+-.
T Consensus 567 d~ll~~L~~L~~~~~LslIVIDEAHc----------VSqWGhDFRpd--------Yr~L~~Lr~~fp~------------ 616 (1195)
T PLN03137 567 DSLLRHLENLNSRGLLARFVIDEAHC----------VSQWGHDFRPD--------YQGLGILKQKFPN------------ 616 (1195)
T ss_pred hHHHHHHHhhhhccccceeccCcchh----------hhhcccchHHH--------HHHHHHHHHhCCC------------
Confidence 11 1 0111233455666655 88988 5555 3333333332100
Q ss_pred ccccccccccccCCCCCCcHhHHHHHHHhc--CCCEEEEEccCCcccEEEEEEECChhhH-HHHHHHhhc----CCcEEE
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWGDIEEESNIEV--EDPIMKLVKPSSVHLVKQYLIRTPKSQK-IVNLLSFLE----GKRSLI 1087 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~~I~~la~~~L--~dpv~I~v~~~~~~~I~Q~~~~v~~~~K-l~~Ll~lL~----~~k~II 1087 (1858)
......+||.+..+++.....| .+++.+ ...-...++. |..+++..+ +..+.+++. ..++||
T Consensus 617 --------vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~--y~Vv~k~kk~le~L~~~I~~~~~~esgII 685 (1195)
T PLN03137 617 --------IPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLW--YSVVPKTKKCLEDIDKFIKENHFDECGII 685 (1195)
T ss_pred --------CCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceE--EEEeccchhHHHHHHHHHHhcccCCCcee
Confidence 0111238999999887665555 344432 2222333443 333444433 456666664 267999
Q ss_pred EecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChh
Q psy15269 1088 FVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSIN 1167 (1858)
Q Consensus 1088 FvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e 1167 (1858)
||+|++.|+.+++.|++.|+.+..+||+|+ +.+|..++++|++|+++|||||++++||||+|+|++|||||+|.+++
T Consensus 686 YC~SRke~E~LAe~L~~~Gika~~YHAGLs---~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiE 762 (1195)
T PLN03137 686 YCLSRMDCEKVAERLQEFGHKAAFYHGSMD---PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIE 762 (1195)
T ss_pred EeCchhHHHHHHHHHHHCCCCeeeeeCCCC---HHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhhhhc--cCc-c---eEEEEecCcccHHHHHHHH
Q psy15269 1168 HYVFQI--AGH-K---EAIAFYDPVADIGLASSLI 1196 (1858)
Q Consensus 1168 ~YIHRI--ag~-~---~aitfvt~~~e~~~l~~Ie 1196 (1858)
.|+||+ ||+ | .|++|+.+ .|...++.+.
T Consensus 763 sYyQriGRAGRDG~~g~cILlys~-~D~~~~~~lI 796 (1195)
T PLN03137 763 GYHQECGRAGRDGQRSSCVLYYSY-SDYIRVKHMI 796 (1195)
T ss_pred HHHhhhcccCCCCCCceEEEEecH-HHHHHHHHHH
Confidence 999999 222 2 79999987 5654444443
No 51
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=4.7e-20 Score=232.31 Aligned_cols=270 Identities=15% Similarity=0.161 Sum_probs=181.6
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhh---hhhhh-hcccccccccccccCcc-
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAI---IDIDK-FVRDMRHVSNNILMSPN- 945 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~---~dl~~-~v~~l~~t~~~ll~~~~- 945 (1858)
..++.|+|+|+.+.-+.+..+ |. +...+.|+.....+. .++.. ..+++..||.++.....
T Consensus 54 ~lVi~P~~~L~~dq~~~l~~~--gi-------------~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~ 118 (470)
T TIGR00614 54 TLVISPLISLMEDQVLQLKAS--GI-------------PATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL 118 (470)
T ss_pred EEEEecHHHHHHHHHHHHHHc--CC-------------cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH
Confidence 478999999998765555322 11 223333333322111 12222 25678899988765331
Q ss_pred ---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 946 ---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 946 ---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
.........+++|||++ +.+.|.. .+..|..+...|+.+-.
T Consensus 119 ~~~l~~~~~i~~iViDEaH~----------i~~~g~~------fr~~~~~l~~l~~~~~~-------------------- 162 (470)
T TIGR00614 119 LQTLEERKGITLIAVDEAHC----------ISQWGHD------FRPDYKALGSLKQKFPN-------------------- 162 (470)
T ss_pred HHHHHhcCCcCEEEEeCCcc----------cCccccc------cHHHHHHHHHHHHHcCC--------------------
Confidence 11334556677888877 7777732 22224444433332200
Q ss_pred ccccCCCCCCcHhHHHHHHHh--cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhc----CCcEEEEecChHHHH
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIE--VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLE----GKRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~--L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~----~~k~IIFvnTk~~ad 1096 (1858)
......|||.++.+++..... +.+|..+... -...++...+.. ...+++..+..++. ..++||||+|++.++
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCTS-FDRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CCCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 001123899999887655554 3566554432 223334322222 12245666666664 256799999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--- 1173 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--- 1173 (1858)
.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+++||||||+++||||+|+|++|||||+|.+++.|+||+
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~---~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLE---ISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCC---HHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cC---cceEEEEecCcccHHHHHHHHH
Q psy15269 1174 AG---HKEAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1174 ag---~~~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
|+ .+.+++|+++ .|...++.+..
T Consensus 318 GR~G~~~~~~~~~~~-~d~~~~~~~~~ 343 (470)
T TIGR00614 318 GRDGLPSECHLFYAP-ADINRLRRLLM 343 (470)
T ss_pred CCCCCCceEEEEech-hHHHHHHHHHh
Confidence 22 2279999998 66665555543
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.83 E-value=1.1e-19 Score=246.71 Aligned_cols=297 Identities=12% Similarity=0.111 Sum_probs=198.7
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhcc--ccccccccccCCchhhhhhhhhccccccccccccc--
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHW--LKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM-- 942 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~w--L~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~-- 942 (1858)
+...+..|.|.|+||.++-+.+...+.+..-.. ....... ++-.+..|+.....+.+.+.+-.++++.||.++..
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~-~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LL 114 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADER-RRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLML 114 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhh-hhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHH
Confidence 345679999999999999988764332211000 0000000 23456778887666666666778999999999864
Q ss_pred -CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccc
Q psy15269 943 -SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTS 1021 (1858)
Q Consensus 943 -~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~ 1021 (1858)
++......+...+|+||++. |.+..+-..+..+++.|...+++..|++.+
T Consensus 115 tsk~r~~L~~Vr~VIVDE~H~----------L~g~kRG~~Lel~LeRL~~l~~~~~QrIgL------------------- 165 (1490)
T PRK09751 115 TSRARETLRGVETVIIDEVHA----------VAGSKRGAHLALSLERLDALLHTSAQRIGL------------------- 165 (1490)
T ss_pred hhhhhhhhccCCEEEEecHHH----------hcccccccHHHHHHHHHHHhCCCCCeEEEE-------------------
Confidence 33344567788888999977 666544444334466666666666788888
Q ss_pred cccccCCCCCCcHhHHHHHHHhc-CCCEEEEEccCCcc-cEEEEEEECChhhH------------------------HHH
Q psy15269 1022 TQHNSTDSLFSWGDIEEESNIEV-EDPIMKLVKPSSVH-LVKQYLIRTPKSQK------------------------IVN 1075 (1858)
Q Consensus 1022 ~~~~~~eSAT~p~~I~~la~~~L-~dpv~I~v~~~~~~-~I~Q~~~~v~~~~K------------------------l~~ 1075 (1858)
|||+++ .+++++... ++|+.|........ .++ .++.+....+ ...
T Consensus 166 -------SATI~n-~eevA~~L~g~~pv~Iv~~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 166 -------SATVRS-ASDVAAFLGGDRPVTVVNPPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred -------EeeCCC-HHHHHHHhcCCCCEEEECCCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 999987 567775433 35776633222111 233 2222221110 112
Q ss_pred HHHhh-cCCcEEEEecChHHHHHHHHHHhhCC---------------------------------CeEEEEecCCCCccH
Q psy15269 1076 LLSFL-EGKRSLIFVKTYRDASRIISAVQDSN---------------------------------MMTIPMSNNGTSWSH 1121 (1858)
Q Consensus 1076 Ll~lL-~~~k~IIFvnTk~~ad~L~~~L~~~g---------------------------------~~~~~LHG~ms~~~Q 1121 (1858)
++..+ ...++|||||||+.|+.++..|++.. +.+..+||+|+ +
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLS---k 313 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS---K 313 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCC---H
Confidence 33333 34789999999999999999997631 12567899999 9
Q ss_pred HHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccCcc-----eEEEEecCcccHHHHH---
Q psy15269 1122 VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGHK-----EAIAFYDPVADIGLAS--- 1193 (1858)
Q Consensus 1122 ~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag~~-----~aitfvt~~~e~~~l~--- 1193 (1858)
++|..+.++||+|++++||||+.+++||||++|++|||||.|.+..+|+||+|+.+ .+..++.+.+...+++
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dlle~~~ 393 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAV 393 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999993332 3444555423333333
Q ss_pred HHHHHHhhcCCC
Q psy15269 1194 SLIKLLEYSNKH 1205 (1858)
Q Consensus 1194 ~Ie~~l~~~~q~ 1205 (1858)
.++.+++...++
T Consensus 394 ~ve~~l~g~iE~ 405 (1490)
T PRK09751 394 IVECMFAGRLEN 405 (1490)
T ss_pred HHHHHhcCCCCc
Confidence 355566555444
No 53
>KOG1428|consensus
Probab=99.82 E-value=1.2e-19 Score=226.06 Aligned_cols=316 Identities=19% Similarity=0.268 Sum_probs=206.2
Q ss_pred eEEEEEcCCEEEEEecCCcEEEEccc-ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEee--CCcEEEEeCCC
Q psy15269 221 IRHIEAGQFCTFLLDSTGGLLVYGKG-WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTS--EGEVYSWGVGE 297 (1858)
Q Consensus 221 IkqVA~G~~hTlaLt~dG~VyawG~N-qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~--dG~VysWG~N~ 297 (1858)
-+++-.|..+.++-+.+|+||..|++ .+|+-...... ..+.++++|+.| +.|-+.++++.- +|-+++-|...
T Consensus 481 tv~L~~~RE~A~iqa~sGKvYYaGn~t~~Gl~e~G~nW--mEL~l~~~IVq~---SVG~D~~~~~~~A~~G~I~~v~D~k 555 (3738)
T KOG1428|consen 481 TVDLHFTREMAFIQARSGKVYYAGNGTRFGLFETGNNW--MELCLPEPIVQI---SVGIDTIMFRSGAGHGWIASVDDKK 555 (3738)
T ss_pred heecccchhhhhhhhcCccEEEecCccEEeEEccCCce--EEecCCCceEEE---EeccchhheeeccCcceEEeccCcc
Confidence 35667788888888999999999998 77755444322 223333444444 467666666655 44455544321
Q ss_pred CCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC--ce
Q psy15269 298 HGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--VG 375 (1858)
Q Consensus 298 ~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~--I~ 375 (1858)
..| ..-+.++ ....+|+.+.+...-.-+++++|++|..|.... .......++.++.+ |.
T Consensus 556 --~~~-------~~Rr~~P--~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm--------~~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 556 --RNG-------RLRRLVP--SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM--------RVNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred --ccc-------chhhcCC--CCcceeEEEeeeeEEEEEEccCCeEEeecceeE--------EecchHHHhhccccceee
Confidence 111 1111222 344678888655444457899999999986421 11123346667777 78
Q ss_pred EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCce-eccEEeee-------------cccccEEEEEecCceE----
Q psy15269 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKV-TTPKVIEA-------------LRKFRVRKVCAGTSFS---- 437 (1858)
Q Consensus 376 ~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~-~~P~~V~~-------------l~~~~Iv~IaaG~~hS---- 437 (1858)
+++.|..|+++++.+|+ +|.||-|+.||+|+-..... ..|..-.. +.+..-+-..||.-..
T Consensus 617 slAlGKsH~~av~rNG~-l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva 695 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGH-LFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA 695 (3738)
T ss_pred hhhccccceeEEEeCCe-EEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc
Confidence 99999999999999996 99999999999998544322 12211110 0111111122222111
Q ss_pred EE--EecCCcEEEEeCC--------------CCCC------------------CccccccEEec---CCCCCCEEEEEEc
Q psy15269 438 VA--LTWDGLVFWWGLG--------------LRSS------------------SISFHTPVLVT---GLSSHQIVDVSIG 480 (1858)
Q Consensus 438 lA--LT~dG~Vy~WGLG--------------~gss------------------~~~~~~P~~V~---~l~~~~Iv~Ia~G 480 (1858)
+. -...|.+..+|.| .+.. ......|..|. +..+.++++|+||
T Consensus 696 C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG 775 (3738)
T KOG1428|consen 696 CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCG 775 (3738)
T ss_pred cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEecc
Confidence 10 0124555555511 1100 00112233332 2334589999999
Q ss_pred CceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCccccc
Q psy15269 481 DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDV 560 (1858)
Q Consensus 481 ~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqL 560 (1858)
.+|+++|.+||+||+||.|.+||||.|++.. ...|+.+..+++..|++|++|++|+++.. .||+||.+|....|||
T Consensus 776 ~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~S-k~~Pq~V~~~~~t~~vQVaAGSNHT~l~~---~DGsVFTFGaF~KGQL 851 (3738)
T KOG1428|consen 776 NFHTVLLASDRRVFTFGSNCHGQLGVGDTLS-KNTPQQVILPSDTVIVQVAAGSNHTILRA---NDGSVFTFGAFGKGQL 851 (3738)
T ss_pred CceEEEEecCCcEEEecCCcccccCcCcccc-CCCcceEEcCCCCceEEEecCCCceEEEe---cCCcEEEeccccCccc
Confidence 9999999999999999999999999998754 35799999999989999999999999987 8999999999999999
Q ss_pred CCcch
Q psy15269 561 RPHTF 565 (1858)
Q Consensus 561 g~~t~ 565 (1858)
+.+.-
T Consensus 852 ~RP~~ 856 (3738)
T KOG1428|consen 852 ARPAG 856 (3738)
T ss_pred cCccc
Confidence 98653
No 54
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.82 E-value=1e-19 Score=246.72 Aligned_cols=250 Identities=10% Similarity=0.086 Sum_probs=174.1
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh---hhh-hcccccccccccccCc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID---IDK-FVRDMRHVSNNILMSP 944 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d---l~~-~v~~l~~t~~~ll~~~ 944 (1858)
..+.+|-|+|+||.|+-..+..+.....+... .-..+.||+....+... +.+ ..+++++||+++.+..
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~--------~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~ 193 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTV--------NIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNY 193 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCcee--------eeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 34689999999999999998887765444221 11235688776554333 334 3889999999998632
Q ss_pred cccccccccceeecccchhhhhh-HHhhhhhhcCCCchhhHHHHHHH----------------------HHhHHHHHHHh
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNL-VYSYLIQQTALSPREKTVLEQIF----------------------SVVNKFRAELL 1001 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~-~~A~lL~~mGF~~~~~esL~~Il----------------------~~Lpk~RQtLL 1001 (1858)
..... ....+++||||+-...- .....|..|||.++ +++.|+ +.+++.||+.+
T Consensus 194 ~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e---~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l 269 (1171)
T TIGR01054 194 DELGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEE---LIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCL 269 (1171)
T ss_pred HHhcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHH---HHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEE
Confidence 21111 55678899999811100 01223444999875 244443 33444455422
Q ss_pred hhccCCCCcccccccccccccccccCCCCC-CcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHH
Q psy15269 1002 SAVSNAPSFDDNNVSMGVTSTQHNSTDSLF-SWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLL 1077 (1858)
Q Consensus 1002 f~~~~~~s~~~~~~s~~~~~~~~~~~eSAT-~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll 1077 (1858)
...||| .|..++. .+++++..+.+.... ..+|.|.|+.++. .+++..++
T Consensus 270 ------------------------i~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll 322 (1171)
T TIGR01054 270 ------------------------IVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIV 322 (1171)
T ss_pred ------------------------EEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEecccHHHHHHHHH
Confidence 113999 6766543 345677667775443 3358888876654 33333333
Q ss_pred HhhcCCcEEEEecCh---HHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCC
Q psy15269 1078 SFLEGKRSLIFVKTY---RDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGND 1150 (1858)
Q Consensus 1078 ~lL~~~k~IIFvnTk---~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLD 1150 (1858)
+.+ ..++||||+|+ +.|+++++.|++.|+++..+||+|+ + +++++|++|+++|||| ||+++||||
T Consensus 323 ~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~---~----~~l~~Fr~G~~~vLVata~~tdv~aRGID 394 (1171)
T TIGR01054 323 KKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP---K----EDYEKFAEGEIDVLIGVASYYGTLVRGLD 394 (1171)
T ss_pred HHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC---H----HHHHHHHcCCCCEEEEeccccCcccccCC
Confidence 333 37899999999 9999999999999999999999997 4 6899999999999999 599999999
Q ss_pred CCC-cceEEEcCCCCC
Q psy15269 1151 FTN-VEQVIIYNLPLS 1165 (1858)
Q Consensus 1151 Ip~-V~~VINyDlP~~ 1165 (1858)
+|+ |++|||||+|..
T Consensus 395 ip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 395 LPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCccccEEEEECCCCE
Confidence 999 899999999987
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.81 E-value=2.2e-19 Score=242.86 Aligned_cols=249 Identities=10% Similarity=0.006 Sum_probs=189.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh---h-hcccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID---K-FVRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~---~-~v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+||.|+-..+...+...|+ +..++.||.....+..-++ + .+++++.||. ++. .
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~~v-----------~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~-lL~-~- 716 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANWPV-----------RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK-LLQ-S- 716 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCc-----------eEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH-HHh-C-
Confidence 4689999999999998888766555444 3345566665544444333 3 4788999985 332 1
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.........+|+||+++ + |+. ..++++.+++.+|+|+|
T Consensus 717 ~v~~~~L~lLVIDEahr----f---------G~~------~~e~lk~l~~~~qvLl~----------------------- 754 (1147)
T PRK10689 717 DVKWKDLGLLIVDEEHR----F---------GVR------HKERIKAMRADVDILTL----------------------- 754 (1147)
T ss_pred CCCHhhCCEEEEechhh----c---------chh------HHHHHHhcCCCCcEEEE-----------------------
Confidence 12234566788999988 2 543 23455677778899999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChh-hHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKS-QKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~-~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
|||+++.+..++..++.||..|...+.....+++++...... .|...+..+.+.++++||||+++.++.+++.|++
T Consensus 755 ---SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~ 831 (1147)
T PRK10689 755 ---TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 (1147)
T ss_pred ---cCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999999987665555577666554432 3444455566678999999999999999999998
Q ss_pred C--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE-----EcCCCCChhhhhhhc---c
Q psy15269 1105 S--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI-----IYNLPLSINHYVFQI---A 1174 (1858)
Q Consensus 1105 ~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI-----NyDlP~~~e~YIHRI---a 1174 (1858)
. ++.+..+||+|+ |.+|.+++++|++|+++||||||+++||||||+|++|| ||++| .|+||+ |
T Consensus 832 ~~p~~~v~~lHG~m~---q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla----q~~Qr~GRvG 904 (1147)
T PRK10689 832 LVPEARIAIGHGQMR---ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA----QLHQLRGRVG 904 (1147)
T ss_pred hCCCCcEEEEeCCCC---HHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH----HHHHHhhccC
Confidence 6 789999999999 99999999999999999999999999999999999999 66654 599998 2
Q ss_pred Ccc---eEEEEec
Q psy15269 1175 GHK---EAIAFYD 1184 (1858)
Q Consensus 1175 g~~---~aitfvt 1184 (1858)
+.+ .|+.++.
T Consensus 905 R~g~~g~a~ll~~ 917 (1147)
T PRK10689 905 RSHHQAYAWLLTP 917 (1147)
T ss_pred CCCCceEEEEEeC
Confidence 222 6676654
No 56
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.80 E-value=7e-19 Score=227.69 Aligned_cols=265 Identities=14% Similarity=0.200 Sum_probs=177.6
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhh---hhhh-hcccccccccccccCcc-
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAII---DIDK-FVRDMRHVSNNILMSPN- 945 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~---dl~~-~v~~l~~t~~~ll~~~~- 945 (1858)
+.++.|.++|+.+.-..+..+ | +....+.++.....+.. ++.. -.+++..||.+++...-
T Consensus 68 tlVisPl~sL~~dqv~~l~~~--g-------------i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~ 132 (607)
T PRK11057 68 TLVVSPLISLMKDQVDQLLAN--G-------------VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL 132 (607)
T ss_pred EEEEecHHHHHHHHHHHHHHc--C-------------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH
Confidence 478899999988765554332 1 11222233332222111 1222 24567788888774211
Q ss_pred -ccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 946 -YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 946 -~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
.........+++|||+. +.+.| |.++ |..+...|+.+-.
T Consensus 133 ~~l~~~~l~~iVIDEaH~----------i~~~G~~fr~~--------y~~L~~l~~~~p~-------------------- 174 (607)
T PRK11057 133 EHLAHWNPALLAVDEAHC----------ISQWGHDFRPE--------YAALGQLRQRFPT-------------------- 174 (607)
T ss_pred HHHhhCCCCEEEEeCccc----------cccccCcccHH--------HHHHHHHHHhCCC--------------------
Confidence 11112335567888877 77766 5555 3444444433200
Q ss_pred ccccCCCCCCcHhHHHHHHHh--cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHH
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIE--VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASR 1097 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~--L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~ 1097 (1858)
......|||.++.++...... +.+|... +......++. |..+.+..++..++.++. ..++||||+|++.|+.
T Consensus 175 ~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~nl~--~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 175 LPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPNIR--YTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (607)
T ss_pred CcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCcce--eeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 000112899998877644333 4566543 2222333442 333445556667777664 3789999999999999
Q ss_pred HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--cC
Q psy15269 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AG 1175 (1858)
Q Consensus 1098 L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--ag 1175 (1858)
+++.|++.|+.+..+||+|+ +.+|.+++++|++|+++|||||++++||||+|+|++|||||+|.+.++|+||+ +|
T Consensus 252 la~~L~~~g~~v~~~Ha~l~---~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 252 TAARLQSRGISAAAYHAGLD---NDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHhCCCCEEEecCCCC---HHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999 22
Q ss_pred c----ceEEEEecCcccHHHHHHH
Q psy15269 1176 H----KEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1176 ~----~~aitfvt~~~e~~~l~~I 1195 (1858)
+ +.+++|+++ .|...++.+
T Consensus 329 R~G~~~~~ill~~~-~d~~~~~~~ 351 (607)
T PRK11057 329 RDGLPAEAMLFYDP-ADMAWLRRC 351 (607)
T ss_pred CCCCCceEEEEeCH-HHHHHHHHH
Confidence 2 278999998 665554443
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.80 E-value=9.8e-19 Score=232.24 Aligned_cols=254 Identities=11% Similarity=0.039 Sum_probs=192.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhh---hhhhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAI---IDIDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~---~dl~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+||.|+-..+..++...|++ ..++.|+.....+. ..+.++ +++++.||. ++. +
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~-----------v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll~-~- 567 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANFPVT-----------IELLSRFRSAKEQNEILKELASGKIDILIGTHK-LLQ-K- 567 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCcE-----------EEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hhh-C-
Confidence 46899999999999988888777666552 34556665533333 334443 778899983 442 2
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........-+|+||++| | | .. .+++++.+++..|.|++
T Consensus 568 ~v~f~~L~llVIDEahr----f---------g--v~----~~~~L~~~~~~~~vL~~----------------------- 605 (926)
T TIGR00580 568 DVKFKDLGLLIIDEEQR----F---------G--VK----QKEKLKELRTSVDVLTL----------------------- 605 (926)
T ss_pred CCCcccCCEEEeecccc----c---------c--hh----HHHHHHhcCCCCCEEEE-----------------------
Confidence 22344567788999988 2 2 12 34455666666778888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHH-hhcCCcEEEEecChHHHHHHHHHHhh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLS-FLEGKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~-lL~~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
|||+++....++...+.++..|...+.....+++++...........+.. +.++.+++||||+++.++.+++.|++
T Consensus 606 ---SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~ 682 (926)
T TIGR00580 606 ---SATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRE 682 (926)
T ss_pred ---ecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHH
Confidence 99998888888888889998888766555567777665443322333333 34568999999999999999999998
Q ss_pred C--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC-Chhhhhhhc---cC---
Q psy15269 1105 S--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL-SINHYVFQI---AG--- 1175 (1858)
Q Consensus 1105 ~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~-~~e~YIHRI---ag--- 1175 (1858)
. ++++..+||+|+ +.+|.+++++|++|+++||||||+++||||||++++||++|.|. ...+|+||+ |+
T Consensus 683 ~~p~~~v~~lHG~m~---~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~ 759 (926)
T TIGR00580 683 LVPEARIAIAHGQMT---ENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK 759 (926)
T ss_pred hCCCCeEEEecCCCC---HHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC
Confidence 4 789999999999 99999999999999999999999999999999999999999986 567899998 22
Q ss_pred cceEEEEecC
Q psy15269 1176 HKEAIAFYDP 1185 (1858)
Q Consensus 1176 ~~~aitfvt~ 1185 (1858)
++.|+.|+.+
T Consensus 760 ~g~aill~~~ 769 (926)
T TIGR00580 760 KAYAYLLYPH 769 (926)
T ss_pred CeEEEEEECC
Confidence 2278888864
No 58
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=5e-19 Score=244.16 Aligned_cols=269 Identities=11% Similarity=0.028 Sum_probs=181.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh---hhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID---IDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d---l~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+|+.|+-..+..+.....+. .+...+.||+....+... +.++ .++++.||+++.+...
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~---------v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~ 194 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLD---------VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFP 194 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCc---------eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHH
Confidence 46899999999999999888776544331 244566788876655433 3344 7899999998886332
Q ss_pred ccccccccceeecccchhhhhh-HHhhhhhhcCCCchhhHHHHH-HHHHhHH-----------HHHHHhhhccCCCCccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNL-VYSYLIQQTALSPREKTVLEQ-IFSVVNK-----------FRAELLSAVSNAPSFDD 1012 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~-~~A~lL~~mGF~~~~~esL~~-Il~~Lpk-----------~RQtLLf~~~~~~s~~~ 1012 (1858)
.........+++||||+-+.-- ....+|..|||.++ +.+ +++.++. ....|-.
T Consensus 195 ~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e----~~~~~~~il~~~~~~~~~~~~~~~~~l~~---------- 260 (1638)
T PRK14701 195 EMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEE----IIEKAWKIIYLKKQGNIEDAMEKREILNK---------- 260 (1638)
T ss_pred HHhhCCCCEEEEECceeccccccccchhhhcCCChHH----HHHHHHHhhhcccccccchhhhhhhhhhh----------
Confidence 2222345678899999811100 01223444899999 543 2222211 0011100
Q ss_pred ccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHHHHhhcC--CcEEEE
Q psy15269 1013 NNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIF 1088 (1858)
Q Consensus 1013 ~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIF 1088 (1858)
..... ....+...+.|||++..-. ..+++++|..+.+..... .++.|.|+.+++.+| ..|+++++. .++|||
T Consensus 261 ~~~~~-~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF 336 (1638)
T PRK14701 261 EIEKI-GNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIF 336 (1638)
T ss_pred hhhhc-CCCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEE
Confidence 00000 0111223446999986411 123457777777765443 358899888776655 456666654 789999
Q ss_pred ecChHHH---HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec----cccccCCCCCC-cceEEEc
Q psy15269 1089 VKTYRDA---SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT----LSDFIGNDFTN-VEQVIIY 1160 (1858)
Q Consensus 1089 vnTk~~a---d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT----DVAARGLDIp~-V~~VINy 1160 (1858)
|+|++.+ +.+++.|++.|+++..+||+ |.+++++|++|+++||||| |+++||||+|+ |++||||
T Consensus 337 ~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--------R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~ 408 (1638)
T PRK14701 337 VPIDEGAEKAEEIEKYLLEDGFKIELVSAK--------NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFY 408 (1638)
T ss_pred EeccccchHHHHHHHHHHHCCCeEEEecch--------HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEe
Confidence 9999864 89999999999999999994 7789999999999999999 59999999999 9999999
Q ss_pred CCCC---Chhhhhhhc
Q psy15269 1161 NLPL---SINHYVFQI 1173 (1858)
Q Consensus 1161 DlP~---~~e~YIHRI 1173 (1858)
|+|. +.+.|.|.+
T Consensus 409 ~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 409 GVPKFRFRVDLEDPTI 424 (1638)
T ss_pred CCCCCCcchhhcccch
Confidence 9999 887666643
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.77 E-value=1.9e-18 Score=227.54 Aligned_cols=255 Identities=11% Similarity=0.013 Sum_probs=183.2
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCc-cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSP-NYES 948 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~-~~~~ 948 (1858)
.+.++-|+|++|.++...+..... .++- ..+|. .+..+ ..+++..++++.|+++++... ..-.
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~-~~~g-------------~~VGy-~vr~~-~~~s~~t~I~v~T~G~Llr~l~~d~~ 110 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLG-EAVG-------------QTVGY-RVRGE-NKVSRRTRLEVVTEGILTRMIQDDPE 110 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhC-CCcC-------------cEEEE-EEccc-cccCCCCcEEEECCcHHHHHHhhCcc
Confidence 468999999999999887642221 1110 00111 11111 122334668899999999511 1234
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+|+||+++ ++++++|.-. .+.+|.+.+++..|.+++
T Consensus 111 L~~v~~VIiDEaHE---------R~L~~Dl~L~---ll~~i~~~lr~dlqlIlm-------------------------- 152 (819)
T TIGR01970 111 LDGVGALIFDEFHE---------RSLDADLGLA---LALDVQSSLREDLKILAM-------------------------- 152 (819)
T ss_pred cccCCEEEEeccch---------hhhccchHHH---HHHHHHHhcCCCceEEEE--------------------------
Confidence 55677788999984 2555444322 134555666677788888
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHH-----HHHHHhhc--CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI-----VNLLSFLE--GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl-----~~Ll~lL~--~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||++.+. + .+|+.++..|.+... ...|+++|..++..+++ ..+.++++ .+++|||++++++++.+++.
T Consensus 153 SATl~~~~--l-~~~l~~~~vI~~~gr-~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 153 SATLDGER--L-SSLLPDAPVVESEGR-SFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred eCCCCHHH--H-HHHcCCCcEEEecCc-ceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHH
Confidence 99999764 3 567877766766533 23488888877655553 23444444 37899999999999999999
Q ss_pred Hhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCCh----h-------
Q psy15269 1102 VQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI----N------- 1167 (1858)
Q Consensus 1102 L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~----e------- 1167 (1858)
|++ .++.+..+||+|+ +++|.++++.|++|+.+|+||||+|+||||||+|++|||+++|... +
T Consensus 229 L~~~~~~~~~v~pLHg~L~---~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 305 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELS---LAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLE 305 (819)
T ss_pred HHhhcCCCcEEEEecCCCC---HHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceee
Confidence 987 4899999999999 9999999999999999999999999999999999999999999743 3
Q ss_pred -------hhhhhc--cCc---ceEEEEecC
Q psy15269 1168 -------HYVFQI--AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1168 -------~YIHRI--ag~---~~aitfvt~ 1185 (1858)
+|+||+ +|+ |.+|.|++.
T Consensus 306 ~~~iSkasa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 306 TVRISQASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred EEEECHHHHHhhhhhcCCCCCCEEEEeCCH
Confidence 489999 332 389999987
No 60
>KOG1428|consensus
Probab=99.75 E-value=5.7e-17 Score=202.79 Aligned_cols=326 Identities=24% Similarity=0.319 Sum_probs=210.5
Q ss_pred eCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEe--cCCcEEEEccc-ccCCCCCCCCCCceee
Q psy15269 186 AHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLD--STGGLLVYGKG-WLGLANTTIQPLPKRV 262 (1858)
Q Consensus 186 s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt--~dG~VyawG~N-qLGlg~~~~~~~P~~V 262 (1858)
.+|+||.-|... .+|.-........ ...+.+|++|+.|-....|+. .+|-++.-|++ ..|. -.+
T Consensus 496 ~sGKvYYaGn~t--~~Gl~e~G~nWmE--L~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~~--------~Rr- 562 (3738)
T KOG1428|consen 496 RSGKVYYAGNGT--RFGLFETGNNWME--LCLPEPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNGR--------LRR- 562 (3738)
T ss_pred cCccEEEecCcc--EEeEEccCCceEE--ecCCCceEEEEeccchhheeeccCcceEEeccCcccccc--------hhh-
Confidence 679999999643 3443333332221 123468999999998888876 45656655533 2111 111
Q ss_pred cCccCcceEEEEEecCcEEE-EEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCC
Q psy15269 263 PLEAAIVSLSVSKCSEAHVL-TVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDG 341 (1858)
Q Consensus 263 ~~~~~i~~Is~Ia~G~~Htl-aLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG 341 (1858)
..+.+-++|+.+ |+..|.+ .+++||++|..|....- .......+.+ +.+.-|.+++-|..|.++++.+|
T Consensus 563 ~~P~n~rKIv~v-~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~-L~~~~isslAlGKsH~~av~rNG 632 (3738)
T KOG1428|consen 563 LVPSNRRKIVHV-CASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNG-LDNVMISSLALGKSHGVAVTRNG 632 (3738)
T ss_pred cCCCCcceeEEE-eeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhc-cccceeehhhccccceeEEEeCC
Confidence 112234455555 5566655 67899999999863210 0011223333 77888999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCCcc-ccccccc----------------cCCCc---------eEEeecCceEEEEEcCCCEEE
Q psy15269 342 LLYTWGEGDHGRLGHGDLKSR-HTPTLVT----------------ELSDV---------GAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 342 ~VYtWG~N~~GQLG~G~~~~~-~~P~~V~----------------~l~~I---------~~IAcG~~HTlaLt~dG~tVy 395 (1858)
.||+||-|+.+|+|.-..... ..|..-. ....| .-++||. +-...| ++.
T Consensus 633 ~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~----~~RP~G-~mC 707 (3738)
T KOG1428|consen 633 HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGR----VPRPKG-TMC 707 (3738)
T ss_pred eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccccc----CCCCCC-ccc
Confidence 999999999999998532211 1111100 00001 1222322 112456 477
Q ss_pred EEeCCCCCCCCCC--------CC-------------------CceeccEEeee---cccccEEEEEecCceEEEEecCCc
Q psy15269 396 SMGSGNLGKLGHE--------DT-------------------GKVTTPKVIEA---LRKFRVRKVCAGTSFSVALTWDGL 445 (1858)
Q Consensus 396 sWG~N~~GQLG~g--------~~-------------------~~~~~P~~V~~---l~~~~Iv~IaaG~~hSlALT~dG~ 445 (1858)
.+|.++.+.+--| .. .....|..|.. ..+.++.+|+||..|++.|.+|++
T Consensus 708 ~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~ 787 (3738)
T KOG1428|consen 708 HCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRR 787 (3738)
T ss_pred ccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCc
Confidence 7777766544221 00 01223444432 345689999999999999999999
Q ss_pred EEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC--cccCe
Q psy15269 446 VFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP--VDQPS 517 (1858)
Q Consensus 446 Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~--vs~P~ 517 (1858)
||+|| +|.|... ....|+.|..+.+..|++|++|.+|++++..||.||+||.-..||||......+ -..|.
T Consensus 788 VfTFG~~~HGQLG~GDt~-Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe 866 (3738)
T KOG1428|consen 788 VFTFGSNCHGQLGVGDTL-SKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPE 866 (3738)
T ss_pred EEEecCCcccccCcCccc-cCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCC
Confidence 99999 6666654 356799999999999999999999999999999999999999999998654321 23566
Q ss_pred eeecCC---CceEEEEEecCcceEEE
Q psy15269 518 KVVGLE---DVCVRQICAGSLFSIAY 540 (1858)
Q Consensus 518 ~V~~L~---~~~I~~Ia~G~~hS~al 540 (1858)
++.++. +.....|.+.++.++.-
T Consensus 867 ~v~~~G~~f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 867 KVSGFGPGFNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred cCCCCCccccccceeeccCCCcceee
Confidence 665542 33456677777766654
No 61
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.75 E-value=1.9e-17 Score=221.57 Aligned_cols=283 Identities=18% Similarity=0.172 Sum_probs=181.3
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCC---------CCCCCccchh
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLL---------GPPEAHEETE 903 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~---------~~pl~~~e~~ 903 (1858)
|...-+ .+-.++|+|+.|.+.... +.. .+...+.+|.|+|+||.++-+.+...+. |..+.
T Consensus 55 PTGSGK-Tlaa~Lpil~~l~~~~~~----~~~-~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~----- 123 (876)
T PRK13767 55 PTGSGK-TLAAFLAIIDELFRLGRE----GEL-EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELP----- 123 (876)
T ss_pred CCCCcH-HHHHHHHHHHHHHhhccc----cCC-CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC-----
Confidence 433444 334566777666543211 111 2344578899999999988654432110 11110
Q ss_pred hhccccccccccccCCchhhhhhhhhccccccccccccc---Cccc-cccccccceeecccchhhhhhHHhhhhhhcCCC
Q psy15269 904 TVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM---SPNY-ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALS 979 (1858)
Q Consensus 904 ~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~~~~-~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~ 979 (1858)
-++..+..|+.....+...+.+..++++.||.++.+ +..+ ........+|+||++. |.+....
T Consensus 124 ---~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~----------l~~~~RG 190 (876)
T PRK13767 124 ---EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS----------LAENKRG 190 (876)
T ss_pred ---CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh----------hccCccH
Confidence 134456778877666666676778899999998864 2222 2344566677888877 6655444
Q ss_pred chhhHHHHHHHHHhHH----HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhc-------CCCE
Q psy15269 980 PREKTVLEQIFSVVNK----FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEV-------EDPI 1048 (1858)
Q Consensus 980 ~~~~esL~~Il~~Lpk----~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L-------~dpv 1048 (1858)
.. ++.+++.+.+ ..|++.+ |||+++ .+++++... ..++
T Consensus 191 ~~----l~~~L~rL~~l~~~~~q~Igl--------------------------SATl~~-~~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 191 VH----LSLSLERLEELAGGEFVRIGL--------------------------SATIEP-LEEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred HH----HHHHHHHHHHhcCCCCeEEEE--------------------------ecccCC-HHHHHHHhcCccccCCCCce
Confidence 44 4444444432 3345555 898765 233443221 1122
Q ss_pred EEE-EccCCcccEEEE-----EEECCh----hhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhC------CCeEEE
Q psy15269 1049 MKL-VKPSSVHLVKQY-----LIRTPK----SQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDS------NMMTIP 1111 (1858)
Q Consensus 1049 ~I~-v~~~~~~~I~Q~-----~~~v~~----~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~------g~~~~~ 1111 (1858)
.+. ........+... ++.... ......+..+++. .++||||||++.|+.++..|++. +..+..
T Consensus 240 ~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 240 EIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred EEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 221 110111111110 011111 1223344455543 78999999999999999999872 467999
Q ss_pred EecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1112 MSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1112 LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
+||+|+ +.+|..++++||+|+++|||||++++||||+++|++|||||.|.+..+|+||+
T Consensus 320 hHg~ls---~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRi 378 (876)
T PRK13767 320 HHSSLS---REVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRI 378 (876)
T ss_pred eeCCCC---HHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhc
Confidence 999999 99999999999999999999999999999999999999999999999999999
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.75 E-value=3.9e-18 Score=224.90 Aligned_cols=255 Identities=13% Similarity=0.079 Sum_probs=181.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcc-ccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPN-YES 948 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~-~~~ 948 (1858)
.+.++-|+|++|.++.+.+.... +.++- ..+ ....+|.. ..++..++++.||++++.... --.
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l-~~~~g-~~V--------Gy~vr~~~------~~~~~t~I~v~T~G~Llr~l~~d~~ 113 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQL-GEKPG-ETV--------GYRMRAES------KVGPNTRLEVVTEGILTRMIQRDPE 113 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHh-CcccC-ceE--------EEEecCcc------ccCCCCcEEEEChhHHHHHHhhCCC
Confidence 46899999999999988754322 11110 000 01111111 112334578999999985211 124
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+|+||+++ . ..++.+.-. .+.+|++.+++..|.+++
T Consensus 114 L~~v~~IIlDEaHE----R-----~l~~Dl~L~---ll~~i~~~lr~~lqlilm-------------------------- 155 (812)
T PRK11664 114 LSGVGLVILDEFHE----R-----SLQADLALA---LLLDVQQGLRDDLKLLIM-------------------------- 155 (812)
T ss_pred cCcCcEEEEcCCCc----c-----ccccchHHH---HHHHHHHhCCccceEEEE--------------------------
Confidence 56677888999987 1 222211111 133455566666677788
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHH-----HHHHhhc--CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIV-----NLLSFLE--GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~-----~Ll~lL~--~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||++.+ .+ ..|+.++..|.+... ...|+++|..++..+++. .+.+++. .+++|||++++++++.+++.
T Consensus 156 SATl~~~--~l-~~~~~~~~~I~~~gr-~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 156 SATLDND--RL-QQLLPDAPVIVSEGR-SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred ecCCCHH--HH-HHhcCCCCEEEecCc-cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 9999875 33 467777766766533 234888888877666654 3444554 37899999999999999999
Q ss_pred Hhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCCh------------
Q psy15269 1102 VQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI------------ 1166 (1858)
Q Consensus 1102 L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~------------ 1166 (1858)
|++ .++.+..+||+|+ +.+|.++++.|++|+.+|+||||+|+|||||++|++|||+++|...
T Consensus 232 L~~~~~~~~~v~~Lhg~l~---~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 308 (812)
T PRK11664 232 LASRVASDVLLCPLYGALS---LAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLV 308 (812)
T ss_pred HHHhccCCceEEEeeCCCC---HHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeE
Confidence 997 5889999999999 9999999999999999999999999999999999999999988654
Q ss_pred ------hhhhhhc--cCc---ceEEEEecC
Q psy15269 1167 ------NHYVFQI--AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1167 ------e~YIHRI--ag~---~~aitfvt~ 1185 (1858)
.+|+||. +|+ |.++.|+++
T Consensus 309 ~~~iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 309 TQRISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred EEeechhhhhhhccccCCCCCcEEEEecCH
Confidence 4799999 332 289999997
No 63
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.74 E-value=1.6e-17 Score=214.97 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=158.7
Q ss_pred ccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhcc
Q psy15269 930 VRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVS 1005 (1858)
Q Consensus 930 v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~ 1005 (1858)
++++..||.++.. ..+.........+++|||+. +.+.| |.++ . ..+...+..+-.
T Consensus 104 ~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~----------i~~~g~~frp~----y----~~l~~l~~~~~~--- 162 (591)
T TIGR01389 104 LKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHC----------VSQWGHDFRPE----Y----QRLGSLAERFPQ--- 162 (591)
T ss_pred CCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcc----------cccccCccHHH----H----HHHHHHHHhCCC---
Confidence 5677889988764 22222334556677888877 66666 5555 3 333333322100
Q ss_pred CCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcC--CCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC-
Q psy15269 1006 NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVE--DPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG- 1082 (1858)
Q Consensus 1006 ~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~--dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~- 1082 (1858)
. .....|||.++.+.+.....+. +|..+ +......++. +...++.++...+..++..
T Consensus 163 -------------~----~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~nl~--~~v~~~~~~~~~l~~~l~~~ 222 (591)
T TIGR01389 163 -------------V----PRIALTATADAETRQDIRELLRLADANEF-ITSFDRPNLR--FSVVKKNNKQKFLLDYLKKH 222 (591)
T ss_pred -------------C----CEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCCCCCCcE--EEEEeCCCHHHHHHHHHHhc
Confidence 0 0112289999998876666553 44433 2222233332 2233445566667766653
Q ss_pred --CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1083 --KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 --~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
.++||||+|++.|+.+++.|+..|+++..+||+|+ +.+|..++++|++|+++|||||+++++|||+|+|++||||
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~---~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLS---NKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCC---HHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhc--cCc---c-eEEEEecCcccHHHHHHH
Q psy15269 1161 NLPLSINHYVFQI--AGH---K-EAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1161 DlP~~~e~YIHRI--ag~---~-~aitfvt~~~e~~~l~~I 1195 (1858)
|+|.+.+.|+||+ +|+ . .++.|+++ .|...++.+
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~-~d~~~~~~~ 339 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSP-ADIALLKRR 339 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCH-HHHHHHHHH
Confidence 9999999999999 222 2 78888887 666555544
No 64
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.71 E-value=2e-16 Score=207.13 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=176.8
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhh---hhhhh-cccccccccccccCccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAII---DIDKF-VRDMRHVSNNILMSPNY 946 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~---dl~~~-v~~l~~t~~~ll~~~~~ 946 (1858)
+.++.|+|+||.|+-..+..++....+ +..++.||........ .+.++ .++++.||..+.+.-.
T Consensus 313 ~lilaPT~~LA~Q~~~~l~~l~~~~~i-----------~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~- 380 (681)
T PRK10917 313 AALMAPTEILAEQHYENLKKLLEPLGI-----------RVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE- 380 (681)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhcCc-----------EEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch-
Confidence 589999999999999888877755443 4578899987544333 34444 7889999987754322
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.....-+|+||++| + |. . .+..+.......+.|++
T Consensus 381 --~~~l~lvVIDE~Hr----f---------g~--~----qr~~l~~~~~~~~iL~~------------------------ 415 (681)
T PRK10917 381 --FHNLGLVIIDEQHR----F---------GV--E----QRLALREKGENPHVLVM------------------------ 415 (681)
T ss_pred --hcccceEEEechhh----h---------hH--H----HHHHHHhcCCCCCEEEE------------------------
Confidence 23456688999988 3 21 1 12222222223445555
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHH-HHHHHhhc-CCcEEEEecC--------hHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI-VNLLSFLE-GKRSLIFVKT--------YRDAS 1096 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl-~~Ll~lL~-~~k~IIFvnT--------k~~ad 1096 (1858)
|||+.+....+......++..|...+.....+++.+....+.+++ ..+...+. +.+++|||++ ...++
T Consensus 416 --SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~ 493 (681)
T PRK10917 416 --TATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAE 493 (681)
T ss_pred --eCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHH
Confidence 999877666555433345444444334344566666655444443 34444443 3799999984 45677
Q ss_pred HHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh-hc
Q psy15269 1097 RIISAVQDS--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF-QI 1173 (1858)
Q Consensus 1097 ~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH-RI 1173 (1858)
.+++.|++. ++++..+||+|+ +.+|.+++++|++|+++|||||++++||+|+|++++||+||.|.....|+| |+
T Consensus 494 ~~~~~L~~~~~~~~v~~lHG~m~---~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~ 570 (681)
T PRK10917 494 ETYEELQEAFPELRVGLLHGRMK---PAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 570 (681)
T ss_pred HHHHHHHHHCCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHh
Confidence 888888865 578999999999 999999999999999999999999999999999999999999986555555 55
Q ss_pred ---cC---cceEEEEec
Q psy15269 1174 ---AG---HKEAIAFYD 1184 (1858)
Q Consensus 1174 ---ag---~~~aitfvt 1184 (1858)
|+ ++.|+.++.
T Consensus 571 GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 571 GRVGRGAAQSYCVLLYK 587 (681)
T ss_pred hcccCCCCceEEEEEEC
Confidence 22 238898885
No 65
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.67 E-value=3.6e-16 Score=161.24 Aligned_cols=114 Identities=31% Similarity=0.449 Sum_probs=100.5
Q ss_pred CceEEEEEEEEeecCCCcceEEEEEeecc---c-cCCCCCCCceeEEEeCCceeeeCCCCCccCCCcCC-CCEEEEEEec
Q psy15269 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPI---R-DYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQ-GDYITVVLDM 1523 (1858)
Q Consensus 1449 ~G~~~W~~~i~~~~~~~~~~~vGva~~~~---~-~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~-gd~i~v~lDm 1523 (1858)
+|+||||++|+.... +.||+++.+. . ....+.+..+|+|+.+++..+|++....+.+.+.. ||+|||.||+
T Consensus 1 sG~~YwEV~v~~~~~----~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~ 76 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGS----ISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDL 76 (124)
T ss_dssp SSEEEEEEEETGGCT----EEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEET
T ss_pred CcCEEEEEEEecCcC----EEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEee
Confidence 699999999988775 9999999999 3 66777888999999999999999999888899998 9999999999
Q ss_pred cCceEEEEeCCcccc-ccccCCCCCCceeEEEEEeecCCCCCeEEEEE
Q psy15269 1524 DAQTLSFGKNGEEPH-LAFQDLDTSAPLYPIVLFYSTNANGEKVKITD 1570 (1858)
Q Consensus 1524 ~~~tl~f~~ng~~~G-vAF~~l~~~~~lyP~Vs~y~~~~~~~~v~~~~ 1570 (1858)
++++|+|++||+.++ .+|++++..++|||+|++++ +.+|++..
T Consensus 77 ~~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~v~~~~----~~~~~~n~ 120 (124)
T PF00622_consen 77 DNGELSFYKNGKFLGIYAFTDIDFSEPLYPAVSLGG----GQSVELNF 120 (124)
T ss_dssp TTTEEEEEETTEEEEEEEEESCTTSSSBEEEEEEES----TSEEEEEE
T ss_pred cccEEEEEECCccceeEEEECCCCCCcEEEEEEecC----CCEEEEEe
Confidence 999999999999999 99999988778999999976 33565543
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=1e-15 Score=195.42 Aligned_cols=155 Identities=9% Similarity=-0.050 Sum_probs=131.3
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC-----CcEEEEecChHHHHHHHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG-----KRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~-----~k~IIFvnTk~~ad~L~~~L 1102 (1858)
.|+|.+...+++.+.|..+|+.|...........+.++.+++.+|...|.+.+.. .++||||+|++.++.+++.|
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L 493 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALL 493 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHH
Confidence 6789998899999999999988877655544466777888889999999888743 57999999999999999999
Q ss_pred hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC---Ccc-----eEEEcCCCCChhhhhhhc-
Q psy15269 1103 QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT---NVE-----QVIIYNLPLSINHYVFQI- 1173 (1858)
Q Consensus 1103 ~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp---~V~-----~VINyDlP~~~e~YIHRI- 1173 (1858)
++.|+++..|||+++ +|++.+..|+.++..|+||||+|+||+||+ +|. ||||||+|.+.+.|+||+
T Consensus 494 ~~~gi~~~~Lhg~~~-----~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~G 568 (656)
T PRK12898 494 REAGLPHQVLNAKQD-----AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAG 568 (656)
T ss_pred HHCCCCEEEeeCCcH-----HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcc
Confidence 999999999999764 555566667777778999999999999999 776 999999999999999999
Q ss_pred --cC---cceEEEEecCccc
Q psy15269 1174 --AG---HKEAIAFYDPVAD 1188 (1858)
Q Consensus 1174 --ag---~~~aitfvt~~~e 1188 (1858)
|+ .|.+++|++. +|
T Consensus 569 RTGRqG~~G~s~~~is~-eD 587 (656)
T PRK12898 569 RCGRQGDPGSYEAILSL-ED 587 (656)
T ss_pred cccCCCCCeEEEEEech-hH
Confidence 22 2389999997 44
No 67
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.67 E-value=4e-16 Score=161.15 Aligned_cols=107 Identities=30% Similarity=0.386 Sum_probs=94.4
Q ss_pred CceEEEEEEEEeecCCCcceEEEEEeeccc---cCCCCCCCceeEEEeCCceeeeCCCCCccCCCcCC-CCEEEEEEecc
Q psy15269 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPIR---DYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQ-GDYITVVLDMD 1524 (1858)
Q Consensus 1449 ~G~~~W~~~i~~~~~~~~~~~vGva~~~~~---~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~-gd~i~v~lDm~ 1524 (1858)
+|+||||++|.. +....||+++.++. +...+++..+|+|+..+|..||++....+.+.+.. ||+|||.||++
T Consensus 1 sG~~YwEV~v~~----~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~ 76 (122)
T smart00449 1 SGRHYFEVEIFD----GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLE 76 (122)
T ss_pred CCcEEEEEEEcC----CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECC
Confidence 699999999986 23488999998887 67889999999999999999999877667778886 99999999999
Q ss_pred CceEEEEeCCccc-cccccCCCCCCceeEEEEEeec
Q psy15269 1525 AQTLSFGKNGEEP-HLAFQDLDTSAPLYPIVLFYST 1559 (1858)
Q Consensus 1525 ~~tl~f~~ng~~~-GvAF~~l~~~~~lyP~Vs~y~~ 1559 (1858)
+|+|+|++||+.+ |+||.+++-..++||+|++++.
T Consensus 77 ~g~l~F~~ng~~~~~~~f~~~~~~~~l~P~~~~~~~ 112 (122)
T smart00449 77 AGTISFYKNGKYLHGLAFFDVKFSGPLYPAVSLGSG 112 (122)
T ss_pred CCEEEEEECCCEeeeEEEeccCCCCcEeeEEEcCCC
Confidence 9999999999999 8999999765579999999643
No 68
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.65 E-value=6.7e-16 Score=207.17 Aligned_cols=242 Identities=12% Similarity=0.044 Sum_probs=170.6
Q ss_pred HhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcc-ccccccccc
Q psy15269 876 MERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPN-YESDVNKYS 954 (1858)
Q Consensus 876 ~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~-~~~~~~~~~ 954 (1858)
..|++|.+|...++.-+. ..+ --++++..+ .++..++++.|||+++..-. -........
T Consensus 130 AArsLA~RVA~El~~~lG-~~V----------------GY~vrf~~~---~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~ 189 (1294)
T PRK11131 130 AARTVANRIAEELETELG-GCV----------------GYKVRFNDQ---VSDNTMVKLMTDGILLAEIQQDRLLMQYDT 189 (1294)
T ss_pred HHHHHHHHHHHHHhhhhc-cee----------------ceeecCccc---cCCCCCEEEEChHHHHHHHhcCCccccCcE
Confidence 489999999988764211 000 001222222 23467789999999996221 123556677
Q ss_pred eeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcH
Q psy15269 955 VLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWG 1034 (1858)
Q Consensus 955 ~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~ 1034 (1858)
+|+|||++ ++++++|... .+..++..- +.+|.+++ |||++.
T Consensus 190 IIIDEAHE---------RsLn~DfLLg---~Lk~lL~~r-pdlKvILm--------------------------SATid~ 230 (1294)
T PRK11131 190 IIIDEAHE---------RSLNIDFILG---YLKELLPRR-PDLKVIIT--------------------------SATIDP 230 (1294)
T ss_pred EEecCccc---------cccccchHHH---HHHHhhhcC-CCceEEEe--------------------------eCCCCH
Confidence 78999983 2777887643 133333221 23577788 999975
Q ss_pred hHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh------hhHHHHHHHhhc------CCcEEEEecChHHHHHHHHHH
Q psy15269 1035 DIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK------SQKIVNLLSFLE------GKRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1035 ~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~------~~Kl~~Ll~lL~------~~k~IIFvnTk~~ad~L~~~L 1102 (1858)
+++++.|.+.|+ |.+.... ..++++|..+.. .+++..++..+. .+++|||++++++++.+++.|
T Consensus 231 --e~fs~~F~~apv-I~V~Gr~-~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L 306 (1294)
T PRK11131 231 --ERFSRHFNNAPI-IEVSGRT-YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADAL 306 (1294)
T ss_pred --HHHHHHcCCCCE-EEEcCcc-ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHH
Confidence 578888877775 6665432 347777776642 334444444321 278999999999999999999
Q ss_pred hhCCCe---EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC---------------CCC
Q psy15269 1103 QDSNMM---TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN---------------LPL 1164 (1858)
Q Consensus 1103 ~~~g~~---~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD---------------lP~ 1164 (1858)
++.+++ +..+||+|+ +.+|.++++. .|+.+|+||||+|+||||||+|++|||++ +|.
T Consensus 307 ~~~~~~~~~VlpLhg~Ls---~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~ 381 (1294)
T PRK11131 307 NKLNLRHTEILPLYARLS---NSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPI 381 (1294)
T ss_pred HhcCCCcceEeecccCCC---HHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCe
Confidence 987765 678999999 9999999886 47889999999999999999999999996 565
Q ss_pred Ch---hhhhhhccC-----cceEEEEecC
Q psy15269 1165 SI---NHYVFQIAG-----HKEAIAFYDP 1185 (1858)
Q Consensus 1165 ~~---e~YIHRIag-----~~~aitfvt~ 1185 (1858)
.+ ++|+||+|+ .|.+|.|+++
T Consensus 382 ~~iSkasa~QRaGRAGR~~~G~c~rLyte 410 (1294)
T PRK11131 382 EPISQASANQRKGRCGRVSEGICIRLYSE 410 (1294)
T ss_pred eecCHhhHhhhccccCCCCCcEEEEeCCH
Confidence 44 789999922 2379999996
No 69
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.64 E-value=3.8e-15 Score=193.98 Aligned_cols=253 Identities=11% Similarity=0.029 Sum_probs=166.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh---hh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID---KF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~---~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++.|+|+||.|+-+.+..++....+ +..++.||+........++ ++ .++++.|+..+.+...
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi-----------~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~ 354 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGI-----------EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE 354 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCc-----------EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc
Confidence 3588999999999999888877665433 4577889987655333333 32 5788999887654332
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH--HHHHHHhhhccCCCCcccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN--KFRAELLSAVSNAPSFDDNNVSMGVTSTQ 1023 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp--k~RQtLLf~~~~~~s~~~~~~s~~~~~~~ 1023 (1858)
.....-+|+||+++ | |.... ..+.+..+ ...+.+++
T Consensus 355 ---~~~l~lvVIDEaH~----f---------g~~qr-----~~l~~~~~~~~~~~~l~~--------------------- 392 (630)
T TIGR00643 355 ---FKRLALVIIDEQHR----F---------GVEQR-----KKLREKGQGGFTPHVLVM--------------------- 392 (630)
T ss_pred ---ccccceEEEechhh----c---------cHHHH-----HHHHHhcccCCCCCEEEE---------------------
Confidence 23456788999988 3 21111 11111111 02334444
Q ss_pred cccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhH-HHHHHHhhc-CCcEEEEecCh--------H
Q psy15269 1024 HNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQK-IVNLLSFLE-GKRSLIFVKTY--------R 1093 (1858)
Q Consensus 1024 ~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~K-l~~Ll~lL~-~~k~IIFvnTk--------~ 1093 (1858)
|||+.+....++...--+...+...+.....+...++.....++ +..+.+.+. ..+++|||++. +
T Consensus 393 -----SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 393 -----SATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred -----eCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 99976655444332211222222222222335555544333222 222223332 47899999865 5
Q ss_pred HHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh
Q psy15269 1094 DASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF 1171 (1858)
Q Consensus 1094 ~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH 1171 (1858)
.++.+++.|++ .++.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||.|.....|+|
T Consensus 468 ~a~~~~~~L~~~~~~~~v~~lHG~m~---~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lh 544 (630)
T TIGR00643 468 AAEALYERLKKAFPKYNVGLLHGRMK---SDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLH 544 (630)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHH
Confidence 67788888876 4788999999999 999999999999999999999999999999999999999999986555555
Q ss_pred -hc---cC---cceEEEEe
Q psy15269 1172 -QI---AG---HKEAIAFY 1183 (1858)
Q Consensus 1172 -RI---ag---~~~aitfv 1183 (1858)
|+ |+ ++.++.++
T Consensus 545 Q~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 545 QLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHhhhcccCCCCcEEEEEE
Confidence 65 22 23788888
No 70
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.62 E-value=2.9e-15 Score=198.88 Aligned_cols=131 Identities=14% Similarity=0.233 Sum_probs=108.4
Q ss_pred hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHh-hCCCeEEEEecCCCCccHHHHHHHHHHHhcC--CCcEEEecc
Q psy15269 1070 SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQ-DSNMMTIPMSNNGTSWSHVECLELLNLFNTG--KSSLVIMTL 1143 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~-~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G--~~~ILVATD 1143 (1858)
..|+..|.++++ .+|+||||+++..++.+.+.|+ +.|+++..+||+|+ +.+|.++++.|+++ ..+||||||
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s---~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMS---IIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCC---HHHHHHHHHHHhcCCCCccEEEech
Confidence 457777777776 4899999999999999999995 67999999999999 99999999999984 699999999
Q ss_pred ccccCCCCCCcceEEEcCCCCChhhhhhhc-----cCcceEEEEecCcccHHHHHHHHHHHhhcC
Q psy15269 1144 SDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGHKEAIAFYDPVADIGLASSLIKLLEYSN 1203 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~ 1203 (1858)
+++||+|++.+++|||||+|++|+.|+||| .|++..+..+.+..+....+.|.+.+....
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 999999999999999999999999999999 333333433333344445666666666644
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.6e-14 Score=187.98 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=103.6
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.+.+...+|...+++.+. ..++||||+|++.++.+++.|.+.|+++..|||++. +++|..+...|+.| +|
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~---~~e~~~i~~ag~~g--~V 479 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA---AKEAQIIAEAGQKG--AV 479 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc---HHHHHHHHHcCCCC--eE
Confidence 345677889888888773 378999999999999999999999999999999998 88888888888776 79
Q ss_pred EEeccccccCCCC---CCcc-----eEEEcCCCCChhhhhhhc---cC---cceEEEEecC
Q psy15269 1139 VIMTLSDFIGNDF---TNVE-----QVIIYNLPLSINHYVFQI---AG---HKEAIAFYDP 1185 (1858)
Q Consensus 1139 LVATDVAARGLDI---p~V~-----~VINyDlP~~~e~YIHRI---ag---~~~aitfvt~ 1185 (1858)
+||||+|+||+|| ++|. ||||||+|.+.+.|+||+ |+ .|.+++|++.
T Consensus 480 lIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 480 TVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred EEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 9999999999999 7999 999999999999999999 22 2388999987
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.60 E-value=9.5e-16 Score=186.69 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=105.1
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccE-EEEEEEC-----ChhhHHHHHHHhhc-CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLV-KQYLIRT-----PKSQKIVNLLSFLE-GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I-~Q~~~~v-----~~~~Kl~~Ll~lL~-~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||+|+.++++++.+...+............+ .|.+..+ .+.+.+..+++.+. ..++||||+|++.|+.+++.
T Consensus 162 SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~ 241 (358)
T TIGR01587 162 SATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQ 241 (358)
T ss_pred ecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHH
Confidence 99999999888877655433222221111112 3333222 22333444444443 48999999999999999999
Q ss_pred HhhCCC--eEEEEecCCCCccHHHHHH----HHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1102 VQDSNM--MTIPMSNNGTSWSHVECLE----LLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1102 L~~~g~--~~~~LHG~ms~~~Q~eR~~----~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|++.+. .+..+||+++ +.+|.+ ++++|++|+.+||||||+++||+||+ +++||+|+.| +++|+||+
T Consensus 242 L~~~~~~~~~~~~h~~~~---~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~ 313 (358)
T TIGR01587 242 LKENAPEEEIMLLHSRFT---EKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRL 313 (358)
T ss_pred HHhhcCCCeEEEEECCCC---HHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHh
Confidence 998776 5999999999 888876 48999999999999999999999995 8999999888 78999999
No 73
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.56 E-value=3.8e-14 Score=178.15 Aligned_cols=225 Identities=17% Similarity=0.196 Sum_probs=159.7
Q ss_pred cccccccccccccCcc--ccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhcc
Q psy15269 930 VRDMRHVSNNILMSPN--YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVS 1005 (1858)
Q Consensus 930 v~~l~~t~~~ll~~~~--~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~ 1005 (1858)
.+.+-..|-++....- ........-+++||| =.+.+-| |.|+ |..+-..++.+-.
T Consensus 108 ~klLyisPErl~~~~f~~~L~~~~i~l~vIDEA----------HCiSqWGhdFRP~--------Y~~lg~l~~~~~~--- 166 (590)
T COG0514 108 LKLLYISPERLMSPRFLELLKRLPISLVAIDEA----------HCISQWGHDFRPD--------YRRLGRLRAGLPN--- 166 (590)
T ss_pred eeEEEECchhhcChHHHHHHHhCCCceEEechH----------HHHhhcCCccCHh--------HHHHHHHHhhCCC---
Confidence 3445555655554211 111233344556665 4488988 9999 7778777777632
Q ss_pred CCCCcccccccccccccccccCCCCCCcHhHHHHHHHhc--CCCEEEEEccCCcccEEEEEEECC-hhhHHHHHHHhhcC
Q psy15269 1006 NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEV--EDPIMKLVKPSSVHLVKQYLIRTP-KSQKIVNLLSFLEG 1082 (1858)
Q Consensus 1006 ~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L--~dpv~I~v~~~~~~~I~Q~~~~v~-~~~Kl~~Ll~lL~~ 1082 (1858)
.......||-++.+++-+...| ++|. +-+..-..++|.-.+.... ..+++..+......
T Consensus 167 -----------------~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~ 228 (590)
T COG0514 167 -----------------PPVLALTATATPRVRDDIREQLGLQDAN-IFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQ 228 (590)
T ss_pred -----------------CCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEecCCCchhhhhhhhcccHHHHHHHHHhhccc
Confidence 1111236888888887666655 4442 3333344445433332222 34444433321222
Q ss_pred --CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1083 --KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 --~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
...||||.||+.|+.++++|++.|+++..+||+|+ ..+|..+.++|..+++.|+|||-+...|||.|||.+||||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~---~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLS---NEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCC---HHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 56899999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhc--cCcc----eEEEEecCcccHHHHHHHHH
Q psy15269 1161 NLPLSINHYVFQI--AGHK----EAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1161 DlP~~~e~YIHRI--ag~~----~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
|+|.++|+|++-+ ||+. .|+.|+.+ .|....+.+.+
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~-~D~~~~~~~i~ 347 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSP-EDIRWQRYLIE 347 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeecc-ccHHHHHHHHH
Confidence 9999999999988 3332 79999999 77666655554
No 74
>PRK02362 ski2-like helicase; Provisional
Probab=99.54 E-value=6.4e-14 Score=185.84 Aligned_cols=257 Identities=15% Similarity=0.066 Sum_probs=170.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|.|+||.++-..+..+.. .. ++-.++.|+.....+ .-...+++++||.++.. .....
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~g-----------~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~ 133 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-LG-----------VRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAP 133 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-CC-----------CEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChh
Confidence 367899999999999877664321 11 133456676543221 11235688999987753 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH---HHHHhhhccCCCCccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF---RAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~---RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
......-+|+||++. +.+.++.+. ++.++..+... .|.+.+
T Consensus 134 ~l~~v~lvViDE~H~----------l~d~~rg~~----le~il~rl~~~~~~~qii~l---------------------- 177 (737)
T PRK02362 134 WLDDITCVVVDEVHL----------IDSANRGPT----LEVTLAKLRRLNPDLQVVAL---------------------- 177 (737)
T ss_pred hhhhcCEEEEECccc----------cCCCcchHH----HHHHHHHHHhcCCCCcEEEE----------------------
Confidence 234566777888866 777777777 77777666432 233444
Q ss_pred ccCCCCCCcHhHHHHHHHhcC-------CCEEEEE--ccCCccc--EEEEEEECC-hhhHHHHHHHhhc-CCcEEEEecC
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVE-------DPIMKLV--KPSSVHL--VKQYLIRTP-KSQKIVNLLSFLE-GKRSLIFVKT 1091 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~-------dpv~I~v--~~~~~~~--I~Q~~~~v~-~~~Kl~~Ll~lL~-~~k~IIFvnT 1091 (1858)
|||+|. .+++++..-. .|+.+.. ....... -.+..+..+ +..+...+.+.+. ..++||||+|
T Consensus 178 ----SATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s 252 (737)
T PRK02362 178 ----SATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSS 252 (737)
T ss_pred ----cccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeC
Confidence 888864 3344432211 1222211 1000000 011122211 2344555666554 4899999999
Q ss_pred hHHHHHHHHHHhhCC------------------------------------CeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1092 YRDASRIISAVQDSN------------------------------------MMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1092 k~~ad~L~~~L~~~g------------------------------------~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
++.|+.++..|.+.. ..+..+||+|+ +.+|..+.+.||+|+
T Consensus 253 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~---~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 253 RRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLS---REHRELVEDAFRDRL 329 (737)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCC---HHHHHHHHHHHHcCC
Confidence 999999988886431 35788999999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEE----cC-----CCCChhhhhhhc--cCc------ceEEEEecC
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVII----YN-----LPLSINHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VIN----yD-----lP~~~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
++|||||+.+++|+|+|.+.+||+ || .|.+..+|+||+ ||+ |.++.++..
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 999999999999999999999998 88 789999999999 433 357777765
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.51 E-value=8.9e-13 Score=169.56 Aligned_cols=115 Identities=11% Similarity=-0.014 Sum_probs=102.0
Q ss_pred ECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1066 RTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1066 ~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
+..+.+|...+...+. +.++||||+|+..++.++..|.+.|+++..|||+ |.+|+..+.+|+.+...|+|
T Consensus 384 ~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-----q~~rEa~ii~~ag~~g~VtI 458 (745)
T TIGR00963 384 YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-----NHEREAEIIAQAGRKGAVTI 458 (745)
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-----hHHHHHHHHHhcCCCceEEE
Confidence 4456778877777552 3789999999999999999999999999999997 67999999999999999999
Q ss_pred eccccccCCCCCC-------cceEEEcCCCCChhhhhhhc---cCcc---eEEEEecC
Q psy15269 1141 MTLSDFIGNDFTN-------VEQVIIYNLPLSINHYVFQI---AGHK---EAIAFYDP 1185 (1858)
Q Consensus 1141 ATDVAARGLDIp~-------V~~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~ 1185 (1858)
|||+|+||+||+. .-|||||++|.+...|.||+ |+.| .+..|++.
T Consensus 459 ATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~ 516 (745)
T TIGR00963 459 ATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSL 516 (745)
T ss_pred EeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEec
Confidence 9999999999999 55999999999999999999 3333 78889887
No 76
>PRK00254 ski2-like helicase; Provisional
Probab=99.50 E-value=1.3e-13 Score=182.48 Aligned_cols=256 Identities=14% Similarity=0.028 Sum_probs=168.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.+|-|+|+||.++=..+..+. ... ++-..+.|+..... +.....++++.||.++.. .....
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~-~~g-----------~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~~~~ 134 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWE-KLG-----------LRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRHGSS 134 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHh-hcC-----------CEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhCCch
Confidence 35788899999999876655321 111 12344566654322 122346789999988754 22112
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
......-+|+||++. +.+.++.+. ++.|+..+++..|.+.+
T Consensus 135 ~l~~l~lvViDE~H~----------l~~~~rg~~----le~il~~l~~~~qiI~l------------------------- 175 (720)
T PRK00254 135 WIKDVKLVVADEIHL----------IGSYDRGAT----LEMILTHMLGRAQILGL------------------------- 175 (720)
T ss_pred hhhcCCEEEEcCcCc----------cCCccchHH----HHHHHHhcCcCCcEEEE-------------------------
Confidence 234556677888876 766667677 88888888777777777
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEE-EccCCc--ccEEEEEEECCh--hh-----HHHHHHHhhc-CCcEEEEecChHHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKL-VKPSSV--HLVKQYLIRTPK--SQ-----KIVNLLSFLE-GKRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~-v~~~~~--~~I~Q~~~~v~~--~~-----Kl~~Ll~lL~-~~k~IIFvnTk~~ad 1096 (1858)
|||++. .+++++ ++..+.... ..+... ..+.+.+...+. .+ ....+.+.++ +.++||||+|++.|+
T Consensus 176 -SATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~ 252 (720)
T PRK00254 176 -SATVGN-AEELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAE 252 (720)
T ss_pred -EccCCC-HHHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHH
Confidence 999875 466665 343322111 000000 001112221111 11 1233444454 378999999999998
Q ss_pred HHHHHHhhC---------------------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1097 RIISAVQDS---------------------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1097 ~L~~~L~~~---------------------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.++..|.+. ...+..+||+|+ +.+|..+.+.|++|.++|||||+
T Consensus 253 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~---~~eR~~ve~~F~~G~i~VLvaT~ 329 (720)
T PRK00254 253 KEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG---RTERVLIEDAFREGLIKVITATP 329 (720)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC---HHHHHHHHHHHHCCCCeEEEeCc
Confidence 887666321 234889999999 99999999999999999999999
Q ss_pred ccccCCCCCCcceEE-------EcCCCCC-hhhhhhhc--cCc------ceEEEEecC
Q psy15269 1144 SDFIGNDFTNVEQVI-------IYNLPLS-INHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1144 VAARGLDIp~V~~VI-------NyDlP~~-~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
.+++|+|+|.+++|| +|+.|.. ..+|+||+ ||+ +.++.+++.
T Consensus 330 tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 330 TLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 999999999999999 4777764 46899999 433 368888775
No 77
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.49 E-value=3.1e-13 Score=176.37 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=117.3
Q ss_pred HHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc
Q psy15269 1072 KIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF 1146 (1858)
Q Consensus 1072 Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA 1146 (1858)
++..|+..|+ +.++||||+|++.++.+++.|.+.|+++..+||+++ +.+|..++++|+.|++.|||||++++
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~---~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDID---TLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCC---HHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 4445555443 378999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCCCcceEEEcCC-----CCChhhhhhhccC-----cceEEEEecCc--------ccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1147 IGNDFTNVEQVIIYNL-----PLSINHYVFQIAG-----HKEAIAFYDPV--------ADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1147 RGLDIp~V~~VINyDl-----P~~~e~YIHRIag-----~~~aitfvt~~--------~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
||+|+|++++||++|. |.+.++|+||+|+ .|.+++|++.. .|...+++|+..++.+...+|.
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999999999999995 7899999999932 23789999842 5678888899999998888885
No 78
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.46 E-value=3.4e-13 Score=171.65 Aligned_cols=238 Identities=12% Similarity=0.051 Sum_probs=158.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.++++-|+|+|+.|+-..+..+...+.. ....+.||.... ...+++++|+.++..... ...
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~~~-----------~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~-~~~ 220 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFPRE-----------AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK-EWF 220 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccccc-----------ceeEEecCcccC-------CCCCEEEeeHHHHhhchh-hhc
Confidence 4689999999999998887665432211 122344554321 234578899988875321 122
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDS 1029 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eS 1029 (1858)
.....+|+||+.+ +. .++ +..|++.+++.|+++.+ |
T Consensus 221 ~~~~~iIvDEaH~----------~~----~~~----~~~il~~~~~~~~~lGL--------------------------T 256 (501)
T PHA02558 221 DQFGMVIVDECHL----------FT----GKS----LTSIITKLDNCKFKFGL--------------------------T 256 (501)
T ss_pred cccCEEEEEchhc----------cc----chh----HHHHHHhhhccceEEEE--------------------------e
Confidence 3456677999987 22 234 88888888888888888 6
Q ss_pred CCCcHhHH-------------------HHHHH-hcCCCEEEEEccC--C--cccE-----EEEE-EECChhhHHHHHHHh
Q psy15269 1030 LFSWGDIE-------------------EESNI-EVEDPIMKLVKPS--S--VHLV-----KQYL-IRTPKSQKIVNLLSF 1079 (1858)
Q Consensus 1030 AT~p~~I~-------------------~la~~-~L~dpv~I~v~~~--~--~~~I-----~Q~~-~~v~~~~Kl~~Ll~l 1079 (1858)
||+++... ++.+. ++.++....+... . ...+ .+.+ ..+....|...+.++
T Consensus 257 ATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~ 336 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANL 336 (501)
T ss_pred ccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHH
Confidence 66653221 11111 1112211111100 0 0000 0000 011122222222222
Q ss_pred ---hc--CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec-cccccCCCCCC
Q psy15269 1080 ---LE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT-LSDFIGNDFTN 1153 (1858)
Q Consensus 1080 ---L~--~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT-DVAARGLDIp~ 1153 (1858)
+. +.+++|||+..+.++.|++.|++.|+++..+||+++ +.+|.++++.|++|+..||||| ++++||+|+|+
T Consensus 337 ~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~---~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ 413 (501)
T PHA02558 337 ALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVD---TEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKN 413 (501)
T ss_pred HHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCC---HHHHHHHHHHHhCCCCeEEEEEcceecccccccc
Confidence 22 367888888888999999999999999999999999 9999999999999999999999 99999999999
Q ss_pred cceEEEcCCCCChhhhhhhc
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI 1173 (1858)
+++||++++|.+...|+||+
T Consensus 414 ld~vIl~~p~~s~~~~~Qri 433 (501)
T PHA02558 414 LHHVIFAHPSKSKIIVLQSI 433 (501)
T ss_pred ccEEEEecCCcchhhhhhhh
Confidence 99999999999999999999
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.44 E-value=5.1e-13 Score=163.31 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=99.9
Q ss_pred CCCCcHhHHHHHHHh--cCCCEEEEEcc-----------CCc---------ccEEEEEEECChhhH---HHHHHHhh---
Q psy15269 1029 SLFSWGDIEEESNIE--VEDPIMKLVKP-----------SSV---------HLVKQYLIRTPKSQK---IVNLLSFL--- 1080 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~--L~dpv~I~v~~-----------~~~---------~~I~Q~~~~v~~~~K---l~~Ll~lL--- 1080 (1858)
|||+|+.+.+..+.. +.+|+.+.-+. ... ..+++.+.. ....| +..+.+.+
T Consensus 188 SAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~ 266 (357)
T TIGR03158 188 SATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIER 266 (357)
T ss_pred ecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHH
Confidence 999999877776654 55554332221 010 246666655 32222 22333333
Q ss_pred ----cCCcEEEEecChHHHHHHHHHHhhCC--CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1081 ----EGKRSLIFVKTYRDASRIISAVQDSN--MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1081 ----~~~k~IIFvnTk~~ad~L~~~L~~~g--~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
...++||||||++.++.+++.|++.+ +.+..+||.++ |.+|.++ ++.+||||||+++|||||+.+
T Consensus 267 ~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~---~~~R~~~------~~~~iLVaTdv~~rGiDi~~~ 337 (357)
T TIGR03158 267 FRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP---KKDRERA------MQFDILLGTSTVDVGVDFKRD 337 (357)
T ss_pred HhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC---HHHHHHh------ccCCEEEEecHHhcccCCCCc
Confidence 23689999999999999999999864 67899999999 9888654 478999999999999999987
Q ss_pred ceEEEcCCCCChhhhhhhccCcc
Q psy15269 1155 EQVIIYNLPLSINHYVFQIAGHK 1177 (1858)
Q Consensus 1155 ~~VINyDlP~~~e~YIHRIag~~ 1177 (1858)
+|| ++ |.+.++|+||+|+.|
T Consensus 338 -~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 338 -WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -eEE-EC-CCCHHHHhhhcccCC
Confidence 666 66 999999999997754
No 80
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.43 E-value=1.2e-12 Score=170.05 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=107.1
Q ss_pred hhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc
Q psy15269 1070 SQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV 1144 (1858)
..++..|+..++ +.++||||+|++.++.+++.|.+.|+++..+||+++ +.+|.+++++|+.|++.|||||++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~---~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEID---TLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCC---HHHHHHHHHHHhcCCceEEEEcCh
Confidence 345555555543 378999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccCCCCCCcceEEEcC-----CCCChhhhhhhccC-----cceEEEEecCcccHHHHHHHHHH
Q psy15269 1145 DFIGNDFTNVEQVIIYN-----LPLSINHYVFQIAG-----HKEAIAFYDPVADIGLASSLIKL 1198 (1858)
Q Consensus 1145 AARGLDIp~V~~VINyD-----lP~~~e~YIHRIag-----~~~aitfvt~~~e~~~l~~Ie~~ 1198 (1858)
++||+|+|+|++||++| .|.+.++||||+|+ .|.++.|++. .+..+.+.|...
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~-~~~~~~~ai~~~ 564 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADK-ITDSMQKAIEET 564 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcC-CCHHHHHHHHHH
Confidence 99999999999999999 89999999999922 2378999886 555555555544
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.41 E-value=6.7e-13 Score=179.39 Aligned_cols=211 Identities=12% Similarity=0.016 Sum_probs=147.1
Q ss_pred hhhcccccccccccccCcc-ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhcc
Q psy15269 927 DKFVRDMRHVSNNILMSPN-YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVS 1005 (1858)
Q Consensus 927 ~~~v~~l~~t~~~ll~~~~-~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~ 1005 (1858)
++..++...|+|+++.... -........+|+|||++ ++++++|.-. .+++|+..-+ ..+.+++
T Consensus 154 s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHE---------RsL~~D~LL~---lLk~il~~rp-dLKlIlm--- 217 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHE---------RSLNIDFLLG---YLKQLLPRRP-DLKIIIT--- 217 (1283)
T ss_pred CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcch---------hhccchhHHH---HHHHHHhhCC-CCeEEEE---
Confidence 3456688999999995211 12345566778999984 2666665433 1333333222 2344556
Q ss_pred CCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh------hhHHHHHHHh
Q psy15269 1006 NAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK------SQKIVNLLSF 1079 (1858)
Q Consensus 1006 ~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~------~~Kl~~Ll~l 1079 (1858)
|||++. +++++.|.+.|+ |.+.... ..++.+|..... .++...++..
T Consensus 218 -----------------------SATld~--~~fa~~F~~apv-I~V~Gr~-~PVev~Y~~~~~~~~~~~~~~~~~i~~~ 270 (1283)
T TIGR01967 218 -----------------------SATIDP--ERFSRHFNNAPI-IEVSGRT-YPVEVRYRPLVEEQEDDDLDQLEAILDA 270 (1283)
T ss_pred -----------------------eCCcCH--HHHHHHhcCCCE-EEECCCc-ccceeEEecccccccchhhhHHHHHHHH
Confidence 999974 678888777775 5554322 235556654432 2344444443
Q ss_pred h----c--CCcEEEEecChHHHHHHHHHHhhCC---CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCC
Q psy15269 1080 L----E--GKRSLIFVKTYRDASRIISAVQDSN---MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGND 1150 (1858)
Q Consensus 1080 L----~--~~k~IIFvnTk~~ad~L~~~L~~~g---~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLD 1150 (1858)
+ . .+++|||+++++.++.+++.|++.+ +.+..+||+|+ +++|.++++.+ +..+|+||||+|++|||
T Consensus 271 I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls---~~eQ~~vf~~~--~~rkIVLATNIAEtSLT 345 (1283)
T TIGR01967 271 VDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLS---NKEQQRVFQPH--SGRRIVLATNVAETSLT 345 (1283)
T ss_pred HHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCC---HHHHHHHhCCC--CCceEEEeccHHHhccc
Confidence 3 2 2789999999999999999999764 45889999999 99999986654 24689999999999999
Q ss_pred CCCcceEEEcCCCC------------------Chhhhhhhc--cC---cceEEEEecC
Q psy15269 1151 FTNVEQVIIYNLPL------------------SINHYVFQI--AG---HKEAIAFYDP 1185 (1858)
Q Consensus 1151 Ip~V~~VINyDlP~------------------~~e~YIHRI--ag---~~~aitfvt~ 1185 (1858)
||+|++|||+++|. +-.+|+||. +| .|.++.|++.
T Consensus 346 IpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte 403 (1283)
T TIGR01967 346 VPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSE 403 (1283)
T ss_pred cCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCH
Confidence 99999999999664 236999999 22 3389999986
No 82
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.37 E-value=1.4e-11 Score=159.64 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=102.0
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.+++...+|...+++.+. ..++||||+|++.++.+++.|.+.|+++..|||++. |++|..+..+|+.| .|
T Consensus 401 ~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~---~~E~~ii~~ag~~g--~V 475 (762)
T TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA---AKEAQIIAEAGQKG--AV 475 (762)
T ss_pred eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh---HHHHHHHHHcCCCC--eE
Confidence 456678889888887663 378999999999999999999999999999999998 99998888777776 79
Q ss_pred EEeccccccCCCCC---------CcceEEEcCCCCChhhhhhhc---cCc---ceEEEEecC
Q psy15269 1139 VIMTLSDFIGNDFT---------NVEQVIIYNLPLSINHYVFQI---AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1139 LVATDVAARGLDIp---------~V~~VINyDlP~~~e~YIHRI---ag~---~~aitfvt~ 1185 (1858)
+||||+|+||+||+ ++.+||||++|....+ +||+ |+. |.+++|++.
T Consensus 476 lIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 476 TVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred EEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99999999999999 9999999999999877 9999 322 388999987
No 83
>PRK01172 ski2-like helicase; Provisional
Probab=99.36 E-value=4.5e-12 Score=167.04 Aligned_cols=266 Identities=14% Similarity=0.066 Sum_probs=161.7
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYES 948 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~ 948 (1858)
+.++-|.|+||.++-+.+..+. .... +-....|+...... .-+..++++.||.++.. ......
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~-~~g~-----------~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~ 132 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLR-SLGM-----------RVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYI 132 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHh-hcCC-----------eEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhH
Confidence 4567799999999877765431 1111 22334565543222 22456788999987653 221222
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH---HHHHhhhccCCCCcccccccccccccccc
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF---RAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~---RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.....-+|+||+++ +.+.++.+. ++.++..+... .|.+.+
T Consensus 133 l~~v~lvViDEaH~----------l~d~~rg~~----le~ll~~~~~~~~~~riI~l----------------------- 175 (674)
T PRK01172 133 INDVGLIVADEIHI----------IGDEDRGPT----LETVLSSARYVNPDARILAL----------------------- 175 (674)
T ss_pred HhhcCEEEEecchh----------ccCCCccHH----HHHHHHHHHhcCcCCcEEEE-----------------------
Confidence 34556677888877 777677777 77776655432 233444
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEE-------EEEEECChhh--HHHH-HHHhhc-CCcEEEEecChHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVK-------QYLIRTPKSQ--KIVN-LLSFLE-GKRSLIFVKTYRD 1094 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~-------Q~~~~v~~~~--Kl~~-Ll~lL~-~~k~IIFvnTk~~ 1094 (1858)
|||++. .+++++. +..+... .... ...++ +.+....... .+.. +.+.+. .+++||||+|++.
T Consensus 176 ---SATl~n-~~~la~w-l~~~~~~-~~~r-~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~ 248 (674)
T PRK01172 176 ---SATVSN-ANELAQW-LNASLIK-SNFR-PVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKN 248 (674)
T ss_pred ---eCccCC-HHHHHHH-hCCCccC-CCCC-CCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHH
Confidence 888864 4566653 3211110 0000 00111 1111111111 1222 222233 4789999999999
Q ss_pred HHHHHHHHhhC-----C--------------------CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCC
Q psy15269 1095 ASRIISAVQDS-----N--------------------MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149 (1858)
Q Consensus 1095 ad~L~~~L~~~-----g--------------------~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGL 1149 (1858)
++.++..|.+. . ..+..+||+|+ +++|..+.+.|++|.++|||||+++++|+
T Consensus 249 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~---~~eR~~ve~~f~~g~i~VLvaT~~la~Gv 325 (674)
T PRK01172 249 AEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS---NEQRRFIEEMFRNRYIKVIVATPTLAAGV 325 (674)
T ss_pred HHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC---HHHHHHHHHHHHcCCCeEEEecchhhccC
Confidence 99999988653 1 23677899999 99999999999999999999999999999
Q ss_pred CCCCcceEEEcCCC---------CChhhhhhhc--cCc------ceEEEEecCcccHHHHHHHHHHHhhc
Q psy15269 1150 DFTNVEQVIIYNLP---------LSINHYVFQI--AGH------KEAIAFYDPVADIGLASSLIKLLEYS 1202 (1858)
Q Consensus 1150 DIp~V~~VINyDlP---------~~~e~YIHRI--ag~------~~aitfvt~~~e~~~l~~Ie~~l~~~ 1202 (1858)
|+|+. .||.+|.| .++.+|.||+ ||+ +.++.++...++. ..+++++...
T Consensus 326 nipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~---~~~~~~l~~~ 391 (674)
T PRK01172 326 NLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY---DAAKKYLSGE 391 (674)
T ss_pred CCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccH---HHHHHHHcCC
Confidence 99986 56666654 4667899999 332 1356665442222 3355555443
No 84
>PRK13766 Hef nuclease; Provisional
Probab=99.28 E-value=1.9e-11 Score=163.68 Aligned_cols=100 Identities=17% Similarity=0.277 Sum_probs=92.3
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecC--------CCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNN--------GTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~--------ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
.++||||++++.|+.|++.|...|+++..+||. |+ |.+|.+++++|++|+.++|||||++++|+|+|++
T Consensus 366 ~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~---~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 366 SRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMS---QKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCC---HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 899999999999999999999999999999997 76 9999999999999999999999999999999999
Q ss_pred ceEEEcCCCCChhhhhhhc---cC--cceEEEEecC
Q psy15269 1155 EQVIIYNLPLSINHYVFQI---AG--HKEAIAFYDP 1185 (1858)
Q Consensus 1155 ~~VINyDlP~~~e~YIHRI---ag--~~~aitfvt~ 1185 (1858)
++|||||+|.++..|+||+ ++ .+.++.++..
T Consensus 443 ~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred CEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 9999999999999999999 22 2367777764
No 85
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.2e-11 Score=146.44 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=98.3
Q ss_pred EEEECChhhHHHHHHH-hhc---CCcEEEEecChHHHHHHHHHHhhCCCeEE-EEec--------CCCCccHHHHHHHHH
Q psy15269 1063 YLIRTPKSQKIVNLLS-FLE---GKRSLIFVKTYRDASRIISAVQDSNMMTI-PMSN--------NGTSWSHVECLELLN 1129 (1858)
Q Consensus 1063 ~~~~v~~~~Kl~~Ll~-lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~-~LHG--------~ms~~~Q~eR~~~L~ 1129 (1858)
..+.-||.+++..++. .++ +.|+|||++.+.+++.+...|.+.|..+. .+-| +|+ |.++.++++
T Consensus 343 ~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMs---QkeQ~eiI~ 419 (542)
T COG1111 343 SGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMS---QKEQKEIID 419 (542)
T ss_pred ccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccC---HHHHHHHHH
Confidence 3334455555555443 232 27999999999999999999999988875 5544 355 999999999
Q ss_pred HHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccCc-----ceEEEEecC
Q psy15269 1130 LFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGH-----KEAIAFYDP 1185 (1858)
Q Consensus 1130 ~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag~-----~~aitfvt~ 1185 (1858)
+||+|+++|||||.|+..|||||+|++||-||.-.++.-+|||.|++ |..+.+++.
T Consensus 420 ~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~ 480 (542)
T COG1111 420 QFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTE 480 (542)
T ss_pred HHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999332 267777776
No 86
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.22 E-value=2.2e-11 Score=116.22 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=70.0
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag 1175 (1858)
++|++.|+++..+||+++ +.+|..++++|++++..|||||+++++|+|+|++++||+||+|+++..|+||+++
T Consensus 1 ~~L~~~~~~~~~i~~~~~---~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMS---QKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHHHHTTSSEEEESTTSH---HHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTT
T ss_pred CChHHCCCcEEEEECCCC---HHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhc
Confidence 368889999999999999 9999999999999999999999999999999999999999999999999999854
No 87
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=2.6e-10 Score=148.39 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=103.1
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++..+.+|...+.+.+. +.++||||+|+..++.++..|.+.|+++..|||++. ++++..+.+.|+.|. |
T Consensus 417 ~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~---~~Ea~ii~~ag~~g~--V 491 (796)
T PRK12906 417 LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNH---AKEAEIIMNAGQRGA--V 491 (796)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcH---HHHHHHHHhcCCCce--E
Confidence 345677888888888773 378999999999999999999999999999999997 888888888888776 9
Q ss_pred EEeccccccCCCC---CCcc-----eEEEcCCCCChhhhhhhc---cCcc---eEEEEecCc
Q psy15269 1139 VIMTLSDFIGNDF---TNVE-----QVIIYNLPLSINHYVFQI---AGHK---EAIAFYDPV 1186 (1858)
Q Consensus 1139 LVATDVAARGLDI---p~V~-----~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~~ 1186 (1858)
+||||+|+||+|| ++|. ||||+++|.+...|.||+ |+.| .+..|++..
T Consensus 492 tIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 492 TIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9999999999999 5999 999999999999999998 3333 788888873
No 88
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=2.7e-10 Score=148.76 Aligned_cols=134 Identities=11% Similarity=0.066 Sum_probs=110.0
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++....+|...++..+. +.++||||+|++.++.|++.|++.|+++..||+ . |.+|+..+.+|+.+...|
T Consensus 575 ~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--k---q~~REa~Iia~AG~~g~V 649 (1025)
T PRK12900 575 LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--K---QHDREAEIVAEAGQKGAV 649 (1025)
T ss_pred eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--C---HHHhHHHHHHhcCCCCeE
Confidence 345677889999988773 378999999999999999999999999999997 4 899999999999999999
Q ss_pred EEeccccccCCCCC---Ccc-----eEEEcCCCCChhhhhhhc---cCcc---eEEEEecCcccHH-HH--HHHHHHHhh
Q psy15269 1139 VIMTLSDFIGNDFT---NVE-----QVIIYNLPLSINHYVFQI---AGHK---EAIAFYDPVADIG-LA--SSLIKLLEY 1201 (1858)
Q Consensus 1139 LVATDVAARGLDIp---~V~-----~VINyDlP~~~e~YIHRI---ag~~---~aitfvt~~~e~~-~l--~~Ie~~l~~ 1201 (1858)
+||||+|+||+||+ +|. |||+++.|.+...|+||+ |+.| .+++|++..++.. .+ ..|.+++..
T Consensus 650 tIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~ 729 (1025)
T PRK12900 650 TIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDR 729 (1025)
T ss_pred EEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHH
Confidence 99999999999999 564 449999999999999999 3333 8999998733321 11 145555554
Q ss_pred c
Q psy15269 1202 S 1202 (1858)
Q Consensus 1202 ~ 1202 (1858)
.
T Consensus 730 ~ 730 (1025)
T PRK12900 730 L 730 (1025)
T ss_pred c
Confidence 3
No 89
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.18 E-value=2.4e-10 Score=118.06 Aligned_cols=111 Identities=27% Similarity=0.445 Sum_probs=97.9
Q ss_pred EEEEEEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
|.+.+...+ ..|...+..++. ..++||||++++.++.+.+.|++.+..+..+||+++ ..+|..++++|+++
T Consensus 2 i~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~ 77 (131)
T cd00079 2 IKQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGS---QEEREEVLKDFREG 77 (131)
T ss_pred cEEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCC---HHHHHHHHHHHHcC
Confidence 455565554 255555555554 378999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA 1174 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa 1174 (1858)
...||++|.++++|+|+|++++||.++.|++..+|+|++|
T Consensus 78 ~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~G 117 (131)
T cd00079 78 EIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIG 117 (131)
T ss_pred CCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheeccc
Confidence 9999999999999999999999999999999999999983
No 90
>KOG0354|consensus
Probab=99.12 E-value=3.1e-10 Score=144.91 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=96.4
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhh---CCCeEEEEecCC-----CCccHHHHHHHHHHHhcC
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQD---SNMMTIPMSNNG-----TSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~---~g~~~~~LHG~m-----s~~~Q~eR~~~L~~Fr~G 1134 (1858)
..|+..|.+++. ..|+||||+||..|+.|..+|.+ .|+.+..+-|.- .+|+|.++.+++++||+|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 456666666553 27999999999999999999983 466777776631 124499999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc--Cc--ceEEEEecCcccH
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA--GH--KEAIAFYDPVADI 1189 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa--g~--~~aitfvt~~~e~ 1189 (1858)
+++|||||.||..||||++|++||-||.-.++...|+|.| ++ +..+.+.+. .+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t~-~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTTG-SEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEEEcc-hhH
Confidence 9999999999999999999999999999999999999993 32 266666663 443
No 91
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.11 E-value=3.7e-09 Score=138.07 Aligned_cols=282 Identities=17% Similarity=0.099 Sum_probs=184.8
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccc
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSL 912 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~ 912 (1858)
|...-+ .+.-|+|+|+.|-+.. ..-+++...+.-|.|=|+|+-=|=+.+..++..+-+.. .+
T Consensus 45 PTGsGK-TeAAfLpil~~l~~~~------~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v-----------~v 106 (814)
T COG1201 45 PTGSGK-TEAAFLPVINELLSLG------KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEV-----------AV 106 (814)
T ss_pred CCCCCh-HHHHHHHHHHHHHhcc------CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCcc-----------ce
Confidence 444444 3344555555554442 11125667778888889998888888888777444422 33
Q ss_pred cccccCCchhhhhhhhhccccccccccccc---C-ccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHH
Q psy15269 913 LSAGLEPSTAIIDIDKFVRDMRHVSNNILM---S-PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQ 988 (1858)
Q Consensus 913 ~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~-~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~ 988 (1858)
-.|=+.-...++++.+=.++++-||-.+-- + +-......+..+++||+-. +. ...+|-+-. =+|+.
T Consensus 107 RhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe----l~----~sKRG~~Ls--l~LeR 176 (814)
T COG1201 107 RHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA----LA----ESKRGVQLA--LSLER 176 (814)
T ss_pred ecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh----hh----ccccchhhh--hhHHH
Confidence 344455444555555567789999987762 2 3345566788899999966 21 122443322 12332
Q ss_pred HHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCC--CEEEE-EccCCcccEEEEEE
Q psy15269 989 IFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVED--PIMKL-VKPSSVHLVKQYLI 1065 (1858)
Q Consensus 989 Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~d--pv~I~-v~~~~~~~I~Q~~~ 1065 (1858)
.-+..+ .=|++=- |||.- +..++++....+ +..|. +..... .+..++
T Consensus 177 L~~l~~-~~qRIGL--------------------------SATV~-~~~~varfL~g~~~~~~Iv~~~~~k~--~~i~v~ 226 (814)
T COG1201 177 LRELAG-DFQRIGL--------------------------SATVG-PPEEVAKFLVGFGDPCEIVDVSAAKK--LEIKVI 226 (814)
T ss_pred HHhhCc-ccEEEee--------------------------hhccC-CHHHHHHHhcCCCCceEEEEcccCCc--ceEEEE
Confidence 222222 1122211 66654 334444444332 55543 322222 222222
Q ss_pred EC---------ChhhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCC-CeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1066 RT---------PKSQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSN-MMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1066 ~v---------~~~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g-~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
.. ........+.++++. ..++||+||+..++.++..|++.+ ..+..-||.++ .++|..+-++||+|
T Consensus 227 ~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlS---re~R~~vE~~lk~G 303 (814)
T COG1201 227 SPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLS---RELRLEVEERLKEG 303 (814)
T ss_pred ecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccccc---HHHHHHHHHHHhcC
Confidence 11 112345666667765 679999999999999999999976 88999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag 1175 (1858)
+.+++|||.-..-|||+.+|++||||.-|......+||||+
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGR 344 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGR 344 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccc
Confidence 99999999999999999999999999999999999999933
No 92
>KOG0351|consensus
Probab=99.08 E-value=9.5e-10 Score=145.97 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=140.6
Q ss_pred HHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHH--h
Q psy15269 968 VYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNI--E 1043 (1858)
Q Consensus 968 ~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~--~ 1043 (1858)
|+|--..+=| |.|+ |+.+...|++..- .+. .. -.||-+..|++-+-. .
T Consensus 392 DEAHCVSqWgHdFRp~--------Yk~l~~l~~~~~~----------------vP~--iA--LTATAT~~v~~DIi~~L~ 443 (941)
T KOG0351|consen 392 DEAHCVSQWGHDFRPS--------YKRLGLLRIRFPG----------------VPF--IA--LTATATERVREDVIRSLG 443 (941)
T ss_pred cHHHHhhhhcccccHH--------HHHHHHHHhhCCC----------------CCe--EE--eehhccHHHHHHHHHHhC
Confidence 4445567766 6666 8888877776532 111 11 145655666654333 3
Q ss_pred cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCc
Q psy15269 1044 VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSW 1119 (1858)
Q Consensus 1044 L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~ 1119 (1858)
+.+|.... ..-..+++...+..-...+....++..++. ..+||+|.+|+.|+.++..|+..|+.+..+|++|+
T Consensus 444 l~~~~~~~-~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~-- 520 (941)
T KOG0351|consen 444 LRNPELFK-SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLP-- 520 (941)
T ss_pred CCCcceec-ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCC--
Confidence 56776332 223444554444332212333344444432 78999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--cCc-c---eEEEEecCcccHHHHH
Q psy15269 1120 SHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AGH-K---EAIAFYDPVADIGLAS 1193 (1858)
Q Consensus 1120 ~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--ag~-~---~aitfvt~~~e~~~l~ 1193 (1858)
..+|..+.++|-.++++|.|||=+...|||.+||..||||.+|.+.|.|.+-+ ||+ | .++.|+.. .|...++
T Consensus 521 -~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~-~D~~~l~ 598 (941)
T KOG0351|consen 521 -PKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGY-ADISELR 598 (941)
T ss_pred -HHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecch-hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 333 2 78999998 5554444
Q ss_pred HH
Q psy15269 1194 SL 1195 (1858)
Q Consensus 1194 ~I 1195 (1858)
.+
T Consensus 599 ~l 600 (941)
T KOG0351|consen 599 RL 600 (941)
T ss_pred HH
Confidence 33
No 93
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=1.7e-09 Score=140.68 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=98.4
Q ss_pred hhhHHHHHHHhh-----cCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcEEEec
Q psy15269 1069 KSQKIVNLLSFL-----EGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSLVIMT 1142 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL-----~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~ILVAT 1142 (1858)
...|+..+..++ ...++||||++.+.++.+++.|. +..|||+++ +.+|.+++++|++| ++++||+|
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts---~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTS---QQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCC---HHHHHHHHHHHHhCCCccEEEEe
Confidence 345666544444 23799999999999999999873 456999999 99999999999975 88999999
Q ss_pred cccccCCCCCCcceEEEcCCCC-Chhhhhhhc-----cCcc-eE-------EEEecCc-ccHHHHHHHHHHHhh
Q psy15269 1143 LSDFIGNDFTNVEQVIIYNLPL-SINHYVFQI-----AGHK-EA-------IAFYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VINyDlP~-~~e~YIHRI-----ag~~-~a-------itfvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
+|+.+|||+|++++||+++.|. +...|+||+ .+.+ .+ ++|++++ .|..+..+=++++-.
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~ 623 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVD 623 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999984 999999998 1111 33 8899873 344555555555544
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.01 E-value=2.7e-09 Score=140.36 Aligned_cols=245 Identities=15% Similarity=0.107 Sum_probs=150.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh----hcccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK----FVRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~----~v~~l~~t~~~ll~~~~ 945 (1858)
.++++-||++|+.|+-..+...+ | . +..++.||+....+...+.+ ..++++.|++.+...
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f-g--~-----------~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p-- 255 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF-G--A-----------PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLP-- 255 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh-C--C-----------CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhccc--
Confidence 35899999999999988775432 1 1 34566778775555444433 267889998776532
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHH--HHHhHHHHHHHhhhccCCCCcccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQI--FSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQ 1023 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~I--l~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~ 1023 (1858)
..+..-+|+||++. +.+. .+.+..-. .++| ++......+.+++
T Consensus 256 ---~~~l~liVvDEeh~----~s~~---~~~~p~y~----~r~va~~ra~~~~~~~il~--------------------- 300 (679)
T PRK05580 256 ---FKNLGLIIVDEEHD----SSYK---QQEGPRYH----ARDLAVVRAKLENIPVVLG--------------------- 300 (679)
T ss_pred ---ccCCCEEEEECCCc----cccc---cCcCCCCc----HHHHHHHHhhccCCCEEEE---------------------
Confidence 23345678999866 2110 01121111 1222 2222233345566
Q ss_pred cccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECCh-----------hhHHHHHHHhhcC-CcEEEEe
Q psy15269 1024 HNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPK-----------SQKIVNLLSFLEG-KRSLIFV 1089 (1858)
Q Consensus 1024 ~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~-----------~~Kl~~Ll~lL~~-~k~IIFv 1089 (1858)
|||++.+....++.. ....+.+..... ....-.++...+ ..-+..+.+.++. +++|||+
T Consensus 301 -----SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~ 373 (679)
T PRK05580 301 -----SATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFL 373 (679)
T ss_pred -----cCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEE
Confidence 999886666555321 222222222110 001111111111 1112233333433 6899998
Q ss_pred cCh------------------------------------------------------------HHHHHHHHHHhhC--CC
Q psy15269 1090 KTY------------------------------------------------------------RDASRIISAVQDS--NM 1107 (1858)
Q Consensus 1090 nTk------------------------------------------------------------~~ad~L~~~L~~~--g~ 1107 (1858)
|++ ..++.+++.|++. +.
T Consensus 374 nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~ 453 (679)
T PRK05580 374 NRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEA 453 (679)
T ss_pred cCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCC
Confidence 862 2467888888885 88
Q ss_pred eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceE--EEcCCCCCh----------hhhhhhc
Q psy15269 1108 MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV--IIYNLPLSI----------NHYVFQI 1173 (1858)
Q Consensus 1108 ~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V--INyDlP~~~----------e~YIHRI 1173 (1858)
++..+|+++. ..+.+|++++++|++|+++|||+|++++||+|+|+|++| +|+|.+-+. ..|+|++
T Consensus 454 ~v~~~~~d~~-~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~ 530 (679)
T PRK05580 454 RILRIDRDTT-RRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVA 530 (679)
T ss_pred cEEEEecccc-ccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHH
Confidence 9999999997 124679999999999999999999999999999999999 566766544 5688888
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=1e-08 Score=134.22 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=76.0
Q ss_pred EEECChhhHHHHHHHhhcC-----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLEG-----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~~-----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++....+|...+...+.. .++||||+|+..++.+++.|.+.|+++..|||+ |.+|+..+.+|+.++.+|
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-----q~eREa~Iia~Ag~~g~V 481 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-----NHEREAEIIAQAGRPGAV 481 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-----hHHHHHHHHHhcCCCceE
Confidence 3445677888888887742 789999999999999999999999999999993 789999999999999999
Q ss_pred EEeccccccCCCCCC
Q psy15269 1139 VIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1139 LVATDVAARGLDIp~ 1153 (1858)
+||||+|+||+||+-
T Consensus 482 tIATNmAGRGtDI~L 496 (830)
T PRK12904 482 TIATNMAGRGTDIKL 496 (830)
T ss_pred EEecccccCCcCccC
Confidence 999999999999865
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.94 E-value=1e-08 Score=134.35 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=73.5
Q ss_pred ECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1066 RTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1066 ~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
+....+|...++..+. +..+||||+|+..++.++..|.+.|+++..||+++. |.+|..+.+.|+.| .|+|
T Consensus 423 ~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~---q~Ea~iia~Ag~~G--~VtI 497 (896)
T PRK13104 423 YLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFH---EKEAQIIAEAGRPG--AVTI 497 (896)
T ss_pred EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCC---hHHHHHHHhCCCCC--cEEE
Confidence 3456677777776653 278999999999999999999999999999999999 99999999999999 4999
Q ss_pred eccccccCCCCC
Q psy15269 1141 MTLSDFIGNDFT 1152 (1858)
Q Consensus 1141 ATDVAARGLDIp 1152 (1858)
|||+|+||+||.
T Consensus 498 ATNmAGRGtDI~ 509 (896)
T PRK13104 498 ATNMAGRGTDIV 509 (896)
T ss_pred eccCccCCccee
Confidence 999999999985
No 97
>KOG0941|consensus
Probab=98.90 E-value=1.3e-10 Score=147.07 Aligned_cols=290 Identities=23% Similarity=0.303 Sum_probs=173.4
Q ss_pred CCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCc--eEEeecCceEEEEEc-------
Q psy15269 319 LYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDV--GAVSCGESHTLVLSQ------- 389 (1858)
Q Consensus 319 l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I--~~IAcG~~HTlaLt~------- 389 (1858)
+.-++|.+++||++|+.+++..|++|+||.|.+||+|.+.......|..+..+.++ .+|+||.+|+++++.
T Consensus 11 l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~ 90 (850)
T KOG0941|consen 11 LNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTD 90 (850)
T ss_pred HhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcch
Confidence 44567999999999999999999999999999999999955444448888888874 789999998887765
Q ss_pred CCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCC
Q psy15269 390 DGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGL 469 (1858)
Q Consensus 390 dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l 469 (1858)
+|. ++.+|....||+|++...+ ...|..+..+
T Consensus 91 e~~-~fs~Ga~~~~q~~h~~~~~-----------------------------------------------~~~~~~v~e~ 122 (850)
T KOG0941|consen 91 EGK-VFSFGAGSTGQLGHSLTEN-----------------------------------------------EVLPLLVLEL 122 (850)
T ss_pred hcc-ccccCCccccccccccccc-----------------------------------------------ccccHHHHHH
Confidence 884 8888888888887643222 2235555556
Q ss_pred CCCCEEEEEEcCceEEEEEe-CCeEEEEeCCCCCCCCCCCCCCCcccCeeeec---CCCceEEEEEecCcceEEEeecCC
Q psy15269 470 SSHQIVDVSIGDSHVLALSQ-YNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG---LEDVCVRQICAGSLFSIAYTVPPS 545 (1858)
Q Consensus 470 ~~~~Iv~Ia~G~~HtlALt~-dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~---L~~~~I~~Ia~G~~hS~alt~~~~ 545 (1858)
.+..+.+|+||..|+++... -|++|.+|.+..| .+...... .+..... -.+..+..+.+|+++++.+.....
T Consensus 123 i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s-~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~ 198 (850)
T KOG0941|consen 123 IGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLS-GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGE 198 (850)
T ss_pred HhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccc-hhhhcccccHHHHHHHHHHhcCCCceEEEEeecc
Confidence 67789999999999998875 5999999999887 11111100 0100000 112235568899999999874211
Q ss_pred CCcEEeeccCcccccC-CcchhhHHH--HHHhhhccccCCCC--------CCccccch-hHHHHHHHHHhhhhhhhhhhh
Q psy15269 546 NSALSSAFTPLCVDVR-PHTFTLIRE--FLEQYSACFETGDY--------IPFCSKVT-HAQFILLLLRLLSSHLYLALI 613 (1858)
Q Consensus 546 dG~vy~WG~n~~gqLg-~~t~~~l~~--~l~~~~~~~~~~d~--------~p~~s~~~-~~~f~~~~l~l~s~~~~~~~~ 613 (1858)
+.+ |.+...++. ..++-.+.. -......+.+.+++ .-+++.+| +..|.. +..+.+
T Consensus 199 ~~~----~~~d~~n~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~llss~a~~~~s~l~---k~~~~~------ 265 (850)
T KOG0941|consen 199 NSQ----GDNDLSNLNPSDHYVDLIAERRVALLLKKLEKGDNTAILNAIELLLSSLACDNTSFLD---KSRDCN------ 265 (850)
T ss_pred ccc----ccchhhhcCCcccceechhhhhHHHHHhhcccchHHHHHHHHHHHhhhHhhccchhhh---hhhccc------
Confidence 111 111111111 112211100 00111111111111 22444444 222221 222222
Q ss_pred cCCcccccccchHHHHHHHHHHhcCCCcHHHHHH---HHHHHhccccccCCCHHHHHHHHHhhcC
Q psy15269 614 GARSSSVLGNETAALRHVLFKLVDMETSPEIETL---LTDCLAIGASLLLPPVVEQLDLLKTLLS 675 (1858)
Q Consensus 614 ~~~~~~~lg~~~~~l~~l~~~li~~~~~~~~~~~---~~~~L~~g~s~llp~~~Er~~~l~~ll~ 675 (1858)
.+++....|++.+.++..+..+.....-.+.+++ ++..|---||-- |+..|+++.+ .+||
T Consensus 266 ~~c~~~~~~ld~~~~~~~f~~l~~~~~~~~~~~l~~~~~~~L~~~~s~~-~~d~e~~~i~-l~l~ 328 (850)
T KOG0941|consen 266 VFCSFQIHGLDLNLARPAFLELTLPLFCKILSELLVAIQKRLIRLWSKY-PADQEALYIL-LLLP 328 (850)
T ss_pred cccceecccccHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhC-CcHHHHHHHH-HHcc
Confidence 2355667999999999998888764444444333 333344444433 5566665543 3444
No 98
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.89 E-value=4.2e-09 Score=99.78 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=72.3
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG 1175 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag 1175 (1858)
.+++.|++.++.+..+||+++ +.+|..+++.|++++..|||+|+++++|+|++++++||.+++|.+...|+||+++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLS---QEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCC---HHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 577888888999999999999 9999999999999999999999999999999999999999999999999999854
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=1.9e-08 Score=128.37 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHHhhC--CCeEEEEecCCCCccHHHH--HHHHHHHhcCCCcEEEeccccccCCCCCCcceE--EEcCCCCC---
Q psy15269 1095 ASRIISAVQDS--NMMTIPMSNNGTSWSHVEC--LELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV--IIYNLPLS--- 1165 (1858)
Q Consensus 1095 ad~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR--~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V--INyDlP~~--- 1165 (1858)
++.+.+.|++. +.++..+|++++ +.++ .+++++|++|+.+|||+|++++||+|+|+|++| +|+|..-.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~---~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTT---SRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccc---cCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 58888888875 889999999998 5555 899999999999999999999999999999998 58886433
Q ss_pred -------hhhhhhhc
Q psy15269 1166 -------INHYVFQI 1173 (1858)
Q Consensus 1166 -------~e~YIHRI 1173 (1858)
...|+|++
T Consensus 348 ~ra~E~~~~ll~q~~ 362 (505)
T TIGR00595 348 FRAAERGFQLLTQVA 362 (505)
T ss_pred cchHHHHHHHHHHHH
Confidence 35678877
No 100
>KOG0352|consensus
Probab=98.80 E-value=1.1e-08 Score=121.14 Aligned_cols=196 Identities=12% Similarity=0.171 Sum_probs=138.9
Q ss_pred hHHhhhhhhcC--CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHH--HHH
Q psy15269 967 LVYSYLIQQTA--LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEE--SNI 1042 (1858)
Q Consensus 967 ~~~A~lL~~mG--F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~l--a~~ 1042 (1858)
.|+|-...+-| |.|+ |=.|-..|..+-- ..+..-.||-..+|++- ++.
T Consensus 147 VDEAHCVSQWGHDFRPD--------YL~LG~LRS~~~~--------------------vpwvALTATA~~~VqEDi~~qL 198 (641)
T KOG0352|consen 147 VDEAHCVSQWGHDFRPD--------YLTLGSLRSVCPG--------------------VPWVALTATANAKVQEDIAFQL 198 (641)
T ss_pred echhhhHhhhccccCcc--------hhhhhhHHhhCCC--------------------CceEEeecccChhHHHHHHHHH
Confidence 33444577766 8888 7777788877632 11122246666676653 334
Q ss_pred hcCCCEEEEEccCCcccEEEEEEECC----hhhHHHHHHHhh----cC------------CcEEEEecChHHHHHHHHHH
Q psy15269 1043 EVEDPIMKLVKPSSVHLVKQYLIRTP----KSQKIVNLLSFL----EG------------KRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1043 ~L~dpv~I~v~~~~~~~I~Q~~~~v~----~~~Kl~~Ll~lL----~~------------~k~IIFvnTk~~ad~L~~~L 1102 (1858)
-|++|+-|--.+.-..++ ||.+. -.+-+..|-+|- -. +=.||||+|++.|+.++-.|
T Consensus 199 ~L~~PVAiFkTP~FR~NL---FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 199 KLRNPVAIFKTPTFRDNL---FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred hhcCcHHhccCcchhhhh---hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 568998765443322222 11111 011222333322 10 23899999999999999999
Q ss_pred hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc--cC-cc--
Q psy15269 1103 QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AG-HK-- 1177 (1858)
Q Consensus 1103 ~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--ag-~~-- 1177 (1858)
...|+++.++|.++. ..+|..+.+++-++++.|++||.....|+|-|+|.+||++|+|.+...|.+-. || .|
T Consensus 276 ~~~Gi~A~AYHAGLK---~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~ 352 (641)
T KOG0352|consen 276 EIAGIPAMAYHAGLK---KKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKR 352 (641)
T ss_pred hhcCcchHHHhcccc---cchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCc
Confidence 999999999999998 99999999999999999999999999999999999999999999999999977 22 22
Q ss_pred -eEEEEecCcccHHHHHHHHH
Q psy15269 1178 -EAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1178 -~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
.+-.+|.. +|.+.+..|.+
T Consensus 353 SyCRLYYsR-~D~~~i~FLi~ 372 (641)
T KOG0352|consen 353 SYCRLYYSR-QDKNALNFLVS 372 (641)
T ss_pred cceeeeecc-cchHHHHHHHh
Confidence 45556666 67666665543
No 101
>KOG2626|consensus
Probab=98.78 E-value=2.9e-08 Score=121.29 Aligned_cols=135 Identities=16% Similarity=0.254 Sum_probs=103.1
Q ss_pred EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc-cCCCCCCCceeEEEeCCceee
Q psy15269 1422 CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR-DYNHRTTGDMWLYRAYSGNVY 1499 (1858)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~-~~~~~~~~~~W~y~~~~g~~~ 1499 (1858)
..+++ ...-..++-||+-|+|++|+..|+|| |+|.++...++. +=+|..+.--. .--.|.|--+|+||+-.|.-|
T Consensus 304 l~Is~-drlt~tgeKGy~MvRAshgv~~G~WY--FEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkfsY~wRdk~GtKf 380 (544)
T KOG2626|consen 304 LKISE-DRLTATGEKGYRMVRASHGVLEGAWY--FEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKFSYGWRDKKGTKF 380 (544)
T ss_pred ccccc-cceeeecccceeeeeeccccccccee--EEEEeecCCCccceeeeccccccccccccccccccccccccCCcch
Confidence 44554 34444577899999999999999655 555554443331 44555443333 444567777999999999999
Q ss_pred eCCCCCccCCCcCCCCEEEEEEeccCce--------------------------------------------EEEEeCCc
Q psy15269 1500 HSGEQTTMLPSFTQGDYITVVLDMDAQT--------------------------------------------LSFGKNGE 1535 (1858)
Q Consensus 1500 h~~~~~~~~~~~~~gd~i~v~lDm~~~t--------------------------------------------l~f~~ng~ 1535 (1858)
|-+....|..+|..||+||+.+++=+.+ |.|+|||.
T Consensus 381 h~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~pgS~I~f~KNG~ 460 (544)
T KOG2626|consen 381 HESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIKPGSEIEFFKNGV 460 (544)
T ss_pred hhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccCCCceEEEeeccc
Confidence 9999999999999999999999875544 46999999
Q ss_pred cccccccCCC-CCCceeEEEEEeecC
Q psy15269 1536 EPHLAFQDLD-TSAPLYPIVLFYSTN 1560 (1858)
Q Consensus 1536 ~~GvAF~~l~-~~~~lyP~Vs~y~~~ 1560 (1858)
.+|+||+||- .| ..||+||.|.+.
T Consensus 461 ~qG~Ay~ni~~~G-~YyPaIS~yks~ 485 (544)
T KOG2626|consen 461 SQGVAYENIYKAG-AYYPAISIYKSC 485 (544)
T ss_pred chhhhhhhhhccc-cccceeeecccc
Confidence 9999999998 46 499999999763
No 102
>PRK09694 helicase Cas3; Provisional
Probab=98.77 E-value=6e-08 Score=129.46 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=82.2
Q ss_pred HHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCC---CeEEEEecCCCCccHHHH----HHHHHHH-hcCC---CcEE
Q psy15269 1072 KIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSN---MMTIPMSNNGTSWSHVEC----LELLNLF-NTGK---SSLV 1139 (1858)
Q Consensus 1072 Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g---~~~~~LHG~ms~~~Q~eR----~~~L~~F-r~G~---~~IL 1139 (1858)
.+..+.+.+.. .+++|||||++.|+.+++.|++.+ .++..+||.++ +.+| .++++.| |+|+ ..||
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~---~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFT---LNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCC---HHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34455554443 789999999999999999999764 68999999999 8888 5678899 7776 4799
Q ss_pred EeccccccCCCCCCcceEEEcCCCCChhhhhhhcc
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA 1174 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa 1174 (1858)
|||+|+.+|||| +++.+|+...| .+.||||+|
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaG 657 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLG 657 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHh
Confidence 999999999999 68999999998 679999993
No 103
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.71 E-value=1.4e-08 Score=89.61 Aligned_cols=51 Identities=37% Similarity=0.551 Sum_probs=45.3
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEE
Q psy15269 490 YNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAY 540 (1858)
Q Consensus 490 dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~al 540 (1858)
||+||+||.|++||||..........|+++..+.+.+|++|+||.+||+++
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999954555556789999999999999999999999986
No 104
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.71 E-value=1.5e-08 Score=89.33 Aligned_cols=50 Identities=38% Similarity=0.710 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCCCCcC-CCCCcccccceeeecCCCCCcEEEEEecCceEEEE
Q psy15269 287 EGEVYSWGVGEHGKLG-HGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAV 337 (1858)
Q Consensus 287 dG~VysWG~N~~GQLG-~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aL 337 (1858)
||+||+||.|++|||| .++......|++|.. +.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~-~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPF-LSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGG-GTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECC-CCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 788888999999986 6778999999999999986
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.57 E-value=2.9e-07 Score=124.18 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=99.2
Q ss_pred hhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC---CCcEEEe
Q psy15269 1070 SQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG---KSSLVIM 1141 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G---~~~ILVA 1141 (1858)
..|+..|..++. +.|+|||++-....+.|.+.|...|+....|||+++ +.+|..++++|.+. ..-+|++
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts---~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTG---GEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCC---HHHHHHHHHHhccccCCceEEEEe
Confidence 345555444443 379999999999999999999999999999999999 99999999999753 3457999
Q ss_pred ccccccCCCCCCcceEEEcCCCCChhhhhh------hccCcc--eEEEEecCc-ccHHHHHHHHHHH
Q psy15269 1142 TLSDFIGNDFTNVEQVIIYNLPLSINHYVF------QIAGHK--EAIAFYDPV-ADIGLASSLIKLL 1199 (1858)
Q Consensus 1142 TDVAARGLDIp~V~~VINyDlP~~~e~YIH------RIag~~--~aitfvt~~-~e~~~l~~Ie~~l 1199 (1858)
|.+++.||++...++||+||+|++|..+.| |||.+. ..+.|++.. -|..++....+.+
T Consensus 547 TrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 547 TRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred ccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999955555 555555 567777753 2344444444333
No 106
>KOG0941|consensus
Probab=98.57 E-value=2.2e-09 Score=136.29 Aligned_cols=134 Identities=32% Similarity=0.636 Sum_probs=114.0
Q ss_pred cceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEe-------C
Q psy15269 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTE-------D 340 (1858)
Q Consensus 268 i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~-------d 340 (1858)
.++|.+++||.+|+++++..|++|+||.|.+||+|++.......|..++. +.+....+|+||..|+++++. +
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~s-l~g~p~a~v~~g~~hs~~lS~~~~~lt~e 91 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVES-LKGVPLAQVSAGEAHSFALSSHTVLLTDE 91 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchh-hcCCcHHHHhcCCCcchhhhhchhhcchh
Confidence 34677788999999999999999999999999999995544444888875 788889999999999888776 9
Q ss_pred CeEEEEecCCCCCCCCCCCCccccccccccCC--CceEEeecCceEEEEEc-CCCEEEEEeCCCCC
Q psy15269 341 GLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSCGESHTLVLSQ-DGHTVWSMGSGNLG 403 (1858)
Q Consensus 341 G~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~--~I~~IAcG~~HTlaLt~-dG~tVysWG~N~~G 403 (1858)
|.++++|....||+|++.......|..+...- .+.+|+||..|+++... -|+ +|.+|.+..|
T Consensus 92 ~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~q-sf~~~~~~sG 156 (850)
T KOG0941|consen 92 GKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQ-SFSFGKGASG 156 (850)
T ss_pred ccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcc-eeecccCCCC
Confidence 99999999999999997777777787776543 38999999999998764 464 9999998877
No 107
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.51 E-value=1.5e-07 Score=74.58 Aligned_cols=30 Identities=43% Similarity=0.839 Sum_probs=26.2
Q ss_pred EEEEEEcCceEEEEEeCCeEEEEeCCCCCC
Q psy15269 474 IVDVSIGDSHVLALSQYNEVYAWGSNTMGQ 503 (1858)
Q Consensus 474 Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQ 503 (1858)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 108
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.47 E-value=1.9e-07 Score=74.03 Aligned_cols=30 Identities=40% Similarity=0.873 Sum_probs=26.1
Q ss_pred EEEEEecCceEEEEEeCCeEEEEecCCCCC
Q psy15269 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353 (1858)
Q Consensus 324 IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQ 353 (1858)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 109
>KOG0349|consensus
Probab=98.46 E-value=4.3e-07 Score=107.87 Aligned_cols=110 Identities=26% Similarity=0.411 Sum_probs=83.5
Q ss_pred ceEEeccccc-CceEEEEEEEEeecCCCcceE-EEEEeeccccCCCCCCCceeEEEeCCceeeeCCCCCccCCCcCCCCE
Q psy15269 1439 GYGVANIGIT-RGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQGDY 1516 (1858)
Q Consensus 1439 ~~~l~~~~~s-~G~~~W~~~i~~~~~~~~~~~-vGva~~~~~~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~gd~ 1516 (1858)
-=..|++|+- .|.||||+.+... |-| ||-++..- .-.+|+.-.+.|| +..|.--||-.-..|+..|+..|+
T Consensus 118 hGcRaT~Gl~gkGK~YyEvtitd~-----GLCRVGWsT~qa-sLdlGt~~~gFGf-GGTGkKS~nkqFDdYGe~Ft~~Dv 190 (725)
T KOG0349|consen 118 HGCRATAGLYGKGKYYYEVTITDK-----GLCRVGWSTLQA-SLDLGTGLDGFGF-GGTGKKSTNKQFDDYGEPFTLNDV 190 (725)
T ss_pred hccccccccccCceEEEEEEeccC-----ceeeechhhccc-ccccCcccccccc-CccCccccccccccccCcccccce
Confidence 3456777877 8999999987643 333 34333211 4456788888888 566666565555889999999999
Q ss_pred EEEEEeccCceEEEEeCCcccccccc---CCCCCCceeEEEEE
Q psy15269 1517 ITVVLDMDAQTLSFGKNGEEPHLAFQ---DLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1517 i~v~lDm~~~tl~f~~ng~~~GvAF~---~l~~~~~lyP~Vs~ 1556 (1858)
|||.||+|.+|+.|+|||+.+|+||+ ++ +...|||||-+
T Consensus 191 IGCyLDld~~~v~fsKNG~~lg~AF~ip~~~-kn~~lfPAvvl 232 (725)
T KOG0349|consen 191 IGCYLDLDSRTVWFSKNGEQLGAAFSIPVKY-KNSNLFPAVVL 232 (725)
T ss_pred eeEEEeccCceEEEecCccccceeEEcChhh-cccccchheee
Confidence 99999999999999999999999998 34 23369999976
No 110
>KOG4030|consensus
Probab=98.39 E-value=2.4e-06 Score=89.68 Aligned_cols=145 Identities=20% Similarity=0.308 Sum_probs=107.0
Q ss_pred eeeeEecCCCceE--EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc--cCCCCC
Q psy15269 1409 IDSVSFDKEKCVC--CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR--DYNHRT 1484 (1858)
Q Consensus 1409 v~~f~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~--~~~~~~ 1484 (1858)
+-.+..|...+.+ +++.+ |..+. |.+=+||++++-..+.|+||.|... |. -+||+|+.... ..-.|.
T Consensus 26 ~P~V~LD~~hMG~dVvilk~-g~Ric----GtGG~lAtaPlvQnKsYFevkiQ~t--G~--WgiGlat~q~~l~~~p~g~ 96 (197)
T KOG4030|consen 26 VPTVRLDVGHMGKDVVILKE-GERIC----GTGGALATAPLVQNKSYFEVKIQQT--GT--WGIGLATKQSPLDKVPGGC 96 (197)
T ss_pred CCcEEeehhccCCcEEEEec-CcEEe----ccCceeeeeeeecccceEEEEEeec--ce--eeeeeeeccCccccCCCCC
Confidence 4567889988888 55554 44432 3445899999999999999987642 22 35555555555 555568
Q ss_pred CCceeEEEeCCceeeeCCCC-CccCCCc--CCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEEeecCC
Q psy15269 1485 TGDMWLYRAYSGNVYHSGEQ-TTMLPSF--TQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1485 ~~~~W~y~~~~g~~~h~~~~-~~~~~~~--~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
+.++|+.+ ++|-++||++. .|..-.. ..||.|||-.|-.| |.||+||+.+-.-|+|+.+ ++||.|=+
T Consensus 97 d~~sw~~r-~dga~~hnnee~~r~pa~~~p~EGDvVGvayDHVE--LnfY~NGKn~e~p~~gvRG--~vyPvvYV----- 166 (197)
T KOG4030|consen 97 DEKSWGIR-DDGAIAHNNEEVARMPATVFPEEGDVVGVAYDHVE--LNFYVNGKNVEDPITGVRG--PVYPVVYV----- 166 (197)
T ss_pred cceeEEEc-cCCchhcccHHHhcCccccCCccCcEEEEEeeeEE--EEEEEcCceeccccccccc--ceeeEEEe-----
Confidence 99999886 78889999987 4433233 68999999998765 8899999999999999955 59999987
Q ss_pred CCCeEEEEEeeec
Q psy15269 1562 NGEKVKITDMTVC 1574 (1858)
Q Consensus 1562 ~~~~v~~~~~~~~ 1574 (1858)
+. =.|.|.++.
T Consensus 167 -dd-sAILD~~f~ 177 (197)
T KOG4030|consen 167 -DD-SAILDLKFK 177 (197)
T ss_pred -CC-ceEEEEEec
Confidence 22 246666654
No 111
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.38 E-value=8.2e-06 Score=100.46 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=94.7
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1069 KSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.....+.|+.-++ ++|++|-+=||+.|+.|+++|.+.|+++..||++.. .-+|.+++++.|.|.+.|||--+
T Consensus 428 ~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdid---TlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 428 TKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDID---TLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccch---HHHHHHHHHHHhcCCccEEEeeh
Confidence 3445666666554 389999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccCCCCCCcceEEEcCC-----CCChhhhhhhc---cCcc--eEEEEec
Q psy15269 1144 SDFIGNDFTNVEQVIIYNL-----PLSINHYVFQI---AGHK--EAIAFYD 1184 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDl-----P~~~e~YIHRI---ag~~--~aitfvt 1184 (1858)
+.-.|||+|.|.+|.-+|. .++..+-||-| |++. .+|.+.+
T Consensus 505 LLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 505 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred hhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999999999999884 34455555544 5444 6666544
No 112
>KOG0353|consensus
Probab=98.32 E-value=8.2e-07 Score=103.84 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=98.0
Q ss_pred ccEEEEEEECC--hhhHHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1058 HLVKQYLIRTP--KSQKIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1058 ~~I~Q~~~~v~--~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
.++...+..-| ..+-.+.+.+++++ ...||||=+++.++.++..|+..|+.+..+|..|. +.+|..+-+.+
T Consensus 287 ~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le---p~dks~~hq~w 363 (695)
T KOG0353|consen 287 PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE---PEDKSGAHQGW 363 (695)
T ss_pred CCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC---ccccccccccc
Confidence 34444433333 45557778888875 67899999999999999999999999999999998 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF 1171 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH 1171 (1858)
-.|+++|+|||-....|||-|+|++||+..+|.++|.|.+
T Consensus 364 ~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 364 IAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 9999999999999999999999999999999999999999
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=2.9e-05 Score=102.57 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=75.1
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
++....+|..+++.-+. +.++||||+|...++.++..|.+.|+++..||++++ +.+|..+.+.|+.|. |+
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~---~~Ea~ii~~Ag~~G~--Vt 501 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFH---EREAEIVAQAGRTGA--VT 501 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCccc---HHHHHHHHhCCCCCc--EE
Confidence 34567788888777654 378999999999999999999999999999999999 999999999999998 99
Q ss_pred EeccccccCCCCC
Q psy15269 1140 IMTLSDFIGNDFT 1152 (1858)
Q Consensus 1140 VATDVAARGLDIp 1152 (1858)
||||+|+||+||.
T Consensus 502 IATnmAGRGTDIk 514 (908)
T PRK13107 502 IATNMAGRGTDIV 514 (908)
T ss_pred EecCCcCCCccee
Confidence 9999999999986
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.19 E-value=1.9e-05 Score=108.91 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=77.1
Q ss_pred CcEEEEecChHHHHHHHHHHhhC------CC---eEEEEecCCCCccHHHHHHHHHHHhcCCC-cEEEeccccccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS------NM---MTIPMSNNGTSWSHVECLELLNLFNTGKS-SLVIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~------g~---~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~-~ILVATDVAARGLDIp 1152 (1858)
.|+||||.+++.|+.+.+.|++. ++ .+..+||+.+ +|.+++++|++++. +|+|++|++.+|+|+|
T Consensus 699 ~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~-----~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 699 GKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID-----KPDQLIRRFKNERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc-----chHHHHHHHhCCCCCeEEEEecccccCCCcc
Confidence 68999999999999999988752 22 4667999886 46779999999887 6999999999999999
Q ss_pred CcceEEEcCCCCChhhhhhhcc
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQIA 1174 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRIa 1174 (1858)
.|.+||.++.|.+...|+|+||
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHh
Confidence 9999999999999999999993
No 115
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.15 E-value=8.1e-06 Score=103.20 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
..+++||+..+..++.++..|...|+ +..+.|+.+ +.+|..++++||.|++++||++.|+..|+|+|+++.+|...
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~---~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETP---KEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCC---HHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC
Confidence 57999999999999999999999888 999999999 99999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhc
Q psy15269 1162 LPLSINHYVFQI 1173 (1858)
Q Consensus 1162 lP~~~e~YIHRI 1173 (1858)
...++..|+||+
T Consensus 359 ~t~S~~~~~Q~l 370 (442)
T COG1061 359 PTGSRRLFIQRL 370 (442)
T ss_pred CCCcHHHHHHHh
Confidence 999999999998
No 116
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.12 E-value=4.7e-06 Score=102.65 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=107.0
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECC-hhhHHHHHHHhhcC-----------CcEEEEecChHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP-KSQKIVNLLSFLEG-----------KRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~-~~~Kl~~Ll~lL~~-----------~k~IIFvnTk~~ad 1096 (1858)
|||.-. -+++|+++=-+++.- . .....++.+.+++. ..+|.+.+.++.+. +++|||++++++|.
T Consensus 379 SATVgN-p~elA~~l~a~lV~y--~-~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h 454 (830)
T COG1202 379 SATVGN-PEELAKKLGAKLVLY--D-ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCH 454 (830)
T ss_pred EeecCC-hHHHHHHhCCeeEee--c-CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHH
Confidence 666432 234565554443322 1 22233555555554 67777666665541 78999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE-------EcCCCCChhhh
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI-------IYNLPLSINHY 1169 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI-------NyDlP~~~e~Y 1169 (1858)
+|+.+|...|+++..+|++++ +.+|..+-..|.++++.+.|+|-..+-|+|||.-..++ .+=.|.+..+.
T Consensus 455 ~lA~~L~~kG~~a~pYHaGL~---y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM 531 (830)
T COG1202 455 ELADALTGKGLKAAPYHAGLP---YKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQM 531 (830)
T ss_pred HHHHHhhcCCcccccccCCCc---HHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999998754432 22234444444
Q ss_pred hhhccC-----cceEEEEecC
Q psy15269 1170 VFQIAG-----HKEAIAFYDP 1185 (1858)
Q Consensus 1170 IHRIag-----~~~aitfvt~ 1185 (1858)
.-|.|+ +|..+.++.|
T Consensus 532 ~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 532 LGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcccCCCCcccCceEEEEecC
Confidence 555522 3367777776
No 117
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.92 E-value=0.00014 Score=97.58 Aligned_cols=255 Identities=13% Similarity=0.097 Sum_probs=186.3
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhh-ccccccccccccc-Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKF-VRDMRHVSNNILM-SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~-v~~l~~t~~~ll~-~~~~ 946 (1858)
-.|-++-||=-||.|==..+.--.++-|+..+.. ++|...-+...-...+..| +|+++.| .+||. +-.|
T Consensus 644 KQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~L--------SRF~s~kE~~~il~~la~G~vDIvIGT-HrLL~kdv~F 714 (1139)
T COG1197 644 KQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVL--------SRFRSAKEQKEILKGLAEGKVDIVIGT-HRLLSKDVKF 714 (1139)
T ss_pred CeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEe--------cccCCHHHHHHHHHHHhcCCccEEEec-hHhhCCCcEE
Confidence 3568889999999998888888888889876544 5666665544445555554 7788887 66665 5556
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.++| =+++||=.| | |...- +.|.+.|... ++.
T Consensus 715 kdLG---LlIIDEEqR----F---------GVk~K---------EkLK~Lr~~V-----------------------DvL 746 (1139)
T COG1197 715 KDLG---LLIIDEEQR----F---------GVKHK---------EKLKELRANV-----------------------DVL 746 (1139)
T ss_pred ecCC---eEEEechhh----c---------CccHH---------HHHHHHhccC-----------------------cEE
Confidence 6633 356898877 5 65444 3333333322 233
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHH-hhcCCcEEEEecChHHHHHHHHHHhhC
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLS-FLEGKRSLIFVKTYRDASRIISAVQDS 1105 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~-lL~~~k~IIFvnTk~~ad~L~~~L~~~ 1105 (1858)
+-|||+=+..-.++-..++|--.|...+...-.|+-++..-+..--.+.+++ +.+++++.--.|..++.+.+++.|++.
T Consensus 747 TLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 747 TLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred EeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh
Confidence 4499999999999999999988888777777778777766555544555554 556799999999999999999999984
Q ss_pred --CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhh----hccCcc-e
Q psy15269 1106 --NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVF----QIAGHK-E 1178 (1858)
Q Consensus 1106 --g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIH----RIag~~-~ 1178 (1858)
...+...||.|+ .++=+++|.+|-+|+.+|||||-+..=|||||+++-+|-.+.-.--=.=+| |||+.. .
T Consensus 827 VPEarI~vaHGQM~---e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~ 903 (1139)
T COG1197 827 VPEARIAVAHGQMR---ERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQ 903 (1139)
T ss_pred CCceEEEEeecCCC---HHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccce
Confidence 667899999999 999999999999999999999999999999999998885543332222233 345544 5
Q ss_pred EEEEe
Q psy15269 1179 AIAFY 1183 (1858)
Q Consensus 1179 aitfv 1183 (1858)
|+.++
T Consensus 904 AYAYf 908 (1139)
T COG1197 904 AYAYF 908 (1139)
T ss_pred EEEEE
Confidence 55543
No 118
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.76 E-value=0.00051 Score=88.24 Aligned_cols=254 Identities=12% Similarity=0.087 Sum_probs=155.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh---hh-cccccccccccc-cCc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID---KF-VRDMRHVSNNIL-MSP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~---~~-v~~l~~t~~~ll-~~~ 944 (1858)
.+-|+.||--||-|--+.+..++.-..++ -.++.|.+--......++ .| +++++.|= -|+ |.-
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~~i~-----------V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-ALiQd~V 380 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPLGIR-----------VALLTGSLKGKARKEILEQLASGEIDIVVGTH-ALIQDKV 380 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhcCCe-----------EEEeecccchhHHHHHHHHHhCCCCCEEEEcc-hhhhcce
Confidence 34678888888888877765555422221 255566655444444444 34 55666662 233 233
Q ss_pred cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
++. +..-+++||=-| | |.. .|..|.- ++. . ..|
T Consensus 381 ~F~---~LgLVIiDEQHR----F---------GV~----------------QR~~L~~----------KG~----~-~Ph 413 (677)
T COG1200 381 EFH---NLGLVIIDEQHR----F---------GVH----------------QRLALRE----------KGE----Q-NPH 413 (677)
T ss_pred eec---ceeEEEEecccc----c---------cHH----------------HHHHHHH----------hCC----C-CCc
Confidence 333 234566777655 4 211 1222221 000 0 223
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHH-HHHHhh-cCCcEEEEecCh--------HH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIV-NLLSFL-EGKRSLIFVKTY--------RD 1094 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~-~Ll~lL-~~~k~IIFvnTk--------~~ 1094 (1858)
.-.-|||+=+..-.++.-.--|--.|.-.+.....|.-+.+..+..++.- .+..-+ ++.|+.+-|+-. +.
T Consensus 414 ~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 414 VLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred EEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 33338888777766654333333333333444445666666554433322 222223 347787777533 35
Q ss_pred HHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhh
Q psy15269 1095 ASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQ 1172 (1858)
Q Consensus 1095 ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHR 1172 (1858)
|+.+++.|+. .++.+..+||.|+ ..+.+++|++||+|+++|||||-|..=|+|+|+.+.+|-+|.=+--=.=+|.
T Consensus 494 a~~~~~~L~~~~~~~~vgL~HGrm~---~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQ 570 (677)
T COG1200 494 AEELYEELKSFLPELKVGLVHGRMK---PAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQ 570 (677)
T ss_pred HHHHHHHHHHHcccceeEEEecCCC---hHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHH
Confidence 7788888885 3677999999999 9999999999999999999999999999999999999998865555556775
Q ss_pred c----cCcc---eEEEEecC
Q psy15269 1173 I----AGHK---EAIAFYDP 1185 (1858)
Q Consensus 1173 I----ag~~---~aitfvt~ 1185 (1858)
. |+-. .|+.++.+
T Consensus 571 LRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 571 LRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred hccccCCCCcceEEEEEeCC
Confidence 4 2222 67878776
No 119
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.75 E-value=7.6e-05 Score=88.11 Aligned_cols=125 Identities=17% Similarity=0.146 Sum_probs=84.2
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChh-hHH-----H-HHHHhhcC-----CcEEEEecChHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKS-QKI-----V-NLLSFLEG-----KRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~-~Kl-----~-~Ll~lL~~-----~k~IIFvnTk~~ad 1096 (1858)
+||+|++.++-+...-..++.+...-.......=.++.+... .|+ . .|...|+. ..++||+++....+
T Consensus 240 TATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~e 319 (441)
T COG4098 240 TATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETME 319 (441)
T ss_pred ecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHH
Confidence 899998877654443333333222111122222223333322 222 1 45555542 67999999999999
Q ss_pred HHHHHHhh-CC-CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE
Q psy15269 1097 RIISAVQD-SN-MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI 1158 (1858)
Q Consensus 1097 ~L~~~L~~-~g-~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI 1158 (1858)
.+++.|++ .. ....+.|+. -..|.+..+.||+|++.+||+|-+..||.-+|+|+.+|
T Consensus 320 q~a~~lk~~~~~~~i~~Vhs~-----d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 320 QVAAALKKKLPKETIASVHSE-----DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred HHHHHHHhhCCccceeeeecc-----CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 99999954 33 345778875 35799999999999999999999999999999999655
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.001 Score=87.73 Aligned_cols=269 Identities=13% Similarity=0.098 Sum_probs=147.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccc-cCCc---hhhhhhhhh-cccccccccccccC
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAG-LEPS---TAIIDIDKF-VRDMRHVSNNILMS 943 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG-~~~~---~q~~dl~~~-v~~l~~t~~~ll~~ 943 (1858)
-.+.+|=||++|+-|...-+..|....- +. +..+++=| +... .-...+++| .|+++.|...+--
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~-~~---------~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k- 194 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAG-SL---------DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSK- 194 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcC-Cc---------ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHh-
Confidence 4457888999999999888887764332 11 11111111 1111 122233332 5566666555442
Q ss_pred ccccccc-ccccee-ecccchhhhhh--HHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCC-----ccccc
Q psy15269 944 PNYESDV-NKYSVL-LKYIPQQYKNL--VYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPS-----FDDNN 1014 (1858)
Q Consensus 944 ~~~~~~~-~~~~~l-Ld~a~r~y~~~--~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s-----~~~~~ 1014 (1858)
+++.+. .+.+++ .|-||- +.+. ....+|+-.||..+. ++.-++. -+.|.++-........ ..+..
T Consensus 195 -~~e~L~~~kFdfifVDDVDA-~LkaskNvDriL~LlGf~eE~---i~~a~~~-~~lr~~~~~~~~~~~~~e~~~~~e~~ 268 (1187)
T COG1110 195 -RFEELSKLKFDFIFVDDVDA-ILKASKNVDRLLRLLGFSEEV---IESAYEL-IKLRRKLYGEKRAERVREELREVERE 268 (1187)
T ss_pred -hHHHhcccCCCEEEEccHHH-HHhccccHHHHHHHcCCCHHH---HHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222 234444 677765 1111 124557778998872 2111111 1222222110000000 00000
Q ss_pred ccccccccccccCCCCCCcH-hHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecC--
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWG-DIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKT-- 1091 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~-~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnT-- 1091 (1858)
..............|||-.+ ..+-..-+.|-+.. +.-.....-+|...|+..+..+|...|++.+.. -.|||+++
T Consensus 269 ~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe-vG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~-GgLIfV~~d~ 346 (1187)
T COG1110 269 REKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE-VGSGGEGLRNIVDIYVESESLEKVVELVKKLGD-GGLIFVPIDY 346 (1187)
T ss_pred HHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc-cCccchhhhheeeeeccCccHHHHHHHHHHhCC-CeEEEEEcHH
Confidence 01111122222223666432 23322222222221 111122233466666666666777777776654 58999999
Q ss_pred -hHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec----cccccCCCCCC-cceEEEcCCCC
Q psy15269 1092 -YRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT----LSDFIGNDFTN-VEQVIIYNLPL 1164 (1858)
Q Consensus 1092 -k~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT----DVAARGLDIp~-V~~VINyDlP~ 1164 (1858)
++.++++++.|+..|+++..+|... .+.+++|..|++++||.. .++.||||.|. +.++|=|++|.
T Consensus 347 G~e~aeel~e~Lr~~Gi~a~~~~a~~--------~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 347 GREKAEELAEYLRSHGINAELIHAEK--------EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hHHHHHHHHHHHHhcCceEEEeeccc--------hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999999999999999999999843 578999999999999875 47889999986 67999999995
No 121
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.43 E-value=0.00058 Score=92.40 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcc-cEEEEEEECC---------hhhHHH---HHHHhh--cCCcEEEEecChH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVH-LVKQYLIRTP---------KSQKIV---NLLSFL--EGKRSLIFVKTYR 1093 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~-~I~Q~~~~v~---------~~~Kl~---~Ll~lL--~~~k~IIFvnTk~ 1093 (1858)
|||.-. ..++++++...+....+...... ..+..+..-+ ...+.. .+...+ ..-++|+|+.+++
T Consensus 239 SAT~~n-p~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~ 317 (851)
T COG1205 239 SATLAN-PGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRK 317 (851)
T ss_pred eccccC-hHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhh
Confidence 666433 34455566655555434433322 2444444433 113332 333222 3479999999999
Q ss_pred HHHHHH----HHHhhCC----CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC-
Q psy15269 1094 DASRII----SAVQDSN----MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL- 1164 (1858)
Q Consensus 1094 ~ad~L~----~~L~~~g----~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~- 1164 (1858)
.++.++ +.+...+ ..+...+|++. ..+|.++..+|++|+..++++|..+.=||||.+++.||++..|.
T Consensus 318 ~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~---~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~ 394 (851)
T COG1205 318 QVELLYLSPRRRLVREGGKLLDAVSTYRAGLH---REERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV 394 (851)
T ss_pred hhhhhhhchhHHHhhcchhhhhheeeccccCC---HHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc
Confidence 999997 4454555 56888999998 99999999999999999999999999999999999999999999
Q ss_pred Chhhhhhhc---cCcc-eEEEEec
Q psy15269 1165 SINHYVFQI---AGHK-EAIAFYD 1184 (1858)
Q Consensus 1165 ~~e~YIHRI---ag~~-~aitfvt 1184 (1858)
+..+|.+|. ++++ .++.++.
T Consensus 395 s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 395 SVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred hHHHHHHhhhhccCCCCCceEEEE
Confidence 789999998 3333 4555544
No 122
>KOG2243|consensus
Probab=97.42 E-value=0.00035 Score=90.03 Aligned_cols=124 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCCCceeEEEeCCceeeeCCCCCccC
Q psy15269 1430 SLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTTGDMWLYRAYSGNVYHSGEQTTML 1508 (1858)
Q Consensus 1430 ~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~~~~W~y~~~~g~~~h~~~~~~~~ 1508 (1858)
..+-.+.-.|+-.+-..+.--..-|+|+.+..+.|+. -||-+|-.-+ |+-+|.|+..+.|.+..+.-+|.| +..++
T Consensus 1084 ~~sgt~dk~r~fr~eksyavkagkwyfefe~vt~gdm--rvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg-~~~~g 1160 (5019)
T KOG2243|consen 1084 KCSGTGDKFRFFRAEKSYAVKAGKWYFEFETVTAGDM--RVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQG-NEHFG 1160 (5019)
T ss_pred HhcCCcceeEEEeeehhheeeccceEEEEEEeeccce--eecccCCCCCcchhhCCccceeeeccchhhhhhcc-ccccc
Q ss_pred CCcCCCCEEEEEEeccCceEEEEeCCc----ccc--ccccCCCCCCceeEEEEE
Q psy15269 1509 PSFTQGDYITVVLDMDAQTLSFGKNGE----EPH--LAFQDLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1509 ~~~~~gd~i~v~lDm~~~tl~f~~ng~----~~G--vAF~~l~~~~~lyP~Vs~ 1556 (1858)
.+.++||+|||++||++.++-|+.||+ .-| +||.+.+-+..|.|+-++
T Consensus 1161 rswq~gdvvgcmi~l~d~sm~ftlngeili~~~gselaf~d~di~~gfipic~l 1214 (5019)
T KOG2243|consen 1161 RSWQAGDVVGCMIDLDDASMIFTLNGEILIDDKGSELAFADFDIEDGFIPICCL 1214 (5019)
T ss_pred cccCCCCeEEEEEecccceEEEEEcCeEEEcCCCCeeeeccccccCCceeeeeh
No 123
>KOG1477|consensus
Probab=97.36 E-value=0.00073 Score=85.49 Aligned_cols=153 Identities=21% Similarity=0.125 Sum_probs=119.3
Q ss_pred EecCCCceE--EEEecCCeEEEecC-----CCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc-cCCCC
Q psy15269 1413 SFDKEKCVC--CTVECGGQSLIHGP-----GTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR-DYNHR 1483 (1858)
Q Consensus 1413 ~~D~~~~~~--~~~~~~~~~~~~~~-----~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~-~~~~~ 1483 (1858)
.||+--..+ -....|.-+.-... .+.++.-++...+.-+...+|++...+.+.++ +.||....... +...|
T Consensus 33 ~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~~~g 112 (469)
T KOG1477|consen 33 EVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSIIESEG 112 (469)
T ss_pred eEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEecccccccccc
Confidence 556555555 33444443333332 46777888999999988888888888888885 88999888888 88999
Q ss_pred CCCceeEEEeCCceeee-CCCC-CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEE-----EEE
Q psy15269 1484 TTGDMWLYRAYSGNVYH-SGEQ-TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPI-----VLF 1556 (1858)
Q Consensus 1484 ~~~~~W~y~~~~g~~~h-~~~~-~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~-----Vs~ 1556 (1858)
+..++|+|++.+|.+|| ..+. .++.|+|+.||.|+|=.+-....+.|++||...|.+|+.+... +||= +.|
T Consensus 113 ~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~~--~~~~~~n~~~~~ 190 (469)
T KOG1477|consen 113 YTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSPD--LLEENGNLAWLF 190 (469)
T ss_pred hhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCcccccccccccccc--ccccccceeeEe
Confidence 88889999999999999 5555 9999999999999999999999999999999999999999876 4443 333
Q ss_pred eecCCCCCeEEEEEe
Q psy15269 1557 YSTNANGEKVKITDM 1571 (1858)
Q Consensus 1557 y~~~~~~~~v~~~~~ 1571 (1858)
.+ ||.|.+.--
T Consensus 191 ---s~-~~~I~~~~g 201 (469)
T KOG1477|consen 191 ---SP-NEEVEVNFG 201 (469)
T ss_pred ---cc-Cceeeeeec
Confidence 33 666665544
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.17 E-value=0.052 Score=73.14 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=77.4
Q ss_pred ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC-CcEEEe
Q psy15269 1068 PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SSLVIM 1141 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~ILVA 1141 (1858)
...+|..+++.-+. +..++|-|.+....+.++..|.+.|++...|+..- .+++..+-. +.|+ -.|-||
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~-----~~~Ea~iia-~AG~~g~VTIA 622 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKN-----HAQEAEIIA-GAGKLGAVTVA 622 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccch-----hhhHHHHHH-hcCCCCcEEEe
Confidence 34556666655442 26699999999999999999999999998888863 344433322 3444 468999
Q ss_pred ccccccCCCCCCc--------ceEEEcCCCCChh---hhhhhccCcc---eEEEEecC
Q psy15269 1142 TLSDFIGNDFTNV--------EQVIIYNLPLSIN---HYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1142 TDVAARGLDIp~V--------~~VINyDlP~~~e---~YIHRIag~~---~aitfvt~ 1185 (1858)
|+.|+||-||.-- =|||--..|.+.- .-.-|.|++| .+.-|++-
T Consensus 623 TNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSl 680 (970)
T PRK12899 623 TNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSF 680 (970)
T ss_pred eccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEc
Confidence 9999999998432 2888877777652 2222445555 56666665
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=97.07 E-value=0.0005 Score=77.41 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=100.2
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..++++-|+++|+.|+...+..+....+ ++...+.||..+......++...++++.||..+++ ....
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~ 138 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTN-----------LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK 138 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCC-----------ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC
Confidence 3468999999999999888776655432 34466788887766666666567789999988775 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.........++||++. +.+.+|... +.++++.+++.+|.+.+
T Consensus 139 ~~~~~l~~lIvDE~h~----------~~~~~~~~~----~~~~~~~l~~~~~~~~~------------------------ 180 (203)
T cd00268 139 LDLSKVKYLVLDEADR----------MLDMGFEDQ----IREILKLLPKDRQTLLF------------------------ 180 (203)
T ss_pred CChhhCCEEEEeChHH----------hhccChHHH----HHHHHHhCCcccEEEEE------------------------
Confidence 3333445566777766 667788888 99999999888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
|||+++.+.++++.++++|+.|
T Consensus 181 --SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 181 --SATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred --eccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999886
No 126
>KOG0391|consensus
Probab=97.00 E-value=0.011 Score=78.47 Aligned_cols=123 Identities=17% Similarity=0.246 Sum_probs=104.6
Q ss_pred EEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KS 1136 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~ 1136 (1858)
++-.-|.|.|-+++..|++-|+. .|++||+.-.+..|-|-.+|..+|+--..|-|.-+ -++|...+++|... ++
T Consensus 1252 lrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~---vEqRQaLmerFNaD~RI 1328 (1958)
T KOG0391|consen 1252 LRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTS---VEQRQALMERFNADRRI 1328 (1958)
T ss_pred hheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCcc---HHHHHHHHHHhcCCCce
Confidence 34444578899999999998875 79999999999999999999999999999999998 89999999999653 33
Q ss_pred -cEEEeccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc-eEE-EEecC
Q psy15269 1137 -SLVIMTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK-EAI-AFYDP 1185 (1858)
Q Consensus 1137 -~ILVATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~-~ai-tfvt~ 1185 (1858)
..++.|-...-||++.+.+.||=||--+++ .+..||||... +.| -|+..
T Consensus 1329 fcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1329 FCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred EEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 347899999999999999999999998886 89999998777 444 45543
No 127
>KOG1002|consensus
Probab=96.75 E-value=0.0043 Score=76.16 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=93.4
Q ss_pred hhhHHHHHHHhhc---C----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE-E
Q psy15269 1069 KSQKIVNLLSFLE---G----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL-V 1139 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~---~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I-L 1139 (1858)
...|+++|..-|. . -|.|||..=....+.+.-.|.+.|+.++-+-|+|+ +.+|..+++.|++. .++| |
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs---~~ardatik~F~nd~~c~vfL 694 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMS---PAARDATIKYFKNDIDCRVFL 694 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCC---hHHHHHHHHHhccCCCeEEEE
Confidence 4567777766442 2 67999998888999999999999999999999999 99999999999874 4555 4
Q ss_pred EeccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
|.--..+-.|+....++|+-.|+=+++ .+-|||||... ..+.|+..
T Consensus 695 vSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred EEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 555555556899999999999987776 78999997766 77888765
No 128
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.75 E-value=0.0058 Score=82.31 Aligned_cols=139 Identities=13% Similarity=0.048 Sum_probs=98.7
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccC-----CcccEEEEEE-ECChh---hHHHHHHHhhc-CCcEEEEecChHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPS-----SVHLVKQYLI-RTPKS---QKIVNLLSFLE-GKRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~-----~~~~I~Q~~~-~v~~~---~Kl~~Ll~lL~-~~k~IIFvnTk~~ad~L 1098 (1858)
|||+|+..++..+..+.+...+..... ....+.+... .+... +........++ +.+++|-|||.+.|.++
T Consensus 377 SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~ 456 (733)
T COG1203 377 SATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIEL 456 (733)
T ss_pred ecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHH
Confidence 999999999988888766655544311 1112222211 11111 22333333333 38899999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH----hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF----NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F----r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
++.|+..+.++..+||.+. ...|.+.++.. +.+...|+|||-|..=|+||. .+.+|== +.-+++-|||.
T Consensus 457 Y~~Lk~~~~~v~LlHSRf~---~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~ 529 (733)
T COG1203 457 YEKLKEKGPKVLLLHSRFT---LKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRA 529 (733)
T ss_pred HHHHHhcCCCEEEEecccc---hhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHH
Confidence 9999998878999999999 88888888864 456888999999999999997 6776632 44457778876
No 129
>KOG0385|consensus
Probab=96.72 E-value=0.011 Score=76.28 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=114.6
Q ss_pred HHHhcCCCEEEE-Ecc-CCcccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecC
Q psy15269 1040 SNIEVEDPIMKL-VKP-SSVHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNN 1115 (1858)
Q Consensus 1040 a~~~L~dpv~I~-v~~-~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ 1115 (1858)
.++..+.|.... +.+ ..-+..+|.+....+..-++.|+..|+. .|++||..--+..|-|-.++.-.+|....|-|.
T Consensus 441 LRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGS 520 (971)
T KOG0385|consen 441 LRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGS 520 (971)
T ss_pred HHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCC
Confidence 455566776543 333 2223345555555666677888777754 899999998899999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcC---CCcEEEeccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEec
Q psy15269 1116 GTSWSHVECLELLNLFNTG---KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYD 1184 (1858)
Q Consensus 1116 ms~~~Q~eR~~~L~~Fr~G---~~~ILVATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt 1184 (1858)
.+ .++|..+++.|... ++-.|++|-+++-||+....+.||=||--++| .+--||||.++ .++-|++
T Consensus 521 t~---~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 521 TS---HEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred CC---cHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 99 99999999999654 34469999999999999999999999999987 67889998877 7888888
Q ss_pred C
Q psy15269 1185 P 1185 (1858)
Q Consensus 1185 ~ 1185 (1858)
.
T Consensus 598 e 598 (971)
T KOG0385|consen 598 E 598 (971)
T ss_pred c
Confidence 5
No 130
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.69 E-value=0.025 Score=71.17 Aligned_cols=232 Identities=16% Similarity=0.224 Sum_probs=157.1
Q ss_pred ccccccccccc--------CccccccccccceeecccchhhhhhHH------hhhhhhcCCCchh--hHHHHHHHHH-h-
Q psy15269 932 DMRHVSNNILM--------SPNYESDVNKYSVLLKYIPQQYKNLVY------SYLIQQTALSPRE--KTVLEQIFSV-V- 993 (1858)
Q Consensus 932 ~l~~t~~~ll~--------~~~~~~~~~~~~~lLd~a~r~y~~~~~------A~lL~~mGF~~~~--~esL~~Il~~-L- 993 (1858)
+++|.|=.|=+ ..+++.+++.+-+++|.||= +-. -..+.++-.+|.. .-++..|..- |
T Consensus 134 IIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~----l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 134 IIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADV----LLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred EEEEChHHHHHHhccccccccccchhheeeeEeechhhH----HHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 67777744432 45688888888899999864 211 2334444444421 1123333221 1
Q ss_pred ---HHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCE-EEEEcc--C-------CcccE
Q psy15269 994 ---NKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPI-MKLVKP--S-------SVHLV 1060 (1858)
Q Consensus 994 ---pk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv-~I~v~~--~-------~~~~I 1060 (1858)
...|||++| |+...+++..+.+..+.|.. .+.+.. . -...|
T Consensus 210 g~a~~~RQtii~--------------------------S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v 263 (442)
T PF06862_consen 210 GQAKYYRQTIIF--------------------------SSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQV 263 (442)
T ss_pred CcchheeEeEEe--------------------------cCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCC
Confidence 345777777 99999999999999887763 222221 1 11237
Q ss_pred EEEEEECC-------hhhHHHHHHH----hhc-C---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHH
Q psy15269 1061 KQYLIRTP-------KSQKIVNLLS----FLE-G---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECL 1125 (1858)
Q Consensus 1061 ~Q~~~~v~-------~~~Kl~~Ll~----lL~-~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~ 1125 (1858)
+|.+...+ ...+++.... -+. . .+++||+++--.=-++-..|++.++....+|.-.+ +.+-.
T Consensus 264 ~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts---~~~is 340 (442)
T PF06862_consen 264 RQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTS---NSDIS 340 (442)
T ss_pred ceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCC---HHHHH
Confidence 88887643 1223332222 222 2 78999999999999999999999999999999988 89988
Q ss_pred HHHHHHhcCCCcEEEeccccc--cCCCCCCcceEEEcCCCCChhhhhhhc-----cC-------cceEEEEecCcccHHH
Q psy15269 1126 ELLNLFNTGKSSLVIMTLSDF--IGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-------HKEAIAFYDPVADIGL 1191 (1858)
Q Consensus 1126 ~~L~~Fr~G~~~ILVATDVAA--RGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-------~~~aitfvt~~~e~~~ 1191 (1858)
++-..|.+|+.+||+-|.=+- |=..|.+|.+||=|.+|..++-|-.=+ .. ...++.+++. -|.-
T Consensus 341 RAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk-~D~~- 418 (442)
T PF06862_consen 341 RARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK-YDAL- 418 (442)
T ss_pred HHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH-hHHH-
Confidence 999999999999999998443 445678899999999999998887755 11 1267788887 4433
Q ss_pred HHHHHHHHh
Q psy15269 1192 ASSLIKLLE 1200 (1858)
Q Consensus 1192 l~~Ie~~l~ 1200 (1858)
+||+..+
T Consensus 419 --~LErIVG 425 (442)
T PF06862_consen 419 --RLERIVG 425 (442)
T ss_pred --HHHHHhC
Confidence 3444443
No 131
>KOG0384|consensus
Probab=96.62 E-value=0.0099 Score=79.99 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=95.9
Q ss_pred HHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc---CCCcEEEecccccc
Q psy15269 1073 IVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT---GKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1073 l~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~---G~~~ILVATDVAAR 1147 (1858)
++.|+--|+. .|++||..-.+..|-|+++|...+|+...|-|.+. -..|..+|+.|.+ ..+-.|.+|-+.+=
T Consensus 688 LDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvr---gelRq~AIDhFnap~SddFvFLLSTRAGGL 764 (1373)
T KOG0384|consen 688 LDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVR---GELRQQAIDHFNAPDSDDFVFLLSTRAGGL 764 (1373)
T ss_pred HHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcc---hHHHHHHHHhccCCCCCceEEEEecccCcc
Confidence 4455544443 79999999999999999999999999999999998 9999999999965 45668999999999
Q ss_pred CCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1148 GNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
||+....+.||-||--++| ..--||||.+. ..+=||+.
T Consensus 765 GINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred cccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecC
Confidence 9999999999999999988 56789998777 67778885
No 132
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.45 E-value=0.021 Score=78.01 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=87.9
Q ss_pred cEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC--CCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1084 RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG--KSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1084 k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G--~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+++||++-....+-+...|+..++....++|.++ .++|...+++|.++ ..-+++.|-++.-||+....++||.||
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~---~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d 789 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTP---AKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFD 789 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCC---hhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEec
Confidence 8999999999999999999999999999999998 99999999999986 444678888999999999999999999
Q ss_pred CCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1162 LPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1162 lP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
..+++ .+..||||.+. ..+-|++.
T Consensus 790 ~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~ 821 (866)
T COG0553 790 PWWNPAVELQAIDRAHRIGQKRPVKVYRLITR 821 (866)
T ss_pred cccChHHHHHHHHHHHHhcCcceeEEEEeecC
Confidence 99998 66777886666 67777776
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.43 E-value=0.0081 Score=82.33 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=61.5
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcc--e
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVE--Q 1156 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~--~ 1156 (1858)
++++||+++.+..+.+++.|.. .++++ +..+. ...|.+++++|++++..||++|+.++||+|+++.. .
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~----~~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~ 748 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGI----NGSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVC 748 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCC----CccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEE
Confidence 7899999999999999999975 34443 33333 24789999999999999999999999999999887 4
Q ss_pred EEEcCCCC
Q psy15269 1157 VIIYNLPL 1164 (1858)
Q Consensus 1157 VINyDlP~ 1164 (1858)
||-.-+|.
T Consensus 749 viI~~LPf 756 (850)
T TIGR01407 749 LVIPRLPF 756 (850)
T ss_pred EEEeCCCC
Confidence 55566664
No 134
>KOG0389|consensus
Probab=96.22 E-value=0.036 Score=72.11 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=96.9
Q ss_pred ChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc-EEEecc
Q psy15269 1068 PKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS-LVIMTL 1143 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~-ILVATD 1143 (1858)
.|-.++..|+.-++. .|++||..=-...|-|-..|.-.++....|-|.-. -..|...+++|... .+. .|..|-
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTq---V~~RQ~lId~Fn~d~difVFLLSTK 837 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQ---VNDRQDLIDEFNTDKDIFVFLLSTK 837 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCcc---chHHHHHHHhhccCCceEEEEEeec
Confidence 344556666655543 89999998888899999999999999999999886 78999999999654 333 489999
Q ss_pred ccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1144 SDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1144 VAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
+.+-||+....++||-||+-.+| |+-.||+|..+ +.+.|++.
T Consensus 838 AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk 887 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITK 887 (941)
T ss_pred cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEec
Confidence 99999999999999999998776 99999998777 67778886
No 135
>KOG0953|consensus
Probab=96.20 E-value=0.12 Score=65.30 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=66.1
Q ss_pred hcCCcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCCCccHHHHHHHHHHHhc--CCCcEEEeccccccCCCCCCcce
Q psy15269 1080 LEGKRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGTSWSHVECLELLNLFNT--GKSSLVIMTLSDFIGNDFTNVEQ 1156 (1858)
Q Consensus 1080 L~~~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms~~~Q~eR~~~L~~Fr~--G~~~ILVATDVAARGLDIp~V~~ 1156 (1858)
++.+-+||=. +|+..-.+...+++.|.. +..|+|+++ ++.|.+--..|.+ ++.+||||||+...||+. +++-
T Consensus 355 lk~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLP---PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrR 429 (700)
T KOG0953|consen 355 LKPGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLP---PETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRR 429 (700)
T ss_pred CCCCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCC---CchhHHHHHHhCCCCCccceEEeeccccccccc-ceeE
Confidence 3345566644 577788899999988776 999999999 9999999999976 999999999999999997 5777
Q ss_pred EEEcCCC
Q psy15269 1157 VIIYNLP 1163 (1858)
Q Consensus 1157 VINyDlP 1163 (1858)
||=|++-
T Consensus 430 iiF~sl~ 436 (700)
T KOG0953|consen 430 IIFYSLI 436 (700)
T ss_pred EEEeecc
Confidence 8877775
No 136
>KOG0392|consensus
Probab=96.19 E-value=0.025 Score=76.08 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=84.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCe-EE--EEecCCCCccHHHHHHHHHHHhcC-CCcE-EEeccccccCCCCCCcceE
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMM-TI--PMSNNGTSWSHVECLELLNLFNTG-KSSL-VIMTLSDFIGNDFTNVEQV 1157 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~-~~--~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I-LVATDVAARGLDIp~V~~V 1157 (1858)
.|++|||+-|...+.+-+-|.+.-++ +. .+-|..+ +.+|.++.++|.++ .+.+ |.+|-|.+-||+..+.+.|
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVp---p~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVP---PGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCC---cHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 47999999999999999998875443 33 5788887 99999999999998 7777 5899999999999999999
Q ss_pred EEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1158 IIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1158 INyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
|=++--|+| -+--||||.++ ..+-|++.
T Consensus 1418 VFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItr 1453 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1453 (1549)
T ss_pred EEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhc
Confidence 999988887 67889998777 45667765
No 137
>KOG0390|consensus
Probab=96.10 E-value=0.032 Score=73.89 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=92.0
Q ss_pred EEECChhhHHHHHHHhhcC--CcEEE----EecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC-
Q psy15269 1064 LIRTPKSQKIVNLLSFLEG--KRSLI----FVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS- 1136 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~~--~k~II----FvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~- 1136 (1858)
.....+..|+..|..++.. .++.+ -.|.+..-+.+....+-.|+.+..|||+|+ +.+|.++++.|.+-..
T Consensus 571 ~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~---~~qRq~~vd~FN~p~~~ 647 (776)
T KOG0390|consen 571 AGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS---IKQRQKLVDTFNDPESP 647 (776)
T ss_pred cccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc---hHHHHHHHHhccCCCCC
Confidence 3334456777777777632 33333 346666666666666668999999999999 9999999999966332
Q ss_pred -c-EEEeccccccCCCCCCcceEEEcCCCCChhhh---hhhc---cCcc--eEEEEecCc--ccHHHHHHHHH
Q psy15269 1137 -S-LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHY---VFQI---AGHK--EAIAFYDPV--ADIGLASSLIK 1197 (1858)
Q Consensus 1137 -~-ILVATDVAARGLDIp~V~~VINyDlP~~~e~Y---IHRI---ag~~--~aitfvt~~--~e~~~l~~Ie~ 1197 (1858)
. .|..|=+.+.||..-+.+.||-||..++|..= +-|+ |.++ ..+.|++.. +|..+-++..+
T Consensus 648 ~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K 720 (776)
T KOG0390|consen 648 SFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHK 720 (776)
T ss_pred ceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHh
Confidence 3 57888889999999999999999999999433 3344 5555 566777642 34444444433
No 138
>KOG4150|consensus
Probab=96.09 E-value=0.034 Score=69.36 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=90.3
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC----CC----eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS----NM----MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN 1153 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~----g~----~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~ 1153 (1858)
+-++|.||..++-|+.+...-+.. |- .+..+.|+-+ .++|.++-.+.-.|+..-+|||+...-||||..
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~---A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYI---AEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccc---hhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 478999999999988876655532 21 3567789988 999999999988899999999999999999999
Q ss_pred cceEEEcCCCCChhhhhhhc--cCcc--eEEEE----ecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1154 VEQVIIYNLPLSINHYVFQI--AGHK--EAIAF----YDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1154 V~~VINyDlP~~~e~YIHRI--ag~~--~aitf----vt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++.|+...+|.+...+-+.. ||+. -+.++ ..| -|..++..=+.++...+.+
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P-VDQ~Y~~HP~~l~~~pN~E 660 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP-VDQYYMSHPDKLFGSPNEE 660 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccc-hhhHhhcCcHHHhCCCcce
Confidence 99999999999999998877 3332 23333 334 4445555555555444333
No 139
>KOG0387|consensus
Probab=95.95 E-value=0.052 Score=70.75 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=98.3
Q ss_pred hhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHh-hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC-c-EEEe
Q psy15269 1070 SQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQ-DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS-S-LVIM 1141 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~-~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~-~-ILVA 1141 (1858)
.-|+..+..++. +.++++|..|+...+.|-.+|. ..||....|-|.-+ -..|...+++|.++.. . .|++
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~---~~~R~~lVd~Fne~~s~~VFLLT 605 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP---AALRQKLVDRFNEDESIFVFLLT 605 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc---cchhhHHHHhhcCCCceEEEEEE
Confidence 345555555554 3899999999999999999999 58999999999998 9999999999987654 3 4899
Q ss_pred ccccccCCCCCCcceEEEcCCCCChhhhhh------hccCcc--eEEEEecCc--ccHHHHHHHHH
Q psy15269 1142 TLSDFIGNDFTNVEQVIIYNLPLSINHYVF------QIAGHK--EAIAFYDPV--ADIGLASSLIK 1197 (1858)
Q Consensus 1142 TDVAARGLDIp~V~~VINyDlP~~~e~YIH------RIag~~--~aitfvt~~--~e~~~l~~Ie~ 1197 (1858)
|-|..-|++....+-||-||+-|+|.+=.| |+|.++ ..+=|++.. +|.-+-++|-+
T Consensus 606 TrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~K 671 (923)
T KOG0387|consen 606 TRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFK 671 (923)
T ss_pred ecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHH
Confidence 999999999999999999999999854443 456655 455566642 34455555544
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=95.89 E-value=0.26 Score=66.13 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=84.0
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL 1138 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I 1138 (1858)
++....+|..+++.-+. +..++|.|.+....+.|+..|.+.|++...|+..- .+|+..+-. +.| .-.|
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~-----~e~EA~IIa-~AG~~GaV 477 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ-----NAREAEIIA-KAGQKGAI 477 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc-----hhhHHHHHH-hCCCCCeE
Confidence 45567788888777554 26899999999999999999999999999998853 445544443 556 4568
Q ss_pred EEeccccccCCCCCCcc--------eEEEcCCCCCh---hhhhhhccCcc---eEEEEecC
Q psy15269 1139 VIMTLSDFIGNDFTNVE--------QVIIYNLPLSI---NHYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1139 LVATDVAARGLDIp~V~--------~VINyDlP~~~---e~YIHRIag~~---~aitfvt~ 1185 (1858)
-|||+.|+||-||.--. |||....|.+. ..---|.|++| .+--|++-
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEec
Confidence 99999999999997544 99998887765 12222445555 44445554
No 141
>KOG0952|consensus
Probab=95.83 E-value=0.18 Score=67.63 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=140.2
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh-hhcccccccccccccCcc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID-KFVRDMRHVSNNILMSPN 945 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~-~~v~~l~~t~~~ll~~~~ 945 (1858)
++-..--|.|.++||.-+-+..+.-+..-.++.-|. .|-.+ .-.-+ .-.++++-|| +.
T Consensus 163 ~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~EL-----------TGD~q----l~~tei~~tqiiVTTP------EK 221 (1230)
T KOG0952|consen 163 DDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVREL-----------TGDTQ----LTKTEIADTQIIVTTP------EK 221 (1230)
T ss_pred CCceEEEEechHHHHHHHHHHHhhhcccccceEEEe-----------cCcch----hhHHHHHhcCEEEecc------cc
Confidence 455567899999999999877776666555555444 33322 22222 1234566665 23
Q ss_pred cccc-----------ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccc
Q psy15269 946 YESD-----------VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNN 1014 (1858)
Q Consensus 946 ~~~~-----------~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~ 1014 (1858)
|+-. +.+.=+++|||- ||. ++.+.+++.|...+-+.=.+...
T Consensus 222 wDvvTRk~~~d~~l~~~V~LviIDEVH----------lLh-----d~RGpvlEtiVaRtlr~vessqs------------ 274 (1230)
T KOG0952|consen 222 WDVVTRKSVGDSALFSLVRLVIIDEVH----------LLH-----DDRGPVLETIVARTLRLVESSQS------------ 274 (1230)
T ss_pred eeeeeeeeccchhhhhheeeEEeeeeh----------hhc-----CcccchHHHHHHHHHHHHHhhhh------------
Confidence 3322 223335577772 122 23345588887776543222111
Q ss_pred ccccccccccccCCCCCCcHhHHHHHHHhcCCCEE-EE-EccC-CcccEEEEEEECChh-----------hHHHHHHHhh
Q psy15269 1015 VSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIM-KL-VKPS-SVHLVKQYLIRTPKS-----------QKIVNLLSFL 1080 (1858)
Q Consensus 1015 ~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~-I~-v~~~-~~~~I~Q~~~~v~~~-----------~Kl~~Ll~lL 1080 (1858)
. ....--|||.|. ++++|+..=.||.. +. .... -...++|.++-.+.. -+.+++.+++
T Consensus 275 -----~--IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~ 346 (1230)
T KOG0952|consen 275 -----M--IRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL 346 (1230)
T ss_pred -----h--eEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH
Confidence 0 001123899884 44566433334321 21 1111 122367776655433 1245556666
Q ss_pred cC-CcEEEEecChHHHHHHHHHHhhC----CCe-------------------EEEEecCCCCccHHHHHHHHHHHhcCCC
Q psy15269 1081 EG-KRSLIFVKTYRDASRIISAVQDS----NMM-------------------TIPMSNNGTSWSHVECLELLNLFNTGKS 1136 (1858)
Q Consensus 1081 ~~-~k~IIFvnTk~~ad~L~~~L~~~----g~~-------------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~ 1136 (1858)
.. .+++|||.++.++.+.|+.|.+. |.. ...-|.+|. .+.|.-+-+.|+.|.+
T Consensus 347 ~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~---r~DR~l~E~~F~~G~i 423 (1230)
T KOG0952|consen 347 QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGML---RSDRQLVEKEFKEGHI 423 (1230)
T ss_pred HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccc---hhhHHHHHHHHhcCCc
Confidence 55 78999999999999999998753 222 233477777 8999999999999999
Q ss_pred cEEEeccccccCCCCCCcceEE
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVI 1158 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VI 1158 (1858)
+||+||.-.|=|.+.|.--.+|
T Consensus 424 ~vL~cTaTLAwGVNLPA~aViI 445 (1230)
T KOG0952|consen 424 KVLCCTATLAWGVNLPAYAVII 445 (1230)
T ss_pred eEEEecceeeeccCCcceEEEe
Confidence 9999999999999999765554
No 142
>KOG1000|consensus
Probab=95.79 E-value=0.064 Score=66.64 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=95.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc-CCCcE-EEeccccccCCCCCCcceEEEc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT-GKSSL-VIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~-G~~~I-LVATDVAARGLDIp~V~~VINy 1160 (1858)
.|.+||+..+.-.|.+...+.+.++....|-|.-+ ...|....++|.. .+++| ++.--.+.-||++...+.||=.
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~---s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTP---SHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCC---chhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 78999999999999999999999999999999998 8999999999965 34554 4556678899999999999999
Q ss_pred CCCCCh------hhhhhhccCcc-eEEE-EecCc-ccHHHHHHHHHHHhh
Q psy15269 1161 NLPLSI------NHYVFQIAGHK-EAIA-FYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1161 DlP~~~------e~YIHRIag~~-~ait-fvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
++|++| |+-+||||.+. +-|. |+... .|..+...|.+.++.
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~v 619 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDV 619 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHH
Confidence 999997 99999998887 4443 44321 345566666666555
No 143
>COG1204 Superfamily II helicase [General function prediction only]
Probab=95.48 E-value=0.04 Score=74.21 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=76.9
Q ss_pred HHHHHHhhcC-CcEEEEecChHHHHHHHHHHhh---C---------------CC-------------------eEEEEec
Q psy15269 1073 IVNLLSFLEG-KRSLIFVKTYRDASRIISAVQD---S---------------NM-------------------MTIPMSN 1114 (1858)
Q Consensus 1073 l~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~---~---------------g~-------------------~~~~LHG 1114 (1858)
+..++..++. ++++|||++++.+...+..|+. . .+ .+..-|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 3344444544 8999999999999999999982 0 00 1334588
Q ss_pred CCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----EcC-----CCCChhhhhhhc
Q psy15269 1115 NGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----IYN-----LPLSINHYVFQI 1173 (1858)
Q Consensus 1115 ~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----NyD-----lP~~~e~YIHRI 1173 (1858)
+++ .++|..+-+.||+|+++||+||.-.|.|++.|.=..|| -|| .+-+.-+|+|-.
T Consensus 323 GL~---~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~ 387 (766)
T COG1204 323 GLP---REDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMA 387 (766)
T ss_pred CCC---HHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhcc
Confidence 898 99999999999999999999999999999999877766 466 555667777766
No 144
>KOG0922|consensus
Probab=95.28 E-value=0.099 Score=67.55 Aligned_cols=173 Identities=12% Similarity=0.110 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEE
Q psy15269 983 KTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQ 1062 (1858)
Q Consensus 983 ~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q 1062 (1858)
.|.|..+++.+-++|.-|-- ..| |||+. .+++. .|..+-..+.+.. ....|+.
T Consensus 179 TDiLlGlLKki~~~R~~Lkl----------------------Iim-SATld--a~kfS-~yF~~a~i~~i~G-R~fPVei 231 (674)
T KOG0922|consen 179 TDILLGLLKKILKKRPDLKL----------------------IIM-SATLD--AEKFS-EYFNNAPILTIPG-RTFPVEI 231 (674)
T ss_pred HHHHHHHHHHHHhcCCCceE----------------------EEE-eeeec--HHHHH-HHhcCCceEeecC-CCCceeE
Confidence 45566677777666665421 112 77776 33344 4445433333432 2223555
Q ss_pred EEEECChhhHHHH----HHHhhcC---CcEEEEecChHHHHHHHHHHhhC------CC--eEEEEecCCCCccHHHHHHH
Q psy15269 1063 YLIRTPKSQKIVN----LLSFLEG---KRSLIFVKTYRDASRIISAVQDS------NM--MTIPMSNNGTSWSHVECLEL 1127 (1858)
Q Consensus 1063 ~~~~v~~~~Kl~~----Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~------g~--~~~~LHG~ms~~~Q~eR~~~ 1127 (1858)
.|..-+..+-+.. .+++... +-++||-.-+++.+..++.|++. +. -+..+||.++ .+++.++
T Consensus 232 ~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~---~e~Q~rv 308 (674)
T KOG0922|consen 232 LYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALP---SEEQSRV 308 (674)
T ss_pred EeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCC---HHHhhcc
Confidence 5555444443333 3333322 67999999999999999999864 11 2467999999 9999999
Q ss_pred HHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------------------Chhhhhhhc--cCcc---eEEEEec
Q psy15269 1128 LNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------------------SINHYVFQI--AGHK---EAIAFYD 1184 (1858)
Q Consensus 1128 L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------------------~~e~YIHRI--ag~~---~aitfvt 1184 (1858)
++.-..|.-+|.+||++|.=-|-|++|.+||.-.+-. +-.+=.||. ||+. .++-+|+
T Consensus 309 F~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 309 FDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred ccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 8888888999999999999999999999999544322 224445555 3333 7888998
Q ss_pred C
Q psy15269 1185 P 1185 (1858)
Q Consensus 1185 ~ 1185 (1858)
.
T Consensus 389 e 389 (674)
T KOG0922|consen 389 E 389 (674)
T ss_pred H
Confidence 6
No 145
>KOG0951|consensus
Probab=95.23 E-value=0.044 Score=74.03 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=94.4
Q ss_pred CCCCCcH--hHHHHHHHhcCCCEEEEE-ccC-CcccEEEEEEECChhhHHHH-----------HHHhhcCCcEEEEecCh
Q psy15269 1028 DSLFSWG--DIEEESNIEVEDPIMKLV-KPS-SVHLVKQYLIRTPKSQKIVN-----------LLSFLEGKRSLIFVKTY 1092 (1858)
Q Consensus 1028 eSAT~p~--~I~~la~~~L~dpv~I~v-~~~-~~~~I~Q~~~~v~~~~Kl~~-----------Ll~lL~~~k~IIFvnTk 1092 (1858)
-|||.|. +|..+.+. +|.-+-. +++ ....++|.|+-+..+..+.. ++.-....++||||.+|
T Consensus 480 LSATLPNy~DV~~Fl~v---~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsR 556 (1674)
T KOG0951|consen 480 LSATLPNYEDVASFLRV---DPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSR 556 (1674)
T ss_pred ecccCCchhhhHHHhcc---CcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 4889884 45444333 3322211 111 22238888887753322222 12222238999999999
Q ss_pred HHHHHHHHHHhh--------------C-----------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1093 RDASRIISAVQD--------------S-----------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1093 ~~ad~L~~~L~~--------------~-----------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
+.+-+.|++++. . -+.+..-|.+|+ ..+|..+-+-|+.|+
T Consensus 557 kET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~---R~dR~~~EdLf~~g~ 633 (1674)
T KOG0951|consen 557 KETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN---RKDRELVEDLFADGH 633 (1674)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC---cchHHHHHHHHhcCc
Confidence 988777777661 0 223566799999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEE----cCC------CCChhhhhhhc
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVII----YNL------PLSINHYVFQI 1173 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VIN----yDl------P~~~e~YIHRI 1173 (1858)
+++||+|--.|+|++.|.-+.+|- ||. +.++.+-+++.
T Consensus 634 iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qml 681 (1674)
T KOG0951|consen 634 IQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQML 681 (1674)
T ss_pred eeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHH
Confidence 999999999999999998887773 653 33567777777
No 146
>KOG1477|consensus
Probab=95.21 E-value=0.011 Score=75.29 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=63.1
Q ss_pred EEEeCCceeeeCCCC-CccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEEeecCC
Q psy15269 1490 LYRAYSGNVYHSGEQ-TTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1490 ~y~~~~g~~~h~~~~-~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
+||+++|+.|-.+.. .+++|.|+.||.|+|.+|-..++-+|++||...||||-..+.. +||=|.+|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~--~~~dvg~~~~~~ 72 (469)
T KOG1477|consen 2 GYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPAL--LYHDVGVVQAGE 72 (469)
T ss_pred CCcccchhhhhhcccccccCCcCCccccccceEeccCCceeEEEEcCCcceeeecCccc--cCCCcceeeCCC
Confidence 689999999977776 9999999999999999999999999999999999999999775 888888864444
No 147
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.23 Score=67.27 Aligned_cols=129 Identities=13% Similarity=0.097 Sum_probs=90.4
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECC-hhh-HHHHHHHhh----cC--CcEEEEecChHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP-KSQ-KIVNLLSFL----EG--KRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~-~~~-Kl~~Ll~lL----~~--~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||... +++++ |+.+.-.+.+....- .|+-+|.... ..+ -...+...+ .. +.++||..-.++.+...+
T Consensus 202 SATld~--~rfs~-~f~~apvi~i~GR~f-PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 202 SATLDA--ERFSA-YFGNAPVIEIEGRTY-PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred ecccCH--HHHHH-HcCCCCEEEecCCcc-ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 777654 34544 445444444542222 2444453332 222 222233322 22 789999999999999999
Q ss_pred HHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC
Q psy15269 1101 AVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL 1164 (1858)
Q Consensus 1101 ~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~ 1164 (1858)
.|++ ..+.+..+||.++ +.++.++++--..|+-+|.+||+||.=+|=|++|.+||.-.+-+
T Consensus 278 ~L~~~~l~~~~~i~PLy~~L~---~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak 342 (845)
T COG1643 278 WLEKAELGDDLEILPLYGALS---AEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAK 342 (845)
T ss_pred HHHhccccCCcEEeeccccCC---HHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccc
Confidence 9997 4578999999999 88888888777777666999999999999999999999766654
No 148
>KOG0950|consensus
Probab=93.75 E-value=0.2 Score=66.98 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=82.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhC--------------------------------------CCeEEEEecCCCCccHHHH
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS--------------------------------------NMMTIPMSNNGTSWSHVEC 1124 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~--------------------------------------g~~~~~LHG~ms~~~Q~eR 1124 (1858)
.++||||.+|+.|+.++..+.+. -+.+...|.+++ +.+|
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT---~eER 537 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLT---SEER 537 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccc---cchH
Confidence 56999999999999988666421 122677799999 9999
Q ss_pred HHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCC----CCChhhhhhhccCcc--------eEEEEecCcccHHHH
Q psy15269 1125 LELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNL----PLSINHYVFQIAGHK--------EAIAFYDPVADIGLA 1192 (1858)
Q Consensus 1125 ~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDl----P~~~e~YIHRIag~~--------~aitfvt~~~e~~~l 1192 (1858)
+.+=..||+|-+.|++||+-.+=|.+.|..+++|-.-. +.+.-.|-+++|+++ .+|..+.+ .|...+
T Consensus 538 ~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~-~e~~~~ 616 (1008)
T KOG0950|consen 538 EIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKS-SEKKRV 616 (1008)
T ss_pred HHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeec-cchhHH
Confidence 99999999999999999999999999999999986532 124467888872222 47888887 555444
Q ss_pred HH
Q psy15269 1193 SS 1194 (1858)
Q Consensus 1193 ~~ 1194 (1858)
.+
T Consensus 617 ~~ 618 (1008)
T KOG0950|consen 617 RE 618 (1008)
T ss_pred HH
Confidence 43
No 149
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=93.42 E-value=2.1 Score=57.23 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=81.1
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC-Cc
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SS 1137 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~ 1137 (1858)
.++..+.+|..+++.-+. +..++|.|.+....+.+++.|.+.|++...|+..-. +++..+-. +.|+ -.
T Consensus 404 ~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-----~~EA~IIa-~AG~~ga 477 (764)
T PRK12326 404 RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-----AEEARIIA-EAGKYGA 477 (764)
T ss_pred ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-----HhHHHHHH-hcCCCCc
Confidence 345567788888877653 378999999999999999999999999999988643 33322221 3443 46
Q ss_pred EEEeccccccCCCCCC---------------cceEEEcCCCCCh---hhhhhhccCcc---eEEEEecC
Q psy15269 1138 LVIMTLSDFIGNDFTN---------------VEQVIIYNLPLSI---NHYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1138 ILVATDVAARGLDIp~---------------V~~VINyDlP~~~---e~YIHRIag~~---~aitfvt~ 1185 (1858)
|-|||+.|.||-||.- -=|||--..|.+. .+-.-|.|++| .+--|++-
T Consensus 478 VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSl 546 (764)
T PRK12326 478 VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSL 546 (764)
T ss_pred EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEc
Confidence 8999999999999862 2388887777765 22222445555 45555554
No 150
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=93.29 E-value=0.12 Score=57.23 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=57.6
Q ss_pred CcEEEEecChHHHHHHHHHHhhCC----CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc--ccccCCCCCC--c
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSN----MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL--SDFIGNDFTN--V 1154 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g----~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD--VAARGLDIp~--V 1154 (1858)
+.++||+++.+..+.+.+.++..+ +.+. .++ ..++...+++|++++-.||+++. ..+.|||+++ +
T Consensus 10 g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG------SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC------cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 789999999999999999998753 3222 222 45788999999999999999999 9999999986 7
Q ss_pred ceEEEcCCCC
Q psy15269 1155 EQVIIYNLPL 1164 (1858)
Q Consensus 1155 ~~VINyDlP~ 1164 (1858)
+.||-..+|.
T Consensus 83 r~vii~glPf 92 (167)
T PF13307_consen 83 RAVIIVGLPF 92 (167)
T ss_dssp EEEEEES---
T ss_pred heeeecCCCC
Confidence 7899999995
No 151
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.14 E-value=0.82 Score=64.31 Aligned_cols=283 Identities=15% Similarity=0.163 Sum_probs=148.3
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceee--------------c-Cc----cCcceEEEEEecCcE
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV--------------P-LE----AAIVSLSVSKCSEAH 280 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V--------------~-~~----~~i~~Is~Ia~G~~H 280 (1858)
..++|......-|+.+.+|++|.---...+.+...-...|.+. . |. ..+..++.-.-|..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~GQ~H 569 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQGQRH 569 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEecccccccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCCcee
Confidence 3677888888888899999999754333332222222222222 0 00 111222333457778
Q ss_pred EEEEeeCCcEEEEeCCCCCCcCCCCCcccc---cceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCC--
Q psy15269 281 VLTVTSEGEVYSWGVGEHGKLGHGNTLSQR---RPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG-- 355 (1858)
Q Consensus 281 tlaLT~dG~VysWG~N~~GQLG~g~~~~~~---~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG-- 355 (1858)
+++|+++|.=|.=|+|-.-.|=..+..-.. .|.. .. .+--|..-.++|. +|+|+.|-....+--.
T Consensus 570 s~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~-------~~--~ldl~r~G~v~L~-~G~i~~wD~ttq~W~~~~ 639 (1774)
T PF11725_consen 570 SHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAP-------HE--ILDLGRAGLVGLQ-DGKIQYWDSTTQCWKDAG 639 (1774)
T ss_pred eccccccCCccCCCCcccceeEeeccCCCCCCCCCCh-------HH--hhccccccceeec-cceEeeecCcchhhhhcc
Confidence 888877777777777654443322221111 1111 11 1234666678888 5999999654322211
Q ss_pred --------CCCCCccc--c---ccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec
Q psy15269 356 --------HGDLKSRH--T---PTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422 (1858)
Q Consensus 356 --------~G~~~~~~--~---P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l 422 (1858)
.|-...-+ . ...+.....--.|+-|.+|.++++.-.. -+..| ..++.+
T Consensus 640 ~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~-~~e~G------------------~~l~Gl 700 (1774)
T PF11725_consen 640 VKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRN-KVELG------------------DALEGL 700 (1774)
T ss_pred CcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccC-CCCCC------------------ccccCC
Confidence 11111000 0 0000001112244555555555543321 22222 123444
Q ss_pred ccccEEEEE-ecCceEEEEecCCcEEEEeCCCCCCCccccccEEec--CCCCCCEEEEEEcCceE-EEEEeCCeEEEEeC
Q psy15269 423 RKFRVRKVC-AGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVT--GLSSHQIVDVSIGDSHV-LALSQYNEVYAWGS 498 (1858)
Q Consensus 423 ~~~~Iv~Ia-aG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~--~l~~~~Iv~Ia~G~~Ht-lALt~dG~VYaWG~ 498 (1858)
.+..|..++ .+.++.+++++.|++-..- .. ..|..++ ++. ..|++|++-..|. +|++.+|++|.--.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~-------g~p~~l~~~gl~-G~ik~l~lD~~~nL~Alt~~G~Lf~~~k 771 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ-KP-------GRPVPLSRPGLS-GEIKDLALDEKQNLYALTSTGELFRLPK 771 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc-CC-------CCCccCCCCCCC-cchhheeeccccceeEecCCCceeecCH
Confidence 444555554 4668889999999987754 11 1133332 343 4799999998865 68999999998654
Q ss_pred CCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEee
Q psy15269 499 NTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTV 542 (1858)
Q Consensus 499 N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~ 542 (1858)
-.+-+.-.+....+ ...+|....+..|..+....+|...+.-
T Consensus 772 ~~WQ~~~~~~~~~~--~W~~v~lP~~~~v~~l~~~~~~~l~~~~ 813 (1774)
T PF11725_consen 772 EAWQGNAEGDQMAA--KWQKVALPDEQPVKSLRTNDDNHLSAQI 813 (1774)
T ss_pred HHhhCcccCCcccc--CceeccCCCCCchhhhhcCCCCceEEEe
Confidence 43333222222222 3344444456678889999999887763
No 152
>KOG3669|consensus
Probab=91.72 E-value=17 Score=46.94 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=45.8
Q ss_pred CCCeEEEEEcC-CEEEEEecCCcEEE-Ecc---cccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEE
Q psy15269 218 PSNIRHIEAGQ-FCTFLLDSTGGLLV-YGK---GWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYS 292 (1858)
Q Consensus 218 ~~~IkqVA~G~-~hTlaLt~dG~Vya-wG~---NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~Vys 292 (1858)
..++.+|++|. ....+++.+|.||. -|- |+.|. . =+.|+.+.....++.|+.|....-+||.+|++|.
T Consensus 226 ~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gd--s-----WkdI~tP~~a~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 226 YTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGD--S-----WKDIVTPRQALEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCccceEeecCcceEEEEeeCCcEEEEecccccCCCCc--h-----hhhccCcccccceEEEEeccceEEEEecCCcEEE
Confidence 34789999999 77788999999975 232 12221 1 1122222223336667789888899999999975
Q ss_pred E
Q psy15269 293 W 293 (1858)
Q Consensus 293 W 293 (1858)
=
T Consensus 299 r 299 (705)
T KOG3669|consen 299 R 299 (705)
T ss_pred E
Confidence 3
No 153
>KOG4439|consensus
Probab=91.37 E-value=1 Score=58.60 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=84.8
Q ss_pred EEEECChhhHHHHHHHhhcC------CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH--hcC
Q psy15269 1063 YLIRTPKSQKIVNLLSFLEG------KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF--NTG 1134 (1858)
Q Consensus 1063 ~~~~v~~~~Kl~~Ll~lL~~------~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F--r~G 1134 (1858)
.|-......|+..++..++. +++||-..=-.-.+-+...|++.|+....+||... -.+|..+++.| ++|
T Consensus 721 ~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~---vK~Rq~iv~~FN~~k~ 797 (901)
T KOG4439|consen 721 AFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVL---VKDRQEIVDEFNQEKG 797 (901)
T ss_pred hcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccc---hhHHHHHHHHHHhccC
Confidence 34444455566666555432 45555433333346667788899999999999999 99999999999 456
Q ss_pred CCcEEEec-cccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc-eEEE-EecC
Q psy15269 1135 KSSLVIMT-LSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK-EAIA-FYDP 1185 (1858)
Q Consensus 1135 ~~~ILVAT-DVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~-~ait-fvt~ 1185 (1858)
..+|++-. -..+-||+.-+.+|+|-.|+-|+| -+-|.|+|.++ +-|- |+..
T Consensus 798 ~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~ 857 (901)
T KOG4439|consen 798 GARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCK 857 (901)
T ss_pred CceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEec
Confidence 67776544 445567999999999999999998 46677777777 4443 4443
No 154
>KOG0948|consensus
Probab=91.19 E-value=1.7 Score=57.07 Aligned_cols=161 Identities=11% Similarity=0.057 Sum_probs=107.1
Q ss_pred CCCCcHhHHHHHHH---hcCCCEEEEEccCCcccEEEEEEEC---------C-----hhhHHHHHHHhhc----------
Q psy15269 1029 SLFSWGDIEEESNI---EVEDPIMKLVKPSSVHLVKQYLIRT---------P-----KSQKIVNLLSFLE---------- 1081 (1858)
Q Consensus 1029 SAT~p~~I~~la~~---~L~dpv~I~v~~~~~~~I~Q~~~~v---------~-----~~~Kl~~Ll~lL~---------- 1081 (1858)
|||.|...+ +|++ .-+.|..|....-..+.++||+++. + +.+.+......|.
T Consensus 273 SATiPNA~q-FAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~ 351 (1041)
T KOG0948|consen 273 SATIPNARQ-FAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKK 351 (1041)
T ss_pred eccCCCHHH-HHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccc
Confidence 899997643 4443 4468999988878888898887653 1 1222332222221
Q ss_pred -------------------------------CCcEEEEecChHHHHHHHHHHhhCCCe----------------------
Q psy15269 1082 -------------------------------GKRSLIFVKTYRDASRIISAVQDSNMM---------------------- 1108 (1858)
Q Consensus 1082 -------------------------------~~k~IIFvnTk~~ad~L~~~L~~~g~~---------------------- 1108 (1858)
...+|||+=+|+.|+.+|..|.+..++
T Consensus 352 ~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Lsee 431 (1041)
T KOG0948|consen 352 ANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEE 431 (1041)
T ss_pred cccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChh
Confidence 045999999999999999998765433
Q ss_pred -----------------EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE----cCCCC---
Q psy15269 1109 -----------------TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII----YNLPL--- 1164 (1858)
Q Consensus 1109 -----------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN----yDlP~--- 1164 (1858)
+..-|+++- +--.+-+---|..|-+++|.||.-.+-||+.|.=+.|+- ||=-.
T Consensus 432 Dr~LPqie~iLPLL~RGIGIHHsGLL---PIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 432 DRELPQIENILPLLRRGIGIHHSGLL---PILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred hccchHHHHHHHHHHhccccccccch---HHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 344578775 555555555699999999999999999999998877762 22111
Q ss_pred -Chhhhhhhc---cCcc-----eEEEEecCcccHHHHH
Q psy15269 1165 -SINHYVFQI---AGHK-----EAIAFYDPVADIGLAS 1193 (1858)
Q Consensus 1165 -~~e~YIHRI---ag~~-----~aitfvt~~~e~~~l~ 1193 (1858)
+.-.|||-. |++| .+|..++..-+....+
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak 546 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAK 546 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCcCCHHHHH
Confidence 235688865 3333 5677776533333333
No 155
>KOG0388|consensus
Probab=90.98 E-value=1.1 Score=58.15 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=94.7
Q ss_pred hhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc-EEEecccc
Q psy15269 1069 KSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS-LVIMTLSD 1145 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~-ILVATDVA 1145 (1858)
+-.+++.|+.-|+. .++++|+.-.+..+.+-++|...||.-..+-|... ...|..++.+|...++= .|+.|-..
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk---~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSK---ASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcch---hhHHHHHHhhccCCceEEEEEecccC
Confidence 33456666666654 79999999999999999999999999999999988 99999999999875544 48999999
Q ss_pred ccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc--eEEEEecC
Q psy15269 1146 FIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK--EAIAFYDP 1185 (1858)
Q Consensus 1146 ARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~--~aitfvt~ 1185 (1858)
+-||++...+.||=||--++| -+--||.|... +.+-+++.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999887 45667776555 55666654
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=90.92 E-value=1.8 Score=59.43 Aligned_cols=116 Identities=10% Similarity=0.027 Sum_probs=81.4
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS 1137 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~ 1137 (1858)
.++..+.+|..+++.-+. +..++|-+.+....+.|++.|++.|++...|+.... +|+.-+-. +.| .-.
T Consensus 605 ~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-----~~EAeIVA-~AG~~Ga 678 (1112)
T PRK12901 605 LVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-----QKEAEIVA-EAGQPGT 678 (1112)
T ss_pred eEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-----hhHHHHHH-hcCCCCc
Confidence 345677888888877654 378999999999999999999999999888877643 33333322 233 346
Q ss_pred EEEeccccccCCCCC--------CcceEEEcCCCCCh---hhhhhhccCcc---eEEEEecC
Q psy15269 1138 LVIMTLSDFIGNDFT--------NVEQVIIYNLPLSI---NHYVFQIAGHK---EAIAFYDP 1185 (1858)
Q Consensus 1138 ILVATDVAARGLDIp--------~V~~VINyDlP~~~---e~YIHRIag~~---~aitfvt~ 1185 (1858)
|-|||+.|+||-||. +-=|||--..|.+. .+-.-|.|++| .+--|++-
T Consensus 679 VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSL 740 (1112)
T PRK12901 679 VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSL 740 (1112)
T ss_pred EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEc
Confidence 889999999999986 33488877777664 12222345555 45555554
No 157
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=90.63 E-value=0.98 Score=61.10 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=63.9
Q ss_pred EEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcE
Q psy15269 1064 LIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138 (1858)
Q Consensus 1064 ~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~I 1138 (1858)
.++....+|...++.-+. +..++|-|.|....+.++..|.+.|++...++..-. +.+++..+=.=.-..-.|
T Consensus 401 ~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~---~~~~EA~IIA~AG~~G~V 477 (870)
T CHL00122 401 LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPE---NVRRESEIVAQAGRKGSI 477 (870)
T ss_pred eEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCc---cchhHHHHHHhcCCCCcE
Confidence 345566777777766543 378999999999999999999999999999999742 334443333322234468
Q ss_pred EEeccccccCCCCC
Q psy15269 1139 VIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1139 LVATDVAARGLDIp 1152 (1858)
-|||+.|+||-||.
T Consensus 478 TIATNMAGRGTDI~ 491 (870)
T CHL00122 478 TIATNMAGRGTDII 491 (870)
T ss_pred EEeccccCCCcCee
Confidence 99999999999974
No 158
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=90.60 E-value=1.9 Score=58.85 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=64.0
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL 1138 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I 1138 (1858)
++..+.+|...++.-+. +..++|-+.|....+.|+..|++.|++...|+..- .+++..+-. +.| .-.|
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~-----~~~EA~IIa-~AG~~GaV 500 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKY-----HEKEAEIIA-QAGRPGAL 500 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhcccc-----chhHHHHHH-cCCCCCcE
Confidence 45677888888877654 37899999999999999999999999988887754 344433333 455 4468
Q ss_pred EEeccccccCCCCC
Q psy15269 1139 VIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1139 LVATDVAARGLDIp 1152 (1858)
-|||+.|.||-||.
T Consensus 501 TIATNMAGRGTDIk 514 (913)
T PRK13103 501 TIATNMAGRGTDIL 514 (913)
T ss_pred EEeccCCCCCCCEe
Confidence 99999999999984
No 159
>KOG0947|consensus
Probab=89.75 E-value=1.8 Score=58.14 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=72.7
Q ss_pred HHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCe---------------------------------------EEE
Q psy15269 1074 VNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMM---------------------------------------TIP 1111 (1858)
Q Consensus 1074 ~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~---------------------------------------~~~ 1111 (1858)
..++..++. -.+||||=+|++||+.++.|....+. +..
T Consensus 556 l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaV 635 (1248)
T KOG0947|consen 556 LDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAV 635 (1248)
T ss_pred HHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchh
Confidence 334444443 46999999999999999999743221 455
Q ss_pred EecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC--------CChhhhhhhc---cCcc
Q psy15269 1112 MSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP--------LSINHYVFQI---AGHK 1177 (1858)
Q Consensus 1112 LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP--------~~~e~YIHRI---ag~~ 1177 (1858)
-||++- +--.+-+---|..|-++||+||.-.|.|++.|.=..|+.-=-- -.|-.|+|-. |++|
T Consensus 636 HH~GlL---PivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 636 HHGGLL---PIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hcccch---HHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 688776 6666666667999999999999999999999988888742110 1356777765 5555
No 160
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=89.54 E-value=1.4 Score=59.84 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=64.4
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC-CcE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK-SSL 1138 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~-~~I 1138 (1858)
++....+|...++.-+. +..++|-|.|.+..+.+++.|.+.|++...++..-. +.+|+..+-. ..|+ -.|
T Consensus 417 vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~---~~~~EA~IIa-~AG~~GaV 492 (939)
T PRK12902 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPE---NVEREAEIVA-QAGRKGAV 492 (939)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCc---chHhHHHHHH-hcCCCCcE
Confidence 45567788888776554 378999999999999999999999999999999732 3344443332 2444 458
Q ss_pred EEeccccccCCCCC
Q psy15269 1139 VIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1139 LVATDVAARGLDIp 1152 (1858)
-|||+.|+||-||.
T Consensus 493 TIATNMAGRGTDIk 506 (939)
T PRK12902 493 TIATNMAGRGTDII 506 (939)
T ss_pred EEeccCCCCCcCEe
Confidence 99999999999974
No 161
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.00 E-value=6.8 Score=55.85 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=122.5
Q ss_pred eEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCccccccee--------------eecCCCCC-----cEEEEEec
Q psy15269 270 SLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKL--------------IMGGLYGK-----RVTQVSAG 330 (1858)
Q Consensus 270 ~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~--------------V~~~l~~~-----~IvqVa~G 330 (1858)
....|....++-++.+.+|++|+--....+ .+.......|.. |.+++.++ -.++=..|
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~G 566 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQG 566 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCC
Confidence 555566677789999999999985433221 111111122222 22222221 13333567
Q ss_pred CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCC----
Q psy15269 331 HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG---- 406 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG---- 406 (1858)
..|+++|.++|.=|.=|+|-.-.|=..+..-...|. .+.. -..+-.|..-.++|. +|+ |+.|-....+--.
T Consensus 567 Q~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~-~p~~--~~~ldl~r~G~v~L~-~G~-i~~wD~ttq~W~~~~~k 641 (1774)
T PF11725_consen 567 QRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPP-APAP--HEILDLGRAGLVGLQ-DGK-IQYWDSTTQCWKDAGVK 641 (1774)
T ss_pred ceeeccccccCCccCCCCcccceeEeeccCCCCCCC-CCCh--HHhhccccccceeec-cce-EeeecCcchhhhhccCc
Confidence 788888888888777777754443322211100000 0001 112234555567777 485 9888543332211
Q ss_pred ------CCCCCceecc--EEeeec-ccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEE
Q psy15269 407 ------HEDTGKVTTP--KVIEAL-RKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDV 477 (1858)
Q Consensus 407 ------~g~~~~~~~P--~~V~~l-~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~I 477 (1858)
+|-..+.+.- -+|..+ -...--+|+-|.++.++++.--.-+. .=..+.++.+..|+.+
T Consensus 642 d~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~~~~r~~~e-------------~G~~l~Gl~~~~i~a~ 708 (1774)
T PF11725_consen 642 DIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFALPQRRNKVE-------------LGDALEGLEDRVITAF 708 (1774)
T ss_pred CHHHHhccccCCceEecCCceeeeecccCCCccccCCCcccccccccCCCC-------------CCccccCCCcCcceeE
Confidence 1111111100 000000 00011133444444444432221111 1133556666678877
Q ss_pred EE-cCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceE-EEeecCCCCcEEee
Q psy15269 478 SI-GDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSI-AYTVPPSNSALSSA 552 (1858)
Q Consensus 478 a~-G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~-alt~~~~dG~vy~W 552 (1858)
+. +.++.+++++.|++-+.= .-| . +.|....++++ .|+.|+.-..|.+ |++ .+|++|+-
T Consensus 709 Avv~~~~fvald~qg~lt~h~--k~g-----~-----p~~l~~~gl~G-~ik~l~lD~~~nL~Alt---~~G~Lf~~ 769 (1774)
T PF11725_consen 709 AVVNDNKFVALDDQGDLTAHQ--KPG-----R-----PVPLSRPGLSG-EIKDLALDEKQNLYALT---STGELFRL 769 (1774)
T ss_pred EEEcCCceEEeccCCcccccc--CCC-----C-----CccCCCCCCCc-chhheeeccccceeEec---CCCceeec
Confidence 75 788999999998876543 111 1 12222335544 5889999888764 565 79999964
No 162
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.92 E-value=1.8 Score=59.57 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC--cceEEE
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN--VEQVII 1159 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~--V~~VIN 1159 (1858)
.++++||+++.+..+.+++.|....+++ ...|.-. .|.+++++|++++-.||++|+...+|+|+|+ ...||-
T Consensus 647 ~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~-----~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 647 QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG-----TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc-----cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEE
Confidence 3889999999999999999998765555 4555322 2566899999998999999999999999973 445555
Q ss_pred cCCC
Q psy15269 1160 YNLP 1163 (1858)
Q Consensus 1160 yDlP 1163 (1858)
.-+|
T Consensus 721 ~kLP 724 (820)
T PRK07246 721 TRLP 724 (820)
T ss_pred ecCC
Confidence 5566
No 163
>KOG3669|consensus
Probab=88.82 E-value=10 Score=48.79 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=72.4
Q ss_pred ecCceEEEEEeCCeEEEEecCCCCCCCCCCCCc-cccccccccCCCceEEeecC-ceEEEEEcCCCEEEEEeCCCCCCCC
Q psy15269 329 AGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS-RHTPTLVTELSDVGAVSCGE-SHTLVLSQDGHTVWSMGSGNLGKLG 406 (1858)
Q Consensus 329 ~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~-~~~P~~V~~l~~I~~IAcG~-~HTlaLt~dG~tVysWG~N~~GQLG 406 (1858)
.|.....|++.+|++|.= -|.....+ -..-+.|....++.+|++|. .-..+++.+|..+|-.|-..+.+.|
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~G 262 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEG 262 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCCCC
Confidence 455666778888887751 22221111 11222334444788999999 7778999999866677877777766
Q ss_pred CCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe
Q psy15269 407 HEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 407 ~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG 450 (1858)
..=. ++.+|.... .++.|+.|....-+||.+|.+|.--
T Consensus 263 dsWk-dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfrr 300 (705)
T KOG3669|consen 263 DSWK-DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFRR 300 (705)
T ss_pred chhh-hccCccccc-----ceEEEEeccceEEEEecCCcEEEEe
Confidence 5422 444444332 2899999999999999999998753
No 164
>KOG2340|consensus
Probab=88.30 E-value=1.7 Score=55.25 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=99.8
Q ss_pred CCCCcHhHHHHHHHhcCCCE-EEEEccCCcc--------cEEEEEE--EC-----ChhhHHHHHHHhhcC-------CcE
Q psy15269 1029 SLFSWGDIEEESNIEVEDPI-MKLVKPSSVH--------LVKQYLI--RT-----PKSQKIVNLLSFLEG-------KRS 1085 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv-~I~v~~~~~~--------~I~Q~~~--~v-----~~~~Kl~~Ll~lL~~-------~k~ 1085 (1858)
|+-..+.+..+...++.|.. .|........ .|.|.+. .+ ....++.....-+-. .-+
T Consensus 476 s~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~ 555 (698)
T KOG2340|consen 476 SRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGI 555 (698)
T ss_pred HhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCce
Confidence 88888888888888877642 1222111111 1333332 12 134455555443321 457
Q ss_pred EEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc--cCCCCCCcceEEEcCCC
Q psy15269 1086 LIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF--IGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1086 IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA--RGLDIp~V~~VINyDlP 1163 (1858)
+|+.++--.--++-..|++.++..+.+|.=-+ +.+-.++-+-|-.|+.++|+-|.=|- |--+|.+|..||-|.+|
T Consensus 556 LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYss---k~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 556 LIYIPSYFDFVRVRNYMKKEEISFVMINEYSS---KSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred EEEecchhhHHHHHHHhhhhhcchHHHhhhhh---HhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 99999999989999999999888888887655 66656666679999999999998664 66789999999999999
Q ss_pred CChhhhhhhc
Q psy15269 1164 LSINHYVFQI 1173 (1858)
Q Consensus 1164 ~~~e~YIHRI 1173 (1858)
.+|.-|.-=|
T Consensus 633 ~~P~FYsEii 642 (698)
T KOG2340|consen 633 NNPHFYSEII 642 (698)
T ss_pred CCcHHHHHHH
Confidence 9998886644
No 165
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=87.95 E-value=1.8 Score=58.68 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=59.7
Q ss_pred CcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhc----CCCcEEEeccccccCCCCCC--cc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNT----GKSSLVIMTLSDFIGNDFTN--VE 1155 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~----G~~~ILVATDVAARGLDIp~--V~ 1155 (1858)
+.++||+++.+..+.++..|.. .++. ...+|+. .|.+++++|++ ++-.||++|.....|+|+|+ ++
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~------~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ------PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLT 607 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc------hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceE
Confidence 5699999999999999999974 3433 3446643 36778877764 67789999999999999976 78
Q ss_pred eEEEcCCCC
Q psy15269 1156 QVIIYNLPL 1164 (1858)
Q Consensus 1156 ~VINyDlP~ 1164 (1858)
+||-.-+|.
T Consensus 608 ~vII~kLPF 616 (697)
T PRK11747 608 QVIITKIPF 616 (697)
T ss_pred EEEEEcCCC
Confidence 998877774
No 166
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=87.53 E-value=1.9 Score=57.37 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC----CCcEEEeccccc
Q psy15269 1073 IVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG----KSSLVIMTLSDF 1146 (1858)
Q Consensus 1073 l~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G----~~~ILVATDVAA 1146 (1858)
...+..++.. ++++|-+.+.+..+.+++.|+..---...++|+.+ .|...+++||.. .-.||++|+.+-
T Consensus 459 ~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~-----~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 459 SLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN-----RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc-----cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 4445555553 78999999999999999999763223445667553 467789999884 789999999999
Q ss_pred cCCCC----------CCcceEEEcCCCCCh
Q psy15269 1147 IGNDF----------TNVEQVIIYNLPLSI 1166 (1858)
Q Consensus 1147 RGLDI----------p~V~~VINyDlP~~~ 1166 (1858)
.|+|+ +.+++||-.-+|.-+
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 99999 458999988888544
No 167
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=87.32 E-value=1.8 Score=60.56 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=61.8
Q ss_pred CcEEEEecChHHHHHHHHHHhhCC----CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCC--cce
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSN----MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTN--VEQ 1156 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g----~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~--V~~ 1156 (1858)
++++||+++.+..+.+++.|+... +.+. .+| ++ ...|.+.+++|++++-.||++|+....|+|+|+ ++.
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll-~Qg-~~---~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~ 827 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLL-AQG-VS---SGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSC 827 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEE-ecC-CC---CCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEE
Confidence 789999999999999999997542 2222 233 32 346889999999998899999999999999987 478
Q ss_pred EEEcCCCC
Q psy15269 1157 VIIYNLPL 1164 (1858)
Q Consensus 1157 VINyDlP~ 1164 (1858)
||-.-+|.
T Consensus 828 viI~kLPF 835 (928)
T PRK08074 828 LVIVRLPF 835 (928)
T ss_pred EEEecCCC
Confidence 88777775
No 168
>KOG0924|consensus
Probab=87.09 E-value=3.1 Score=54.27 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=84.9
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHH-hhc------CCcEEEEecChHHH----HH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLS-FLE------GKRSLIFVKTYRDA----SR 1097 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~-lL~------~~k~IIFvnTk~~a----d~ 1097 (1858)
||||. .++++.-|=+-|.+- +...+ -.++-.|...+-.+-.+..+. .+. .+-++||..-++.+ +.
T Consensus 507 SATm~--a~kf~nfFgn~p~f~-IpGRT-yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~ 582 (1042)
T KOG0924|consen 507 SATMD--AQKFSNFFGNCPQFT-IPGRT-YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDI 582 (1042)
T ss_pred ecccc--HHHHHHHhCCCceee-ecCCc-cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHH
Confidence 78875 455665554445432 21111 123334444554554444332 221 16799999766654 45
Q ss_pred HHHHHhhC------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC
Q psy15269 1098 IISAVQDS------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1098 L~~~L~~~------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP 1163 (1858)
+.+.|.+. ++.+..|++.++ +.-+.+++.+-..|.-+++|||++|.--|-|+++.+||...+-
T Consensus 583 i~~~l~ql~~~~~~~L~vlpiYSQLp---~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 583 IKEKLEQLDSAPTTDLAVLPIYSQLP---ADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred HHHHHHhhhcCCCCceEEEeehhhCc---hhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 55555542 678999999999 8888888887778888899999999999999999999976553
No 169
>PRK05580 primosome assembly protein PriA; Validated
Probab=86.93 E-value=2.5 Score=57.15 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
+.++||.++|+.-+..+.+.|++ .|..+..+||+++ ..+|.+.+.+.++|+.+|+|+|--+.. +.+.++.+||=-
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s---~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvD 265 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLS---DGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVD 265 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCC---HHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEE
Confidence 46899999999999999999987 5889999999999 999999999999999999999975543 567888888843
Q ss_pred C
Q psy15269 1161 N 1161 (1858)
Q Consensus 1161 D 1161 (1858)
+
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 3
No 170
>KOG0923|consensus
Probab=86.79 E-value=3.4 Score=53.81 Aligned_cols=127 Identities=12% Similarity=0.139 Sum_probs=90.0
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC-------CcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG-------KRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~-------~k~IIFvnTk~~ad~L~~~ 1101 (1858)
|||+..+ ++..-|=.-|++..-+ ..-.+.-+|-..|+.+-+++.+.-+.. +-+|||.--.+..+...+.
T Consensus 417 SAT~DAe--kFS~fFDdapIF~iPG--RRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 417 SATMDAE--KFSAFFDDAPIFRIPG--RRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKEN 492 (902)
T ss_pred ccccCHH--HHHHhccCCcEEeccC--cccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHH
Confidence 8887643 4443333456554332 222355566677777776665443221 6799999888777766666
Q ss_pred Hhh----C-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCC
Q psy15269 1102 VQD----S-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNL 1162 (1858)
Q Consensus 1102 L~~----~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDl 1162 (1858)
|++ . .+-+..||.+++ +..+.++++--..|.-+|.+||++|.--|-|++|.+||.=.+
T Consensus 493 l~~~~~~LGski~eliv~PiYaNLP---selQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf 559 (902)
T KOG0923|consen 493 LKERCRRLGSKIRELIVLPIYANLP---SELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGF 559 (902)
T ss_pred HHHHHHHhccccceEEEeeccccCC---hHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcc
Confidence 653 2 344888999999 888999988888898999999999999999999999995443
No 171
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=86.45 E-value=1.8 Score=58.34 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCc------------------cHHHHHHHHHHHhc-CCCc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSW------------------SHVECLELLNLFNT-GKSS 1137 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~------------------~Q~eR~~~L~~Fr~-G~~~ 1137 (1858)
..|++|||.++..|..+.+.|.+. +..+..++++.+.. ....+.+++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 378999999999999999998653 35677777765410 00123478999987 6889
Q ss_pred EEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1138 LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1138 ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|||.+|..--|.|.|.++.++=.- |-.-..++|-|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldK-plk~h~LlQai 628 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDK-PLKYHGLLQAI 628 (667)
T ss_pred EEEEEcccccccCCCccceEEEec-cccccHHHHHH
Confidence 999999999999999999887544 43333455544
No 172
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=86.38 E-value=2.6 Score=57.02 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=62.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc-cCCCCCCcc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF-IGNDFTNVE 1155 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA-RGLDIp~V~ 1155 (1858)
.+.+++|.++|+.-|...++.+++ .|+++..+||+++ ..+|.+.++..++|+..|+|+|...- ..+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~---~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLK---GKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCC---HHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 347899999999999888777765 4799999999999 99999999999999999999997432 345566666
Q ss_pred eEE
Q psy15269 1156 QVI 1158 (1858)
Q Consensus 1156 ~VI 1158 (1858)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 666
No 173
>KOG0920|consensus
Probab=85.86 E-value=1.7 Score=59.24 Aligned_cols=239 Identities=12% Similarity=0.076 Sum_probs=134.9
Q ss_pred HHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhC-------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1072 KIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDS-------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1072 Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~-------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
-+..|+..+.. +.+|||-........+.+.|... .+-+..+|+.|+ ..++..++++--.|.-+|++
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~---s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIP---SEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCC---hHHHHHhcCCCCCCcchhhh
Confidence 34455554443 77999999999999999999742 366888999999 77888888888889999999
Q ss_pred eccccccCCCCCCcceEEE--------cCCCCCh----hhhhhhc------cCcc-----eEEEEecCcccHHHHHHHHH
Q psy15269 1141 MTLSDFIGNDFTNVEQVII--------YNLPLSI----NHYVFQI------AGHK-----EAIAFYDPVADIGLASSLIK 1197 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VIN--------yDlP~~~----e~YIHRI------ag~~-----~aitfvt~~~e~~~l~~Ie~ 1197 (1858)
||++|.=.|=|+||-+||. ||.-.+. +++|-|. |++| .++.+++... + ++
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~----~---~~ 548 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSR----Y---EK 548 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhh----h---hh
Confidence 9999999999999999995 4443332 4444443 3333 6888988611 1 11
Q ss_pred HHhhcCCCCCCCccccC-chhhHhhhhcHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccch
Q psy15269 1198 LLEYSNKHVPTHPHANG-NTLLREVSSNMIHILAIACANHIEDLNESVRSKLTSCLHVYLETLLPPSDTQGNLEHDVHNH 1276 (1858)
Q Consensus 1198 ~l~~~~q~ip~~~~~~~-~~~~kia~~rl~~il~~aa~~~ed~l~~~v~~all~ll~~ql~~lL~~~~~~~~~~~~~~~~ 1276 (1858)
.+. ...+|+....-. ...+++..-....+.+.- +..-+.-+.+.+..++..|.+ -..|...+ ..
T Consensus 549 ~~~--~~q~PEilR~pL~~l~L~iK~l~~~~~~~fL-skaldpP~~~~v~~a~~~L~~--igaL~~~e-------~L--- 613 (924)
T KOG0920|consen 549 LML--AYQLPEILRTPLEELCLHIKVLEQGSIKAFL-SKALDPPPADAVDLAIERLKQ--IGALDESE-------EL--- 613 (924)
T ss_pred ccc--ccCChHHHhChHHHhhheeeeccCCCHHHHH-HHhcCCCChHHHHHHHHHHHH--hccccCcc-------cc---
Confidence 111 022232111100 011111111111111111 111223334444444444432 11122222 11
Q ss_pred hhhhccchhhhhhhhhhhhhhHHhhccCchhHHHHHHHhccCCCcchhhhHHHHHHHHHHHH
Q psy15269 1277 TEERNLAYYLSFIYSLTSVSTVCQLLATQPWIQSLLYLLSISPSGLCKLNLLRARLLTLNLL 1338 (1858)
Q Consensus 1277 ~~E~~l~~flvf~r~~~s~~~~~~~~~~~~wi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 1338 (1858)
+.||-||.-+=.=.-...+--..+-.+=+|+.++++...+...|.+..+-.+=.+-...
T Consensus 614 ---T~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~ 672 (924)
T KOG0920|consen 614 ---TPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAK 672 (924)
T ss_pred ---hHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHH
Confidence 34565555444333333344445566677888877777777777776665544443333
No 174
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=85.03 E-value=3.2 Score=55.79 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=70.4
Q ss_pred HHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCCCccHHHHHHHHHHHhcCCC-cEEEeccccccCCCC
Q psy15269 1076 LLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGTSWSHVECLELLNLFNTGKS-SLVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1076 Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~-~ILVATDVAARGLDI 1151 (1858)
+..+++. ++++||+.+.+..+.+++.+...... ....+|+- .+...+++|+++.- .++|+|...++|+|+
T Consensus 471 i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~------~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 471 LREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED------EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC------cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 3444443 68999999999999999999987653 45556644 46689999988665 899999999999999
Q ss_pred CCc--ceEEEcCCCCC-hhhhhhhc
Q psy15269 1152 TNV--EQVIIYNLPLS-INHYVFQI 1173 (1858)
Q Consensus 1152 p~V--~~VINyDlP~~-~e~YIHRI 1173 (1858)
++= ..||-..+|.- +++.+...
T Consensus 545 ~g~~l~~vvI~~lPfp~p~dp~~~~ 569 (654)
T COG1199 545 PGDALRLVVIVGLPFPNPDDPLLKA 569 (654)
T ss_pred CCCCeeEEEEEecCCCCCCCHHHHH
Confidence 765 78888888864 55555543
No 175
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=83.87 E-value=0.27 Score=53.36 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=79.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCch-hhhhhhhhccccccccccccc--Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPST-AIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~-q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
.+.++-|+++|+-+..+.+..+.....+ +...+.||..... +...+....++++.||.++++ ....
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~ 114 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNTNV-----------RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK 114 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTTTS-----------SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS
T ss_pred eEEEEeeccccccccccccccccccccc-----------ccccccccccccccccccccccccccccCcchhhccccccc
Confidence 3578999999999999888777776444 4455678876442 233333468899999999986 2211
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH--HHHHhhhccCCCCccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF--RAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~--RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
.+......+++||++. +...++... +..|++.+.+. .+.++.
T Consensus 115 ~~~~~~~~iViDE~h~----------l~~~~~~~~----~~~i~~~~~~~~~~~~i~~---------------------- 158 (169)
T PF00270_consen 115 INISRLSLIVIDEAHH----------LSDETFRAM----LKSILRRLKRFKNIQIILL---------------------- 158 (169)
T ss_dssp STGTTESEEEEETHHH----------HHHTTHHHH----HHHHHHHSHTTTTSEEEEE----------------------
T ss_pred cccccceeeccCcccc----------cccccHHHH----HHHHHHHhcCCCCCcEEEE----------------------
Confidence 1333356667888877 555555555 77787777543 233444
Q ss_pred ccCCCCCCcHhHHHH
Q psy15269 1025 NSTDSLFSWGDIEEE 1039 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~l 1039 (1858)
|||+++.++++
T Consensus 159 ----SAT~~~~~~~~ 169 (169)
T PF00270_consen 159 ----SATLPSNVEKL 169 (169)
T ss_dssp ----ESSSTHHHHHH
T ss_pred ----eeCCChhHhhC
Confidence 99999777764
No 176
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.77 E-value=4.1 Score=53.23 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=64.6
Q ss_pred CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII 1159 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN 1159 (1858)
+.++||-+++..-+..+++.|++ .|..+..+||+++ ..+|.+++.+.++|+.+|+|+|-.+.. +.+.++.+||=
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~---~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLS---DSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCC---HHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 36899999999999999999986 5788999999999 999999999999999999999987654 56788888884
No 177
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=82.30 E-value=1.5 Score=39.11 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.8
Q ss_pred eEecCCCceE-EEEecCCeEEEecCCC
Q psy15269 1412 VSFDKEKCVC-CTVECGGQSLIHGPGT 1437 (1858)
Q Consensus 1412 f~~D~~~~~~-~~~~~~~~~~~~~~~~ 1437 (1858)
++|||+++|. +++++|+..|+++...
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~~~~~ 27 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRYSEQP 27 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE-SST
T ss_pred CEECcccCCCCeEECCCCeEEEEccCC
Confidence 4799999999 9999999999987744
No 178
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=81.59 E-value=3.6 Score=55.21 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=67.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHh--cCCCcEEEeccccccCCCCCCcc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFN--TGKSSLVIMTLSDFIGNDFTNVE 1155 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr--~G~~~ILVATDVAARGLDIp~V~ 1155 (1858)
.|+||||.+...|+++.+.|... |--+..|.|+-. +.+ ..++.|. +.--+|-|+.|+..=|+|+|.|-
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~---~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE---QAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch---hhH--HHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 68999999999999999999863 344778888765 443 3566674 45567999999999999999999
Q ss_pred eEEEcCCCCChhhhhhhc
Q psy15269 1156 QVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1156 ~VINyDlP~~~e~YIHRI 1173 (1858)
.+|=+-.=.+..-|-|-+
T Consensus 502 nlVF~r~VrSktkF~QMv 519 (875)
T COG4096 502 NLVFDRKVRSKTKFKQMV 519 (875)
T ss_pred eeeehhhhhhHHHHHHHh
Confidence 888666556666666655
No 179
>KOG0943|consensus
Probab=80.50 E-value=0.41 Score=63.83 Aligned_cols=131 Identities=20% Similarity=0.292 Sum_probs=86.8
Q ss_pred cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCC--CCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeE
Q psy15269 266 AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGH--GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLL 343 (1858)
Q Consensus 266 ~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~--g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~V 343 (1858)
.+..++.+|.+-.+..+||..+|++|.|-....--+-. ....+...|..-...+.+.+|+..++..--.-++|++|+|
T Consensus 371 ddan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 371 DDANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 34456666766677788999999999998865544333 1222334455444347889999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCC--ccccccccccCC-CceEEeecCceEEEEEcCCCEEEEEeCCC
Q psy15269 344 YTWGEGDHGRLGHGDLK--SRHTPTLVTELS-DVGAVSCGESHTLVLSQDGHTVWSMGSGN 401 (1858)
Q Consensus 344 YtWG~N~~GQLG~G~~~--~~~~P~~V~~l~-~I~~IAcG~~HTlaLt~dG~tVysWG~N~ 401 (1858)
-+|=+- +|.|-.. ....-+.+..-. -+++..|...|+++...++ .+|.||---
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dn-iihWcGiVP 506 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDN-IIHWCGIVP 506 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhc-eeeEEeeee
Confidence 999432 2222111 111122222111 1567788889999999988 699999433
No 180
>KOG0386|consensus
Probab=80.39 E-value=11 Score=51.69 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=83.6
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC---cEEEeccccccCCCCCCcceEEE
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS---SLVIMTLSDFIGNDFTNVEQVII 1159 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~---~ILVATDVAARGLDIp~V~~VIN 1159 (1858)
.+++.|+.-.+--+-+-.+|.-.++.-..+-|.-. ..+|-..++.|..-.. -.|..|-.+..|++....+.||-
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK---~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTK---VEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcc---hhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 78999999888889999999988999899999887 8999999999976543 35899999999999999999999
Q ss_pred cCCCCCh------hhhhhhccCcc--eEEEEec
Q psy15269 1160 YNLPLSI------NHYVFQIAGHK--EAIAFYD 1184 (1858)
Q Consensus 1160 yDlP~~~------e~YIHRIag~~--~aitfvt 1184 (1858)
||--++| .+-.|||+.+. +.+-+++
T Consensus 804 fdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 804 FDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred ecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999887 66778885555 4444444
No 181
>KOG2243|consensus
Probab=79.88 E-value=1.9 Score=58.06 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=0.0
Q ss_pred EEEeeccc---cCCCCCCCceeEEEeCCceeeeCCCC-CccCCC---cCCCCEEEEEEeccCceEEEEeCCccccccccC
Q psy15269 1471 GVTRWPIR---DYNHRTTGDMWLYRAYSGNVYHSGEQ-TTMLPS---FTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQD 1543 (1858)
Q Consensus 1471 Gva~~~~~---~~~~~~~~~~W~y~~~~g~~~h~~~~-~~~~~~---~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~ 1543 (1858)
|-+..|=- +.+-|--++.+-|--+.=+++.+.-. ...-|. ....|+|.|+||+..-.+||-+||++.---|+|
T Consensus 708 gyap~pggge~wggngvgddl~sygfdglhlwsg~i~r~vas~nqhllrsddvisccldl~~psisfringqpvqgmfen 787 (5019)
T KOG2243|consen 708 GYAPCPGGGEEWGGNGVGDDLFSYGFDGLHLWSGCIARAVASPNQHLLRSDDVISCCLDLGAPSISFRINGQPVQGMFEN 787 (5019)
T ss_pred CCCCCCCCcccccCCCccchhhhcCCCcchhhcccchhhhcChhhhhhcccchhhhhhhcCCCceEEEECCccchhHHhc
Q ss_pred CCCCCceeEEEEEeecCCCCCeEEEE------EeeeccCCCCCCC
Q psy15269 1544 LDTSAPLYPIVLFYSTNANGEKVKIT------DMTVCETPRDLLC 1582 (1858)
Q Consensus 1544 l~~~~~lyP~Vs~y~~~~~~~~v~~~------~~~~~~~p~~~~~ 1582 (1858)
....--|||.+|| +. |-||+.. ..+++ +|..+.|
T Consensus 788 fn~dglffpv~sf---sa-gikvrfllggrhgefkfl-pp~gyap 827 (5019)
T KOG2243|consen 788 FNIDGLFFPVMSF---SA-GIKVRFLLGGRHGEFKFL-PPPGYAP 827 (5019)
T ss_pred CCCcceeeeeEee---cc-CeEEEEEecccccceeec-CCCCCcc
No 182
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=79.85 E-value=6 Score=55.17 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=61.8
Q ss_pred hcCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-ccccCCCCCCc
Q psy15269 1080 LEGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-SDFIGNDFTNV 1154 (1858)
Q Consensus 1080 L~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-VAARGLDIp~V 1154 (1858)
..+.+++|.++|+.-|+..++.+++ .++.+..++|..+ ..++.+.++++++|+++|+|+|. +..+.+.+.++
T Consensus 498 ~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~---~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L 574 (926)
T TIGR00580 498 LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRS---AKEQNEILKELASGKIDILIGTHKLLQKDVKFKDL 574 (926)
T ss_pred HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEecccc---HHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccC
Confidence 3458899999999999998888775 3678889999998 88999999999999999999997 33344556666
Q ss_pred ceEE
Q psy15269 1155 EQVI 1158 (1858)
Q Consensus 1155 ~~VI 1158 (1858)
.+||
T Consensus 575 ~llV 578 (926)
T TIGR00580 575 GLLI 578 (926)
T ss_pred CEEE
Confidence 6555
No 183
>KOG1015|consensus
Probab=78.91 E-value=4.2 Score=54.64 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=82.1
Q ss_pred hhhHHHHHHHhhcC-----CcEEEEecChHHHHHHHHHHhh----------------------CCCeEEEEecCCCCccH
Q psy15269 1069 KSQKIVNLLSFLEG-----KRSLIFVKTYRDASRIISAVQD----------------------SNMMTIPMSNNGTSWSH 1121 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~-----~k~IIFvnTk~~ad~L~~~L~~----------------------~g~~~~~LHG~ms~~~Q 1121 (1858)
-.-|+..|+++|+. ++.+||..+-...+.+-.+|.. .|..-..|-|.-. -
T Consensus 1124 ~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~---s 1200 (1567)
T KOG1015|consen 1124 HSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT---S 1200 (1567)
T ss_pred cCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc---H
Confidence 34577788888863 8999999999999998888862 1455677788777 8
Q ss_pred HHHHHHHHHHhc---CCCc-EEEeccccccCCCCCCcceEEEcCCCCChhhhhhh
Q psy15269 1122 VECLELLNLFNT---GKSS-LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQ 1172 (1858)
Q Consensus 1122 ~eR~~~L~~Fr~---G~~~-ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHR 1172 (1858)
.+|.+..++|.+ -+.+ .||.|-+.+-||+.-..+-||-||..|+|..=++-
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQS 1255 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQS 1255 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHH
Confidence 899999999965 3344 48999999999999999999999999999655543
No 184
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.13 E-value=6.3 Score=53.61 Aligned_cols=78 Identities=18% Similarity=0.317 Sum_probs=61.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCC-------eEEEEecCCCCccHHHHHHHHHHHhc----CCCcEEEec--cccccCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNM-------MTIPMSNNGTSWSHVECLELLNLFNT----GKSSLVIMT--LSDFIGN 1149 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~-------~~~~LHG~ms~~~Q~eR~~~L~~Fr~----G~~~ILVAT--DVAARGL 1149 (1858)
+.++||+++...-+.+.+.+++.|+ ......+. . ..++.+++++|++ ++-.||+|+ ...+.||
T Consensus 523 gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~---~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 523 DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-D---AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-C---cchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 7799999999999999998876543 22333332 2 3578899999965 455699999 8999999
Q ss_pred CCCC--cceEEEcCCCC
Q psy15269 1150 DFTN--VEQVIIYNLPL 1164 (1858)
Q Consensus 1150 DIp~--V~~VINyDlP~ 1164 (1858)
|+++ ++.||-..+|.
T Consensus 599 Df~~~~~r~ViivGlPf 615 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ccCCCCCcEEEEEccCC
Confidence 9987 68888899997
No 185
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=77.83 E-value=4 Score=55.03 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=59.2
Q ss_pred CcEEEEecChHHHHHHHHHHhh--CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD--SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIY 1160 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~--~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINy 1160 (1858)
+..|+++- -.++++.+.|++ -+.++..+-+|.+ +.+..=...++.|.+|+.+|||-|-..|.|.|+|+|++|.=.
T Consensus 483 s~~L~~~G--~GterieeeL~~~FP~~rv~r~d~Dtt-~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl 559 (730)
T COG1198 483 SEHLRAVG--PGTERIEEELKRLFPGARIIRIDSDTT-RRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVL 559 (730)
T ss_pred CCeeEEec--ccHHHHHHHHHHHCCCCcEEEEccccc-cchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEE
Confidence 44677763 356677777766 3788999999987 224445678999999999999999999999999999987643
Q ss_pred C
Q psy15269 1161 N 1161 (1858)
Q Consensus 1161 D 1161 (1858)
|
T Consensus 560 ~ 560 (730)
T COG1198 560 D 560 (730)
T ss_pred e
Confidence 3
No 186
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=77.24 E-value=7.6 Score=52.18 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=60.4
Q ss_pred CCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccccc-CCCCCCcce
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI-GNDFTNVEQ 1156 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR-GLDIp~V~~ 1156 (1858)
+.+++|-++|+.-|...++.+++ .|+++..+||+++ ..+|...++..++|+..|+|+|...-. .+++.++.+
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~---~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLK---GKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLAL 360 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCC---HHHHHHHHHHHhCCCCCEEEecHHHHhccccccccce
Confidence 47899999999999988877765 4799999999998 899999999999999999999985433 244455555
Q ss_pred EE
Q psy15269 1157 VI 1158 (1858)
Q Consensus 1157 VI 1158 (1858)
||
T Consensus 361 vV 362 (630)
T TIGR00643 361 VI 362 (630)
T ss_pred EE
Confidence 54
No 187
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=76.09 E-value=6.7 Score=53.85 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=30.0
Q ss_pred ECChhhHHHHHHHhhc-----------CCcEEEEecChHHHHHHHHHHhh
Q psy15269 1066 RTPKSQKIVNLLSFLE-----------GKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1066 ~v~~~~Kl~~Ll~lL~-----------~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
..||.+++..+++-+. .+++||||+.+++|..|.+.|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4677777777765432 15799999999999999998865
No 188
>KOG1123|consensus
Probab=75.71 E-value=11 Score=47.93 Aligned_cols=109 Identities=14% Similarity=0.125 Sum_probs=78.6
Q ss_pred hhhHHHHHHHhhc--CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc-CCCcEEEecccc
Q psy15269 1069 KSQKIVNLLSFLE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT-GKSSLVIMTLSD 1145 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~--~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~-G~~~ILVATDVA 1145 (1858)
+..--..|+++.. ++|+|||.-..-...+.+-.|.+ -.|.|.-+ |.+|.++|+.|+. .+++-+.-+-|+
T Consensus 528 KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Ts---q~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 528 KFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTS---QNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCc---hhHHHHHHHhcccCCccceEEEeecc
Confidence 3444445666554 48999999777766666666644 25789888 9999999999975 578889999999
Q ss_pred ccCCCCCCcceEEEcCCC----CChhhhhhhc--cCcc-------eEEEEecC
Q psy15269 1146 FIGNDFTNVEQVIIYNLP----LSINHYVFQI--AGHK-------EAIAFYDP 1185 (1858)
Q Consensus 1146 ARGLDIp~V~~VINyDlP----~~~e~YIHRI--ag~~-------~aitfvt~ 1185 (1858)
---||+|..+..|+..-- +.-..-+-|| |.++ --+++|..
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~ 652 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSK 652 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeec
Confidence 999999999999986533 2335556666 3332 23567765
No 189
>PRK10689 transcription-repair coupling factor; Provisional
Probab=75.05 E-value=10 Score=54.27 Aligned_cols=76 Identities=17% Similarity=0.069 Sum_probs=60.8
Q ss_pred hcCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-ccccCCCCCCc
Q psy15269 1080 LEGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-SDFIGNDFTNV 1154 (1858)
Q Consensus 1080 L~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-VAARGLDIp~V 1154 (1858)
.++.+++|-++|+.-|...++.+++ .++.+..++|..+ ..++.+++++.++|.++|+|+|. +..+.+.+.++
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s---~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L 723 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRS---AKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDL 723 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCC---HHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhC
Confidence 3458999999999999998888775 3567888999998 99999999999999999999996 33334455555
Q ss_pred ceEE
Q psy15269 1155 EQVI 1158 (1858)
Q Consensus 1155 ~~VI 1158 (1858)
.++|
T Consensus 724 ~lLV 727 (1147)
T PRK10689 724 GLLI 727 (1147)
T ss_pred CEEE
Confidence 5555
No 190
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=73.36 E-value=9.2 Score=52.49 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=53.4
Q ss_pred HHHhhcCCcEEEEecChHHHHHHHHHHhhC----C-CeEEE-EecCCCCccHHHHHHHHHHHhcCCCcEEEecccc
Q psy15269 1076 LLSFLEGKRSLIFVKTYRDASRIISAVQDS----N-MMTIP-MSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD 1145 (1858)
Q Consensus 1076 Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~----g-~~~~~-LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA 1145 (1858)
++-..++.+++|-++|.--+...++.|++. | +.+.. +||.|+ .+++..++++|++|..+|||+|.-.
T Consensus 119 l~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~---~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 119 LYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALP---TKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccc---hHHHHHHHHHHhcCCccEEEEeHHH
Confidence 333345588999999988888888887753 3 43333 999999 9999999999999999999999854
No 191
>KOG0943|consensus
Probab=73.21 E-value=0.49 Score=63.13 Aligned_cols=128 Identities=18% Similarity=0.139 Sum_probs=84.6
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEccc-ccCCCC----CCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEe
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKG-WLGLAN----TTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWG 294 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~N-qLGlg~----~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG 294 (1858)
+++.|.+-.+..+++..+|++|.|-+. .-|+.+ ..+...|..-.+.....+|...++..-..-++|++|+|-+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 366677777788899999999999875 334333 223334444333333456666777777788999999999994
Q ss_pred CCCCCCcCCCCCc--ccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCC
Q psy15269 295 VGEHGKLGHGNTL--SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353 (1858)
Q Consensus 295 ~N~~GQLG~g~~~--~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQ 353 (1858)
. .+|.|-.. ....-+++. ..+..+++-.|...|.++...|+-+|-||---+.+
T Consensus 455 D----EcgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 D----ECGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred h----hhhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 3 22222221 222333443 46677888889999999999999999999644433
No 192
>KOG0315|consensus
Probab=72.25 E-value=1.7e+02 Score=34.94 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=77.6
Q ss_pred CcEEEE--EecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCce--EEeecCceEEEEEcCCCEEEEE
Q psy15269 322 KRVTQV--SAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG--AVSCGESHTLVLSQDGHTVWSM 397 (1858)
Q Consensus 322 ~~IvqV--a~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~--~IAcG~~HTlaLt~dG~tVysW 397 (1858)
++|..| .|-....+-=.+||.+-.|--.. +. .+........|. -+.-...|-+.-+.+|+ |++|
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~--------~qR~~~~~spVn~vvlhpnQteLis~dqsg~-irvW 151 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LS--------CQRNYQHNSPVNTVVLHPNQTELISGDQSGN-IRVW 151 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC---cc--------cchhccCCCCcceEEecCCcceEEeecCCCc-EEEE
Confidence 344444 44445555556788888886432 11 111122222232 23334456666788997 9999
Q ss_pred eCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCc--eEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEE
Q psy15269 398 GSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTS--FSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIV 475 (1858)
Q Consensus 398 G~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~--hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv 475 (1858)
--.+ ........|..- ..|.++..... ..++.++.|+.|+|-+-.+... ....|..--......|.
T Consensus 152 Dl~~------~~c~~~liPe~~-----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 152 DLGE------NSCTHELIPEDD-----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-SELEPVHKFQAHNGHIL 219 (311)
T ss_pred EccC------CccccccCCCCC-----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-ccceEhhheecccceEE
Confidence 6332 222233334322 34666665554 5567889999999993332222 12223211111122333
Q ss_pred EEE--EcCceEEEEEeCCeEEEEeCCC
Q psy15269 476 DVS--IGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 476 ~Ia--~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
+.- -+..|.+.-.+|-.|+.|-..+
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCC
Confidence 332 2333444444566778877544
No 193
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=71.75 E-value=12 Score=40.88 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCC-cEEEeccccccCCCCCC--cceEEEcCCCC
Q psy15269 1121 HVECLELLNLFNTGKS-SLVIMTLSDFIGNDFTN--VEQVIIYNLPL 1164 (1858)
Q Consensus 1121 Q~eR~~~L~~Fr~G~~-~ILVATDVAARGLDIp~--V~~VINyDlP~ 1164 (1858)
..+...++++|++..- .||++|.-.++|+|+++ ++.||-..+|.
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 5568999999987543 79999988999999987 46888888885
No 194
>KOG0926|consensus
Probab=71.30 E-value=12 Score=49.96 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1121 HVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1121 Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
..++.++++.-..|.--+.|||+||.--|-||+|.+||...
T Consensus 616 ~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~G 656 (1172)
T KOG0926|consen 616 TEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCG 656 (1172)
T ss_pred HHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEecc
Confidence 34455555555667667899999999999999999999543
No 195
>PHA02713 hypothetical protein; Provisional
Probab=70.89 E-value=23 Score=47.02 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=29.2
Q ss_pred cceeeCCeEEEEcCCCCCCCCcCCCCC--cccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcc
Q psy15269 182 DISVAHSKVYTWGCNLHHQILDEVRGK--CSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGK 245 (1858)
Q Consensus 182 ~~a~s~g~Vy~WGsN~~GQLG~g~~~~--~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~ 245 (1858)
..+..++.||+.|....+. ..... ...|..- ....+..+..+..+..+..-+|++|++|-
T Consensus 298 ~~a~l~~~IYviGG~~~~~---~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~~~~~~~g~IYviGG 359 (557)
T PHA02713 298 ASAIVDNEIIIAGGYNFNN---PSLNKVYKINIENK-IHVELPPMIKNRCRFSLAVIDDTIYAIGG 359 (557)
T ss_pred EEEEECCEEEEEcCCCCCC---CccceEEEEECCCC-eEeeCCCCcchhhceeEEEECCEEEEECC
Confidence 4456789999999532111 00111 1112111 11122222234444445566899999984
No 196
>KOG0701|consensus
Probab=70.13 E-value=2.2 Score=61.15 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=75.9
Q ss_pred EEEEecChHHHHHHHHHHhhCC-CeEEEEecCCCC--------ccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcc
Q psy15269 1085 SLIFVKTYRDASRIISAVQDSN-MMTIPMSNNGTS--------WSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVE 1155 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~~g-~~~~~LHG~ms~--------~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~ 1155 (1858)
.|+||+.+..+..+.+.+++.. +....+-|.+.. ..+..+.+++..|+.-..++|++|-++-.|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 6999999999999999988642 233335554331 1134478899999999999999999999999999999
Q ss_pred eEEEcCCCCChhhhhhhccCcce
Q psy15269 1156 QVIIYNLPLSINHYVFQIAGHKE 1178 (1858)
Q Consensus 1156 ~VINyDlP~~~e~YIHRIag~~~ 1178 (1858)
.|+.+|.|.....|+++.+++..
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hheeccCcchHHHHHHhhccccc
Confidence 99999999999999999855443
No 197
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=69.77 E-value=3.5 Score=44.89 Aligned_cols=133 Identities=18% Similarity=0.125 Sum_probs=85.6
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhc-ccccccccccccCcc--cc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFV-RDMRHVSNNILMSPN--YE 947 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v-~~l~~t~~~ll~~~~--~~ 947 (1858)
+.++.|+++++.++-..+..+....+ .......+|........++.... ++++.|+..+.+... ..
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~ 125 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSLG-----------LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLL 125 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCC-----------eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCc
Confidence 47788999999888776655544333 12233444544444555555544 677888777775221 12
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
........++||++. +....+... +..+++.+++....++.
T Consensus 126 ~~~~~~~iIiDE~h~----------~~~~~~~~~----~~~~~~~~~~~~~~v~~------------------------- 166 (201)
T smart00487 126 ELSNVDLVILDEAHR----------LLDGGFGDQ----LEKLLKLLPKNVQLLLL------------------------- 166 (201)
T ss_pred CHhHCCEEEEECHHH----------HhcCCcHHH----HHHHHHhCCccceEEEE-------------------------
Confidence 223344577888866 443344444 77777777555666666
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEcc
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKP 1054 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~ 1054 (1858)
|||+++.+.+.+..++.+++.+..+.
T Consensus 167 -saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 167 -SATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred -ecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 99999999999999999888887764
No 198
>KOG0646|consensus
Probab=68.70 E-value=2e+02 Score=37.03 Aligned_cols=207 Identities=14% Similarity=0.190 Sum_probs=99.2
Q ss_pred EEEEEecC--ceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEE--EcCCCEEEEEeC
Q psy15269 324 VTQVSAGH--SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVL--SQDGHTVWSMGS 399 (1858)
Q Consensus 324 IvqVa~G~--~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaL--t~dG~tVysWG~ 399 (1858)
+..+++.. ++.++=|..|++|.|--+. |.|=. +.-.....|+.+...++-+.++ .+||. |++|=-
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~---------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~-V~vW~l 152 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS-GILLN---------VLSAHYQSITCLKFSDDGSHIITGSKDGA-VLVWLL 152 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc-ccHHH---------HHHhhccceeEEEEeCCCcEEEecCCCcc-EEEEEE
Confidence 44555432 3444446889999996543 32200 0011123455544444434444 47884 998853
Q ss_pred CCCCCCCCCCCCceeccEEeeecccccEEEEEecCce--E--EEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEE
Q psy15269 400 GNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSF--S--VALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIV 475 (1858)
Q Consensus 400 N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~h--S--lALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv 475 (1858)
-.- -..+......|..+-.-....|+++.+|..- + +-...|..+-+|-+..+.--.....|..+ +-+
T Consensus 153 ~~l---v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si------~av 223 (476)
T KOG0646|consen 153 TDL---VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSI------KAV 223 (476)
T ss_pred Eee---cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcc------eeE
Confidence 221 0111111233433333334568888877652 2 22334666667764433322222233322 234
Q ss_pred EEEEcCceEEEEEeCCeEEEEeCCC-CCCC-CCCCCCCCcccCeeeecC----CCceEEEEEecCcceEEEeecCCCCcE
Q psy15269 476 DVSIGDSHVLALSQYNEVYAWGSNT-MGQC-GQDNFSNPVDQPSKVVGL----EDVCVRQICAGSLFSIAYTVPPSNSAL 549 (1858)
Q Consensus 476 ~Ia~G~~HtlALt~dG~VYaWG~N~-~GQL-G~G~~~~~vs~P~~V~~L----~~~~I~~Ia~G~~hS~alt~~~~dG~v 549 (1858)
.+.-+..++++=+++|.+|..-.+. .||- |.... .....-+.+..+ ....|.-.+-..+-|+.+. ...||+|
T Consensus 224 ~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k-~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS-Gd~dg~V 301 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK-GRHEENTQINVLVGHENESAITCLAISTDGTLLLS-GDEDGKV 301 (476)
T ss_pred EEcccccEEEecCCcceEEeeehhcCCccccccccc-ccccccceeeeeccccCCcceeEEEEecCccEEEe-eCCCCCE
Confidence 4555677777778888888765432 1221 11100 000111222222 2234555555555666554 4578888
Q ss_pred Eee
Q psy15269 550 SSA 552 (1858)
Q Consensus 550 y~W 552 (1858)
..|
T Consensus 302 cvW 304 (476)
T KOG0646|consen 302 CVW 304 (476)
T ss_pred EEE
Confidence 888
No 199
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=68.27 E-value=11 Score=41.00 Aligned_cols=66 Identities=18% Similarity=0.309 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCC----eEEEEecCCCCccHHHHHHHHHHHhcCCC---cEEEeccc--cccCCCCCC--cceEEEcCCC
Q psy15269 1095 ASRIISAVQDSNM----MTIPMSNNGTSWSHVECLELLNLFNTGKS---SLVIMTLS--DFIGNDFTN--VEQVIIYNLP 1163 (1858)
Q Consensus 1095 ad~L~~~L~~~g~----~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~---~ILVATDV--AARGLDIp~--V~~VINyDlP 1163 (1858)
.+.+++.+++.+. .-..+.+.. ..+..+++++|++... .||+++.- .+.|||+++ ++.||-..+|
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~----~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKD----SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCC----CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 3455666665443 122333433 3455789999987554 69988887 899999988 5788888888
Q ss_pred C
Q psy15269 1164 L 1164 (1858)
Q Consensus 1164 ~ 1164 (1858)
.
T Consensus 80 f 80 (142)
T smart00491 80 F 80 (142)
T ss_pred C
Confidence 5
No 200
>PRK14873 primosome assembly protein PriA; Provisional
Probab=67.38 E-value=15 Score=49.54 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=72.6
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhh-CC-CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe
Q psy15269 1069 KSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQD-SN-MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM 1141 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~-~g-~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA 1141 (1858)
-..|-+.+++++. +.++||-+.....+..+.+.|++ .| -.+..+|++++ ..+|.+.+.+.++|+.+|+|-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~---~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLG---PADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCC---HHHHHHHHHHHhCCCCcEEEE
Confidence 3467666666553 37899999999999999999986 34 67999999999 999999999999999999999
Q ss_pred ccccccCCCCCCcceEEEcC
Q psy15269 1142 TLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1142 TDVAARGLDIp~V~~VINyD 1161 (1858)
|-.|.. .=+++..+||=-|
T Consensus 247 tRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cceeEE-eccCCCCEEEEEc
Confidence 987754 3567777777444
No 201
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=67.12 E-value=13 Score=48.71 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=49.9
Q ss_pred EEEEecChHHHHHHHHHHhh----C-CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccccC-CCCCC
Q psy15269 1085 SLIFVKTYRDASRIISAVQD----S-NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFIG-NDFTN 1153 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~----~-g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAARG-LDIp~ 1153 (1858)
+||+++||+-|..+++.++. . ++.+..+.|+++ ...+... ++.| .+|+|||+ ...|+ +|...
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~---~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~ 174 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVS---IRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSG 174 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCC---HHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhh
Confidence 89999999999999988875 3 577899999998 5555544 4556 99999997 33343 55555
Q ss_pred cceEE
Q psy15269 1154 VEQVI 1158 (1858)
Q Consensus 1154 V~~VI 1158 (1858)
|.++|
T Consensus 175 v~~lV 179 (513)
T COG0513 175 VETLV 179 (513)
T ss_pred cCEEE
Confidence 55544
No 202
>PRK14701 reverse gyrase; Provisional
Probab=66.57 E-value=17 Score=53.60 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=53.8
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh------CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD------SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~------~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV 1144 (1858)
++.+++|.++|+.-+..+.+.|+. .++.+..+||+++ ..++.++++++++|+..|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s---~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLR---KKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCC---HHHHHHHHHHHhcCCCCEEEECCc
Confidence 446899999999999999888886 3567889999999 899999999999999999999973
No 203
>KOG0291|consensus
Probab=65.00 E-value=5.1e+02 Score=35.48 Aligned_cols=158 Identities=14% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCC
Q psy15269 321 GKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSG 400 (1858)
Q Consensus 321 ~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N 400 (1858)
+...++++.-.+..+..+-||+|-+|--..|-. ......|.++. ..+++++..|+ +.+-|.-
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fRTft~P~p~Q------------fscvavD~sGe-lV~AG~~ 455 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FRTFTSPEPIQ------------FSCVAVDPSGE-LVCAGAQ 455 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccce-----eeeecCCCcee------------eeEEEEcCCCC-EEEeecc
Confidence 345667777777777888899999997655421 22233344332 12355566664 4444432
Q ss_pred CCCCCCCCCCCceeccEEeeeccc--ccEEEEEecC--ceEEEEecCCcEEEEe-CCCCCCCccccccEEecCCCCCCEE
Q psy15269 401 NLGKLGHEDTGKVTTPKVIEALRK--FRVRKVCAGT--SFSVALTWDGLVFWWG-LGLRSSSISFHTPVLVTGLSSHQIV 475 (1858)
Q Consensus 401 ~~GQLG~g~~~~~~~P~~V~~l~~--~~Iv~IaaG~--~hSlALT~dG~Vy~WG-LG~gss~~~~~~P~~V~~l~~~~Iv 475 (1858)
+.-.+-. -...+-+.+..+.+ ..|..++... ++-+-..-|.+|-.|- ++.... ..|..+ .+.+.
T Consensus 456 d~F~Ifv---WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~----vEtl~i----~sdvl 524 (893)
T KOG0291|consen 456 DSFEIFV---WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT----VETLEI----RSDVL 524 (893)
T ss_pred ceEEEEE---EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce----eeeEee----cccee
Confidence 2100000 00000111111111 1122222111 1222223355555665 222111 122222 23466
Q ss_pred EEEEc--CceEEEEEeCCeEEEEeCCCCCCCCCC
Q psy15269 476 DVSIG--DSHVLALSQYNEVYAWGSNTMGQCGQD 507 (1858)
Q Consensus 476 ~Ia~G--~~HtlALt~dG~VYaWG~N~~GQLG~G 507 (1858)
.++.- +.-.++.|-||++--|-.++.+|.|.=
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 66665 666777788999999999999999653
No 204
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=61.40 E-value=27 Score=46.58 Aligned_cols=62 Identities=6% Similarity=0.076 Sum_probs=56.0
Q ss_pred hhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1079 FLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1079 lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
++..+.+||.++++.-++.-.+.|+..|+.+..+||+++ ..++..+++....|..+|++.|.
T Consensus 50 l~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~---~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 50 LLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLS---AKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHHhCCCCCEEEECh
Confidence 345578999999999999888999999999999999999 99999999999999999999885
No 205
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.53 E-value=27 Score=45.23 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=56.3
Q ss_pred hcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc
Q psy15269 1080 LEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1080 L~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV 1144 (1858)
.....+||.++|+.-+....+.|+..|+++..++|+.+ ..++..++.+.+.++.+|+++|.-
T Consensus 49 ~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~---~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 49 CSDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQS---KEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred HcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHHhcCCCCEEEECHH
Confidence 34578999999999999999999999999999999998 899999999999999999999974
No 206
>smart00589 PRY associated with SPRY domains.
Probab=60.04 E-value=9.4 Score=33.67 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.2
Q ss_pred eeEecCCCceE-EEEecCCeEEEecC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGP 1435 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~ 1435 (1858)
.|++||++++. +.+++|+.+++...
T Consensus 3 ~vtld~~tA~~~l~lS~d~~~v~~~~ 28 (52)
T smart00589 3 DVTLDPDTAHPYLLLSEDRRSVRYGD 28 (52)
T ss_pred CCEECcccCCCCeEECCCCCEEEECC
Confidence 37999999999 88898898887654
No 207
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=59.05 E-value=15 Score=49.94 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=73.7
Q ss_pred ECChhhHHHHHHHhhcC-----CcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1066 RTPKSQKIVNLLSFLEG-----KRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1066 ~v~~~~Kl~~Ll~lL~~-----~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
-+.-+.|.+.+++++.. .++||-++-......+...|+. .|.++..+|++++ ..+|.....+.++|+++|.
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls---~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLS---PGERYRVWRRARRGEARVV 300 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCC---hHHHHHHHHHHhcCCceEE
Confidence 34566777777776642 6899999998888888888875 5899999999999 9999999999999999999
Q ss_pred EeccccccCCCCCCcceEEE
Q psy15269 1140 IMTLSDFIGNDFTNVEQVII 1159 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VIN 1159 (1858)
|-|-.|-. .=+++..+||=
T Consensus 301 IGtRSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 301 IGTRSALF-LPFKNLGLIIV 319 (730)
T ss_pred EEechhhc-CchhhccEEEE
Confidence 99987733 45677777773
No 208
>KOG1274|consensus
Probab=58.92 E-value=6.9e+02 Score=34.97 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=43.2
Q ss_pred ecCcEEEEEeeCCc-EEEEeCCCCCCcCCC-CCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeE--EEEecCC
Q psy15269 276 CSEAHVLTVTSEGE-VYSWGVGEHGKLGHG-NTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLL--YTWGEGD 350 (1858)
Q Consensus 276 ~G~~HtlaLT~dG~-VysWG~N~~GQLG~g-~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~V--YtWG~N~ 350 (1858)
.++...++++.+|+ ++++|.|.. .-.- .......|..|. ..++.|..|+|-.+|.+.-++++.| |.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~--ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGD--IRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCc--eEEeecCCcccCCchhh--ccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 34455566677765 455554422 1111 112225677665 2677899999999999888888864 6665543
No 209
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=58.41 E-value=26 Score=47.17 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=50.6
Q ss_pred CcEEEEecChHHHHHHHHHHhh-----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccccC-CCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD-----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFIG-NDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~-----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAARG-LDI 1151 (1858)
.++||.|+|+.-|..+++.++. .++.+..+||+.+ ...+...+ + ....|+|+|. ...|+ +++
T Consensus 75 ~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~---~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l 147 (629)
T PRK11634 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQR---YDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDL 147 (629)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcC---HHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcch
Confidence 5799999999999988887764 3789999999987 55544443 3 3578999994 44444 566
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++.+||
T Consensus 148 ~~l~~lV 154 (629)
T PRK11634 148 SKLSGLV 154 (629)
T ss_pred hhceEEE
Confidence 6666655
No 210
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=58.12 E-value=19 Score=46.47 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=51.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-CCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-GNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-GLDI 1151 (1858)
.+++|.++|+.-+..+++.++.. ++.+..++|+.+ ...+.+.+ + ....|+|+|. ...| .+++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~---~~~~~~~l---~-~~~~IvV~Tp~rl~~~l~~~~~~l 145 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVP---MGPQIDSL---E-HGAHIIVGTPGRILDHLRKGTLDL 145 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCC---hHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCccH
Confidence 36999999999999988887752 688999999998 65554433 3 5689999993 4443 4677
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 146 ~~l~~lV 152 (460)
T PRK11776 146 DALNTLV 152 (460)
T ss_pred HHCCEEE
Confidence 7777776
No 211
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.39 E-value=31 Score=40.39 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=44.6
Q ss_pred ccEEEEEecCceEEEEecCCcEEEEeCCCCCCCcc--ccccEEec-----CCCCCCEEEEEEcCceE-EEEEeCCeEEEE
Q psy15269 425 FRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSIS--FHTPVLVT-----GLSSHQIVDVSIGDSHV-LALSQYNEVYAW 496 (1858)
Q Consensus 425 ~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~--~~~P~~V~-----~l~~~~Iv~Ia~G~~Ht-lALt~dG~VYaW 496 (1858)
.+++.+.|-+.+-+++|.+|.+|+|-+........ ...|..-. ......|+.+....... ++..++|+.|+|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y 92 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSY 92 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEe
Confidence 45788999999999999999999999432221100 01111100 02334677666664443 444467888888
Q ss_pred eC
Q psy15269 497 GS 498 (1858)
Q Consensus 497 G~ 498 (1858)
=.
T Consensus 93 ~~ 94 (219)
T PF07569_consen 93 SP 94 (219)
T ss_pred cc
Confidence 64
No 212
>KOG0347|consensus
Probab=56.94 E-value=19 Score=46.60 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=46.6
Q ss_pred EEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1085 SLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
++||++||+-|..+...|.. -+|.+..|-|+|+ +..+.++|++ .-.|.|||.
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLa---vqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLA---VQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhH---HHHHHHHHhc----CCCEEEecc
Confidence 99999999999999999875 4899999999999 8888888876 678999997
No 213
>KOG0646|consensus
Probab=56.93 E-value=3.7e+02 Score=34.78 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=64.6
Q ss_pred EEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCc--eEEEEEeCCeEEEEecCCCCCCCCC
Q psy15269 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHS--HSAAVTEDGLLYTWGEGDHGRLGHG 357 (1858)
Q Consensus 280 HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~--HS~aLT~dG~VYtWG~N~~GQLG~G 357 (1858)
+.++=+..|++|.|-.+..--|-.-.... ..|+.+....+ |.+-=.+||.|++|=--.--
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHY-------------Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv----- 156 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHY-------------QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV----- 156 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhc-------------cceeEEEEeCCCcEEEecCCCccEEEEEEEeec-----
Confidence 44444589999999765432221111111 12444444433 44444578999999642110
Q ss_pred CCCccccccccccCCC----ceEEeecCc--eEEEEE--cCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEE
Q psy15269 358 DLKSRHTPTLVTELSD----VGAVSCGES--HTLVLS--QDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRK 429 (1858)
Q Consensus 358 ~~~~~~~P~~V~~l~~----I~~IAcG~~--HTlaLt--~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~ 429 (1858)
+..+...|..+..+.+ |+++.+|.. .+.++| .|. ++-+|--.. |.| -.....|. ..+-+.
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~-g~L----Llti~fp~------si~av~ 224 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR-TIKLWDLSL-GVL----LLTITFPS------SIKAVA 224 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc-eEEEEEecc-cee----eEEEecCC------cceeEE
Confidence 0011113333333332 666555543 222222 233 455553211 100 01112222 223444
Q ss_pred EEecCceEEEEecCCcEEEEe
Q psy15269 430 VCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 430 IaaG~~hSlALT~dG~Vy~WG 450 (1858)
+.-+..+.++=+++|.+|..-
T Consensus 225 lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EcccccEEEecCCcceEEeee
Confidence 555666777778888888765
No 214
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=56.51 E-value=39 Score=47.51 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=66.5
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----------------------------CCe-------------EEEEecCCCCccH
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----------------------------NMM-------------TIPMSNNGTSWSH 1121 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----------------------------g~~-------------~~~LHG~ms~~~Q 1121 (1858)
..+|+|+=+++.|+..+..+... +++ ...-|++|- +
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlL---P 456 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLL---P 456 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccc---h
Confidence 46999999999999988877621 221 234588887 8
Q ss_pred HHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----EcC----CCCChhhhhhhc
Q psy15269 1122 VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----IYN----LPLSINHYVFQI 1173 (1858)
Q Consensus 1122 ~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----NyD----lP~~~e~YIHRI 1173 (1858)
..|..+=.-|..|.++|++||...|-||+.|.=+.|+ .+| -+-++..|++-.
T Consensus 457 ~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~Qms 516 (1041)
T COG4581 457 AIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMS 516 (1041)
T ss_pred HHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhh
Confidence 9999999999999999999999999999998766665 222 223456666644
No 215
>KOG0293|consensus
Probab=54.89 E-value=1.7e+02 Score=37.17 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEe--cCCcEEEEeCCCCCCCcc
Q psy15269 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALT--WDGLVFWWGLGLRSSSIS 459 (1858)
Q Consensus 382 ~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT--~dG~Vy~WGLG~gss~~~ 459 (1858)
-|-+++|.||++|+.-+....-.+-.-. ....-..+. ....|.+++-..+.-++|. .+.++..|-+-
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e--~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~------- 425 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNRE--ARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLE------- 425 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechh--hhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecc-------
Confidence 3567888899878777632211110000 000000111 2234555554444334443 46778888632
Q ss_pred ccccEEecCCCC----C-CEEEEEEcCceEEEEE--eCCeEEEEeCCC
Q psy15269 460 FHTPVLVTGLSS----H-QIVDVSIGDSHVLALS--QYNEVYAWGSNT 500 (1858)
Q Consensus 460 ~~~P~~V~~l~~----~-~Iv~Ia~G~~HtlALt--~dG~VYaWG~N~ 500 (1858)
.++.+....| . -|.+-..|.+-.++.. +|++||.|-.-.
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 2222222111 1 2333344444455544 689999998743
No 216
>KOG1240|consensus
Probab=54.35 E-value=2.3e+02 Score=40.46 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=80.1
Q ss_pred CeEEEEEcCCE-EEEEe--cCCcEEEEccc-ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEE-eeCCcEEEEe
Q psy15269 220 NIRHIEAGQFC-TFLLD--STGGLLVYGKG-WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTV-TSEGEVYSWG 294 (1858)
Q Consensus 220 ~IkqVA~G~~h-TlaLt--~dG~VyawG~N-qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaL-T~dG~VysWG 294 (1858)
.|.+++....| ++|++ +||.|-.|-.- -.|.+ ......-+-..-...+..+. .|++.+.+|+ ++||.|-..+
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt--~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVT--MCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEE--eccCCCeEEEEcCCCeEEEEE
Confidence 46688888888 78876 78999999653 22221 11111111111223344555 3666666665 6789988887
Q ss_pred CCCCCCcCCCCCcccccceee--ecCCCCCcEEEEEecC----c-eEEEEEeCCeEEEEecCCCCCCCCCCCCccccccc
Q psy15269 295 VGEHGKLGHGNTLSQRRPKLI--MGGLYGKRVTQVSAGH----S-HSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTL 367 (1858)
Q Consensus 295 ~N~~GQLG~g~~~~~~~P~~V--~~~l~~~~IvqVa~G~----~-HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~ 367 (1858)
.+.+.+ ....+..+ ...-....+++..+-. + -.++.|..+.+..|+-...-.+ ..
T Consensus 1127 id~~~~-------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-----------w~ 1188 (1431)
T KOG1240|consen 1127 IDHYNV-------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-----------WR 1188 (1431)
T ss_pred cccccc-------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----------Hh
Confidence 665411 11111111 1111112244443321 2 2456788888989975321100 00
Q ss_pred cccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCC
Q psy15269 368 VTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL 405 (1858)
Q Consensus 368 V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQL 405 (1858)
++ -+..+|.-.++++++.+. .++-|.+. |++
T Consensus 1189 lk-----~~~~hG~vTSi~idp~~~-WlviGts~-G~l 1219 (1431)
T KOG1240|consen 1189 LK-----NQLRHGLVTSIVIDPWCN-WLVIGTSR-GQL 1219 (1431)
T ss_pred hh-----cCccccceeEEEecCCce-EEEEecCC-ceE
Confidence 11 134566666777777774 55556433 444
No 217
>PHA03098 kelch-like protein; Provisional
Probab=54.35 E-value=3.7e+02 Score=35.34 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=11.7
Q ss_pred ceEEEEEeCCeEEEEecC
Q psy15269 332 SHSAAVTEDGLLYTWGEG 349 (1858)
Q Consensus 332 ~HS~aLT~dG~VYtWG~N 349 (1858)
.|+++. -+|++|++|-.
T Consensus 335 ~~~~~~-~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTV-FNNRIYVIGGI 351 (534)
T ss_pred cceEEE-ECCEEEEEeCC
Confidence 455444 47899999953
No 218
>PHA03098 kelch-like protein; Provisional
Probab=53.89 E-value=54 Score=43.06 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=11.5
Q ss_pred cceeeCCeEEEEcCC
Q psy15269 182 DISVAHSKVYTWGCN 196 (1858)
Q Consensus 182 ~~a~s~g~Vy~WGsN 196 (1858)
.++..++.+|+.|..
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 456678999999943
No 219
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=53.78 E-value=38 Score=32.65 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=39.5
Q ss_pred EecCC-CceEEEEecCCeEEE-ecCCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeec
Q psy15269 1413 SFDKE-KCVCCTVECGGQSLI-HGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWP 1476 (1858)
Q Consensus 1413 ~~D~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~ 1476 (1858)
.|-+. ++..+.+++|++++. ..++.++++.-+.++..| -.++++|++.+..-.| ..|||...+
T Consensus 3 ~FH~~~~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~-E~~~v~I~~~~~~wsG~L~~GvT~~~ 68 (69)
T PF07177_consen 3 RFHPNVHGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIG-EKFEVRIDEVEPSWSGSLRIGVTSCD 68 (69)
T ss_dssp -EEC-EE-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT--EEEEEEEEE-SSSSS--EEEEESS-
T ss_pred cccCcccCCCEEEcCCCeEEEecccCCceEEEecCCccCC-CEEEEEEEecCCCceeEEEEeeEccC
Confidence 35453 333399999998777 778999999999999999 5678888888766555 789987654
No 220
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=53.24 E-value=38 Score=38.15 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=49.4
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccccC-CCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFIG-NDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAARG-LDIp 1152 (1858)
.++||.++|+.-+....+.+++ .++.+..++|+.+ ..++...+ . +...|+|+|. ...++ .++.
T Consensus 70 ~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~ 142 (203)
T cd00268 70 PQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTS---IDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLS 142 (203)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCC---HHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChh
Confidence 4799999999999888777664 3788999999987 55554333 2 5778999994 22233 4566
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
+++++|
T Consensus 143 ~l~~lI 148 (203)
T cd00268 143 KVKYLV 148 (203)
T ss_pred hCCEEE
Confidence 677666
No 221
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=52.77 E-value=5.2e+02 Score=31.66 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=12.5
Q ss_pred cceeeCCeEEEEcCCCC
Q psy15269 182 DISVAHSKVYTWGCNLH 198 (1858)
Q Consensus 182 ~~a~s~g~Vy~WGsN~~ 198 (1858)
.+++.++.+|+.|-...
T Consensus 8 ~~~~~~~~l~v~GG~~~ 24 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNF 24 (323)
T ss_pred eeeEECCEEEEeeccCC
Confidence 35667889999996544
No 222
>PLN02153 epithiospecifier protein
Probab=52.41 E-value=5.4e+02 Score=31.79 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=12.7
Q ss_pred CceEEEEEeCCeEEEEecC
Q psy15269 331 HSHSAAVTEDGLLYTWGEG 349 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N 349 (1858)
..|++++ .++++|++|--
T Consensus 129 ~~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeeEEEE-ECCEEEEECCc
Confidence 3566665 46799999853
No 223
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=52.28 E-value=23 Score=48.34 Aligned_cols=82 Identities=9% Similarity=0.052 Sum_probs=64.0
Q ss_pred CChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe
Q psy15269 1067 TPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM 1141 (1858)
Q Consensus 1067 v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA 1141 (1858)
-...+|+.+.+..++ +.++||-+.+....+.+++.|++.|++...|...- .+|+.-+-.+.-..-.|=||
T Consensus 409 ~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~-----h~~EA~Iia~AG~~gaVTiA 483 (822)
T COG0653 409 KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN-----HAREAEIIAQAGQPGAVTIA 483 (822)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc-----HHHHHHHHhhcCCCCccccc
Confidence 356778888887765 37899999999999999999999999988887764 34555554544334457899
Q ss_pred ccccccCCCCCC
Q psy15269 1142 TLSDFIGNDFTN 1153 (1858)
Q Consensus 1142 TDVAARGLDIp~ 1153 (1858)
|+.|+||-||.-
T Consensus 484 TNMAGRGTDIkL 495 (822)
T COG0653 484 TNMAGRGTDIKL 495 (822)
T ss_pred cccccCCccccc
Confidence 999999999853
No 224
>KOG4693|consensus
Probab=51.96 E-value=2.6e+02 Score=33.72 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=33.1
Q ss_pred CcEEEEEeeCCcEEEEeC-CC-CCCcCCCCCcccccceeeecCCCCCcEEEEE--ecCceEEEEEeCCeEEEEec
Q psy15269 278 EAHVLTVTSEGEVYSWGV-GE-HGKLGHGNTLSQRRPKLIMGGLYGKRVTQVS--AGHSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~-N~-~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa--~G~~HS~aLT~dG~VYtWG~ 348 (1858)
..|+++. -++++|.||- |+ .|.+..-.. .-|..-. ....+|.... +-+.|++++-. +..|.+|-
T Consensus 80 YGHtvV~-y~d~~yvWGGRND~egaCN~Ly~---fDp~t~~--W~~p~v~G~vPgaRDGHsAcV~g-n~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVE-YQDKAYVWGGRNDDEGACNLLYE---FDPETNV--WKKPEVEGFVPGARDGHSACVWG-NQMYIFGG 147 (392)
T ss_pred cCceEEE-EcceEEEEcCccCcccccceeee---ecccccc--ccccceeeecCCccCCceeeEEC-cEEEEecC
Confidence 4577555 4679999985 44 444432111 1111110 1112233333 33678888874 48999984
No 225
>KOG0925|consensus
Probab=50.68 E-value=62 Score=41.61 Aligned_cols=117 Identities=11% Similarity=0.097 Sum_probs=77.2
Q ss_pred HHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhh----c---CCcEEEEecChHHHHHHHHHHhhC--------
Q psy15269 1041 NIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFL----E---GKRSLIFVKTYRDASRIISAVQDS-------- 1105 (1858)
Q Consensus 1041 ~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL----~---~~k~IIFvnTk~~ad~L~~~L~~~-------- 1105 (1858)
+.|..|+-.+.|.. ...++-+|..-++++.++..++.+ . .+-++||....+..+...+.+.+.
T Consensus 207 q~yf~n~Pll~vpg--~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~ 284 (699)
T KOG0925|consen 207 QRYFGNAPLLAVPG--THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQV 284 (699)
T ss_pred HHHhCCCCeeecCC--CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhcccc
Confidence 45666766677754 334555666667777777665533 1 267999999999888888877632
Q ss_pred -CCeEEEEecCCCCccHHHHH-HHHHHHhcC--CCcEEEeccccccCCCCCCcceEEEcCCCC
Q psy15269 1106 -NMMTIPMSNNGTSWSHVECL-ELLNLFNTG--KSSLVIMTLSDFIGNDFTNVEQVIIYNLPL 1164 (1858)
Q Consensus 1106 -g~~~~~LHG~ms~~~Q~eR~-~~L~~Fr~G--~~~ILVATDVAARGLDIp~V~~VINyDlP~ 1164 (1858)
-+.+..+|-. |++|. +....=++| .-+|.|+|.+|.--+-|++|.+||.-.+-.
T Consensus 285 g~l~v~PLyP~-----~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~k 342 (699)
T KOG0925|consen 285 GPLKVVPLYPA-----QQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSK 342 (699)
T ss_pred CCceEEecCch-----hhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhh
Confidence 3568888833 33331 011100122 235999999999999999999999766643
No 226
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=50.33 E-value=32 Score=49.51 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=50.9
Q ss_pred CCcEEEEecChHHHHHHHHHHhh----CCCeE---EEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD----SNMMT---IPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~----~g~~~---~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV 1144 (1858)
+.+++|.++|+.-|..+++.+++ .|+.+ ..+||+++ ..+|...++++++|..+|+|+|.-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~---~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLP---TKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCC---HHHHHHHHHHHhcCCCCEEEECHH
Confidence 47899999999999998888875 34443 35899999 899999999999999999999984
No 227
>PHA02713 hypothetical protein; Provisional
Probab=47.19 E-value=89 Score=41.66 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=13.3
Q ss_pred CcEEEEEeeCCcEEEEeCC
Q psy15269 278 EAHVLTVTSEGEVYSWGVG 296 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N 296 (1858)
..+..+..-+|++|++|..
T Consensus 342 R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhceeEEEECCEEEEECCc
Confidence 3344455668999999964
No 228
>COG4889 Predicted helicase [General function prediction only]
Probab=46.59 E-value=9.2 Score=51.37 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=63.8
Q ss_pred CcEEEEecChHHHHHHHHHHh-----------h--CCCeEEEEe--cCCCCccHHHHHHHHH---HHhcCCCcEEEeccc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQ-----------D--SNMMTIPMS--NNGTSWSHVECLELLN---LFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~-----------~--~g~~~~~LH--G~ms~~~Q~eR~~~L~---~Fr~G~~~ILVATDV 1144 (1858)
.|+|-||++.++...+++.+. + .++.++.=| |.|+ ..+|.+.+. .|...+++||=---.
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmN---al~R~~l~~l~~~~~~neckIlSNaRc 537 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMN---ALERLDLLELKNTFEPNECKILSNARC 537 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeeccccccc---HHHHHHHHhccCCCCcchheeeccchh
Confidence 467788887777666555543 2 345555544 6676 777754443 467778889888888
Q ss_pred cccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1145 DFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1145 AARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
.+.|+|+|.++-||=||.-....+-||-+
T Consensus 538 LSEGVDVPaLDsViFf~pr~smVDIVQaV 566 (1518)
T COG4889 538 LSEGVDVPALDSVIFFDPRSSMVDIVQAV 566 (1518)
T ss_pred hhcCCCccccceEEEecCchhHHHHHHHH
Confidence 89999999999999999888887777744
No 229
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.49 E-value=42 Score=44.74 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=42.6
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.++||.++|+.-+..+++.+++ .++.+..+||+.+ ...+...+ .+..+|+|+|.
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~---~~~q~~~l----~~~~dIiV~TP 142 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD---YDKQRELL----QQGVDVIIATP 142 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCC---HHHHHHHH----hCCCCEEEECH
Confidence 5799999999999888887665 4788999999987 65554444 24678999995
No 230
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=46.29 E-value=54 Score=32.27 Aligned_cols=45 Identities=7% Similarity=0.040 Sum_probs=35.4
Q ss_pred HHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1073 IVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1073 l~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
+...+..+.. .++++||++-..+...+..|++.|+.+..+.|+++
T Consensus 41 ~~~~~~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 41 LRDRLNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred HHHHHHhcCCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3333333443 78999999888899999999999999999999985
No 231
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.98 E-value=84 Score=36.84 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.1
Q ss_pred cccccCCCCCeEEEEEcCCEEEEEecCCcEEEEc
Q psy15269 211 RPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG 244 (1858)
Q Consensus 211 ~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG 244 (1858)
.|..+ ....+..+.|-+.+.+++|++|.+|+|-
T Consensus 6 ~P~i~-Lgs~~~~l~~~~~~Ll~iT~~G~l~vWn 38 (219)
T PF07569_consen 6 LPPIV-LGSPVSFLECNGSYLLAITSSGLLYVWN 38 (219)
T ss_pred cCcEe-cCCceEEEEeCCCEEEEEeCCCeEEEEE
Confidence 45443 4557888999999999999999999994
No 232
>KOG4441|consensus
Probab=44.46 E-value=1.9e+02 Score=38.85 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=86.5
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCC--CCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTT--IQP 257 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~--~~~ 257 (1858)
+...++.++.||+-|--+.|..... .-...-|.... +..+-.........-+..-+|.+|+.|- .-|..... ...
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~-~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l~g~iYavGG-~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLS-SVERYDPRTNQ-WTPVAPMNTKRSDFGVAVLDGKLYAVGG-FDGEKSLNSVECY 401 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccc-eEEEecCCCCc-eeccCCccCccccceeEEECCEEEEEec-cccccccccEEEe
Confidence 4556778899999994332211111 11122333222 2233333344444445567899999983 11211111 111
Q ss_pred CceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe---c-Cce
Q psy15269 258 LPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA---G-HSH 333 (1858)
Q Consensus 258 ~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~---G-~~H 333 (1858)
.|.. ..+..+...........+..-+|++|..|-.+...--.. +.....|. ....+.++. . ..|
T Consensus 402 Dp~~----~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~-sve~YDP~-------t~~W~~~~~M~~~R~~~ 469 (571)
T KOG4441|consen 402 DPVT----NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN-SVECYDPE-------TNTWTLIAPMNTRRSGF 469 (571)
T ss_pred cCCC----CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc-eEEEEcCC-------CCceeecCCcccccccc
Confidence 1211 122222211122233345566899999996443321000 00111111 111222221 1 122
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeC
Q psy15269 334 SAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGS 399 (1858)
Q Consensus 334 S~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~ 399 (1858)
. +.+-+|.||+.|-.+. +-.. ..-....|.. ..+.-+.....+..+.-+..-+|+ +|+-|.
T Consensus 470 g-~a~~~~~iYvvGG~~~-~~~~-~~VE~ydp~~-~~W~~v~~m~~~rs~~g~~~~~~~-ly~vGG 530 (571)
T KOG4441|consen 470 G-VAVLNGKIYVVGGFDG-TSAL-SSVERYDPET-NQWTMVAPMTSPRSAVGVVVLGGK-LYAVGG 530 (571)
T ss_pred e-EEEECCEEEEECCccC-CCcc-ceEEEEcCCC-CceeEcccCccccccccEEEECCE-EEEEec
Confidence 3 4444789999995432 1111 0101111211 001113334556666666667784 999885
No 233
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.63 E-value=77 Score=41.01 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=50.1
Q ss_pred cEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc------ccccCCCCCC
Q psy15269 1084 RSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL------SDFIGNDFTN 1153 (1858)
Q Consensus 1084 k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD------VAARGLDIp~ 1153 (1858)
++||.++|+.-|..+.+.++. .++.+..++|+.+ ...+... + .+..+|+|+|. +..+.+++.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~---~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVS---INPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQ 149 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcC---HHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCccccc
Confidence 699999999999888887765 4678889999987 5543322 2 35789999995 2344567777
Q ss_pred cceEE
Q psy15269 1154 VEQVI 1158 (1858)
Q Consensus 1154 V~~VI 1158 (1858)
+++||
T Consensus 150 v~~lV 154 (456)
T PRK10590 150 VEILV 154 (456)
T ss_pred ceEEE
Confidence 77666
No 234
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=41.62 E-value=71 Score=40.85 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=50.0
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc------ccccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL------SDFIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD------VAARGLDIp 1152 (1858)
.++||.++|+.-|..+++.++. .++.+..++|+.+ ...+...+ .+..+|+|+|. +..+.++..
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~---~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~ 146 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVA---YMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCR 146 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCC---HHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcc
Confidence 5799999999998887766553 5789999999997 55554443 24678999996 122445666
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 147 ~v~~lV 152 (434)
T PRK11192 147 AVETLI 152 (434)
T ss_pred cCCEEE
Confidence 777666
No 235
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.37 E-value=73 Score=41.39 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=43.2
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.++||.++|+.-+..+.+.++. .++.+..++|+.+ -..+ .+.++.+..+|+|+|.
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~---~~~~---~~~~~~~~~~Iiv~TP 221 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMD---FDKQ---LKQLEARFCDILVATP 221 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCC---hHHH---HHHHhCCCCCEEEECH
Confidence 4799999999999888887764 4788999999986 3332 2445667889999996
No 236
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=39.51 E-value=89 Score=42.05 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=55.6
Q ss_pred hhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1079 FLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1079 lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
++....+||.++++.-+....+.|+..|+.+..+++..+ ..++..+++..++|+.+++++|+
T Consensus 62 l~~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~---~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 62 LVLDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQT---REQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred HHcCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCC---HHHHHHHHHHHhCCCCcEEEECh
Confidence 344578999999999999999999999999999999998 88888899999999999999885
No 237
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=39.41 E-value=96 Score=44.33 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=53.6
Q ss_pred hcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhc--CCCcEEEecc
Q psy15269 1080 LEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNT--GKSSLVIMTL 1143 (1858)
Q Consensus 1080 L~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~--G~~~ILVATD 1143 (1858)
+....+||.++++.-+..-...|...|+++..+.|+++ ..++.+++++++. |+.+||++|.
T Consensus 498 ~~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s---~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 498 ICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGME---WAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred HcCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCC---HHHHHHHHHHHHhcCCCCCEEEECh
Confidence 34578999999999988777777788999999999998 8888899998877 8999999997
No 238
>KOG1900|consensus
Probab=39.10 E-value=6e+02 Score=36.95 Aligned_cols=203 Identities=14% Similarity=0.200 Sum_probs=95.6
Q ss_pred eeeCCeEEEEcCCCCCCCCcCCCCC-------cccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc----ccCCCC
Q psy15269 184 SVAHSKVYTWGCNLHHQILDEVRGK-------CSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG----WLGLAN 252 (1858)
Q Consensus 184 a~s~g~Vy~WGsN~~GQLG~g~~~~-------~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N----qLGlg~ 252 (1858)
.+.|.++|.|-.|+.+++-.-+..+ ...|+.--+-..| .|.+++..--.++..|-- ..+...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-------qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI-------QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh-------heeEEecccceEEEEEEEeccccCcccc
Confidence 4578999999999877764222111 1222222111122 477888888888877731 222211
Q ss_pred CCCCCCceeecCccCcceEEEEEecCcEEEEEe-eCCcEEEE----eCCCCCCcCC----C-CCcccccceeeecC-CCC
Q psy15269 253 TTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVT-SEGEVYSW----GVGEHGKLGH----G-NTLSQRRPKLIMGG-LYG 321 (1858)
Q Consensus 253 ~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT-~dG~VysW----G~N~~GQLG~----g-~~~~~~~P~~V~~~-l~~ 321 (1858)
..+. -.++ .....|..|.+..+--++++ .||.||-. +.+-+++-.+ + .......|....-+ ...
T Consensus 168 f~~~---~~i~--~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS---FKIS--VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc---eeee--cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 1111 11223333332222222222 34443321 2222222111 0 00112345533322 335
Q ss_pred CcEEEEEecCceE--EEEEeCCeEEEEecCCCCCCCCCCCC-----------ccccccccccCCCceEEe------ecCc
Q psy15269 322 KRVTQVSAGHSHS--AAVTEDGLLYTWGEGDHGRLGHGDLK-----------SRHTPTLVTELSDVGAVS------CGES 382 (1858)
Q Consensus 322 ~~IvqVa~G~~HS--~aLT~dG~VYtWG~N~~GQLG~G~~~-----------~~~~P~~V~~l~~I~~IA------cG~~ 382 (1858)
..|++|+-+.... ..+++.|.|-+|--...|+-+.-... ....|..=+....|++|+ .-+-
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~es~~l 322 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSASESNDL 322 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcccccce
Confidence 6899999987664 56678888877755555554432110 001121111222355553 3456
Q ss_pred eEEEEEcCCCEEEEEe
Q psy15269 383 HTLVLSQDGHTVWSMG 398 (1858)
Q Consensus 383 HTlaLt~dG~tVysWG 398 (1858)
|.+|+|..|-.+|.=|
T Consensus 323 ~LvA~ts~GvRlYfs~ 338 (1311)
T KOG1900|consen 323 HLVAITSTGVRLYFST 338 (1311)
T ss_pred eEEEEecCCeEEEEec
Confidence 9999999996455444
No 239
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=38.86 E-value=9.7e+02 Score=30.82 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=88.6
Q ss_pred cCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeec-CCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCC
Q psy15269 277 SEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMG-GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLG 355 (1858)
Q Consensus 277 G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~-~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG 355 (1858)
...+.++|.+||.++.+. -.|.. ....+..+.. ...+.+|-.+..+.+-.+++|.++++|.-=+... ..-
T Consensus 90 ~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~-~~~ 160 (410)
T PF04841_consen 90 DDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDE-PVK 160 (410)
T ss_pred CCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccc-cch
Confidence 456888999999988763 33433 1111222210 0111233344556566888999999998733221 100
Q ss_pred CCCCCccccccccc---cCCCce--EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEE
Q psy15269 356 HGDLKSRHTPTLVT---ELSDVG--AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKV 430 (1858)
Q Consensus 356 ~G~~~~~~~P~~V~---~l~~I~--~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~I 430 (1858)
... ....|.... ...... ....+.....++...|..++.--.+...+ +. ...++.+|
T Consensus 161 ~~~--~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--------------i~--~~~~i~~i 222 (410)
T PF04841_consen 161 LRR--LPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--------------ID--SDGPIIKI 222 (410)
T ss_pred hhc--cccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--------------cc--CCCCeEEE
Confidence 000 001122211 111111 22444444444444444466443332211 11 11236665
Q ss_pred Eec--CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEE-EEEcCceEEEEEeCCeEEEEeCC
Q psy15269 431 CAG--TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVD-VSIGDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 431 aaG--~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~-Ia~G~~HtlALt~dG~VYaWG~N 499 (1858)
+.. +.+.++++.+|.+|+.-..... .-.....-......+ .-||. .++++.-...|+..|.+
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~------~~~e~~~~~~~~p~~~~WCG~-dav~l~~~~~l~lvg~~ 287 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSE------KLCEFDTDSKSPPKQMAWCGN-DAVVLSWEDELLLVGPD 287 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccc------eeEEeecCcCCCCcEEEEECC-CcEEEEeCCEEEEECCC
Confidence 544 4677888999999986411110 001111001122333 35665 46666657788888843
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=38.19 E-value=4.2e+02 Score=33.52 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=40.5
Q ss_pred EEEEEecCceEEEEEeCCe-EEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCc---------eEEEEEcCCCE
Q psy15269 324 VTQVSAGHSHSAAVTEDGL-LYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGES---------HTLVLSQDGHT 393 (1858)
Q Consensus 324 IvqVa~G~~HS~aLT~dG~-VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~---------HTlaLt~dG~t 393 (1858)
+..|..|...-.+++.||+ +|+.- ..|-+...|...+...-.-...+.-+..|..|.. +.++++.||+.
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva~-~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHAS-TVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEEe-ccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCE
Confidence 4556666554445877775 66653 3333334443333222112222233555555444 48999999997
Q ss_pred EEEEeC
Q psy15269 394 VWSMGS 399 (1858)
Q Consensus 394 VysWG~ 399 (1858)
+|..-.
T Consensus 119 l~V~n~ 124 (352)
T TIGR02658 119 LLFYQF 124 (352)
T ss_pred EEEecC
Confidence 887643
No 241
>PLN02153 epithiospecifier protein
Probab=37.44 E-value=8.8e+02 Score=29.94 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=12.3
Q ss_pred ceEEEEEeCCeEEEEeCCC
Q psy15269 482 SHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 482 ~HtlALt~dG~VYaWG~N~ 500 (1858)
.|++++ -++++|.+|-..
T Consensus 244 ~~~~~~-~~~~iyv~GG~~ 261 (341)
T PLN02153 244 VFAHAV-VGKYIIIFGGEV 261 (341)
T ss_pred eeeeEE-ECCEEEEECccc
Confidence 355444 478999999753
No 242
>PHA02790 Kelch-like protein; Provisional
Probab=36.38 E-value=1.3e+02 Score=39.20 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=11.4
Q ss_pred EEEeeCCcEEEEeCC
Q psy15269 282 LTVTSEGEVYSWGVG 296 (1858)
Q Consensus 282 laLT~dG~VysWG~N 296 (1858)
.+..-+|++|..|..
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 445668999999864
No 243
>PHA02790 Kelch-like protein; Provisional
Probab=36.35 E-value=1.8e+02 Score=38.06 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=10.6
Q ss_pred EEeeCCcEEEEeCC
Q psy15269 283 TVTSEGEVYSWGVG 296 (1858)
Q Consensus 283 aLT~dG~VysWG~N 296 (1858)
+..-+|++|..|..
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999863
No 244
>KOG0330|consensus
Probab=36.33 E-value=1.1e+02 Score=38.51 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=53.7
Q ss_pred HHHHhhcC---CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc--
Q psy15269 1075 NLLSFLEG---KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD-- 1145 (1858)
Q Consensus 1075 ~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA-- 1145 (1858)
.|-+++.. ..++|.++||+-|..+++.++. .|+.+..|-|+++ .+..++..|| +..|||||.=+
T Consensus 119 Il~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~-----m~~q~~~L~k--kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 119 ILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMD-----MMLQANQLSK--KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCch-----HHHHHHHhhc--CCCEEEeCcHHHH
Confidence 34444443 6799999999999999988876 4789999999997 2333444455 56789999833
Q ss_pred -----ccCCCCCCcceEE
Q psy15269 1146 -----FIGNDFTNVEQVI 1158 (1858)
Q Consensus 1146 -----ARGLDIp~V~~VI 1158 (1858)
.+|.....+.+.|
T Consensus 192 dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHHhccCccHHHhHHHh
Confidence 4555554444433
No 245
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.24 E-value=1.1e+03 Score=30.49 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCeEEEEEcC-CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCc--ceEEEEEecCcEEEEEeeCCcEEEEe
Q psy15269 219 SNIRHIEAGQ-FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAI--VSLSVSKCSEAHVLTVTSEGEVYSWG 294 (1858)
Q Consensus 219 ~~IkqVA~G~-~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i--~~Is~Ia~G~~HtlaLT~dG~VysWG 294 (1858)
.+|+.+.-.. .+.+++.+||.++... ..|.- ....+..+... ++ .++..+..+..-.++||.++++|.--
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~---~fsl~~~i~~~-~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF---QFSLGEEIEEE-KVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce---eechhhhcccc-CcccccccccccCCCCEEEECCCCeEEEEe
Confidence 4677666544 5677889999988763 22322 11112112111 11 11222233444578899999999873
No 246
>KOG4441|consensus
Probab=36.14 E-value=1.6e+02 Score=39.53 Aligned_cols=154 Identities=15% Similarity=0.113 Sum_probs=71.5
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCc
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLP 259 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P 259 (1858)
....+..+|.+|+-|--. |+-...+.+ ...|.... +.-+-..........+..-+|++|+.|-...... ....-
T Consensus 373 ~~~v~~l~g~iYavGG~d-g~~~l~svE-~YDp~~~~-W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~---~l~sv 446 (571)
T KOG4441|consen 373 DFGVAVLDGKLYAVGGFD-GEKSLNSVE-CYDPVTNK-WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN---CLNSV 446 (571)
T ss_pred cceeEEECCEEEEEeccc-cccccccEE-EecCCCCc-ccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc---ccceE
Confidence 344566889999998432 332222111 22232221 1112222233344445567899999983211110 00000
Q ss_pred eee-cCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEE---EEecCceEE
Q psy15269 260 KRV-PLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQ---VSAGHSHSA 335 (1858)
Q Consensus 260 ~~V-~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~Ivq---Va~G~~HS~ 335 (1858)
... +....+..+........+.-+..-+|.+|+.|..+. +-... ......|. ....+. ...+..+.-
T Consensus 447 e~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~-~VE~ydp~-------~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALS-SVERYDPE-------TNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred EEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccc-eEEEEcCC-------CCceeEcccCcccccccc
Confidence 000 111223333222223333346667899999996443 11111 11111221 122333 345667777
Q ss_pred EEEeCCeEEEEec
Q psy15269 336 AVTEDGLLYTWGE 348 (1858)
Q Consensus 336 aLT~dG~VYtWG~ 348 (1858)
+..-+|++|+-|-
T Consensus 518 ~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 518 VVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEEec
Confidence 7778999999985
No 247
>KOG0291|consensus
Probab=32.54 E-value=1.5e+03 Score=31.30 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=61.2
Q ss_pred ceEEeecC--ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceec-cEEeeecccccEEEEEecCceEEEE--ecCCcEEE
Q psy15269 374 VGAVSCGE--SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTT-PKVIEALRKFRVRKVCAGTSFSVAL--TWDGLVFW 448 (1858)
Q Consensus 374 I~~IAcG~--~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~-P~~V~~l~~~~Iv~IaaG~~hSlAL--T~dG~Vy~ 448 (1858)
|-+++.|. -.++++...|+ -.++|...-|||+.=+.+.... .++-... ..+..++-...-.++. .+||+|-+
T Consensus 300 ih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEE
Confidence 44445553 34566777786 7788888888887543332111 1110001 1244443333322222 35777777
Q ss_pred EeCCCCCCCccccccEEec---CCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCC
Q psy15269 449 WGLGLRSSSISFHTPVLVT---GLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQC 504 (1858)
Q Consensus 449 WGLG~gss~~~~~~P~~V~---~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQL 504 (1858)
|-.- .....+. ...+...++++.-++..+-..-||.|-+|-.+.|-..
T Consensus 377 Wn~~--------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 377 WNTQ--------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred Eecc--------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 7610 0011111 1122344555555555555556999999998776543
No 248
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.18 E-value=1.3e+02 Score=38.32 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=47.1
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc-----c-ccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS-----D-FIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV-----A-ARGLDIp 1152 (1858)
.++||.++|+.-|..+.+.++. .++.+..++|+.+ ...+... ++ ...+|+|+|.- . ...+++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~---~~~~~~~---l~-~~~~IlV~TP~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDG---YDKQLKV---LE-SGVDILIGTTGRLIDYAKQNHINLG 156 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCC---HHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcccc
Confidence 4799999999999888766543 5889999999886 4443333 23 35789999962 1 1234555
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++.+||
T Consensus 157 ~v~~lV 162 (423)
T PRK04837 157 AIQVVV 162 (423)
T ss_pred cccEEE
Confidence 555555
No 249
>PRK05560 DNA gyrase subunit A; Validated
Probab=30.80 E-value=1.7e+03 Score=31.36 Aligned_cols=210 Identities=14% Similarity=0.129 Sum_probs=93.0
Q ss_pred cCCEEEEEecCCcEEEEcccccCCCCCCCCCCce--eecCc--cCcceEEEEEe--cCcEEEEEeeCCcEEEEeCCCCCC
Q psy15269 227 GQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPK--RVPLE--AAIVSLSVSKC--SEAHVLTVTSEGEVYSWGVGEHGK 300 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~--~V~~~--~~i~~Is~Ia~--G~~HtlaLT~dG~VysWG~N~~GQ 300 (1858)
...+.+++|+.|++|..-...+-.......-.|. .+.+. +.+..+..+.- -....+++|.+|.+.---.+++-.
T Consensus 547 t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 547 THDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 4455788899999998854433222111111111 12222 23322222110 234578889999876554333211
Q ss_pred cCCCCCcccccceeeecCCCCCcEEEEEe--cCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEe
Q psy15269 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVS 378 (1858)
Q Consensus 301 LG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IA 378 (1858)
...+ .......-.+..++.+.. ...+.+++|++|++|.+-...--..|........ ..+..-..|+.+.
T Consensus 627 ~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~--i~L~~~E~Vv~~~ 697 (805)
T PRK05560 627 IRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRG--IKLREGDEVVSMD 697 (805)
T ss_pred cccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCccc--ccCCCCCEEEEEE
Confidence 1101 000100012334444433 3456899999999998865433222222111000 1112222354444
Q ss_pred ecC---ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecc-cccEEEE--EecCceEEEEecCCcEEEEe
Q psy15269 379 CGE---SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALR-KFRVRKV--CAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 379 cG~---~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~-~~~Iv~I--aaG~~hSlALT~dG~Vy~WG 450 (1858)
+.. .+.+++|+.|. +.-.-.+++-.-..+..... .+.... +..++.+ ..+....+++|++|.+..+-
T Consensus 698 ~v~~~~~~il~vTk~G~-iKr~~l~e~~~~~R~~kG~~----~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~ 770 (805)
T PRK05560 698 VVREDSQEILTVTENGY-GKRTPVSEYRLQGRGGKGVI----TIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTR 770 (805)
T ss_pred EEcCCCcEEEEEEeCCe-EEEEEHHHhhccCCCCCcEE----eeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEE
Confidence 332 25777888883 55443222211111111000 011001 1123322 23445577888888877765
No 250
>KOG1274|consensus
Probab=30.68 E-value=6.4e+02 Score=35.23 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=46.5
Q ss_pred eecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe
Q psy15269 378 SCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 378 AcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG 450 (1858)
..++...++++.+|+.++++|.+..=.. .........|..+.. .+..|..|++-.++.+.-++++.|-..-
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~-~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRK-WKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEE-eecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEee
Confidence 3455677889999998999987642111 011111244555543 4567889999999999889998865554
No 251
>smart00588 NEUZ domain in neuralized proteins.
Probab=30.32 E-value=4.9e+02 Score=27.94 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=50.2
Q ss_pred EecCCCceEEEEecCCeEEEe-cC-CCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc
Q psy15269 1413 SFDKEKCVCCTVECGGQSLIH-GP-GTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR 1478 (1858)
Q Consensus 1413 ~~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~ 1478 (1858)
.|=+.++..+.+++++.++.- .+ +.+++++-+.++..|- .++++|++...+-.| ..||+...+-.
T Consensus 4 ~FH~~~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E-~~~v~i~~~~~~w~G~l~~G~Ts~dP~ 71 (123)
T smart00588 4 RFHHRHGSNIRLSDSGRVARRSASDFCNALVFSARPLRINE-LFEVKIEKVVRKWSGALRFGVTTCDPA 71 (123)
T ss_pred ccccccCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCC-EEEEEEEEecCCccCceEEEEecCCcc
Confidence 444666666999998887763 33 7889999999999994 578888887766665 89999988555
No 252
>KOG0278|consensus
Probab=30.23 E-value=5e+02 Score=31.34 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=17.2
Q ss_pred cCceEEEEEeCCeEEEEeCCC
Q psy15269 480 GDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 480 G~~HtlALt~dG~VYaWG~N~ 500 (1858)
|.-|++-.+.+|++|+-|+.+
T Consensus 268 gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CceEEEEECCCCceeeccCCC
Confidence 566888888999999999754
No 253
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=30.17 E-value=2.6e+02 Score=34.09 Aligned_cols=141 Identities=23% Similarity=0.303 Sum_probs=76.4
Q ss_pred ecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec---CceEEEEEeCCeEEEEecC-CC
Q psy15269 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG---HSHSAAVTEDGLLYTWGEG-DH 351 (1858)
Q Consensus 276 ~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G---~~HS~aLT~dG~VYtWG~N-~~ 351 (1858)
.+.-|-++...||.||.-+. -.|.+|+-+... -+++.+..| .-|.+++..||..|..-.. .-
T Consensus 61 G~ap~dvapapdG~VWft~q-g~gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI 126 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQ-GTGAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAI 126 (353)
T ss_pred CCCccccccCCCCceEEecC-ccccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCccee
Confidence 45678899999999996543 345555433221 123334333 3577778888888877432 22
Q ss_pred CCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCC-CCCCCCCCCCCceeccEEeeecccccEEEE
Q psy15269 352 GRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSG-NLGKLGHEDTGKVTTPKVIEALRKFRVRKV 430 (1858)
Q Consensus 352 GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N-~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~I 430 (1858)
++++..+.....-|.. .+-+-+.-.+.+++..|+ +|.-|.+ .||.|.-....-...| ..
T Consensus 127 ~R~dpkt~evt~f~lp-------~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfp----aP-------- 186 (353)
T COG4257 127 GRLDPKTLEVTRFPLP-------LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFP----AP-------- 186 (353)
T ss_pred EEecCcccceEEeecc-------cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeec----cC--------
Confidence 3332222111111111 234455567889999997 9888853 3343322111110111 01
Q ss_pred EecCceEEEEecCCcEEEEe
Q psy15269 431 CAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 431 aaG~~hSlALT~dG~Vy~WG 450 (1858)
..+.-+.++.|-||+||.--
T Consensus 187 qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 187 QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred CCCCCcceEECCCCcEEEEe
Confidence 12445668889999999864
No 254
>PLN00181 protein SPA1-RELATED; Provisional
Probab=29.80 E-value=1.7e+03 Score=31.00 Aligned_cols=182 Identities=21% Similarity=0.203 Sum_probs=80.9
Q ss_pred EEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC---ceEEEEEeCCeEEEEecCCCCCCCC
Q psy15269 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH---SHSAAVTEDGLLYTWGEGDHGRLGH 356 (1858)
Q Consensus 280 HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~---~HS~aLT~dG~VYtWG~N~~GQLG~ 356 (1858)
..+.-..||.|..|-.... + .-..+. .....|..++... ...+.-..||.|..|-.+. ++.
T Consensus 547 ~las~~~Dg~v~lWd~~~~-~----------~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~-- 610 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARS-Q----------LVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS-- 610 (793)
T ss_pred EEEEEeCCCeEEEEECCCC-e----------EEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE--
Confidence 3344456899999954321 1 001111 1234576766542 2334445688999996542 111
Q ss_pred CCCCccccccccccCCCceEEee---cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec
Q psy15269 357 GDLKSRHTPTLVTELSDVGAVSC---GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG 433 (1858)
Q Consensus 357 G~~~~~~~P~~V~~l~~I~~IAc---G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG 433 (1858)
...+.....|..+.. ...+.+.-..+| .|+.|-...... |.....-....|..+..-
T Consensus 611 --------~~~~~~~~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~~-----------~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 611 --------IGTIKTKANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPKL-----------PLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred --------EEEEecCCCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCCc-----------cceEecCCCCCEEEEEEe
Confidence 001111122333322 223344445677 588886432110 100000011234444332
Q ss_pred -CceEEEEecCCcEEEEeCCCCCCCcccccc-EEecCCCCCCEEEE--EEcCceEEEEEeCCeEEEEeCC
Q psy15269 434 -TSFSVALTWDGLVFWWGLGLRSSSISFHTP-VLVTGLSSHQIVDV--SIGDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 434 -~~hSlALT~dG~Vy~WGLG~gss~~~~~~P-~~V~~l~~~~Iv~I--a~G~~HtlALt~dG~VYaWG~N 499 (1858)
....+.-..||.|..|-+..+..... ..| ..+.+.. ..+..+ +..+...+.-..||.|+.|-.+
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~-~~~l~~~~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGIN-ETPLHSFMGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccC-CcceEEEcCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 23344556789999998432211000 011 1122211 123333 3333444445568999999754
No 255
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=29.73 E-value=2.4e+02 Score=34.41 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=74.4
Q ss_pred cCCEEEEEecCCcEEEEcccccCCCCCCCCC-CceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCC-CCCCcCCC
Q psy15269 227 GQFCTFLLDSTGGLLVYGKGWLGLANTTIQP-LPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVG-EHGKLGHG 304 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~-~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N-~~GQLG~g 304 (1858)
+.-|-++...||.||.-+.++--.|+-...+ .-+.+++. +...-|.+++..||..|..-.. ..+.++..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg---------~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG---------SGASPHGIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecC---------CCCCCceEEECCCCCeeEecCcceeEEecCc
Confidence 3456677889999998776522222221111 11111111 1224588899999999887543 33333322
Q ss_pred CCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec-CCCCCCCCCCCCccccccccccCCCceEEeecCce
Q psy15269 305 NTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE-GDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESH 383 (1858)
Q Consensus 305 ~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~-N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~H 383 (1858)
+......|.. .+-+-++-.+.+++..|.||.-|. +.||.|--.......-|.. --+.-.
T Consensus 133 t~evt~f~lp----------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpy 192 (353)
T COG4257 133 TLEVTRFPLP----------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPY 192 (353)
T ss_pred ccceEEeecc----------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCc
Confidence 2222222211 122334556788999999999987 3455442211110001110 123456
Q ss_pred EEEEEcCCCEEEEE
Q psy15269 384 TLVLSQDGHTVWSM 397 (1858)
Q Consensus 384 TlaLt~dG~tVysW 397 (1858)
.++.|.+|. ||.-
T Consensus 193 Gi~atpdGs-vwya 205 (353)
T COG4257 193 GICATPDGS-VWYA 205 (353)
T ss_pred ceEECCCCc-EEEE
Confidence 788999996 8865
No 256
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=29.39 E-value=2e+02 Score=38.86 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCcEEEEecChHHH----HHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccc-cCCCCCCcce
Q psy15269 1082 GKRSLIFVKTYRDA----SRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDF-IGNDFTNVEQ 1156 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~a----d~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAA-RGLDIp~V~~ 1156 (1858)
+.++..-++|---| +.+.++|...|+.+.-+-|.+. -.+|.+++++-.+|+++|+|-|-..- ..+++.+.-+
T Consensus 311 G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~k---gk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 311 GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLK---GKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccc---hhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 47899999996555 4555556667999999999998 99999999999999999999998652 3445555555
Q ss_pred EE
Q psy15269 1157 VI 1158 (1858)
Q Consensus 1157 VI 1158 (1858)
||
T Consensus 388 VI 389 (677)
T COG1200 388 VI 389 (677)
T ss_pred EE
Confidence 54
No 257
>KOG0339|consensus
Probab=29.21 E-value=1.4e+02 Score=38.89 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=50.4
Q ss_pred CcEEEEecChHHHHHHHHHHh----hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc------ccccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQ----DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL------SDFIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~----~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD------VAARGLDIp 1152 (1858)
.-.+|-|+|+.-|..+...-+ ..|+.++++||+++ .-++.+.|+ -...|+|||. |--.+.|+.
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgs---k~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGS---KWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCc---HHHHHHhhh----cCCeEEEechHHHHHHHHhhcccce
Confidence 347888999998777654443 35899999999999 666655554 3578999998 334567777
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
.|++.|
T Consensus 370 rvS~LV 375 (731)
T KOG0339|consen 370 RVSYLV 375 (731)
T ss_pred eeeEEE
Confidence 777655
No 258
>KOG1001|consensus
Probab=28.47 E-value=27 Score=47.25 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=89.9
Q ss_pred hhhHHHHHHHhhcC-----C-cEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC-CCcE-EE
Q psy15269 1069 KSQKIVNLLSFLEG-----K-RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG-KSSL-VI 1140 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~~-----~-k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~I-LV 1140 (1858)
...|+..+++++.. . ++|||++=..-++-+...|...++....+-|.|+ +.+|.+++..|..+ ..++ ++
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~---~~~r~~s~~~~~~~~~~~vll~ 596 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEML---MKIRTKSFTDFPCDPLVTALLM 596 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhH---HHHHHhhhcccccCccHHHHHH
Confidence 55666666666642 3 8999999999999999999999999999999999 99999999999854 3344 57
Q ss_pred eccccccCCCCCCcceEEEcCCCCCh------hhhhhhccCcc-eEEEEe
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSI------NHYVFQIAGHK-EAIAFY 1183 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~------e~YIHRIag~~-~aitfv 1183 (1858)
+.-...=|+...-..||+-.|+=+++ .+-+||++.+. +-++.+
T Consensus 597 Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~ 646 (674)
T KOG1001|consen 597 SLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRF 646 (674)
T ss_pred HHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeee
Confidence 77788889999999999999988776 56778887666 545443
No 259
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=27.90 E-value=43 Score=34.18 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=18.1
Q ss_pred eEEEEeCCccccccccCCCCCCce
Q psy15269 1527 TLSFGKNGEEPHLAFQDLDTSAPL 1550 (1858)
Q Consensus 1527 tl~f~~ng~~~GvAF~~l~~~~~l 1550 (1858)
++.+..+|++.||.|.|+|.|+||
T Consensus 63 ~~~i~~~~~~~gIrF~GiP~GhEf 86 (94)
T cd02974 63 SFSINRPGEDTGIRFAGIPMGHEF 86 (94)
T ss_pred EEEEecCCCcccEEEEecCCchhH
Confidence 344455777889999999998764
No 260
>KOG0316|consensus
Probab=27.89 E-value=8e+02 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=26.1
Q ss_pred cccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEe
Q psy15269 309 QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG 347 (1858)
Q Consensus 309 ~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG 347 (1858)
...|.+|.. -....|..|.....-.++=+.||++-++-
T Consensus 134 s~ePiQild-ea~D~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 134 SFEPIQILD-EAKDGVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred CCCccchhh-hhcCceeEEEecccEEEeeccCCcEEEEE
Confidence 345666643 23345888888777788888899887764
No 261
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=27.70 E-value=1.2e+03 Score=29.29 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec-----CceEEEEEeCCeEEEEecCC--
Q psy15269 278 EAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG-----HSHSAAVTEDGLLYTWGEGD-- 350 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G-----~~HS~aLT~dG~VYtWG~N~-- 350 (1858)
..+..+...+|++|.+|-... +............-.-.........++.- ..|+++...+|+||++|-..
T Consensus 75 r~~~~~v~~~~~IYV~GG~~~---~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~ 151 (376)
T PRK14131 75 REQAVAAFIDGKLYVFGGIGK---TNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKN 151 (376)
T ss_pred cccceEEEECCEEEEEcCCCC---CCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHH
Q ss_pred -----------------------CCCCCCCCCCccccccccccCCC------ceEEee-cCceEEEEEcCCCEEEEEeCC
Q psy15269 351 -----------------------HGRLGHGDLKSRHTPTLVTELSD------VGAVSC-GESHTLVLSQDGHTVWSMGSG 400 (1858)
Q Consensus 351 -----------------------~GQLG~G~~~~~~~P~~V~~l~~------I~~IAc-G~~HTlaLt~dG~tVysWG~N 400 (1858)
....+...............-.. +..+-. ...+..++..+++ +|..|-.
T Consensus 152 ~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~-iYv~GG~ 230 (376)
T PRK14131 152 IFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNK-LWLINGE 230 (376)
T ss_pred HHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCE-EEEEeee
Q ss_pred CCCCCCCCC------CCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCc----------------
Q psy15269 401 NLGKLGHED------TGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSI---------------- 458 (1858)
Q Consensus 401 ~~GQLG~g~------~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~---------------- 458 (1858)
......... .........+..+...+.-...-+..+..+...+|++|++| |......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~G-G~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 231 IKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAG-GANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred ECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEee-ccCCCCChhhhhcCCcccccCCc
Q ss_pred --cccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEe
Q psy15269 459 --SFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWG 497 (1858)
Q Consensus 459 --~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG 497 (1858)
....-.....-.=..+..+-....+..++.-+|++|..|
T Consensus 310 ~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~G 350 (376)
T PRK14131 310 KSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIG 350 (376)
T ss_pred ceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEc
No 262
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=26.45 E-value=98 Score=30.95 Aligned_cols=36 Identities=0% Similarity=-0.040 Sum_probs=32.2
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
..+++|+|++-.++...+..|++.|+.+..+.|++.
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 477999999888889999999999999888999885
No 263
>PTZ00110 helicase; Provisional
Probab=25.06 E-value=1.7e+02 Score=39.03 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=47.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccccC-CCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFIG-NDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAARG-LDIp 1152 (1858)
..+||.++|++-|..+.+.+++. ++.+..++|+.+ ....... .+. ...|+|+|. ...++ +++.
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~---~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~ 276 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVP---KRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLR 276 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCC---HHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChh
Confidence 46899999999999888888763 577888999887 4433333 333 478999995 33333 4455
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
.+++||
T Consensus 277 ~v~~lV 282 (545)
T PTZ00110 277 RVTYLV 282 (545)
T ss_pred hCcEEE
Confidence 555444
No 264
>PRK09401 reverse gyrase; Reviewed
Probab=25.00 E-value=1.4e+02 Score=43.25 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=47.8
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC----CCeEEEE--ecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS----NMMTIPM--SNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~L--HG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
+.+++|.++|+.-+..+++.+++. ++.+..+ ||+++ ..++.+..++++++..+|+|+|.
T Consensus 123 g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~---~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 123 GKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLK---KKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcc---hhHHHHHHHHHhcCCCCEEEECH
Confidence 478999999999999999988864 4444444 55565 77888888999999999999995
No 265
>KOG0331|consensus
Probab=24.67 E-value=2.2e+02 Score=37.69 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=49.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccccC-CCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFIG-NDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAARG-LDIp 1152 (1858)
.+++|-++||+-|..+...+.+. ++.+.++.|+.+ ...+.+.+ ++ -+.|+|||. ...+| +|..
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~---~~~Q~~~l---~~-gvdiviaTPGRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAP---KGPQLRDL---ER-GVDVVIATPGRLIDLLEEGSLNLS 238 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCC---ccHHHHHH---hc-CCcEEEeCChHHHHHHHcCCcccc
Confidence 67999999999999998888763 556999999998 44443333 32 478999996 33334 4566
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
.|+++|
T Consensus 239 ~v~ylV 244 (519)
T KOG0331|consen 239 RVTYLV 244 (519)
T ss_pred ceeEEE
Confidence 666665
No 266
>KOG1240|consensus
Probab=24.43 E-value=9.7e+02 Score=34.86 Aligned_cols=165 Identities=20% Similarity=0.179 Sum_probs=83.1
Q ss_pred CceEEeecCce-EEEEE--cCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEE---EecCceEEEEecCCcE
Q psy15269 373 DVGAVSCGESH-TLVLS--QDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKV---CAGTSFSVALTWDGLV 446 (1858)
Q Consensus 373 ~I~~IAcG~~H-TlaLt--~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~I---aaG~~hSlALT~dG~V 446 (1858)
.+.+++....| +++++ .|| +|-+|-.-+ -.|.+.... .. ..-...+.++..+ .-|.++.++ ++||.|
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DG-tVKvW~~~k--~~~~~~s~r-S~--ltys~~~sr~~~vt~~~~~~~~Av~-t~DG~v 1122 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDG-TVKVWNLRK--LEGEGGSAR-SE--LTYSPEGSRVEKVTMCGNGDQFAVS-TKDGSV 1122 (1431)
T ss_pred cccceeecCCCCceEEEecCCc-eEEEeeehh--hhcCcceee-ee--EEEeccCCceEEEEeccCCCeEEEE-cCCCeE
Confidence 36688888888 77775 688 799996433 233321111 11 1111123334333 333344444 789999
Q ss_pred EEEeCCCCCCCccccccEEecCCC-CCCEEEEEEcC----ce-EEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeee
Q psy15269 447 FWWGLGLRSSSISFHTPVLVTGLS-SHQIVDVSIGD----SH-VLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVV 520 (1858)
Q Consensus 447 y~WGLG~gss~~~~~~P~~V~~l~-~~~Iv~Ia~G~----~H-tlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~ 520 (1858)
-..+.++.........-..++.+. ...+++.-+-. .| .++.|..+.+..|+-...--+ .+.=.
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-----------w~lk~ 1191 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-----------WRLKN 1191 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----------Hhhhc
Confidence 998866532211111112222221 12355443322 23 355667888999985431100 00001
Q ss_pred cCCCceEEEEEecCcceEEEeecCCCCcEEeeccCc
Q psy15269 521 GLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPL 556 (1858)
Q Consensus 521 ~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~ 556 (1858)
.+...-|.+|+.-...+.++. ..+.|.+..|--.|
T Consensus 1192 ~~~hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRF 1226 (1431)
T ss_pred CccccceeEEEecCCceEEEE-ecCCceEEEEEeec
Confidence 223344677776666665544 34678888885443
No 267
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=24.37 E-value=1e+03 Score=26.45 Aligned_cols=57 Identities=11% Similarity=0.157 Sum_probs=30.7
Q ss_pred EEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCc-eEEEEEe-CCeEEEEecC
Q psy15269 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHS-HSAAVTE-DGLLYTWGEG 349 (1858)
Q Consensus 280 HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~-HS~aLT~-dG~VYtWG~N 349 (1858)
..++...+|.++.|-.... .....+. .....|..+..... ..++... +|.++.|-..
T Consensus 65 ~l~~~~~~~~i~i~~~~~~-----------~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 65 YLASGSSDKTIRLWDLETG-----------ECVRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEEcCCCeEEEEEcCcc-----------cceEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 5555666899999965432 1111111 11224555554433 3444444 8899998654
No 268
>KOG2106|consensus
Probab=24.17 E-value=1.7e+03 Score=29.54 Aligned_cols=181 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred cCCEEEEEecCCc----EEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcC
Q psy15269 227 GQFCTFLLDSTGG----LLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLG 302 (1858)
Q Consensus 227 G~~hTlaLt~dG~----VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG 302 (1858)
|+.+-++++.+.. ||-|-++.....-...+..-....+......+. +.||..|..+-+-.|..+.=-.+-+.+
T Consensus 167 ~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nli-it~Gk~H~~Fw~~~~~~l~k~~~~fek-- 243 (626)
T KOG2106|consen 167 GGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLI-ITCGKGHLYFWTLRGGSLVKRQGIFEK-- 243 (626)
T ss_pred CCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEE-EEeCCceEEEEEccCCceEEEeecccc--
Q ss_pred CCCCcccccceeeecCCCCCcEEEEEec-CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecC
Q psy15269 303 HGNTLSQRRPKLIMGGLYGKRVTQVSAG-HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGE 381 (1858)
Q Consensus 303 ~g~~~~~~~P~~V~~~l~~~~IvqVa~G-~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~ 381 (1858)
.+.+.|..+..+ +.-.+-=+++|.++.|+.+.+- ..+-+...-|.
T Consensus 244 ----------------~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~------------------~~k~~~aH~gg 289 (626)
T KOG2106|consen 244 ----------------REKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR------------------ISKQVHAHDGG 289 (626)
T ss_pred ----------------ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce------------------EEeEeeecCCc
Q ss_pred ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEE
Q psy15269 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVF 447 (1858)
Q Consensus 382 ~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy 447 (1858)
-+++++..+| ++.+ |--+.-..--.+.-....+.+++.-.+ .|.-|+-|..-.++=|..+.+.
T Consensus 290 v~~L~~lr~G-tllS-GgKDRki~~Wd~~y~k~r~~elPe~~G-~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 290 VFSLCMLRDG-TLLS-GGKDRKIILWDDNYRKLRETELPEQFG-PIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred eEEEEEecCc-cEee-cCccceEEeccccccccccccCchhcC-CeeEEecCCCcEEEeeccceEE
No 269
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=24.12 E-value=1.3e+02 Score=30.25 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=33.8
Q ss_pred ceEEEEeCCccccccccCCCCCCceeEEEEEeecCCCCCeEEEEEeeeccCCCCCCCCCCccCCchh
Q psy15269 1526 QTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDMTVCETPRDLLCGEPYCAPVPI 1592 (1858)
Q Consensus 1526 ~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~ 1592 (1858)
..+.|+.+|+|+|.+-..- |+-+.+-..++ ..|. ++|. .+.+++|.|.|...
T Consensus 26 ~~vl~Fh~G~fiGt~t~~p------~~~~~v~~~~~--~~V~---V~Y~----~~~~~d~~c~psg~ 77 (89)
T PF14041_consen 26 QQVLFFHDGEFIGTATPDP------YGYIDVIRSTD--DTVT---VQYR----WYKPDDPNCCPSGT 77 (89)
T ss_pred eEEEEEECCEEcccCCccc------cCceeEEeeCC--CEEE---EEEE----eCCCCCCccCCCCc
Confidence 4678999999999775443 33444433343 4444 4454 55678999999864
No 270
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.08 E-value=2.2e+03 Score=30.36 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=75.6
Q ss_pred cCCEEEEEecCCcEEEEcccccCCCCCCCCCCc--eeecCc--cCcceEEEEE--ecCcEEEEEeeCCcEEEEeCCCCCC
Q psy15269 227 GQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLP--KRVPLE--AAIVSLSVSK--CSEAHVLTVTSEGEVYSWGVGEHGK 300 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P--~~V~~~--~~i~~Is~Ia--~G~~HtlaLT~dG~VysWG~N~~GQ 300 (1858)
...+.+++|++|++|..-...+-.......-.| ..+.+. +.+..+..+. -.....+++|.+|.+.-.-.+.+-.
T Consensus 545 t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 445578889999999884333222111111111 112222 2332222211 1223578889999887664433321
Q ss_pred cCCCCCcccccceeeecCCCCCcEEEEE--ecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEe
Q psy15269 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVS--AGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVS 378 (1858)
Q Consensus 301 LG~g~~~~~~~P~~V~~~l~~~~IvqVa--~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IA 378 (1858)
.... .......-.+..++.+. ....+.+++|++|++|..-.+.--..|........ ..+..-..|+.+.
T Consensus 625 ~~r~-------G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~--i~L~~~E~Vv~~~ 695 (800)
T TIGR01063 625 IRSN-------GIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRG--IKLKNEDFVVSLL 695 (800)
T ss_pred hccC-------CcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeec--ccCCCCCEEEEEE
Confidence 1000 00000001233344433 33456899999999998865544333332211111 1222222354443
Q ss_pred e--cCceEEEEEcCCCEEEEEe
Q psy15269 379 C--GESHTLVLSQDGHTVWSMG 398 (1858)
Q Consensus 379 c--G~~HTlaLt~dG~tVysWG 398 (1858)
+ ...+.+++|++|. +.-.-
T Consensus 696 ~v~~~~~ll~vT~~G~-~Kr~~ 716 (800)
T TIGR01063 696 VVSEESYLLIVTENGY-GKRTS 716 (800)
T ss_pred EeccccEEEEEecCCc-EEEEE
Confidence 3 2345677888884 55443
No 271
>KOG1587|consensus
Probab=23.74 E-value=1.9e+03 Score=29.57 Aligned_cols=18 Identities=17% Similarity=0.077 Sum_probs=14.0
Q ss_pred ecCceEEEEecCCcEEEE
Q psy15269 432 AGTSFSVALTWDGLVFWW 449 (1858)
Q Consensus 432 aG~~hSlALT~dG~Vy~W 449 (1858)
.-.++.++-|+.|.||..
T Consensus 358 ~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred CCCceEEEEcCCcEEEEE
Confidence 345678888999999984
No 272
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=23.68 E-value=2.8e+02 Score=29.66 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=16.0
Q ss_pred eeeeEecCCCceEEEEecCCeEEEecCCCC
Q psy15269 1409 IDSVSFDKEKCVCCTVECGGQSLIHGPGTR 1438 (1858)
Q Consensus 1409 v~~f~~D~~~~~~~~~~~~~~~~~~~~~~~ 1438 (1858)
|+=|.|||.+ .|.++| +++|...+.
T Consensus 85 IRliGfDp~g-krrv~s----fIVhRPng~ 109 (127)
T COG4451 85 IRLIGFDPKG-KRRVVS----FIVHRPNGN 109 (127)
T ss_pred EEEEEecCCC-ceEEEE----EEEECCCCC
Confidence 6779999988 555555 344444433
No 273
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=23.07 E-value=1.2e+02 Score=29.34 Aligned_cols=36 Identities=3% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGT 1117 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms 1117 (1858)
..++||||++..++...+..|++.|+. +..+.|++.
T Consensus 56 ~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 56 DKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 378999999999999999999999998 888899885
No 274
>KOG0278|consensus
Probab=22.87 E-value=1.2e+03 Score=28.39 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=43.5
Q ss_pred cCcceEEEEEecCcEEEEE-eeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe-cCceEEEEEeCCeE
Q psy15269 266 AAIVSLSVSKCSEAHVLTV-TSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA-GHSHSAAVTEDGLL 343 (1858)
Q Consensus 266 ~~i~~Is~Ia~G~~HtlaL-T~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~-G~~HS~aLT~dG~V 343 (1858)
..|+.+. -|-.+|++.- ++++.|--|-.... +.+.....+..+++.-. -..+.+.+...+.|
T Consensus 144 g~Ir~v~--wc~eD~~iLSSadd~tVRLWD~rTg--------------t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 144 GGIRTVL--WCHEDKCILSSADDKTVRLWDHRTG--------------TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred CcceeEE--EeccCceEEeeccCCceEEEEeccC--------------cEEEEEecCCCCcceeeccCCCEEEEecCcee
Confidence 4555554 3777777666 77899999965321 11221112222222221 13344444555678
Q ss_pred EEEecCCCCCCCCCCCCccccccccc
Q psy15269 344 YTWGEGDHGRLGHGDLKSRHTPTLVT 369 (1858)
Q Consensus 344 YtWG~N~~GQLG~G~~~~~~~P~~V~ 369 (1858)
-.|-.+.+|-| +....|..|.
T Consensus 208 ~Fwdaksf~~l-----Ks~k~P~nV~ 228 (334)
T KOG0278|consen 208 KFWDAKSFGLL-----KSYKMPCNVE 228 (334)
T ss_pred EEeccccccce-----eeccCccccc
Confidence 88887777655 3344455543
No 275
>KOG0649|consensus
Probab=22.80 E-value=1.4e+03 Score=27.66 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEeeCCcEEEEeCCCCCC-cCCCCCcccccceee
Q psy15269 282 LTVTSEGEVYSWGVGEHGK-LGHGNTLSQRRPKLI 315 (1858)
Q Consensus 282 laLT~dG~VysWG~N~~GQ-LG~g~~~~~~~P~~V 315 (1858)
+....||.||.|-.|..-. ++....-....|..+
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 4445679999999987755 443333334455555
No 276
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=22.54 E-value=3.4e+02 Score=29.21 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=48.7
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHH-HHHHHHHHHhcCCCcEEEecccc------ccCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHV-ECLELLNLFNTGKSSLVIMTLSD------FIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~-eR~~~L~~Fr~G~~~ILVATDVA------ARGLDI 1151 (1858)
.++||.++++.-++...+.+++. ++.+..+||+.+ .. +....+ .++..|+|+|.-. .+.+++
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~ 117 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQS---ISEDQREVL----SNQADILVTTPEQLLDLISNGKINI 117 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSC---HHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTG
T ss_pred ceEEEEeeccccccccccccccccccccccccccccccc---ccccccccc----cccccccccCcchhhcccccccccc
Confidence 48999999999999988888763 568999999886 33 222222 6678999999732 223455
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
..+++||
T Consensus 118 ~~~~~iV 124 (169)
T PF00270_consen 118 SRLSLIV 124 (169)
T ss_dssp TTESEEE
T ss_pred ccceeec
Confidence 5566555
No 277
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.19 E-value=2.3e+03 Score=29.90 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=81.3
Q ss_pred cCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCc--cCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCC
Q psy15269 227 GQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLE--AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHG 304 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~--~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g 304 (1858)
-...++++|.+|-|-..--..++ +.-+.+. ..+..+. .+.+..+.+++|++|++|.+..++-- .|.+
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~---------~saikLKegD~L~~~~-~~~t~d~LllfTs~Gr~yrf~v~eIP-~GR~ 561 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID---------LSTLKYKAGDSEKAII-EGKSNQKVVFIDSTGRSYALDPDNLP-SARG 561 (735)
T ss_pred CcceEEEEecCCEEEeccccccc---------hhccCcCCCCeEEEEE-EecCCCEEEEEECCCeEEEEEhHhcC-cCcc
Confidence 45677888999877643211111 1112222 2222222 23455578999999999999776542 2322
Q ss_pred CCcccccceeee-cCCCCCcEEEEEecCc--eEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCce--EEee
Q psy15269 305 NTLSQRRPKLIM-GGLYGKRVTQVSAGHS--HSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG--AVSC 379 (1858)
Q Consensus 305 ~~~~~~~P~~V~-~~l~~~~IvqVa~G~~--HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~--~IAc 379 (1858)
. ..|.... ..-.+..|+.+.+... +.+++|+.|..+-.-.+.+-....+...... +.....+. ....
T Consensus 562 a----GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~----Lk~~d~lv~v~~v~ 633 (735)
T TIGR01062 562 Q----GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKALIN----LPENASVIAPLPVN 633 (735)
T ss_pred C----CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeEEEE----eCCCCEEEEEEEEc
Confidence 1 2222221 1235677888877543 4778888886665543332211111100000 11111222 1223
Q ss_pred cC-ceEEEEEcCCCEEEEEeCCCCCCCCC
Q psy15269 380 GE-SHTLVLSQDGHTVWSMGSGNLGKLGH 407 (1858)
Q Consensus 380 G~-~HTlaLt~dG~tVysWG~N~~GQLG~ 407 (1858)
+. .+.++++.+|+ +..+-.++--.+|.
T Consensus 634 ~~dd~V~liT~~Gr-lLrf~v~EIp~~gR 661 (735)
T TIGR01062 634 GDSDMIAAITEAGR-MLVFPIDDLPELSK 661 (735)
T ss_pred CCCCEEEEEeCCCc-EEEEEHHHCCccCC
Confidence 33 35778899996 87776655444443
No 278
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.60 E-value=4.1e+02 Score=33.45 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=76.7
Q ss_pred EEEecCceEEEEEeCCe-EEEEecCCCCCCCCCCCCcc--------cccc-ccccCCCceEEeecCceEEEEEcCCCEEE
Q psy15269 326 QVSAGHSHSAAVTEDGL-LYTWGEGDHGRLGHGDLKSR--------HTPT-LVTELSDVGAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 326 qVa~G~~HS~aLT~dG~-VYtWG~N~~GQLG~G~~~~~--------~~P~-~V~~l~~I~~IAcG~~HTlaLt~dG~tVy 395 (1858)
.|.+|....++++.+|+ +|+-. -.|-+..+|+..+. ..|. .|..+.+-...+....+.++++.||+.+|
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~-T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~ 110 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAE-TFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLY 110 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEE-EEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEE
T ss_pred EeecccCCceeECCCCCEEEEEE-EEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEE
Confidence 67788888888888876 44422 22223333322211 1111 11111121333445778899999999888
Q ss_pred EEeCCCCCCCCCCCCCceeccEEeeecccccEEE----------EEecCceEEEEecCCcEEEEeCCCCCCCccccccEE
Q psy15269 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRK----------VCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVL 465 (1858)
Q Consensus 396 sWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~----------IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~ 465 (1858)
++-..- ...-..|. +...+++. .-.|......+..||.+....++...... ...+.
T Consensus 111 V~N~TP-----------a~SVtVVD-l~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~--~~~t~ 176 (342)
T PF06433_consen 111 VQNFTP-----------ATSVTVVD-LAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA--QKSTK 176 (342)
T ss_dssp EEEESS-----------SEEEEEEE-TTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE--EEEEE
T ss_pred EEccCC-----------CCeEEEEE-CCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe--Eeecc
Confidence 774211 11111111 11111111 12455555677788888888766444332 22223
Q ss_pred ecCCCCCCEEE---EEEcCceEEEEEeCCeEEEEeCC
Q psy15269 466 VTGLSSHQIVD---VSIGDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 466 V~~l~~~~Iv~---Ia~G~~HtlALt~dG~VYaWG~N 499 (1858)
+.......+.. ......+.++++-+|+||..-..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 33332222221 22356788889999999997643
No 279
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.03 E-value=2.5e+03 Score=29.85 Aligned_cols=209 Identities=13% Similarity=0.114 Sum_probs=100.8
Q ss_pred ecCcEEEEEeeCCcEEEEeCCCCCCc---CCCCCcccccceeeecCCCCCcEEEEEec-----CceEEEEEeCCeEEEEe
Q psy15269 276 CSEAHVLTVTSEGEVYSWGVGEHGKL---GHGNTLSQRRPKLIMGGLYGKRVTQVSAG-----HSHSAAVTEDGLLYTWG 347 (1858)
Q Consensus 276 ~G~~HtlaLT~dG~VysWG~N~~GQL---G~g~~~~~~~P~~V~~~l~~~~IvqVa~G-----~~HS~aLT~dG~VYtWG 347 (1858)
....+.+++|++|++|..-...--.. +.|..-. ..+. ...+++|+.+.+- ....+.+|++|.+.-.-
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~----~ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~ 618 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIV----NLLP-LQPDERITAILSVKEFDDGLYLFFATKNGVVKKTS 618 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHH----Hhcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEE
Confidence 45567889999999999843222111 1121111 1111 2355677776652 23577889999776553
Q ss_pred cCCCCC---CCCCCCCccccccccccCCCceEE--eecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec
Q psy15269 348 EGDHGR---LGHGDLKSRHTPTLVTELSDVGAV--SCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422 (1858)
Q Consensus 348 ~N~~GQ---LG~G~~~~~~~P~~V~~l~~I~~I--AcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l 422 (1858)
.+.+-. .|... ..+..-..++.+ +....+.+++|++|+ +|.+-..+--..|....... .+..-
T Consensus 619 l~~~~~~~r~G~~a-------iklke~D~lv~v~~~~~~d~lll~Ts~Gr-~~r~~v~eIp~~gr~~~Gv~----~i~L~ 686 (800)
T TIGR01063 619 LTEFSNIRSNGIIA-------IKLDDGDELISVRLTSGDDEVMLGSKNGK-AVRFPEEDVRPMGRAARGVR----GIKLK 686 (800)
T ss_pred hHHhhhhccCCccc-------ccCCCCCEEEEEEEeCCCCEEEEEECCCc-EEEEEhhhcCCcCCCCCCee----cccCC
Confidence 332211 11100 011111223332 333457889999997 88776554433343222111 12222
Q ss_pred ccccEEEEEec--CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCC--CCCEEEEE--EcCceEEEEEeCCeEEEE
Q psy15269 423 RKFRVRKVCAG--TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLS--SHQIVDVS--IGDSHVLALSQYNEVYAW 496 (1858)
Q Consensus 423 ~~~~Iv~IaaG--~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~--~~~Iv~Ia--~G~~HtlALt~dG~VYaW 496 (1858)
.+.+|+.+..- ..+.+++|++|.+.-.-+..-..............+. +..++.+. -+....+++|.+|.+.-+
T Consensus 687 ~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf 766 (800)
T TIGR01063 687 NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRT 766 (800)
T ss_pred CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEe
Confidence 34556665543 3356788888877666411000000000000111111 12333332 234457788888888877
Q ss_pred eCCCC
Q psy15269 497 GSNTM 501 (1858)
Q Consensus 497 G~N~~ 501 (1858)
-.++-
T Consensus 767 ~~~eI 771 (800)
T TIGR01063 767 SVQDV 771 (800)
T ss_pred eHhhC
Confidence 76543
No 280
>KOG0949|consensus
Probab=20.96 E-value=1.2e+02 Score=42.15 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=63.8
Q ss_pred EEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC-CCCChhhhhhhc---cCcc----eEEEE
Q psy15269 1111 PMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN-LPLSINHYVFQI---AGHK----EAIAF 1182 (1858)
Q Consensus 1111 ~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD-lP~~~e~YIHRI---ag~~----~aitf 1182 (1858)
.-|.+|+ ...|..+---||.|...||+||.-.+-||+.|--+.|.--| +.-+|-.|-|-. |++| ..+.|
T Consensus 967 ~HHaglN---r~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 967 VHHAGLN---RKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred ccccccc---hHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 4689999 99999888899999999999999999999999888888766 555777777755 4444 23444
Q ss_pred ec-CcccHHHHHHHHHHHhhcCCCC
Q psy15269 1183 YD-PVADIGLASSLIKLLEYSNKHV 1206 (1858)
Q Consensus 1183 vt-~~~e~~~l~~Ie~~l~~~~q~i 1206 (1858)
.. | ..++.+++-.....+
T Consensus 1044 mgiP------~~kv~rLlts~L~di 1062 (1330)
T KOG0949|consen 1044 MGIP------RQKVQRLLTSLLPDI 1062 (1330)
T ss_pred EeCc------HHHHHHHHHHhhhcc
Confidence 43 3 245555555544433
No 281
>PRK13766 Hef nuclease; Provisional
Probab=20.91 E-value=2e+02 Score=39.74 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=52.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC-CC---eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc------ccccCCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS-NM---MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL------SDFIGNDF 1151 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~-g~---~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD------VAARGLDI 1151 (1858)
..++||.++|+.-++...+.+++. ++ .+..++|+.+ ..+|.+... +.+|+|+|. +...-+++
T Consensus 58 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~---~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~ 129 (773)
T PRK13766 58 GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVS---PEKRAELWE-----KAKVIVATPQVIENDLIAGRISL 129 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCC---HHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCCh
Confidence 378999999999887777777652 33 7888999998 777765543 357999996 33345677
Q ss_pred CCcceEEEc
Q psy15269 1152 TNVEQVIIY 1160 (1858)
Q Consensus 1152 p~V~~VINy 1160 (1858)
.++++||=-
T Consensus 130 ~~~~liVvD 138 (773)
T PRK13766 130 EDVSLLIFD 138 (773)
T ss_pred hhCcEEEEE
Confidence 788887743
No 282
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=20.43 E-value=1.3e+02 Score=30.07 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=31.1
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCC
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGT 1117 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms 1117 (1858)
+..++||+|++-.++...+..|++.|+. +..+.|++.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4467999999988888889999999995 888999875
No 283
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.30 E-value=2.5e+03 Score=29.58 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=75.9
Q ss_pred cCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cCceEEEEEeCCeEEEEecCCCCCC
Q psy15269 277 SEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GHSHSAAVTEDGLLYTWGEGDHGRL 354 (1858)
Q Consensus 277 G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~~HS~aLT~dG~VYtWG~N~~GQL 354 (1858)
-...++++|.+|-|-.--...++. ..+. .-.+..++.+.. +..+.+++|++|++|.+..+.-- .
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~~------------saik-LKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDIDL------------STLK-YKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred CcceEEEEecCCEEEeccccccch------------hccC-cCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 455778888888776543333221 1111 112344544443 34568999999999999765432 1
Q ss_pred CCCCCCccccccccccCCCceEEeecCc--eEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEE--E
Q psy15269 355 GHGDLKSRHTPTLVTELSDVGAVSCGES--HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRK--V 430 (1858)
Q Consensus 355 G~G~~~~~~~P~~V~~l~~I~~IAcG~~--HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~--I 430 (1858)
|.+.......-..+..-..|+.+.+... +.+++|+.|. ++-.--+++-....+...... +. .+..++. .
T Consensus 559 GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~Gy-GKrt~lse~~~~~RaGKgvi~----Lk--~~d~lv~v~~ 631 (735)
T TIGR01062 559 ARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGY-GFLCNFNDLIARNKAGKALIN----LP--ENASVIAPLP 631 (735)
T ss_pred CccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCc-EEEEEhHhccccCcCCeEEEE----eC--CCCEEEEEEE
Confidence 2221111111011122233666665543 4778888884 665543333222221111111 11 1112221 1
Q ss_pred EecC-ceEEEEecCCcEEEEe
Q psy15269 431 CAGT-SFSVALTWDGLVFWWG 450 (1858)
Q Consensus 431 aaG~-~hSlALT~dG~Vy~WG 450 (1858)
..+. ...+++|++|++..+-
T Consensus 632 v~~~dd~V~liT~~GrlLrf~ 652 (735)
T TIGR01062 632 VNGDSDMIAAITEAGRMLVFP 652 (735)
T ss_pred EcCCCCEEEEEeCCCcEEEEE
Confidence 2233 3577899999999887
Done!