Query psy15269
Match_columns 1858
No_of_seqs 1070 out of 5229
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 2.7E-58 9.3E-63 561.8 35.3 355 183-541 15-385 (389)
2 1a12_A RCC1, regulator of chro 100.0 5.9E-56 2E-60 544.8 41.4 352 180-541 19-407 (413)
3 4d9s_A UVB-resistance protein 100.0 1.3E-55 4.6E-60 541.1 41.1 346 212-565 9-366 (406)
4 3mvd_K Regulator of chromosome 100.0 1.3E-54 4.4E-59 533.9 43.2 351 180-542 35-417 (423)
5 3of7_A Regulator of chromosome 100.0 1.4E-54 4.8E-59 542.2 39.5 356 182-542 23-449 (473)
6 4d9s_A UVB-resistance protein 100.0 1.9E-54 6.3E-59 531.0 39.9 338 180-522 27-378 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.7E-52 9.3E-57 508.9 32.2 335 223-565 5-354 (389)
8 3mvd_K Regulator of chromosome 100.0 7.7E-52 2.6E-56 509.3 33.9 334 218-565 23-383 (423)
9 1a12_A RCC1, regulator of chro 100.0 2.3E-51 7.9E-56 504.1 32.8 329 223-564 12-373 (413)
10 3of7_A Regulator of chromosome 100.0 3.9E-50 1.3E-54 502.1 29.7 336 220-564 11-413 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 5.4E-43 1.8E-47 410.2 33.9 269 188-541 2-270 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 3E-38 1E-42 370.0 30.7 249 239-562 3-252 (282)
13 2db3_A ATP-dependent RNA helic 100.0 2.8E-34 9.6E-39 355.0 20.9 312 841-1212 108-433 (434)
14 2j0s_A ATP-dependent RNA helic 99.9 5E-28 1.7E-32 294.5 16.5 287 869-1210 106-406 (410)
15 2i4i_A ATP-dependent RNA helic 99.9 1.4E-27 4.9E-32 290.4 19.2 285 869-1208 102-404 (417)
16 3sqw_A ATP-dependent RNA helic 99.9 4.2E-26 1.4E-30 291.8 20.7 306 841-1204 75-415 (579)
17 3eiq_A Eukaryotic initiation f 99.9 2E-26 6.7E-31 279.8 13.8 288 869-1211 109-411 (414)
18 3i5x_A ATP-dependent RNA helic 99.9 1.4E-25 4.7E-30 285.2 19.8 307 841-1205 126-467 (563)
19 1s2m_A Putative ATP-dependent 99.9 2.5E-25 8.4E-30 269.6 17.2 288 870-1212 91-390 (400)
20 1xti_A Probable ATP-dependent 99.9 3.6E-25 1.2E-29 266.7 17.9 288 869-1209 77-380 (391)
21 3fht_A ATP-dependent RNA helic 99.9 1.6E-24 5.6E-29 262.5 18.9 283 870-1208 97-401 (412)
22 1hv8_A Putative ATP-dependent 99.9 2.8E-24 9.6E-29 255.7 19.8 282 868-1207 74-365 (367)
23 2p6n_A ATP-dependent RNA helic 99.9 3E-24 1E-28 237.8 16.0 167 1040-1209 8-184 (191)
24 3fmp_B ATP-dependent RNA helic 99.9 5.2E-26 1.8E-30 283.7 1.2 283 870-1208 164-468 (479)
25 3pey_A ATP-dependent RNA helic 99.9 2.3E-23 8E-28 250.3 20.5 282 869-1208 76-379 (395)
26 1fuu_A Yeast initiation factor 99.9 6.5E-25 2.2E-29 264.4 4.4 285 869-1209 90-388 (394)
27 1tf5_A Preprotein translocase 99.9 4.3E-24 1.5E-28 276.1 11.7 282 870-1188 126-547 (844)
28 3toj_A SET1/ASH2 histone methy 99.9 2.1E-23 7E-28 235.1 13.1 151 1412-1569 13-173 (213)
29 3oiy_A Reverse gyrase helicase 99.9 2.3E-23 7.7E-28 254.8 11.6 270 869-1200 65-376 (414)
30 2hjv_A ATP-dependent RNA helic 99.9 4.3E-22 1.5E-26 214.3 18.4 148 1055-1206 5-161 (163)
31 1t5i_A C_terminal domain of A 99.9 3.6E-22 1.2E-26 217.2 16.1 148 1058-1208 4-160 (172)
32 2fsf_A Preprotein translocase 99.9 1.6E-22 5.5E-27 260.8 15.4 283 870-1187 117-584 (853)
33 4ddu_A Reverse gyrase; topoiso 99.9 6.7E-23 2.3E-27 278.2 12.5 237 869-1164 122-388 (1104)
34 3emw_A SPRY domain-containing 99.9 2E-22 6.8E-27 227.6 13.7 145 1411-1557 43-204 (217)
35 2yyo_A SPRY domain-containing 99.9 5.8E-22 2E-26 216.1 15.9 144 1421-1569 10-160 (171)
36 3eaq_A Heat resistant RNA depe 99.9 7.4E-22 2.5E-26 221.8 16.3 144 1060-1207 6-158 (212)
37 2rb4_A ATP-dependent RNA helic 99.9 2E-21 6.8E-26 211.3 19.0 149 1056-1208 4-168 (175)
38 1fuk_A Eukaryotic initiation f 99.9 1.6E-21 5.5E-26 210.0 17.0 148 1059-1210 3-160 (165)
39 2z0m_A 337AA long hypothetical 99.9 8.1E-22 2.8E-26 232.1 15.0 269 871-1201 59-336 (337)
40 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-21 4.6E-26 215.3 15.5 150 1055-1208 15-174 (185)
41 3i32_A Heat resistant RNA depe 99.9 2.1E-21 7.3E-26 229.3 16.2 146 1059-1208 2-156 (300)
42 1nkt_A Preprotein translocase 99.8 1.4E-21 4.8E-26 252.2 12.2 276 870-1186 154-617 (922)
43 3fho_A ATP-dependent RNA helic 99.8 7.2E-22 2.5E-26 249.1 6.7 282 870-1209 191-493 (508)
44 2v1x_A ATP-dependent DNA helic 99.8 1E-20 3.4E-25 242.7 16.7 267 870-1195 86-382 (591)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 2.3E-21 7.8E-26 263.0 9.4 266 870-1201 101-468 (1054)
46 2jk9_A SPRY domain-containing 99.8 7.3E-20 2.5E-24 206.0 16.6 159 1411-1574 32-209 (212)
47 2ykg_A Probable ATP-dependent 99.8 1.6E-21 5.4E-26 253.9 3.2 335 833-1195 36-524 (696)
48 2afj_A Gene rich cluster, C9 g 99.8 1.9E-20 6.4E-25 212.8 9.8 162 1411-1577 40-218 (226)
49 1oyw_A RECQ helicase, ATP-depe 99.8 1.2E-19 4.1E-24 229.7 16.2 263 871-1196 68-352 (523)
50 2whx_A Serine protease/ntpase/ 99.8 1.9E-20 6.6E-25 241.0 9.0 245 870-1209 217-503 (618)
51 3tbk_A RIG-I helicase domain; 99.8 1E-19 3.5E-24 228.7 13.2 122 1070-1195 370-515 (555)
52 2yjt_D ATP-dependent RNA helic 99.7 5.8E-21 2E-25 206.8 0.0 143 1059-1205 3-155 (170)
53 4a2p_A RIG-I, retinoic acid in 99.8 1.3E-19 4.3E-24 228.5 11.9 113 1070-1185 371-507 (556)
54 3l9o_A ATP-dependent RNA helic 99.8 3.4E-19 1.2E-23 242.2 12.7 270 870-1207 229-615 (1108)
55 2d7d_A Uvrabc system protein B 99.8 6.5E-18 2.2E-22 219.3 20.9 127 1082-1212 445-590 (661)
56 4gl2_A Interferon-induced heli 99.7 1.3E-18 4.6E-23 226.5 11.5 101 1082-1185 400-517 (699)
57 3o8b_A HCV NS3 protease/helica 99.7 2.1E-19 7E-24 230.8 1.1 247 870-1204 259-535 (666)
58 4a2q_A RIG-I, retinoic acid in 99.7 4.7E-18 1.6E-22 225.3 13.3 113 1070-1185 612-748 (797)
59 1yks_A Genome polyprotein [con 99.7 6.3E-19 2.2E-23 218.7 0.8 256 843-1208 25-323 (440)
60 4a2w_A RIG-I, retinoic acid in 99.7 7.3E-18 2.5E-22 226.7 9.3 112 1071-1185 613-748 (936)
61 2wv9_A Flavivirin protease NS2 99.7 6.4E-18 2.2E-22 219.2 7.3 117 1082-1207 410-556 (673)
62 1c4o_A DNA nucleotide excision 99.7 1.4E-16 4.7E-21 207.0 18.4 125 1082-1210 439-582 (664)
63 2xgj_A ATP-dependent RNA helic 99.7 6.5E-17 2.2E-21 218.2 15.0 261 870-1195 131-508 (1010)
64 2eyq_A TRCF, transcription-rep 99.7 1.6E-16 5.3E-21 217.3 15.0 254 870-1185 654-921 (1151)
65 4a4z_A Antiviral helicase SKI2 99.7 2.9E-16 9.8E-21 211.9 16.6 240 870-1173 84-471 (997)
66 1wp9_A ATP-dependent RNA helic 99.6 1.5E-16 5.1E-21 194.7 9.8 113 1070-1185 342-474 (494)
67 2z83_A Helicase/nucleoside tri 99.6 1.6E-17 5.6E-22 207.0 0.6 176 949-1185 110-312 (459)
68 2jlq_A Serine protease subunit 99.6 9.3E-17 3.2E-21 199.8 4.9 95 1082-1184 188-309 (451)
69 3rc3_A ATP-dependent RNA helic 99.6 8.8E-16 3E-20 199.0 12.7 219 872-1173 183-423 (677)
70 2va8_A SSO2462, SKI2-type heli 99.6 1.6E-14 5.3E-19 189.3 22.6 253 870-1185 77-407 (715)
71 3jux_A Protein translocase sub 99.6 1.4E-14 4.7E-19 184.2 19.8 165 1029-1201 416-605 (822)
72 2zj8_A DNA helicase, putative 99.6 3.1E-15 1E-19 196.3 12.8 273 870-1207 70-405 (720)
73 2xau_A PRE-mRNA-splicing facto 99.6 3.5E-16 1.2E-20 206.1 1.9 250 870-1185 142-442 (773)
74 1gm5_A RECG; helicase, replica 99.6 5.1E-16 1.7E-20 204.0 2.6 254 870-1185 419-696 (780)
75 2p6r_A Afuhel308 helicase; pro 99.6 9.3E-15 3.2E-19 191.2 14.3 254 870-1185 70-387 (702)
76 2v6i_A RNA helicase; membrane, 99.5 3.3E-15 1.1E-19 184.9 5.1 84 1082-1173 171-271 (431)
77 2oca_A DAR protein, ATP-depend 99.5 1.8E-14 6.3E-19 180.9 9.0 241 870-1173 159-436 (510)
78 1z5z_A Helicase of the SNF2/RA 99.5 1.8E-13 6.2E-18 159.6 13.5 115 1068-1185 93-223 (271)
79 2vok_A 52 kDa RO protein; poly 99.5 4.9E-13 1.7E-17 147.7 16.2 144 1410-1559 9-172 (188)
80 3dmq_A RNA polymerase-associat 99.4 6.7E-13 2.3E-17 179.2 16.9 104 1067-1173 485-594 (968)
81 2wl1_A Pyrin, marenostrin; amy 99.4 1.2E-12 4E-17 145.2 15.8 142 1411-1558 14-175 (191)
82 2fbe_A Predicted: similar to R 99.4 1.7E-12 6E-17 144.8 17.2 143 1411-1558 11-172 (201)
83 3uv9_A TRIM5alpha, tripartite 99.4 8.7E-13 3E-17 145.6 13.3 141 1411-1557 13-173 (186)
84 3h1t_A Type I site-specific re 99.4 3.1E-13 1.1E-17 173.2 9.2 87 1083-1173 440-537 (590)
85 2fwr_A DNA repair protein RAD2 99.4 2.1E-14 7.3E-19 178.6 -3.9 109 1069-1185 333-453 (472)
86 3kb5_A Tripartite motif-contai 99.3 1.1E-11 3.9E-16 137.5 15.5 143 1410-1557 12-179 (193)
87 4f92_B U5 small nuclear ribonu 99.2 3.5E-11 1.2E-15 169.6 17.4 295 833-1193 950-1314(1724)
88 4f92_B U5 small nuclear ribonu 99.2 2.5E-11 8.6E-16 171.1 14.0 273 867-1192 133-478 (1724)
89 1z63_A Helicase of the SNF2/RA 99.2 6.8E-11 2.3E-15 148.2 14.2 115 1068-1185 322-452 (500)
90 1z3i_X Similar to RAD54-like; 99.1 4.2E-10 1.4E-14 146.1 16.7 126 1073-1201 404-544 (644)
91 2w00_A HSDR, R.ECOR124I; ATP-b 99.0 3.8E-10 1.3E-14 152.3 7.0 90 1083-1173 538-686 (1038)
92 4b3n_A Maltose-binding peripla 98.9 2.7E-09 9.2E-14 137.5 13.4 141 1412-1556 412-592 (602)
93 3mwy_W Chromo domain-containin 98.9 2.9E-09 1E-13 141.4 12.6 127 1071-1200 556-699 (800)
94 2e63_A KIAA1787 protein; struc 98.7 1.2E-07 4E-12 103.0 14.0 148 1412-1568 7-169 (170)
95 3fe2_A Probable ATP-dependent 98.7 3E-09 1E-13 121.0 1.1 158 841-1055 81-240 (242)
96 1wrb_A DJVLGB; RNA helicase, D 98.5 2.8E-08 9.7E-13 113.5 3.2 169 841-1063 75-252 (253)
97 3fmo_B ATP-dependent RNA helic 98.5 3.3E-08 1.1E-12 116.7 2.6 132 870-1054 164-299 (300)
98 2pl3_A Probable ATP-dependent 98.4 9.4E-08 3.2E-12 107.9 3.8 155 841-1054 77-234 (236)
99 3ly5_A ATP-dependent RNA helic 98.4 9.9E-08 3.4E-12 110.2 3.8 151 841-1049 106-260 (262)
100 3iuy_A Probable ATP-dependent 98.3 1.2E-07 4E-12 106.5 2.6 134 867-1052 93-228 (228)
101 3bor_A Human initiation factor 98.3 1.4E-07 4.8E-12 107.0 3.1 134 869-1053 99-235 (237)
102 3ber_A Probable ATP-dependent 98.3 1.2E-07 4E-12 108.8 1.6 151 841-1053 95-248 (249)
103 2gxq_A Heat resistant RNA depe 98.2 4.7E-07 1.6E-11 99.6 2.3 133 868-1053 72-206 (207)
104 1q0u_A Bstdead; DEAD protein, 98.1 4.1E-07 1.4E-11 101.5 0.4 138 869-1053 73-212 (219)
105 2oxc_A Probable ATP-dependent 98.0 9.9E-07 3.4E-11 99.4 1.6 134 869-1053 93-229 (230)
106 1vec_A ATP-dependent RNA helic 98.0 1.5E-06 5E-11 95.7 2.7 132 869-1050 72-205 (206)
107 2yue_A Protein neuralized; str 98.0 3.3E-05 1.1E-09 83.8 12.1 141 1412-1570 9-161 (168)
108 1qde_A EIF4A, translation init 98.0 2E-06 6.9E-11 95.9 2.4 135 869-1055 83-219 (224)
109 3dkp_A Probable ATP-dependent 97.9 1.9E-06 6.4E-11 97.8 1.8 137 868-1055 98-243 (245)
110 1t6n_A Probable ATP-dependent 97.8 3.4E-06 1.2E-10 93.9 -0.1 133 870-1052 84-220 (220)
111 2ipc_A Preprotein translocase 97.2 0.003 1E-07 83.0 16.7 80 870-962 122-213 (997)
112 2vl7_A XPD; helicase, unknown 96.9 0.00098 3.4E-08 84.9 7.5 80 1083-1171 385-471 (540)
113 1p22_A F-BOX/WD-repeat protein 95.7 4.1 0.00014 49.0 29.9 238 219-500 174-414 (435)
114 1p22_A F-BOX/WD-repeat protein 94.7 10 0.00035 45.5 34.0 229 220-499 135-364 (435)
115 2ovr_B FBW7, F-BOX/WD repeat p 93.5 17 0.00057 43.6 37.9 254 184-500 135-391 (445)
116 2ovr_B FBW7, F-BOX/WD repeat p 92.8 21 0.00072 42.8 35.4 223 222-500 123-348 (445)
117 1gxr_A ESG1, transducin-like e 92.5 17 0.00057 40.9 35.3 305 184-552 17-333 (337)
118 3llm_A ATP-dependent RNA helic 92.0 0.013 4.5E-07 66.1 -2.8 121 870-1048 111-232 (235)
119 2zwa_A Leucine carboxyl methyl 90.8 12 0.0004 49.1 22.6 151 331-499 441-616 (695)
120 4a11_B DNA excision repair pro 90.0 33 0.0011 39.7 32.0 292 220-554 45-363 (408)
121 2zwa_A Leucine carboxyl methyl 89.4 7.6 0.00026 50.8 19.3 63 278-348 441-508 (695)
122 1k3i_A Galactose oxidase precu 89.1 20 0.00068 46.2 22.8 73 481-558 457-533 (656)
123 4gbf_A Phikz131; 7-bladed beta 88.1 0.55 1.9E-05 53.1 5.9 69 322-402 309-377 (400)
124 1k3i_A Galactose oxidase precu 87.2 19 0.00065 46.3 20.8 69 435-504 458-535 (656)
125 4a15_A XPD helicase, ATP-depen 86.8 0.53 1.8E-05 60.9 5.8 77 1082-1165 448-528 (620)
126 4gbf_A Phikz131; 7-bladed beta 86.5 1.3 4.6E-05 50.1 7.9 68 269-350 309-376 (400)
127 3odt_A Protein DOA1; ubiquitin 85.6 48 0.0016 36.6 34.2 267 220-554 20-294 (313)
128 3hgt_A HDA1 complex subunit 3; 85.0 3.6 0.00012 49.0 11.1 107 1071-1185 112-236 (328)
129 1gm5_A RECG; helicase, replica 82.7 2.5 8.5E-05 56.2 9.4 75 1081-1158 416-495 (780)
130 3mmy_A MRNA export factor; mRN 82.3 71 0.0024 36.0 28.2 235 219-499 40-303 (368)
131 3no2_A Uncharacterized protein 78.3 97 0.0033 35.2 24.6 165 320-506 86-267 (276)
132 4aez_A CDC20, WD repeat-contai 78.2 1.1E+02 0.0039 35.8 28.4 266 222-553 97-377 (401)
133 3oiy_A Reverse gyrase helicase 76.1 5.5 0.00019 48.1 8.9 61 1081-1144 63-126 (414)
134 4g56_B MGC81050 protein; prote 76.0 1.2E+02 0.0043 35.2 30.9 223 278-554 105-341 (357)
135 3sfz_A APAF-1, apoptotic pepti 75.9 1.6E+02 0.0054 40.3 24.3 185 277-500 1014-1207(1249)
136 4ddu_A Reverse gyrase; topoiso 74.3 4.9 0.00017 55.4 8.6 74 1082-1159 121-202 (1104)
137 1sq9_A Antiviral protein SKI8; 73.5 1.4E+02 0.0046 34.5 29.2 27 425-451 292-320 (397)
138 3zwl_B Eukaryotic translation 72.8 1.3E+02 0.0044 33.9 29.3 122 219-349 75-205 (369)
139 3mkq_A Coatomer beta'-subunit; 72.7 2.2E+02 0.0076 36.5 26.0 220 278-553 25-256 (814)
140 3k26_A Polycomb protein EED; W 71.7 1.4E+02 0.0047 33.7 27.4 256 219-498 70-364 (366)
141 3v7d_B Cell division control p 70.6 1.8E+02 0.0061 34.6 34.1 235 223-500 127-381 (464)
142 1pgu_A Actin interacting prote 67.6 2.3E+02 0.0078 34.7 28.2 147 374-552 449-610 (615)
143 2eyq_A TRCF, transcription-rep 66.6 12 0.00041 51.9 9.8 75 1081-1158 651-730 (1151)
144 3crv_A XPD/RAD3 related DNA he 66.1 11 0.00038 47.8 8.8 73 1083-1165 394-474 (551)
145 3vl1_A 26S proteasome regulato 64.9 2.1E+02 0.0071 33.2 30.5 99 436-553 261-362 (420)
146 1oyw_A RECQ helicase, ATP-depe 64.5 13 0.00043 47.0 8.8 62 1079-1143 62-123 (523)
147 3ii7_A Kelch-like protein 7; p 64.0 43 0.0015 38.1 12.5 18 481-499 239-256 (306)
148 2aq5_A Coronin-1A; WD40 repeat 63.8 2.2E+02 0.0076 33.2 27.0 184 285-500 54-254 (402)
149 2aq5_A Coronin-1A; WD40 repeat 63.8 2.2E+02 0.0076 33.2 25.2 145 186-349 55-206 (402)
150 3mmy_A MRNA export factor; mRN 63.7 1.9E+02 0.0066 32.4 26.0 181 279-500 55-247 (368)
151 1zgk_A Kelch-like ECH-associat 61.1 1.1E+02 0.0038 34.8 15.3 17 331-348 113-129 (308)
152 3jro_A Fusion protein of prote 61.0 3.7E+02 0.013 34.8 22.4 187 280-500 23-238 (753)
153 1t6n_A Probable ATP-dependent 60.7 20 0.00068 39.1 8.5 70 1083-1158 83-163 (220)
154 1gxr_A ESG1, transducin-like e 60.6 2.1E+02 0.007 31.7 33.8 274 225-553 8-293 (337)
155 2v1x_A ATP-dependent DNA helic 58.6 15 0.00052 47.1 8.1 63 1079-1144 81-145 (591)
156 3fvz_A Peptidyl-glycine alpha- 57.2 2.6E+02 0.009 31.9 20.6 20 227-246 24-43 (329)
157 1rif_A DAR protein, DNA helica 56.7 0.97 3.3E-05 52.0 -3.1 99 871-1002 160-258 (282)
158 2woz_A Kelch repeat and BTB do 56.5 1.5E+02 0.0052 33.8 15.5 17 331-348 101-117 (318)
159 4asc_A Kelch repeat and BTB do 56.1 36 0.0012 39.1 10.0 16 332-348 91-106 (315)
160 2xyi_A Probable histone-bindin 56.1 3.1E+02 0.011 32.5 22.8 149 383-554 196-351 (430)
161 3fe2_A Probable ATP-dependent 56.0 24 0.00084 39.2 8.3 69 1083-1158 103-181 (242)
162 4a11_B DNA excision repair pro 53.5 3E+02 0.01 31.4 29.9 249 219-501 100-366 (408)
163 2pm9_A Protein WEB1, protein t 53.3 3.1E+02 0.011 31.5 25.3 320 186-552 43-410 (416)
164 1r5m_A SIR4-interacting protei 53.2 3.1E+02 0.01 31.4 28.7 136 278-450 217-358 (425)
165 3v7d_B Cell division control p 52.0 3.6E+02 0.012 31.9 38.1 268 184-500 138-421 (464)
166 3jro_A Fusion protein of prote 52.0 5E+02 0.017 33.6 25.1 193 278-501 67-286 (753)
167 3mkq_A Coatomer beta'-subunit; 51.6 4.8E+02 0.017 33.3 31.3 183 276-500 65-259 (814)
168 3bor_A Human initiation factor 51.6 18 0.00062 40.2 6.3 70 1083-1158 99-178 (237)
169 3odt_A Protein DOA1; ubiquitin 51.1 2.8E+02 0.0095 30.3 31.3 219 277-553 28-252 (313)
170 1yfq_A Cell cycle arrest prote 50.2 3.1E+02 0.01 30.6 30.2 250 220-499 13-281 (342)
171 3ber_A Probable ATP-dependent 49.4 45 0.0015 37.5 9.2 69 1083-1158 112-191 (249)
172 2gxq_A Heat resistant RNA depe 48.5 37 0.0013 36.3 8.0 69 1083-1158 73-149 (207)
173 3b6e_A Interferon-induced heli 47.7 8.7 0.0003 41.4 2.8 91 869-981 83-182 (216)
174 3zwl_B Eukaryotic translation 47.0 3.4E+02 0.012 30.2 31.5 197 220-451 34-247 (369)
175 4ggc_A P55CDC, cell division c 46.8 3.3E+02 0.011 29.9 23.6 265 183-496 40-311 (318)
176 1sq9_A Antiviral protein SKI8; 46.7 3.8E+02 0.013 30.6 32.8 246 219-500 17-322 (397)
177 4gqb_B Methylosome protein 50; 46.1 4E+02 0.014 30.8 28.9 223 277-553 92-328 (344)
178 1q7f_A NHL, brain tumor CG1071 45.9 3.3E+02 0.011 29.8 22.1 15 436-450 210-224 (286)
179 1r5m_A SIR4-interacting protei 45.9 3.9E+02 0.013 30.5 29.9 291 220-553 110-422 (425)
180 3gre_A Serine/threonine-protei 45.9 4.2E+02 0.014 30.9 23.0 163 219-399 64-243 (437)
181 3iuy_A Probable ATP-dependent 45.8 30 0.001 37.9 6.9 69 1083-1158 95-172 (228)
182 1vec_A ATP-dependent RNA helic 45.6 41 0.0014 36.0 7.8 69 1083-1158 72-151 (206)
183 1yfq_A Cell cycle arrest prote 45.2 3.6E+02 0.012 30.0 28.6 192 278-501 23-226 (342)
184 3jrp_A Fusion protein of prote 45.1 3.7E+02 0.013 30.1 26.7 239 220-500 13-287 (379)
185 2oxc_A Probable ATP-dependent 45.0 31 0.0011 38.0 6.9 68 1083-1158 93-171 (230)
186 3i2n_A WD repeat-containing pr 44.3 3.7E+02 0.013 29.9 32.3 241 279-552 81-349 (357)
187 3sfz_A APAF-1, apoptotic pepti 43.8 7.8E+02 0.027 33.4 28.4 138 332-500 1016-1158(1249)
188 2pl3_A Probable ATP-dependent 43.0 38 0.0013 37.3 7.2 69 1082-1158 97-176 (236)
189 4aez_A CDC20, WD repeat-contai 42.6 4.6E+02 0.016 30.5 30.2 222 276-553 101-333 (401)
190 3no0_A DNA gyrase subunit A; D 42.4 4.4E+02 0.015 30.2 22.5 198 228-450 35-243 (276)
191 4g56_B MGC81050 protein; prote 41.3 4.7E+02 0.016 30.2 32.5 238 219-502 95-345 (357)
192 3k26_A Polycomb protein EED; W 41.1 4.2E+02 0.014 29.6 31.2 242 280-552 87-362 (366)
193 3ly5_A ATP-dependent RNA helic 40.7 62 0.0021 36.6 8.6 70 1082-1158 126-206 (262)
194 4gga_A P55CDC, cell division c 40.6 5.1E+02 0.017 30.4 30.5 260 229-552 116-391 (420)
195 3no0_A DNA gyrase subunit A; D 40.2 4.7E+02 0.016 29.9 25.3 233 229-505 2-251 (276)
196 1xti_A Probable ATP-dependent 39.6 59 0.002 38.2 8.6 70 1083-1158 77-157 (391)
197 3sjl_D Methylamine dehydrogena 38.9 6E+02 0.02 30.7 18.6 259 221-496 72-349 (386)
198 3no2_A Uncharacterized protein 37.9 4.8E+02 0.016 29.3 26.7 112 374-499 90-205 (276)
199 2xn4_A Kelch-like protein 2; s 37.5 1E+02 0.0035 34.8 9.8 16 279-295 101-116 (302)
200 4ery_A WD repeat-containing pr 37.2 4.7E+02 0.016 29.0 24.6 229 219-498 66-310 (312)
201 1wrb_A DJVLGB; RNA helicase, D 35.0 84 0.0029 34.9 8.4 69 1083-1158 101-179 (253)
202 1q7f_A NHL, brain tumor CG1071 34.1 5E+02 0.017 28.4 23.3 15 484-498 211-225 (286)
203 4ery_A WD repeat-containing pr 33.9 5.2E+02 0.018 28.6 27.6 270 220-553 25-309 (312)
204 3ii7_A Kelch-like protein 7; p 33.8 1.1E+02 0.0037 34.7 9.3 18 180-197 48-65 (306)
205 3vl1_A 26S proteasome regulato 33.7 6E+02 0.021 29.2 35.5 71 425-500 291-365 (420)
206 3i2n_A WD repeat-containing pr 33.3 5.4E+02 0.018 28.6 24.2 194 322-553 66-288 (357)
207 1pgu_A Actin interacting prote 32.3 7.6E+02 0.026 29.9 29.9 150 322-500 161-328 (615)
208 3dmn_A Putative DNA helicase; 32.2 2.3E+02 0.0077 30.1 10.9 109 1029-1154 4-118 (174)
209 1xip_A Nucleoporin NUP159; bet 31.8 2.4E+02 0.0082 34.2 12.2 142 371-541 87-230 (388)
210 3flh_A Uncharacterized protein 31.3 42 0.0014 33.7 4.7 84 1032-1117 18-108 (124)
211 2vpj_A Kelch-like protein 12; 31.1 2.7E+02 0.0093 31.1 12.0 17 180-196 105-121 (301)
212 4gga_A P55CDC, cell division c 30.5 7.1E+02 0.024 29.1 27.9 184 279-499 116-309 (420)
213 1qde_A EIF4A, translation init 29.9 46 0.0016 36.2 5.0 68 1083-1158 83-160 (224)
214 3gk5_A Uncharacterized rhodane 29.4 45 0.0015 32.7 4.3 35 1083-1117 56-90 (108)
215 1vyh_C Platelet-activating fac 28.9 7.6E+02 0.026 28.9 31.3 97 435-552 309-407 (410)
216 3uc1_A DNA gyrase subunit A; D 28.7 7.7E+02 0.026 28.9 27.7 214 224-450 49-276 (327)
217 2i4i_A ATP-dependent RNA helic 28.7 1.2E+02 0.0041 35.9 8.8 54 1083-1143 102-159 (417)
218 3hix_A ALR3790 protein; rhodan 28.3 71 0.0024 31.0 5.6 51 1067-1117 36-88 (106)
219 3jrp_A Fusion protein of prote 28.1 6.7E+02 0.023 28.0 26.9 200 321-554 55-285 (379)
220 1gku_B Reverse gyrase, TOP-RG; 27.6 82 0.0028 43.2 7.9 72 1082-1158 99-180 (1054)
221 4aow_A Guanine nucleotide-bind 27.4 6.6E+02 0.022 27.7 29.3 114 426-552 217-333 (340)
222 1erj_A Transcriptional repress 27.0 7.9E+02 0.027 28.5 22.7 245 281-552 69-337 (393)
223 2vpj_A Kelch-like protein 12; 26.4 2.7E+02 0.0091 31.2 10.8 17 181-197 56-72 (301)
224 3ilm_A ALR3790 protein; rhodan 26.3 76 0.0026 32.7 5.6 84 1033-1117 4-92 (141)
225 3dkp_A Probable ATP-dependent 26.2 40 0.0014 37.3 3.7 70 1083-1158 99-180 (245)
226 2ymu_A WD-40 repeat protein; u 25.5 9.6E+02 0.033 28.9 34.3 262 219-552 304-576 (577)
227 1fuu_A Yeast initiation factor 24.5 1.4E+02 0.0049 34.8 8.4 68 1083-1158 90-167 (394)
228 3f3f_A Nucleoporin SEH1; struc 24.1 7.2E+02 0.025 27.0 25.7 119 220-349 13-142 (351)
229 4asc_A Kelch repeat and BTB do 23.7 94 0.0032 35.5 6.4 16 180-195 91-106 (315)
230 3iwh_A Rhodanese-like domain p 23.6 44 0.0015 32.8 3.0 36 1082-1117 56-91 (103)
231 1wp9_A ATP-dependent RNA helic 23.4 1.2E+02 0.0042 36.1 7.6 69 1082-1158 52-130 (494)
232 1l0q_A Surface layer protein; 23.1 8.6E+02 0.029 27.6 20.1 260 187-496 1-271 (391)
233 3foj_A Uncharacterized protein 23.1 50 0.0017 31.7 3.3 36 1082-1117 56-91 (100)
234 1s2m_A Putative ATP-dependent 22.8 1.4E+02 0.0047 35.2 7.8 69 1083-1158 90-168 (400)
235 4e54_B DNA damage-binding prot 22.8 9.7E+02 0.033 28.1 20.9 297 211-552 112-426 (435)
236 1wv9_A Rhodanese homolog TT165 22.7 52 0.0018 31.2 3.3 35 1083-1117 54-88 (94)
237 1q0u_A Bstdead; DEAD protein, 22.7 48 0.0017 36.1 3.5 69 1083-1158 73-155 (219)
238 2z2n_A Virginiamycin B lyase; 22.6 7.5E+02 0.025 26.7 21.3 17 382-399 143-159 (299)
239 3c75_H MADH, methylamine dehyd 22.2 9E+02 0.031 29.5 15.0 77 321-398 109-195 (426)
240 3vgz_A Uncharacterized protein 22.2 8.3E+02 0.028 27.0 27.2 25 474-498 266-291 (353)
241 1xip_A Nucleoporin NUP159; bet 22.1 6E+02 0.02 30.7 13.2 99 324-450 90-188 (388)
242 2db3_A ATP-dependent RNA helic 21.7 1.2E+02 0.0042 36.8 7.1 69 1083-1158 130-208 (434)
243 2j0s_A ATP-dependent RNA helic 21.4 1.7E+02 0.0058 34.6 8.3 69 1083-1158 106-184 (410)
244 3eiq_A Eukaryotic initiation f 21.2 1.5E+02 0.0053 34.9 7.8 71 1082-1158 108-188 (414)
245 2uvk_A YJHT; unknown function, 21.0 5.4E+02 0.019 29.5 12.3 149 331-497 11-207 (357)
246 3eme_A Rhodanese-like domain p 20.9 50 0.0017 31.8 2.8 35 1083-1117 57-91 (103)
247 1suu_A DNA gyrase subunit A; t 20.7 1E+03 0.035 27.5 27.1 214 224-450 54-280 (312)
248 2z0m_A 337AA long hypothetical 20.4 1.5E+02 0.0052 33.7 7.3 54 1082-1143 56-113 (337)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-58 Score=561.76 Aligned_cols=355 Identities=35% Similarity=0.610 Sum_probs=316.4
Q ss_pred ceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCC--CCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCC
Q psy15269 183 ISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLP--SNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQP 257 (1858)
Q Consensus 183 ~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~--~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~ 257 (1858)
....+|+||+||+|.+||||.+.......|+.+..+ .+|++|+||..|+++|++||+||+||.| |||.++.....
T Consensus 15 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~ 94 (389)
T 3kci_A 15 YFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVS 94 (389)
T ss_dssp ------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEE
T ss_pred eECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCcc
Confidence 455889999999999999998887777778776543 3699999999999999999999999987 88888777777
Q ss_pred CceeecCcc-CcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEE
Q psy15269 258 LPKRVPLEA-AIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAA 336 (1858)
Q Consensus 258 ~P~~V~~~~-~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~a 336 (1858)
.|..+.... ...++++|+||.+|++||+++|+||+||.|.+||||+++......|+.+.. +.+.+|++|+||.+|+++
T Consensus 95 ~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~va~G~~hs~a 173 (389)
T 3kci_A 95 TPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSAC 173 (389)
T ss_dssp EEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEE
T ss_pred CCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeEEEEEeCcCeEEE
Confidence 888877543 234556788999999999999999999999999999999888889999985 677899999999999999
Q ss_pred EEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC--ceEEeecC--ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCc
Q psy15269 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--VGAVSCGE--SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK 412 (1858)
Q Consensus 337 LT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~--I~~IAcG~--~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~ 412 (1858)
|+++|+||+||.|.+||||.++......|..+..+.+ |++|+||. .|+++++++| .||+||.|.+||||.+....
T Consensus 174 lt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G-~v~~wG~n~~GqLG~g~~~~ 252 (389)
T 3kci_A 174 VTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDG 252 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTT-EEEEEECCGGGTTSSSSCCC
T ss_pred EeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCC-EEEEEeCCCCCCCCCCCCCC
Confidence 9999999999999999999999888889999887754 89999995 8999999999 59999999999999999988
Q ss_pred eeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEE
Q psy15269 413 VTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLA 486 (1858)
Q Consensus 413 ~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlA 486 (1858)
...|..++.+.+.+|++|+||.+|+++|+++|+||+|| +|.+... ....|+.+..+.+.+|++|+||.+|++|
T Consensus 253 ~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~P~~v~~l~~~~v~~ia~G~~h~~a 331 (389)
T 3kci_A 253 CKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD-HVRRPRQVQGLQGKKVIAIATGSLHCVC 331 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred ccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCc-cccCCeEeccCCCCCEEEEEeccCeEEE
Confidence 99999999988889999999999999999999999999 6666543 4668999999988899999999999999
Q ss_pred EEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 487 LSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 487 Lt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
++++|+||+||.|++||||.|...+ ...|+.|..+.+.+|.+|+||.+||++++
T Consensus 332 l~~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 332 CTEDGEVYTWGDNDEGQLGDGTTNA-IQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred ECCCCCEEEeeCCCCCcCCCCCCCC-ccCcEEecccCCCCEEEEEecCCcEEEEe
Confidence 9999999999999999999998655 56899999999999999999999999997
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.9e-56 Score=544.76 Aligned_cols=352 Identities=25% Similarity=0.400 Sum_probs=304.4
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCC-cccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC-
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGK-CSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT- 254 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~-~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~- 254 (1858)
|+.+...+|+||+||.|.+||||.+.... ...|+.+..+.+|++|+||..|+++|++||+||+||.| |||.+...
T Consensus 19 h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~ 98 (413)
T 1a12_A 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE 98 (413)
T ss_dssp CTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST
T ss_pred cceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCC
Confidence 45556688999999999999999997654 66888888888999999999999999999999999987 77766542
Q ss_pred -CCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeC--CCCCCcCCCCCccc-ccceeeecCCCCCcEEEEEec
Q psy15269 255 -IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGV--GEHGKLGHGNTLSQ-RRPKLIMGGLYGKRVTQVSAG 330 (1858)
Q Consensus 255 -~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~--N~~GQLG~g~~~~~-~~P~~V~~~l~~~~IvqVa~G 330 (1858)
....|.++.+.. +|++|+||.+|+++|+++|+||+||. |.+||||.+..... ..|.+|. .+.+|++|+||
T Consensus 99 ~~~~~P~~v~l~~---~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~---~~~~i~~ia~G 172 (413)
T 1a12_A 99 GSEMVPGKVELQE---KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ---LDVPVVKVASG 172 (413)
T ss_dssp TGGGSCEECCCCS---CEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC---CSSCEEEEEEC
T ss_pred ccccCCeEecCCC---cEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEec---CCCCEEEEEec
Confidence 345688776543 67778899999999999999999999 99999999876543 4587773 45789999999
Q ss_pred CceEEEEEeCCeEEEEecCCCCCCCCCCCC-----------cccccccccc-------CCCceEEeecCceEEEEEcCCC
Q psy15269 331 HSHSAAVTEDGLLYTWGEGDHGRLGHGDLK-----------SRHTPTLVTE-------LSDVGAVSCGESHTLVLSQDGH 392 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~-----------~~~~P~~V~~-------l~~I~~IAcG~~HTlaLt~dG~ 392 (1858)
.+|+++|+++|+||+||.|.+||||.+... ....|..+.. ..+|++|+||.+|+++|+++|+
T Consensus 173 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~ 252 (413)
T 1a12_A 173 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252 (413)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCC
Confidence 999999999999999999999999987532 1245654443 2459999999999999999996
Q ss_pred EEEEEeCCCCCCCCCCCCCceeccEEeeeccc--ccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccE
Q psy15269 393 TVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK--FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPV 464 (1858)
Q Consensus 393 tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~--~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~ 464 (1858)
||+||.|.+||||.++......|..+..+.+ .+|++|+||.+|+++|+++|+||+|| +|.+........|+
T Consensus 253 -v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~ 331 (413)
T 1a12_A 253 -VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT 331 (413)
T ss_dssp -EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEE
T ss_pred -EEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCE
Confidence 9999999999999999988899999988776 67999999999999999999999999 66664445577899
Q ss_pred EecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEecCcceEEEe
Q psy15269 465 LVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 465 ~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G~~hS~alt 541 (1858)
.|+.+. +|++|+||.+|++|++++|+||+||.|.+||||.+...+ ...|.+|.. +.+.+|.+|+||.+|+++++
T Consensus 332 ~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~-~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~ 407 (413)
T 1a12_A 332 LISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 407 (413)
T ss_dssp ECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSC-EEEEEECCSTTTTTEEEEEEEECSSEEEEEE
T ss_pred EecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCC-cccCeEccccccCCCeEEEEeeCCCcEEEEE
Confidence 998876 899999999999999999999999999999999998744 567888874 56788999999999999998
No 3
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-55 Score=541.14 Aligned_cols=346 Identities=27% Similarity=0.446 Sum_probs=308.5
Q ss_pred ccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCC
Q psy15269 212 PRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEG 288 (1858)
Q Consensus 212 P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG 288 (1858)
|.....+.+|++|+||..|+++|+++|+||+||.| |||.+.......|.++.... ..+|++|+||..|+++|+++|
T Consensus 9 ~~v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~-~~~i~~va~G~~ht~al~~~g 87 (406)
T 4d9s_A 9 DEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALD-GHQIVSVTCGADHTVAYSQSG 87 (406)
T ss_dssp ------CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGT-TSCEEEEEECSSEEEEEETTT
T ss_pred ccCCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccC-CCCEEEEEeCcceEEEEECCC
Confidence 33344456899999999999999999999999987 88888887777888776443 236778889999999999986
Q ss_pred -cEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccc
Q psy15269 289 -EVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTL 367 (1858)
Q Consensus 289 -~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~ 367 (1858)
+||+||.|.+||||+++......|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||.++......|..
T Consensus 88 g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp TEEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred CEEEEEcCCCCcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 99999999999999999888888988875 6778999999999999999999999999999999999999888889999
Q ss_pred cccCC--CceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCc
Q psy15269 368 VTELS--DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGL 445 (1858)
Q Consensus 368 V~~l~--~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~ 445 (1858)
+..+. +|++|+||.+|+++|+++|+ ||+||.|.+||||.++......|..+..+.+.+|++|+||.+|+++|+++|+
T Consensus 167 v~~~~~~~i~~va~G~~hs~alt~~G~-v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 167 IQAFEGIRIKMVAAGAEHTAAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTSC-EEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC
T ss_pred ecccCCCcEEEEecCCCeEEEEeCCCC-EEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCC
Confidence 98776 58999999999999999996 9999999999999999999999999998888899999999999999999999
Q ss_pred EEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeee
Q psy15269 446 VFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKV 519 (1858)
Q Consensus 446 Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V 519 (1858)
||+|| +|.+... ....|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+...+ ...|.++
T Consensus 246 v~~wG~n~~GqlG~g~~~-~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLE-DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD-QCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSC-EEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCc-CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCC-CccCEEE
Confidence 99999 5555443 45689999999888999999999999999999999999999999999997655 4578888
Q ss_pred ecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 520 VGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 520 ~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
..+.+.+|++|+||.+|+++++ ++|++|+||+|..+|||....
T Consensus 324 ~~~~~~~v~~va~G~~hs~alt---~~G~v~~wG~n~~GqLG~g~~ 366 (406)
T 4d9s_A 324 RFPDDQKVVQVSCGWRHTLAVT---ERNNVFAWGRGTNGQLGIGES 366 (406)
T ss_dssp CCGGGCCEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTCSSSC
T ss_pred eccCCCcEEEEEeCCCeEEEEe---CCCCEEEecCCCCCccCCCCC
Confidence 7777778999999999999999 899999999999999997653
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-54 Score=533.90 Aligned_cols=351 Identities=23% Similarity=0.312 Sum_probs=300.6
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCC-CCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVR-GKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTI 255 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~-~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~ 255 (1858)
++...+.+|+||+||+|.+||||.+.. .....|..+..+.+|++|+||..|+++|++||+||+||.| |||.+....
T Consensus 35 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~ 114 (423)
T 3mvd_K 35 LPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSED 114 (423)
T ss_dssp CCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCST
T ss_pred cceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCC
Confidence 445666899999999999999999864 4466888888888999999999999999999999999987 777776543
Q ss_pred --CCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeC--CCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC
Q psy15269 256 --QPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGV--GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH 331 (1858)
Q Consensus 256 --~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~--N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~ 331 (1858)
...|.++.+.. +|++|+||.+|+++|+++|+||+||. |.+||||.+.......|..+ +.+.+|++|+||.
T Consensus 115 ~~~~~P~~v~~~~---~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~---~~~~~i~~va~G~ 188 (423)
T 3mvd_K 115 GSESKPDLIDLPG---KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL---MEGTVCCSIASGA 188 (423)
T ss_dssp TSSSSCEECCCSS---CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES---STTCCEEEEEECS
T ss_pred ccccCCeEEcCCC---CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe---cCCCcEEEEecCC
Confidence 56787777544 46678899999999999999999999 99999999988777666655 4567899999999
Q ss_pred ceEEEEEeCCeEEEEecCCCCCCCCCCCC-----------ccccccccccC--CCceEEeecCceEEEE-EcCCCEEEEE
Q psy15269 332 SHSAAVTEDGLLYTWGEGDHGRLGHGDLK-----------SRHTPTLVTEL--SDVGAVSCGESHTLVL-SQDGHTVWSM 397 (1858)
Q Consensus 332 ~HS~aLT~dG~VYtWG~N~~GQLG~G~~~-----------~~~~P~~V~~l--~~I~~IAcG~~HTlaL-t~dG~tVysW 397 (1858)
+|+++|+++|+||+||.|.+||||.+... ....|..+... ..|++|+||.+|++++ +.+|+ ||+|
T Consensus 189 ~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~-v~~w 267 (423)
T 3mvd_K 189 DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQV-IWAT 267 (423)
T ss_dssp SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCC-EEEE
T ss_pred CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCe-EEEE
Confidence 99999999999999999999999997642 34467666543 3589999999999999 58996 9999
Q ss_pred eCCCCCCCCCCCCC--ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEecCC
Q psy15269 398 GSGNLGKLGHEDTG--KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGL 469 (1858)
Q Consensus 398 G~N~~GQLG~g~~~--~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l 469 (1858)
|.|.+||||.+... ....|..+. ..+|++|+||.+|+++|+++|+||+|| +|.+........|..+..+
T Consensus 268 G~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l 344 (423)
T 3mvd_K 268 GLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL 344 (423)
T ss_dssp EECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTC
T ss_pred eCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccC
Confidence 99999999996543 344565554 346999999999999999999999999 6777666556789999888
Q ss_pred CCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEEEEEecCcceEEEee
Q psy15269 470 SSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYTV 542 (1858)
Q Consensus 470 ~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~~Ia~G~~hS~alt~ 542 (1858)
.+ +|++|+||.+|++|++++|+||+||.|.+||||.|+..+ ...|++|.. +.+.+|.+|+||.+|+++++.
T Consensus 345 ~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~ 417 (423)
T 3mvd_K 345 TE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-ELEPIVVVSKNTQGKHMLLASGGGQHAIFLVK 417 (423)
T ss_dssp CS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCC-EEEEEECCSTTTTTCCEEEEEECSSEEEEEEE
T ss_pred CC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCC-cccCeEEeCcccCCCEEEEEEECCCcEEEEEc
Confidence 76 899999999999999999999999999999999998755 457998875 677889999999999999984
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-54 Score=542.21 Aligned_cols=356 Identities=23% Similarity=0.426 Sum_probs=297.4
Q ss_pred cceeeCCeEEEEcCCCCCCCCcCCCC---CcccccccCCC----CCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCC
Q psy15269 182 DISVAHSKVYTWGCNLHHQILDEVRG---KCSRPRLQSLP----SNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLA 251 (1858)
Q Consensus 182 ~~a~s~g~Vy~WGsN~~GQLG~g~~~---~~~~P~~v~~~----~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg 251 (1858)
...+.+++||+||+|.+||||.|... ....|+.++.+ .+|++|+||..|+++|+++|+||+||.| |||.+
T Consensus 23 ~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~ 102 (473)
T 3of7_A 23 YLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRD 102 (473)
T ss_dssp HCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSC
T ss_pred ccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCC
Confidence 34457899999999999999999743 35567666544 4799999999999999999999999987 77776
Q ss_pred CCCC-----------------------CCCceeecC--cc---CcceEEEEEecCcEEEEEeeCCcEEEEeC--CCCCCc
Q psy15269 252 NTTI-----------------------QPLPKRVPL--EA---AIVSLSVSKCSEAHVLTVTSEGEVYSWGV--GEHGKL 301 (1858)
Q Consensus 252 ~~~~-----------------------~~~P~~V~~--~~---~i~~Is~Ia~G~~HtlaLT~dG~VysWG~--N~~GQL 301 (1858)
.... ...|.+++. .. ...+|++|+||..|++||+++|+||+||. |.+|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqL 182 (473)
T 3of7_A 103 TSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGIL 182 (473)
T ss_dssp CC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEE
T ss_pred CcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCcc
Confidence 5543 345766653 11 23678889999999999999999999998 689999
Q ss_pred CCCCC--cccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCc----cccccccccCCCce
Q psy15269 302 GHGNT--LSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS----RHTPTLVTELSDVG 375 (1858)
Q Consensus 302 G~g~~--~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~----~~~P~~V~~l~~I~ 375 (1858)
|.+.. .....|..|.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|..+. +.+|+
T Consensus 183 G~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~-~~~v~ 260 (473)
T 3of7_A 183 GFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG-LRHVK 260 (473)
T ss_dssp ESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECS-CCSEE
T ss_pred CCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecC-CcceE
Confidence 98544 35667888875 6777899999999999999999999999999999999986543 34566553 36799
Q ss_pred EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC----ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe-
Q psy15269 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG----KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG- 450 (1858)
Q Consensus 376 ~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~----~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG- 450 (1858)
+|+||.+|+++|+.+|+ ||+||.|.+||||.+... ....|+.+..+.+.+|++|+||.+|+++|+++|+||+||
T Consensus 261 ~Ia~G~~hs~alt~~G~-v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 261 YIASGENHCFALTKDNK-LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEECSSEEEEEETTSC-EEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred EEecCCCeEEEEecCCC-EEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEEC
Confidence 99999999999999996 999999999999998754 457899998888889999999999999999999999999
Q ss_pred -----CCCCCC-------------CccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 451 -----LGLRSS-------------SISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 451 -----LG~gss-------------~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
+|.+.. ......|..++.+. +|++|+||.+|++|++++|+||+||.|.+||||.|.....
T Consensus 340 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~ 417 (473)
T 3of7_A 340 LDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDD 417 (473)
T ss_dssp CTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSC
T ss_pred CCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCcc
Confidence 554321 11234677776554 7999999999999999999999999999999999985556
Q ss_pred cccCeeee--cCCCceEEEEEecCcceEEEee
Q psy15269 513 VDQPSKVV--GLEDVCVRQICAGSLFSIAYTV 542 (1858)
Q Consensus 513 vs~P~~V~--~L~~~~I~~Ia~G~~hS~alt~ 542 (1858)
...|++|. .+.+.+|.+|+||.+||+++..
T Consensus 418 ~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~ 449 (473)
T 3of7_A 418 TEVPTRIKNTATQDHNIILVGCGGQFSVSGGV 449 (473)
T ss_dssp EEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred ccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence 77899997 4567789999999999999973
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.9e-54 Score=531.02 Aligned_cols=338 Identities=32% Similarity=0.510 Sum_probs=300.4
Q ss_pred cccceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCC--CeEEEEEcCCEEEEEecCC-cEEEEccc---ccCCCCC
Q psy15269 180 DTDISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPS--NIRHIEAGQFCTFLLDSTG-GLLVYGKG---WLGLANT 253 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~--~IkqVA~G~~hTlaLt~dG-~VyawG~N---qLGlg~~ 253 (1858)
++.+...+|+||+||+|.+||||.+.......|+.+..+. +|++|+||..|+++|+++| +||+||.| |+|.+..
T Consensus 27 hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~ 106 (406)
T 4d9s_A 27 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS 106 (406)
T ss_dssp EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSC
T ss_pred eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCC
Confidence 3445558999999999999999999988888888776544 7999999999999999886 99999987 7887777
Q ss_pred CCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCce
Q psy15269 254 TIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSH 333 (1858)
Q Consensus 254 ~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~H 333 (1858)
.....|.++.... -.+|++|+||..|++||+++|+||+||.|.+||||.++......|+++.. +.+.+|++|+||.+|
T Consensus 107 ~~~~~p~~v~~l~-~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~h 184 (406)
T 4d9s_A 107 SDLFTPLPIKALH-GIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEH 184 (406)
T ss_dssp CCEEEEEECGGGT-TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSE
T ss_pred CccccceEecccC-CCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cCCCcEEEEecCCCe
Confidence 6666777666443 23577888999999999999999999999999999999988889999985 677899999999999
Q ss_pred EEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCC--CceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC
Q psy15269 334 SAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG 411 (1858)
Q Consensus 334 S~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~--~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~ 411 (1858)
+++|+++|+||+||.|.+||||.++......|..+..+. +|++|+||.+|+++|+.+|+ ||+||.|.+||||.++..
T Consensus 185 s~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~-v~~wG~n~~GqlG~g~~~ 263 (406)
T 4d9s_A 185 TAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA-LYTYGWSKYGQLGHGDLE 263 (406)
T ss_dssp EEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCC-EEEEECCTTSTTCSSSCC
T ss_pred EEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCC-EEEeeCCCCCCCCCCCCc
Confidence 999999999999999999999999988888899887764 59999999999999999996 999999999999999999
Q ss_pred ceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCCccccccEEecCCCCCCEEEEEEcCceEE
Q psy15269 412 KVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVL 485 (1858)
Q Consensus 412 ~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~Htl 485 (1858)
....|+.+..+.+.+|++|+||.+|+++|+++|+||+|| +|.+... ....|..+..+...+|++|+||.+|++
T Consensus 264 ~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~~~~~~v~~va~G~~hs~ 342 (406)
T 4d9s_A 264 DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL-DQCSPVQVRFPDDQKVVQVSCGWRHTL 342 (406)
T ss_dssp CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSS-CEEEEEEECCGGGCCEEEEEECSSEEE
T ss_pred CccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCC-CCccCEEEeccCCCcEEEEEeCCCeEE
Confidence 999999999988889999999999999999999999999 5555443 456788888777789999999999999
Q ss_pred EEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecC
Q psy15269 486 ALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL 522 (1858)
Q Consensus 486 ALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L 522 (1858)
|++++|+||+||.|.+||||.|+..+ ...|..|+.+
T Consensus 343 alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l 378 (406)
T 4d9s_A 343 AVTERNNVFAWGRGTNGQLGIGESVD-RNFPKIIEAL 378 (406)
T ss_dssp EEETTSCEEEEECCTTSTTCSSSCCC-EEEEEECGGG
T ss_pred EEeCCCCEEEecCCCCCccCCCCCCC-CcCCEEeeee
Confidence 99999999999999999999998765 4578888765
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-52 Score=508.89 Aligned_cols=335 Identities=27% Similarity=0.487 Sum_probs=285.3
Q ss_pred EEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCC
Q psy15269 223 HIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299 (1858)
Q Consensus 223 qVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~G 299 (1858)
++..-..+.+++++||+||+||.| |||.++......|.++..... .+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~G 83 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALAT-LRPVQLIGGEQTLFAVTADGKLYATGYGAGG 83 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHH-TCEEEEEEETTEEEEEETTSCEEEEECCGGG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccC-CceEEEEeCCCeEEEEcCCCcEEEEECCCCC
Confidence 445566788999999999999987 777766666666776654332 3466788999999999999999999999999
Q ss_pred CcCCCCCcccccceeeecCCCCC--cEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCC--Cce
Q psy15269 300 KLGHGNTLSQRRPKLIMGGLYGK--RVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVG 375 (1858)
Q Consensus 300 QLG~g~~~~~~~P~~V~~~l~~~--~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~--~I~ 375 (1858)
|||.++......|..+.. +.+. ++++|+||.+|+++|+++|+||+||.|.+||||.++......|..|..+. +|+
T Consensus 84 qLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 84 RLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp TTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCcCCccCCEEccc-ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEE
Confidence 999999888888998875 4444 45789999999999999999999999999999999988888999998776 489
Q ss_pred EEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC--ceEEEEecCCcEEEEe---
Q psy15269 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT--SFSVALTWDGLVFWWG--- 450 (1858)
Q Consensus 376 ~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~--~hSlALT~dG~Vy~WG--- 450 (1858)
+|+||..|+++|+++|+ ||+||.|.+||||.++......|+.+..+.+.+|++|+||. .|+++++++|+||+||
T Consensus 163 ~va~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 163 DVAAGGAHSACVTAAGD-LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEEECSSEEEEEETTSC-EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEEeCcCeEEEEeCCCe-EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 99999999999999996 99999999999999999999999999999999999999995 8999999999999999
Q ss_pred ---CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceE
Q psy15269 451 ---LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCV 527 (1858)
Q Consensus 451 ---LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I 527 (1858)
+|.+... ....|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... ...|.++..+.+.+|
T Consensus 242 ~GqLG~g~~~-~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~v 319 (389)
T 3kci_A 242 YGKLGRGGSD-GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH-VRRPRQVQGLQGKKV 319 (389)
T ss_dssp GGTTSSSSCC-CEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCC-EEEEEECGGGTTCCE
T ss_pred CCCCCCCCCC-CccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcc-ccCCeEeccCCCCCE
Confidence 6666543 45679999998888999999999999999999999999999999999997654 568999999988999
Q ss_pred EEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 528 RQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 528 ~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
++|+||.+|+++++ ++|+||+||.|..+|||..+.
T Consensus 320 ~~ia~G~~h~~al~---~~G~v~~wG~n~~GqLG~g~~ 354 (389)
T 3kci_A 320 IAIATGSLHCVCCT---EDGEVYTWGDNDEGQLGDGTT 354 (389)
T ss_dssp EEEEECSSEEEEEE---TTCCEEEEECCTTSTTCSSSC
T ss_pred EEEEeccCeEEEEC---CCCCEEEeeCCCCCcCCCCCC
Confidence 99999999999998 899999999999999997654
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=7.7e-52 Score=509.26 Aligned_cols=334 Identities=22% Similarity=0.308 Sum_probs=284.9
Q ss_pred CCCeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCC-CCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEE
Q psy15269 218 PSNIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANT-TIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSW 293 (1858)
Q Consensus 218 ~~~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~-~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysW 293 (1858)
..++++|+||..|+++++++|+||+||.| |||.+.. .....|.++.... .|++|+||..|+++|+++|+||+|
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~---~v~~va~G~~h~~~l~~~G~v~~w 99 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP---DAVDISAGGMHNLVLTKSGDIYSF 99 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS---SEEEEEECSSEEEEEETTSCEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC---CceEEeeCCCeEEEEeCCCeEEEe
Confidence 34788999999999999999999999987 7887754 3344566665433 467788999999999999999999
Q ss_pred eCCCCCCcCCCCCcc--cccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec--CCCCCCCCCCCCccccccccc
Q psy15269 294 GVGEHGKLGHGNTLS--QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE--GDHGRLGHGDLKSRHTPTLVT 369 (1858)
Q Consensus 294 G~N~~GQLG~g~~~~--~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~--N~~GQLG~G~~~~~~~P~~V~ 369 (1858)
|.|.+||||++.... ...|..|.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+.......|..+.
T Consensus 100 G~n~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~ 176 (423)
T 3mvd_K 100 GCNDEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM 176 (423)
T ss_dssp ECCSSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS
T ss_pred ECCCCcCCCCCCcCCccccCCeEEcC---CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec
Confidence 999999999998764 567887762 3579999999999999999999999999 999999999888788888877
Q ss_pred cCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC-----------ceeccEEeeecccccEEEEEecCceEE
Q psy15269 370 ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG-----------KVTTPKVIEALRKFRVRKVCAGTSFSV 438 (1858)
Q Consensus 370 ~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~-----------~~~~P~~V~~l~~~~Iv~IaaG~~hSl 438 (1858)
...+|++|+||.+|+++|+++|+ ||+||.|.+||||.+... ....|..+.......|++|+||.+|++
T Consensus 177 ~~~~i~~va~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~ 255 (423)
T 3mvd_K 177 EGTVCCSIASGADHLVILTTAGK-VFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTF 255 (423)
T ss_dssp TTCCEEEEEECSSEEEEEETTSC-EEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEE
T ss_pred CCCcEEEEecCCCeEEEEecCCe-EEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEE
Confidence 66779999999999999999996 999999999999997642 456899888777888999999999999
Q ss_pred EE-ecCCcEEEEe------CCCCC-CCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCC
Q psy15269 439 AL-TWDGLVFWWG------LGLRS-SSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFS 510 (1858)
Q Consensus 439 AL-T~dG~Vy~WG------LG~gs-s~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~ 510 (1858)
++ +++|+||+|| +|.+. .......|..+. ..+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~ 332 (423)
T 3mvd_K 256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVK 332 (423)
T ss_dssp EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCC
T ss_pred EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCcc
Confidence 99 6999999999 45422 233445676665 3589999999999999999999999999999999999877
Q ss_pred CCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcch
Q psy15269 511 NPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHTF 565 (1858)
Q Consensus 511 ~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t~ 565 (1858)
+....|..+..+.+ +|++|+||.+|+++++ ++|++|+||.|..+|||.+..
T Consensus 333 ~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt---~~G~v~~wG~n~~GqLG~g~~ 383 (423)
T 3mvd_K 333 DVVEKPTIVKKLTE-KIVSVGCGEVCSYAVT---IDGKLYSWGSGVNNQLGVGDG 383 (423)
T ss_dssp SCEEEEEECTTCCS-CEEEEEEETTEEEEEE---TTSCEEEEECCTTSCSSSSSS
T ss_pred ccccCceEeccCCC-CEEEEEcCCCeEEEEc---CCCCEEEECCCCCCCCCCCCC
Confidence 76678888888877 8999999999999998 899999999999999997643
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.3e-51 Score=504.07 Aligned_cols=329 Identities=24% Similarity=0.421 Sum_probs=282.1
Q ss_pred EEEEcCCEEEEEecCCcEEEEccc---ccCCCCCCC-CCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCC
Q psy15269 223 HIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTTI-QPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEH 298 (1858)
Q Consensus 223 qVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~~-~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~ 298 (1858)
+.+.+..|+++++++|+||+||.| |||.+.... ...|..+... .+|++|+||..|+++|+++|+||+||.|.+
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~---~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP---EDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS---SCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC---CCeEEEEeCCCeEEEEcCCCCEEEEECCCC
Confidence 556668999999999999999987 888776543 4567777654 567778899999999999999999999999
Q ss_pred CCcCCCCCc--ccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec--CCCCCCCCCCCCcc-ccccccccCCC
Q psy15269 299 GKLGHGNTL--SQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE--GDHGRLGHGDLKSR-HTPTLVTELSD 373 (1858)
Q Consensus 299 GQLG~g~~~--~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~--N~~GQLG~G~~~~~-~~P~~V~~l~~ 373 (1858)
||||.++.. ....|..|. + ..+|++|+||.+|+++|+++|+||+||. |.+||||.++.... ..|..|....+
T Consensus 89 GqLG~~~~~~~~~~~P~~v~--l-~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~ 165 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVE--L-QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVP 165 (413)
T ss_dssp STTCSCCCSTTGGGSCEECC--C-CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSC
T ss_pred CCCCCCCCCCccccCCeEec--C-CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCC
Confidence 999998763 456788884 3 3489999999999999999999999999 99999999875543 45888866677
Q ss_pred ceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCC-----------ceeccEEeeec-----ccccEEEEEecCceE
Q psy15269 374 VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTG-----------KVTTPKVIEAL-----RKFRVRKVCAGTSFS 437 (1858)
Q Consensus 374 I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~-----------~~~~P~~V~~l-----~~~~Iv~IaaG~~hS 437 (1858)
|++|+||.+|+++|+++|+ ||+||.|.+||||.+... ....|+.+... ...+|++|+||.+|+
T Consensus 166 i~~ia~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs 244 (413)
T 1a12_A 166 VVKVASGNDHLVMLTADGD-LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 244 (413)
T ss_dssp EEEEEECSSEEEEEETTSC-EEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred EEEEEecCceEEEEcCCCC-EEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEE
Confidence 9999999999999999996 999999999999987532 23567666543 456899999999999
Q ss_pred EEEecCCcEEEEe------CCCCCCCccccccEEecCCCC--CCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCC
Q psy15269 438 VALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSS--HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNF 509 (1858)
Q Consensus 438 lALT~dG~Vy~WG------LG~gss~~~~~~P~~V~~l~~--~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~ 509 (1858)
++|+++|+||+|| +|.+... ....|..+..+.+ .+|++|+||.+|+++++++|+||+||.|.+||||.+..
T Consensus 245 ~alt~~G~v~~wG~n~~gqLG~~~~~-~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~ 323 (413)
T 1a12_A 245 FAISHEGHVYGFGLSNYHQLGTPGTE-SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG 323 (413)
T ss_dssp EEEETTCCEEEEECCTTSTTSCSSCS-CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT
T ss_pred EEEeCCCCEEEEeCCCCcCCCCCCCC-cccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCC
Confidence 9999999999999 5555443 4578999988876 67999999999999999999999999999999999966
Q ss_pred CCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcccccCCcc
Q psy15269 510 SNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLCVDVRPHT 564 (1858)
Q Consensus 510 ~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~gqLg~~t 564 (1858)
......|.+|..+. +|++|+||.+|+++++ ++|++|+||.|..+|||...
T Consensus 324 ~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt---~~G~v~~wG~n~~gqLG~g~ 373 (413)
T 1a12_A 324 AEEKSIPTLISRLP--AVSSVACGASVGYAVT---KDGRVFAWGMGTNYQLGTGQ 373 (413)
T ss_dssp CCCEEEEEECCSSS--SEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTCSSS
T ss_pred CccccCCEEecccC--ceeEEEECcceEEEEe---CCCCEEEecCCCCCCCCCCC
Confidence 55567899998876 6999999999999999 79999999999999999754
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-50 Score=502.06 Aligned_cols=336 Identities=24% Similarity=0.364 Sum_probs=281.5
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEccc---ccCCCCCC---CCCCceeecCc-cCcceEEEEEecCcEEEEEeeCCcEEE
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKG---WLGLANTT---IQPLPKRVPLE-AAIVSLSVSKCSEAHVLTVTSEGEVYS 292 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~N---qLGlg~~~---~~~~P~~V~~~-~~i~~Is~Ia~G~~HtlaLT~dG~Vys 292 (1858)
.|....++..|+++++++|+||+||.| |||.++.. ....|..+++. ....+|++|+||..|++||+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred hhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEE
Confidence 466777888999999999999999987 88888743 34456666544 234578889999999999999999999
Q ss_pred EeCCCCCCcCCCCCcc-----------------------cccceeeecC-C----CCCcEEEEEecCceEEEEEeCCeEE
Q psy15269 293 WGVGEHGKLGHGNTLS-----------------------QRRPKLIMGG-L----YGKRVTQVSAGHSHSAAVTEDGLLY 344 (1858)
Q Consensus 293 WG~N~~GQLG~g~~~~-----------------------~~~P~~V~~~-l----~~~~IvqVa~G~~HS~aLT~dG~VY 344 (1858)
||.|++||||.++... ...|..|... + .+.+|++|+||.+|+++|+++|+||
T Consensus 91 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy 170 (473)
T 3of7_A 91 WGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVY 170 (473)
T ss_dssp EECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEE
T ss_pred eECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEE
Confidence 9999999999987654 4578888631 2 3678999999999999999999999
Q ss_pred EEec--CCCCCCCCCCC--CccccccccccCCC--ceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCc----ee
Q psy15269 345 TWGE--GDHGRLGHGDL--KSRHTPTLVTELSD--VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK----VT 414 (1858)
Q Consensus 345 tWG~--N~~GQLG~G~~--~~~~~P~~V~~l~~--I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~----~~ 414 (1858)
+||. |.+||||.+.. .....|..|..+.+ |++|+||.+|+++|+.+|+ ||+||.|.+||||.+.... ..
T Consensus 171 ~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~~~~ 249 (473)
T 3of7_A 171 AWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM-VFAWGNGQQNQLGRKVMERFRLKTL 249 (473)
T ss_dssp EEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC-EEEEECCTTSTTSSCCCGGGTTTTC
T ss_pred EeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe-EEEEeCCCCCCCCCCcccccccccc
Confidence 9998 68999998543 35678999988876 9999999999999999996 9999999999999987654 34
Q ss_pred ccEEeeecccccEEEEEecCceEEEEecCCcEEEEe------CCCCCCC---ccccccEEecCCCCCCEEEEEEcCceEE
Q psy15269 415 TPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSS---ISFHTPVLVTGLSSHQIVDVSIGDSHVL 485 (1858)
Q Consensus 415 ~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG------LG~gss~---~~~~~P~~V~~l~~~~Iv~Ia~G~~Htl 485 (1858)
.|..+.. .+|++|+||.+|++||+++|+||+|| +|.+... .....|+.+..+.+.+|++|+||.+|++
T Consensus 250 ~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~ 326 (473)
T 3of7_A 250 DPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSL 326 (473)
T ss_dssp SCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEE
T ss_pred CceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEE
Confidence 6666543 56999999999999999999999999 5554432 2456799999888889999999999999
Q ss_pred EEEeCCeEEEEeCCCCCCCCCCCCC-------------CCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 486 ALSQYNEVYAWGSNTMGQCGQDNFS-------------NPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 486 ALt~dG~VYaWG~N~~GQLG~G~~~-------------~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
+|+++|+||+||.|.+||||.+... .....|..+..+. +|++|+||.+|+++++ ++|++|+|
T Consensus 327 ~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~---~~G~vy~w 401 (473)
T 3of7_A 327 ILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVA---QNGIAYSW 401 (473)
T ss_dssp EEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEE---TTSCEEEE
T ss_pred EEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEe---CCCcEEEe
Confidence 9999999999999999999987531 1123566665543 6999999999999999 89999999
Q ss_pred ccCcccccCCcc
Q psy15269 553 FTPLCVDVRPHT 564 (1858)
Q Consensus 553 G~n~~gqLg~~t 564 (1858)
|.|..+|||.+.
T Consensus 402 G~n~~GqLG~g~ 413 (473)
T 3of7_A 402 GFGETYAVGLGP 413 (473)
T ss_dssp ECCTTCTTCCCS
T ss_pred eCCCCCCCCCCC
Confidence 999999999865
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.4e-43 Score=410.22 Aligned_cols=269 Identities=26% Similarity=0.386 Sum_probs=215.0
Q ss_pred CeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccC
Q psy15269 188 SKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAA 267 (1858)
Q Consensus 188 g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~ 267 (1858)
.+||+||+|...++. |.......+|++|+||..|+++|+ ||+||+||.|..|+-. .|...
T Consensus 2 ~~v~~WG~n~~~~~~---------~~p~~~~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg-----~p~~~----- 61 (282)
T 3qhy_B 2 TSVVAWGGNNDWGEA---------TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT-----MPAAT----- 61 (282)
T ss_dssp CEEEEECSCCTTSTT---------CCCGGGSSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS-----CCGGG-----
T ss_pred eEEEEeCCCCCcCcc---------cCCccccCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC-----CCccC-----
Confidence 469999999765543 122333458999999999999998 9999999998444211 12211
Q ss_pred cceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEe
Q psy15269 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG 347 (1858)
Q Consensus 268 i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG 347 (1858)
..+|++|+||.+|+++|+ ||+||+||.|.+||||. |..+. .+|++|+||.+|+++|+ +|+||+||
T Consensus 62 ~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G~v~~wG 126 (282)
T 3qhy_B 62 QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DGKVIAWG 126 (282)
T ss_dssp GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CCeEEEec
Confidence 235666779999999996 99999999999999985 44332 46999999999999999 99999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccE
Q psy15269 348 EGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRV 427 (1858)
Q Consensus 348 ~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I 427 (1858)
.|.+||||.. .....+|++|+||..|+++++ +|+ ||+||.|.+||+|. |.. ...+|
T Consensus 127 ~n~~gqlg~~----------~~~~~~i~~i~~G~~~~~~l~-~G~-v~~wG~n~~gqlg~--------p~~----~~~~v 182 (282)
T 3qhy_B 127 DDSDGQTTVP----------AEAQSGVTALDGGVYTALAVK-NGG-VIAWGDNYFGQTTV--------PAE----AQSGV 182 (282)
T ss_dssp CCTTSTTSCC----------GGGGSSEEEEEECSSEEEEEE-TTE-EEEEECCTTSTTSC--------CGG----GGSSE
T ss_pred CCCCCcCCCC----------ccCCCCeEEEEcccCEEEEEE-CCE-EEEecCCCCCCCCC--------cee----cCCCe
Confidence 9999999732 223467999999999999999 894 99999999999983 221 23569
Q ss_pred EEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCC
Q psy15269 428 RKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQD 507 (1858)
Q Consensus 428 v~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G 507 (1858)
++|+||.+|+++| ++|+||+||.+....- -.|. +. ..+|++|+||..|+++++ +|+||+||.|.+||++..
T Consensus 183 ~~i~~G~~hs~al-~~G~v~~wG~n~~gql---g~p~--~~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 183 DDVAGGIFHSLAL-KDGKVIAWGDNRYKQT---TVPT--EA--LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp EEEEECSSEEEEE-ETTEEEEEECCTTSTT---CCCG--GG--GSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS
T ss_pred EEEEecCCEEEEE-ECCeEEEEECCCCCCC---CCCc--cc--CCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC
Confidence 9999999999999 8999999993322111 0121 11 247999999999999999 999999999999998751
Q ss_pred CCCCCcccCeeeecCCCceEEEEEecCcceEEEe
Q psy15269 508 NFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541 (1858)
Q Consensus 508 ~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt 541 (1858)
..|++|+||..|+++++
T Consensus 254 -----------------~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 254 -----------------SGVSSIEAGPNAAYALK 270 (282)
T ss_dssp -----------------SCEEEEEECSSCEEEEE
T ss_pred -----------------CCcEEEEECcCeEEEEe
Confidence 14889999999999998
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3e-38 Score=370.04 Aligned_cols=249 Identities=25% Similarity=0.373 Sum_probs=199.3
Q ss_pred cEEEEccc-ccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeec
Q psy15269 239 GLLVYGKG-WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMG 317 (1858)
Q Consensus 239 ~VyawG~N-qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~ 317 (1858)
+||+||.| ..+... .|. .. ..+|++|+||..|+++|+ +|+||+||.|.+||||. |..
T Consensus 3 ~v~~WG~n~~~~~~~-----~p~--~~---~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~--- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEAT-----VPA--EA---QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAA--- 60 (282)
T ss_dssp EEEEECSCCTTSTTC-----CCG--GG---SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGG---
T ss_pred EEEEeCCCCCcCccc-----CCc--cc---cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------Ccc---
Confidence 69999987 444321 121 11 235666779999999998 99999999999999994 221
Q ss_pred CCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEE
Q psy15269 318 GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSM 397 (1858)
Q Consensus 318 ~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysW 397 (1858)
...+|++|+||.+|+++|+ +|+||+||.|.+||||. |..+. .+|++|+||.+|+++|+ +|+ ||+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~--~~v~~ia~G~~hs~al~-~G~-v~~w 125 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR--SGVDAIAAGAWASYALK-DGK-VIAW 125 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS--SSEEEEEEETTEEEEEE-TTE-EEEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC--CCeEEEECcCCEEEEEe-CCe-EEEe
Confidence 1246999999999999996 99999999999999984 54443 47999999999999999 995 9999
Q ss_pred eCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEE
Q psy15269 398 GSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDV 477 (1858)
Q Consensus 398 G~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~I 477 (1858)
|.|.+||||... ....+|++|+||.+|+++++ +|+||+||.+....- ..|..+ ..+|++|
T Consensus 126 G~n~~gqlg~~~------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gql---g~p~~~----~~~v~~i 185 (282)
T 3qhy_B 126 GDDSDGQTTVPA------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQT---TVPAEA----QSGVDDV 185 (282)
T ss_dssp ECCTTSTTSCCG------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT---SCCGGG----GSSEEEE
T ss_pred cCCCCCcCCCCc------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCC---CCceec----CCCeEEE
Confidence 999999998421 12346999999999999999 899999994322211 123222 3589999
Q ss_pred EEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeeccCcc
Q psy15269 478 SIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFTPLC 557 (1858)
Q Consensus 478 a~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~n~~ 557 (1858)
+||.+|++++ ++|+||+||.|.+||||.+. + .+ .+|++|+||.+|+++++ +|++|+||.|..
T Consensus 186 ~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~---------~--~~--~~v~~i~~G~~h~~al~----~g~v~~wG~n~~ 247 (282)
T 3qhy_B 186 AGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT---------E--AL--SGVSAIASGEWYSLALK----NGKVIAWGSSRT 247 (282)
T ss_dssp EECSSEEEEE-ETTEEEEEECCTTSTTCCCG---------G--GG--SSCCEEEECSSCEEEEE----TTEEEEESTTCC
T ss_pred EecCCEEEEE-ECCeEEEEECCCCCCCCCCc---------c--cC--CCceEEEcCCCEEEEEE----CCEEEEecCCCC
Confidence 9999999999 89999999999999998542 1 11 24889999999999996 899999999988
Q ss_pred cccCC
Q psy15269 558 VDVRP 562 (1858)
Q Consensus 558 gqLg~ 562 (1858)
++++-
T Consensus 248 gq~~v 252 (282)
T 3qhy_B 248 APSSV 252 (282)
T ss_dssp CCGGG
T ss_pred ccccC
Confidence 76653
No 13
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-34 Score=355.02 Aligned_cols=312 Identities=21% Similarity=0.260 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-+... ......+.++.|+|+||.|+-..+..+..... ++..+++||....
T Consensus 108 ~a~~lpil~~l~~~~~~~------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-----------~~~~~~~gg~~~~ 170 (434)
T 2db3_A 108 AAFLLPILSKLLEDPHEL------ELGRPQVVIVSPTRELAIQIFNEARKFAFESY-----------LKIGIVYGGTSFR 170 (434)
T ss_dssp HHHHHHHHHHHHHSCCCC------CTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS-----------CCCCEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc------ccCCccEEEEecCHHHHHHHHHHHHHHhccCC-----------cEEEEEECCCCHH
Confidence 456777777776543221 12334579999999999999998887766544 3557889999988
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHh--HHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVV--NKF 996 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~L--pk~ 996 (1858)
.+...+.++.+++++||+++++ ..+.........+|+|||++ |.++||.++ ++.|++.+ ++.
T Consensus 171 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~----------~~~~gf~~~----~~~i~~~~~~~~~ 236 (434)
T 2db3_A 171 HQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR----------MLDMGFSED----MRRIMTHVTMRPE 236 (434)
T ss_dssp HHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHCTTSCSS
T ss_pred HHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh----------hhccCcHHH----HHHHHHhcCCCCC
Confidence 8888888899999999999986 33344455666778888887 999999999 99998875 466
Q ss_pred HHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHH
Q psy15269 997 RAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIV 1074 (1858)
Q Consensus 997 RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~ 1074 (1858)
||+++| |||+|+.++++++.++++|+.+.+.... ...+.|.++.++..+|..
T Consensus 237 ~q~l~~--------------------------SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 290 (434)
T 2db3_A 237 HQTLMF--------------------------SATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 290 (434)
T ss_dssp CEEEEE--------------------------ESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHH
T ss_pred ceEEEE--------------------------eccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHH
Confidence 788888 9999999999999999999999886543 345999999999999999
Q ss_pred HHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC
Q psy15269 1075 NLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT 1152 (1858)
Q Consensus 1075 ~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp 1152 (1858)
.|++++.. .++||||+|++.|+.+++.|++.|+++..+||+++ |.+|.+++++|++|+.+||||||+++||||+|
T Consensus 291 ~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~---~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 291 KLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRL---QSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSC---HHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCC---HHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 99988864 66999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCccc
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHA 1212 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~ 1212 (1858)
+|++|||||+|.++++|+||+ +| .|.+++|+++.++..+++.|.+.++...+++|+++.+
T Consensus 368 ~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 368 NIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp TCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred cCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999 22 2389999997678899999999999999999986543
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=5e-28 Score=294.47 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=243.1
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+.....+ +...+.||.....+...+..+.++++.||+++++ ..+.
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~ 174 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNV-----------QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS 174 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCe-----------EEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC
Confidence 35689999999999999888776655544 3356688988888888888888999999999886 2333
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ |.+.||... +..|++.+++.+|.+++
T Consensus 175 ~~~~~~~~vViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~i~~------------------------ 216 (410)
T 2j0s_A 175 LRTRAIKMLVLDEADE----------MLNKGFKEQ----IYDVYRYLPPATQVVLI------------------------ 216 (410)
T ss_dssp SCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHTTSCTTCEEEEE------------------------
T ss_pred ccHhheeEEEEccHHH----------HHhhhhHHH----HHHHHHhCccCceEEEE------------------------
Confidence 3334456677888877 888999888 99998888888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccC--CcccEEEEEEECChhh-HHHHHHHhhc---CCcEEEEecChHHHHHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPS--SVHLVKQYLIRTPKSQ-KIVNLLSFLE---GKRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~--~~~~I~Q~~~~v~~~~-Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+|..+.++++.++.+|+.+.+... ....+.|.+..++..+ |...+..++. ..++||||+|++.++.+++
T Consensus 217 --SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 294 (410)
T 2j0s_A 217 --SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 294 (410)
T ss_dssp --ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHH
T ss_pred --EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHH
Confidence 999999999999999999999877543 3345888888876544 7777776664 3799999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------ 1174 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------ 1174 (1858)
.|++.|+.+..+||+++ +.+|.+++++|++|+.+||||||+++||+|+|++++|||||+|.+++.|+||+|
T Consensus 295 ~L~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 295 KMREANFTVSSMHGDMP---QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp HHHHTTCCCEEECTTSC---HHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred HHHhCCCceEEeeCCCC---HHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCC
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999992
Q ss_pred CcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCc
Q psy15269 1175 GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1175 g~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~ 1210 (1858)
..+.+++|+++ +|...++.|+++++....++|...
T Consensus 372 ~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 372 RKGVAINFVKN-DDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp CCEEEEEEEEG-GGHHHHHHHHHHTTCCCEECCSCC
T ss_pred CceEEEEEecH-HHHHHHHHHHHHhCCCceecccch
Confidence 23389999998 899999999999999888887543
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=290.43 Aligned_cols=285 Identities=19% Similarity=0.266 Sum_probs=238.4
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+.....+ +...+.||.....+..++.+..++++.||.+++. ..+.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRV-----------RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSC-----------CEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCc-----------eEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC
Confidence 34689999999999999888776554443 4567789988888888888889999999999985 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH--hHH--HHHHHhhhccCCCCccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV--VNK--FRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~--Lpk--~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
........+|+|||++ +.+.||.+. ++.|+.. +++ .+|.+++
T Consensus 171 ~~~~~~~~iViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~~~~~i~~-------------------- 216 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADR----------MLDMGFEPQ----IRRIVEQDTMPPKGVRHTMMF-------------------- 216 (417)
T ss_dssp BCCTTCCEEEESSHHH----------HHHTTCHHH----HHHHHTSSSCCCBTTBEEEEE--------------------
T ss_pred cChhhCcEEEEEChhH----------hhccCcHHH----HHHHHHhccCCCcCCcEEEEE--------------------
Confidence 2334455677888877 888898888 7777653 221 3344555
Q ss_pred ccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC--CcccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHH
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS--SVHLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~--~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad 1096 (1858)
|||+|..++++++.++.+|+.+.+... ....+.+.++.++..+|...+.++++. .++||||+|++.++
T Consensus 217 ------SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~ 290 (417)
T 2i4i_A 217 ------SATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGAD 290 (417)
T ss_dssp ------ESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHH
T ss_pred ------EEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHH
Confidence 999999999999999999998877543 344589999999999998888888763 68999999999999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---
Q psy15269 1097 RIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--- 1173 (1858)
Q Consensus 1097 ~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI--- 1173 (1858)
.+++.|++.|+.+..+||+++ +.+|.+++++|++|+.+||||||+++||+|+|++++||+||+|.++++|+||+
T Consensus 291 ~l~~~L~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (417)
T 2i4i_A 291 SLEDFLYHEGYACTSIHGDRS---QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367 (417)
T ss_dssp HHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTB
T ss_pred HHHHHHHHCCCCeeEecCCCC---HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCcc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred c--C-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 A--G-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 a--g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+ | .+.+++|+++ .|...++.|.+.++...+++|.
T Consensus 368 gR~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 404 (417)
T 2i4i_A 368 GRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPS 404 (417)
T ss_dssp CC--CCEEEEEEECG-GGGGGHHHHHHHHHHTTCCCCH
T ss_pred ccCCCCceEEEEEcc-ccHHHHHHHHHHHHHhcCcCCH
Confidence 2 2 2389999998 8889999999999998888875
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=4.2e-26 Score=291.78 Aligned_cols=306 Identities=14% Similarity=0.149 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-.... .....+.++-|+|+||.|+-..+..+..... ....+....+.||....
T Consensus 75 l~~~lpil~~l~~~~~~~-------~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~-------~~~~~~~~~~~gg~~~~ 140 (579)
T 3sqw_A 75 FAFLIPIFQHLINTKFDS-------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNY-------GLKKYACVSLVGGTDFR 140 (579)
T ss_dssp HHHHHHHHHHHHHTTTSS-------TTSCCEEEECSSHHHHHHHHHHHHHHHHHCG-------GGTTSCEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc-------cCCCeEEEEcchHHHHHHHHHHHHHHHhhcc-------cccceEEEEEECCccHH
Confidence 446677777776543211 1233468999999999999888776532110 00112345678888877
Q ss_pred hhhhhhhh-hcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 921 TAIIDIDK-FVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 921 ~q~~dl~~-~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
.+...+.+ ..++++.||+++++... .........+|+|||++ |.++||.++ ++.|+..+++.
T Consensus 141 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~----------l~~~gf~~~----~~~i~~~l~~~ 206 (579)
T 3sqw_A 141 AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR----------LLEIGFRDD----LETISGILNEK 206 (579)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH----------hhcCCCHHH----HHHHHHHhhhh
Confidence 77777765 68899999999986221 12223345567888877 999999999 99999999886
Q ss_pred H-------HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEcc------CCcccEEEE
Q psy15269 997 R-------AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKP------SSVHLVKQY 1063 (1858)
Q Consensus 997 R-------QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~------~~~~~I~Q~ 1063 (1858)
+ |++++ |||+|+.++++++.++.+|..+.+.. .....+.+.
T Consensus 207 ~~~~~~~~~~l~~--------------------------SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (579)
T 3sqw_A 207 NSKSADNIKTLLF--------------------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260 (579)
T ss_dssp CSSCTTCCEEEEE--------------------------ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred hcccccCceEEEE--------------------------eccCChHHHHHHHHHcCCCceEEEeecCccccccccccceE
Confidence 5 57777 99999999999999999998776642 122347777
Q ss_pred EEECChh-hH----HHHHHHhhc----CCcEEEEecChHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1064 LIRTPKS-QK----IVNLLSFLE----GKRSLIFVKTYRDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1064 ~~~v~~~-~K----l~~Ll~lL~----~~k~IIFvnTk~~ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
+..++.. .+ +..+...+. ..++||||+|++.|+.+++.|++. ++.+..+||+|+ +.+|.+++++|
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~---~~~R~~~~~~F 337 (579)
T 3sqw_A 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT---QNKRTSLVKRF 337 (579)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSC---HHHHHHHHHHH
T ss_pred EEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCC---HHHHHHHHHHh
Confidence 7766542 22 233333332 378999999999999999999986 999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
++|+.+||||||+++||||+|+|++|||||+|.+++.|+||+ +| .+.+++|+++ .|..+++.|++..+....
T Consensus 338 ~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 338 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIA 415 (579)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCC
T ss_pred hcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999 22 2389999998 899999999988765544
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.93 E-value=2e-26 Score=279.84 Aligned_cols=288 Identities=18% Similarity=0.210 Sum_probs=230.2
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh-hhccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID-KFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~-~~v~~l~~t~~~ll~--~~~ 945 (1858)
..+.++-|+|+||.|+-+.+..+...... +.....||.....+...+. ...++++.||+++++ ..+
T Consensus 109 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~ 177 (414)
T 3eiq_A 109 TQALVLAPTRELAQQIQKVVMALGDYMGA-----------SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR 177 (414)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHGGGSCC-----------CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT
T ss_pred eeEEEEeChHHHHHHHHHHHHHHhcccCc-----------eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 34689999999999999888776655444 2345677877666666666 467889999999885 333
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
+........+|+|||++ +.+.+|... +..|+..+++.+|.+++
T Consensus 178 ~~~~~~~~~vViDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 220 (414)
T 3eiq_A 178 YLSPKYIKMFVLDEADE----------MLSRGFKDQ----IYDIFQKLNSNTQVVLL----------------------- 220 (414)
T ss_dssp SSCSTTCCEEEECSHHH----------HHHTTTHHH----HHHHHTTSCTTCEEEEE-----------------------
T ss_pred CcccccCcEEEEECHHH----------hhccCcHHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 33344455677888877 788899888 99998888888888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+|..+.++++.++.+|..+.+..... ..+.+.++.+...+ |+..+..++.. .++||||++++.++.++
T Consensus 221 ---SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 297 (414)
T 3eiq_A 221 ---SATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT 297 (414)
T ss_dssp ---CSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH
T ss_pred ---EEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999987754433 34788888776544 77777777654 78999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC----
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG---- 1175 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag---- 1175 (1858)
+.|++.++.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+|+
T Consensus 298 ~~l~~~~~~~~~~h~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 298 EKMHARDFTVSAMHGDMD---QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp HHHHTTTCCCEEC---CH---HHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---
T ss_pred HHHHhcCCeEEEecCCCC---HHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999922
Q ss_pred --cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCCcc
Q psy15269 1176 --HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPH 1211 (1858)
Q Consensus 1176 --~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~ 1211 (1858)
.+.++.|+++ .+...++.++++++....++|..+.
T Consensus 375 g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (414)
T 3eiq_A 375 GRKGVAINMVTE-EDKRTLRDIETFYNTSIEEMPLNVA 411 (414)
T ss_dssp ----CEEEEECS-THHHHHHHHHHHTTCCCEECCC---
T ss_pred CCCceEEEEEcH-HHHHHHHHHHHHHcCCccccChhhh
Confidence 2379999998 8999999999999999888886543
No 18
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=1.4e-25 Score=285.22 Aligned_cols=307 Identities=15% Similarity=0.148 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-.... .....++++-|+|+||.|+-..+..+..... ...-+....+.||....
T Consensus 126 l~~~lpil~~l~~~~~~~-------~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~ 191 (563)
T 3i5x_A 126 FAFLIPIFQHLINTKFDS-------QYMVKAVIVAPTRDLALQIEAEVKKIHDMNY-------GLKKYACVSLVGGTDFR 191 (563)
T ss_dssp HHHHHHHHHHHHHTTTSS-------TTSCCEEEECSSHHHHHHHHHHHHHHHHHCG-------GGTTSCEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc-------cCCeeEEEEcCcHHHHHHHHHHHHHHHhhcc-------ccCceeEEEEECCcCHH
Confidence 446777777776543221 1233468999999999999888776532110 00112345678888877
Q ss_pred hhhhhhhh-hcccccccccccccCcc---ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHH
Q psy15269 921 TAIIDIDK-FVRDMRHVSNNILMSPN---YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKF 996 (1858)
Q Consensus 921 ~q~~dl~~-~v~~l~~t~~~ll~~~~---~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~ 996 (1858)
.+...+.+ ..++++.||+++++... .........+|+|||++ |.++||.++ ++.|+..+++.
T Consensus 192 ~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~----------l~~~~f~~~----~~~i~~~l~~~ 257 (563)
T 3i5x_A 192 AAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR----------LLEIGFRDD----LETISGILNEK 257 (563)
T ss_dssp HHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH----------HhccchHHH----HHHHHHhhhhc
Confidence 77777755 68899999999986221 11223345567888877 999999999 99999999876
Q ss_pred H-------HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC------CcccEEEE
Q psy15269 997 R-------AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS------SVHLVKQY 1063 (1858)
Q Consensus 997 R-------QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~------~~~~I~Q~ 1063 (1858)
+ |++++ |||+|..++++++.++.+|..+.+... ....+.+.
T Consensus 258 ~~~~~~~~~~l~~--------------------------SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 258 NSKSADNIKTLLF--------------------------SATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp CSSCTTCCEEEEE--------------------------ESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred cccCccCceEEEE--------------------------EccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 5 46677 999999999999999999987765322 22337777
Q ss_pred EEECChh-hHH----HHHHHhhc----CCcEEEEecChHHHHHHHHHHhhC---CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1064 LIRTPKS-QKI----VNLLSFLE----GKRSLIFVKTYRDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1064 ~~~v~~~-~Kl----~~Ll~lL~----~~k~IIFvnTk~~ad~L~~~L~~~---g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
+...+.. .+. ..+...+. ..++||||+|++.|+.+++.|++. ++.+..+||+|+ +.+|.+++++|
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~---~~~R~~~~~~f 388 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT---QNKRTSLVKRF 388 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSC---HHHHHHHHHHH
T ss_pred EEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCC---HHHHHHHHHHH
Confidence 7766542 332 22333332 379999999999999999999976 999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|+.+||||||+++||||+|+|++|||||+|.++++|+||+| | .+.++.|+++ .|..+++.|++..+.....
T Consensus 389 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 389 KKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp HHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCCE
T ss_pred hcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999992 2 2389999998 8999999999887665443
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=2.5e-25 Score=269.62 Aligned_cols=288 Identities=15% Similarity=0.118 Sum_probs=235.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+|+.|+-+.+..+.....+ +...+.||.....+...+....++++.||.+++. ...+.
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~ 159 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHCGI-----------SCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVA 159 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCS
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcccCc-----------eEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCc
Confidence 4688999999999999888777655443 3355677776655555565677889999999875 33344
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+++|||++ +.+.+|... ++.|+..+++.++.+++
T Consensus 160 ~~~~~~~vIiDEaH~----------~~~~~~~~~----~~~i~~~~~~~~~~i~l------------------------- 200 (400)
T 1s2m_A 160 DLSDCSLFIMDEADK----------MLSRDFKTI----IEQILSFLPPTHQSLLF------------------------- 200 (400)
T ss_dssp CCTTCCEEEEESHHH----------HSSHHHHHH----HHHHHTTSCSSCEEEEE-------------------------
T ss_pred ccccCCEEEEeCchH----------hhhhchHHH----HHHHHHhCCcCceEEEE-------------------------
Confidence 445556678999987 555555555 77776666655666666
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccC-CcccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHh
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPS-SVHLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQ 1103 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~-~~~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~ 1103 (1858)
|||+|..+.+....++.+|..+.+... ....+.+++..++...|...+..+++ ..++||||++++.++.+++.|+
T Consensus 201 -SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 279 (400)
T 1s2m_A 201 -SATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKIT 279 (400)
T ss_dssp -ESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHH
T ss_pred -EecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHH
Confidence 999999999999999999988766433 33458899989988888877777664 4799999999999999999999
Q ss_pred hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c---Ccc
Q psy15269 1104 DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A---GHK 1177 (1858)
Q Consensus 1104 ~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a---g~~ 1177 (1858)
+.|+.+..+||+++ +.+|..++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+ + ..+
T Consensus 280 ~~~~~~~~~~~~~~---~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 356 (400)
T 1s2m_A 280 DLGYSCYYSHARMK---QQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG 356 (400)
T ss_dssp HHTCCEEEECTTSC---HHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE
T ss_pred hcCCCeEEecCCCC---HHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999 2 223
Q ss_pred eEEEEecCcccHHHHHHHHHHHhhcCCCCCCCccc
Q psy15269 1178 EAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHA 1212 (1858)
Q Consensus 1178 ~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~~~~ 1212 (1858)
.++.|+++ +|...++.|++.++...+++|....+
T Consensus 357 ~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 357 LAINLINW-NDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp EEEEEECG-GGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred eEEEEecc-chHHHHHHHHHHhCCCcccccccccc
Confidence 89999998 88899999999999988888865443
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.92 E-value=3.6e-25 Score=266.68 Aligned_cols=288 Identities=17% Similarity=0.206 Sum_probs=235.9
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhh-ccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKF-VRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~-v~~l~~t~~~ll~--~~~ 945 (1858)
..+.++-|+|+|+.|+-+.+..+....|- ++...+.||.....+...+.++ .++++.||.+++. ...
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPN----------VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTT----------CCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCC----------eEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 34689999999999998887766554321 2446678888766666666654 6789999999885 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
.........+|+|||++ +.+ ++|... +..++...++.+|.+++
T Consensus 147 ~~~~~~~~~vViDEaH~----------~~~~~~~~~~----~~~~~~~~~~~~~~i~~---------------------- 190 (391)
T 1xti_A 147 SLNLKHIKHFILDECDK----------MLEQLDMRRD----VQEIFRMTPHEKQVMMF---------------------- 190 (391)
T ss_dssp SSCCTTCSEEEECSHHH----------HTSSHHHHHH----HHHHHHTSCSSSEEEEE----------------------
T ss_pred CccccccCEEEEeCHHH----------HhhccchHHH----HHHHHhhCCCCceEEEE----------------------
Confidence 23334556677898877 444 456566 77777777766677777
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc---ccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV---HLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRI 1098 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~---~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L 1098 (1858)
|||+|..++++++.++.+|..+.+..... ..+.+++..++..+|...+..+++ ..++||||++++.++.+
T Consensus 191 ----SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l 266 (391)
T 1xti_A 191 ----SATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIAL 266 (391)
T ss_dssp ----ESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHH
T ss_pred ----EeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHH
Confidence 99999999999999999999987765432 347888888888888887777764 48999999999999999
Q ss_pred HHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c-
Q psy15269 1099 ISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A- 1174 (1858)
Q Consensus 1099 ~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a- 1174 (1858)
++.|++.|+.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+ +
T Consensus 267 ~~~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 343 (391)
T 1xti_A 267 AQLLVEQNFPAIAIHRGMP---QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 343 (391)
T ss_dssp HHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSS
T ss_pred HHHHHhCCCcEEEEeCCCC---HHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999 2
Q ss_pred --CcceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1175 --GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1175 --g~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
..+.++.|+++.++..+++.+++.++...+++|..
T Consensus 344 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 344 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp SCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred CCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 22389999998667889999999998888888753
No 21
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=1.6e-24 Score=262.45 Aligned_cols=283 Identities=17% Similarity=0.171 Sum_probs=225.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc---Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM---SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~~~~ 946 (1858)
.+.++-|+|+||.|+.+.+..+....+- ++.....||....... ....++++.||+++++ ....
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~ 163 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPE----------LKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 163 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTT----------CCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCS
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhccc----------ceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCC
Confidence 4688999999999998887776554321 2233445554322211 2345789999999986 3234
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ +.+ .+|... +..|++.+++.+|.+++
T Consensus 164 ~~~~~~~~iViDEah~----------~~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 206 (412)
T 3fht_A 164 IDPKKIKVFVLDEADV----------MIATQGHQDQ----SIRIQRMLPRNCQMLLF----------------------- 206 (412)
T ss_dssp SCGGGCCEEEEETHHH----------HHSTTTTHHH----HHHHHHTSCTTCEEEEE-----------------------
T ss_pred cChhhCcEEEEeCHHH----------HhhcCCcHHH----HHHHHhhCCCCceEEEE-----------------------
Confidence 4445566677888877 555 677777 78888888777788888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHHHhhc---CCcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLLSFLE---GKRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~ 1099 (1858)
|||++..+.++++.++.+|..+.+.... ...+.+.++.++. ..|...+..++. ..++||||+|++.++.++
T Consensus 207 ---SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 207 ---SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp ---ESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred ---EeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 9999999999999999999988775433 3348888877764 567777766664 489999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
+.|++.++.+..+||+|+ +.+|.+++++|++|+.+|||||++++||+|+|++++||+||+|. +.++|+||+
T Consensus 284 ~~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 360 (412)
T 3fht_A 284 AELSKEGHQVALLSGEMM---VEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360 (412)
T ss_dssp HHHHHTTCCCEEECTTSC---HHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHH
T ss_pred HHHHhCCCeEEEecCCCC---HHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeeccc
Confidence 999999999999999999 99999999999999999999999999999999999999999995 568999999
Q ss_pred --c---Cc-ceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 --A---GH-KEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 --a---g~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+ |+ +.++.|+++.++...++.|++.++....+++.
T Consensus 361 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 361 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 2 22 38999999866789999999999988777664
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=2.8e-24 Score=255.71 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=231.7
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccc
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~ 945 (1858)
...+.++-|+|+|+.++-+.+..+.....+ +...+.||.....+...+. ..++++.||.+++. ..+
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~ 141 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNL-----------KIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG 141 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCC-----------CEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCc-----------eEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC
Confidence 334688999999999999888776655443 2345667766555544443 56788999998885 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.........+++|||++ +.+.+|... +..++..+++.++.+++
T Consensus 142 ~~~~~~~~~iIiDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 184 (367)
T 1hv8_A 142 TLNLKNVKYFILDEADE----------MLNMGFIKD----VEKILNACNKDKRILLF----------------------- 184 (367)
T ss_dssp CSCTTSCCEEEEETHHH----------HHTTTTHHH----HHHHHHTSCSSCEEEEE-----------------------
T ss_pred CcccccCCEEEEeCchH----------hhhhchHHH----HHHHHHhCCCCceEEEE-----------------------
Confidence 22233445577888877 778888777 88887777666666666
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQ 1103 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~ 1103 (1858)
|||+|..+.++++.++.++..+.... ...+.+.++.++..+|+..+..+++. .++||||++++.++.+++.|+
T Consensus 185 ---SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~ 259 (367)
T 1hv8_A 185 ---SATMPREILNLAKKYMGDYSFIKAKI--NANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLR 259 (367)
T ss_dssp ---CSSCCHHHHHHHHHHCCSEEEEECCS--SSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHH
T ss_pred ---eeccCHHHHHHHHHHcCCCeEEEecC--CCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999987776542 33678888899999999999998875 789999999999999999999
Q ss_pred hCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---c--C-cc
Q psy15269 1104 DSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---A--G-HK 1177 (1858)
Q Consensus 1104 ~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---a--g-~~ 1177 (1858)
+.|+.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++.+|+||+ + | .+
T Consensus 260 ~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g 336 (367)
T 1hv8_A 260 DIGFKAGAIHGDLS---QSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKG 336 (367)
T ss_dssp HTTCCEEEECSSSC---HHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCC
T ss_pred hcCCCeEEeeCCCC---HHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCcc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999 2 2 23
Q ss_pred eEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1178 EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1178 ~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
.++.++++ .|...++.|++.++.+..+++
T Consensus 337 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 337 KAISIINR-REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EEEEEECT-TSHHHHHHHHHHHTCCCCCBC
T ss_pred EEEEEEcH-HHHHHHHHHHHHhCCCCceec
Confidence 89999998 899999999999988776653
No 23
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=237.79 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=138.6
Q ss_pred HHHhcCCCEEEEEccCCc--ccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecC
Q psy15269 1040 SNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNN 1115 (1858)
Q Consensus 1040 a~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ 1115 (1858)
.-.||++|++|.++.... .+|+|+++.++..+|+..|++++.. .++||||+|++.++.+++.|++.|+.+..+||+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 457899999998865543 4599999999999999999999975 789999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------CcceEEEEecCcccH
Q psy15269 1116 GTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------GHKEAIAFYDPVADI 1189 (1858)
Q Consensus 1116 ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------g~~~aitfvt~~~e~ 1189 (1858)
|+ +.+|.+++++|++|+.+||||||+++||+|+|++++|||||+|.++++|+||+| ..+.+++|+++.++.
T Consensus 88 ~~---~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 88 KD---QEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp SC---HHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred CC---HHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99 999999999999999999999999999999999999999999999999999992 223899999985688
Q ss_pred HHHHHHHHHHhhcCCCCCCC
Q psy15269 1190 GLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1190 ~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.+++.|++.++...+++|+.
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~ 184 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPV 184 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHccCcCCHH
Confidence 99999999999999998863
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=5.2e-26 Score=283.69 Aligned_cols=283 Identities=17% Similarity=0.177 Sum_probs=96.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc---Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM---SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~---~~~~ 946 (1858)
.+.++-|+|+||.|+.+.+..+....+- +......||....... ....++++.||+++++ ....
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPE----------LKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTT----------CCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCC
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCC----------ceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCC
Confidence 4689999999999998877666544221 1233444554332211 2245689999999986 3234
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+||+++ |.+ .||... +..|++.+++.+|.+++
T Consensus 231 ~~~~~~~~iViDEah~----------~~~~~~~~~~----~~~i~~~~~~~~~~i~~----------------------- 273 (479)
T 3fmp_B 231 IDPKKIKVFVLDEADV----------MIATQGHQDQ----SIRIQRMLPRNCQMLLF----------------------- 273 (479)
T ss_dssp CCGGGCCEEEECCHHH----------HHTSTTHHHH----HHHHHTTSCTTSEEEEE-----------------------
T ss_pred cCcccCCEEEEECHHH----------HhhcCCcHHH----HHHHHhhCCccceEEEE-----------------------
Confidence 4445667778999987 665 688777 88888888888888898
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECCh-hhHHHHHHHhhcC---CcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPK-SQKIVNLLSFLEG---KRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~-~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+|..+.++++.++.+|..+.+.... ...+.|.++.++. ..|...|..++.. .++||||+|++.++.++
T Consensus 274 ---SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 274 ---SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp ---ESCCCHHHHHHHHHHSSSEEEEEEC----------------------------------------------------
T ss_pred ---eCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 9999999999999999999998886543 3347888877764 5677777776653 78999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
+.|.+.++.+..+||+|+ +.+|..++++|++|+.+|||||++++||||+|+|++|||||+|. +.++|+||+
T Consensus 351 ~~L~~~~~~v~~lh~~~~---~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 351 AELSKEGHQVALLSGEMM---VEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCccEEEecCCCC---HHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHh
Confidence 999999999999999999 99999999999999999999999999999999999999999995 568999999
Q ss_pred --c---Cc-ceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1174 --A---GH-KEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1174 --a---g~-~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+ |+ |.+++|+++.++..+++.|++.++.....++.
T Consensus 428 GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 428 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp -----------------------------------------
T ss_pred cccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 2 22 37999999866789999999999887776653
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.90 E-value=2.3e-23 Score=250.27 Aligned_cols=282 Identities=17% Similarity=0.143 Sum_probs=221.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+....++.. ....|+.... ......++++.||.++++ ....
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~ 140 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITS-----------QLIVPDSFEK----NKQINAQVIVGTPGTVLDLMRRKL 140 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCE-----------EEESTTSSCT----TSCBCCSEEEECHHHHHHHHHTTC
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeE-----------EEEecCchhh----hccCCCCEEEEcHHHHHHHHHcCC
Confidence 3568999999999999998877765554422 2333332211 112246788999999885 2333
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+++|||++ +.+ .+|... +..+...+++.+|.+++
T Consensus 141 ~~~~~~~~iIiDEah~----------~~~~~~~~~~----~~~~~~~~~~~~~~i~~----------------------- 183 (395)
T 3pey_A 141 MQLQKIKIFVLDEADN----------MLDQQGLGDQ----CIRVKRFLPKDTQLVLF----------------------- 183 (395)
T ss_dssp BCCTTCCEEEEETHHH----------HHHSTTHHHH----HHHHHHTSCTTCEEEEE-----------------------
T ss_pred cccccCCEEEEEChhh----------hcCccccHHH----HHHHHHhCCCCcEEEEE-----------------------
Confidence 3444556677888877 555 677666 77777777777777777
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECC-hhhHHHHHHHhhc---CCcEEEEecChHHHHHHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTP-KSQKIVNLLSFLE---GKRSLIFVKTYRDASRII 1099 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~-~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~ 1099 (1858)
|||+++.+.++++.++.++..+.+.... ...+.+.+..+. ...|...+..++. ..++||||++++.++.++
T Consensus 184 ---SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 260 (395)
T 3pey_A 184 ---SATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLY 260 (395)
T ss_dssp ---ESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHH
T ss_pred ---EecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHH
Confidence 9999999999999999999888765433 334788887774 4566666666655 389999999999999999
Q ss_pred HHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC------Chhhhhhhc
Q psy15269 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL------SINHYVFQI 1173 (1858)
Q Consensus 1100 ~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~------~~e~YIHRI 1173 (1858)
+.|++.++.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|. ++.+|+||+
T Consensus 261 ~~l~~~~~~~~~~~~~~~---~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 337 (395)
T 3pey_A 261 GKLKSEGHEVSILHGDLQ---TQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRI 337 (395)
T ss_dssp HHHHHTTCCCEEECTTSC---HHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCC---HHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhc
Confidence 999999999999999999 99999999999999999999999999999999999999999999 999999999
Q ss_pred c-----Cc-ceEEEEecCcccHHHHHHHHHHHh-hcCCCCCC
Q psy15269 1174 A-----GH-KEAIAFYDPVADIGLASSLIKLLE-YSNKHVPT 1208 (1858)
Q Consensus 1174 a-----g~-~~aitfvt~~~e~~~l~~Ie~~l~-~~~q~ip~ 1208 (1858)
| |+ +.++.|+.+.++..+++.+++.++ .....+|.
T Consensus 338 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 338 GRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred cccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 2 22 389999998677888999998887 44445543
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.90 E-value=6.5e-25 Score=264.41 Aligned_cols=285 Identities=18% Similarity=0.227 Sum_probs=100.9
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+.....+ +...+.||.....+...+. ..++++.||.+++. ..+.
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~ 157 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDI-----------KVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR 157 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCe-----------eEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC
Confidence 35689999999999998888777665544 3355677766554444443 56789999999875 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+++|||++ +.+.+|... +..++..+++.++.+++
T Consensus 158 ~~~~~~~~vIiDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~------------------------ 199 (394)
T 1fuu_A 158 FRTDKIKMFILDEADE----------MLSSGFKEQ----IYQIFTLLPPTTQVVLL------------------------ 199 (394)
T ss_dssp SCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cchhhCcEEEEEChHH----------hhCCCcHHH----HHHHHHhCCCCceEEEE------------------------
Confidence 2233445677888877 777888888 88888888777777777
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEEEEECChhh-HHHHHHHhhc---CCcEEEEecChHHHHHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQYLIRTPKSQ-KIVNLLSFLE---GKRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~~~~v~~~~-Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+|..+.++...++.+|+.+.+..... ..+.+.+..++..+ |...+..+++ ..++||||++++.++.+++
T Consensus 200 --SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 277 (394)
T 1fuu_A 200 --SATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTT 277 (394)
T ss_dssp --CSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------------------------
T ss_pred --EEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHH
Confidence 99999999999999999999988765433 23677777665544 6566655554 3789999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC--
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG-- 1175 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag-- 1175 (1858)
.|++.++.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+ ++
T Consensus 278 ~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 354 (394)
T 1fuu_A 278 KLRNDKFTVSAIYSDLP---QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 354 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCeEEEeeCCCC---HHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999 22
Q ss_pred -cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1176 -HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1176 -~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
.+.++.|+++ +|...++.|+++++....++|..
T Consensus 355 ~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 388 (394)
T 1fuu_A 355 RKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSD 388 (394)
T ss_dssp -----------------------------------
T ss_pred CCceEEEEEch-hHHHHHHHHHHHhCCcccccCcc
Confidence 2379999998 78889999999998888877753
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.90 E-value=4.3e-24 Score=276.05 Aligned_cols=282 Identities=9% Similarity=-0.012 Sum_probs=194.9
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-----ccCc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-----LMSP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-----l~~~ 944 (1858)
.+.++.|+|+||.++...++.+.....+ +..+++||+. .+.+....+++++++||+++ .|..
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~lgl-----------~v~~i~gg~~--~~~r~~~~~~dIv~gTpgrlgfD~L~D~m 192 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFLGL-----------TVGLNLNSMS--KDEKREAYAADITYSTNNELGFDYLRDNM 192 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTC-----------CEEECCTTSC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhcCC-----------eEEEEeCCCC--HHHHHHhcCCCEEEECchhhhHHHHHHhh
Confidence 4789999999999999998888776666 4477899975 55566666899999999999 4433
Q ss_pred ----cccccccccceeecccchhhhhhHHhhhhh-hcCCCc-----------hhhHHHHHHHHHhH---------HHHHH
Q psy15269 945 ----NYESDVNKYSVLLKYIPQQYKNLVYSYLIQ-QTALSP-----------REKTVLEQIFSVVN---------KFRAE 999 (1858)
Q Consensus 945 ----~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~-~mGF~~-----------~~~esL~~Il~~Lp---------k~RQt 999 (1858)
+.........+|+||||+ |+ ++++.| .+-..+..|++.++ +.||+
T Consensus 193 ~~~~~~l~lr~~~~lVlDEaD~----------mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~ 262 (844)
T 1tf5_A 193 VLYKEQMVQRPLHFAVIDEVDS----------ILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAV 262 (844)
T ss_dssp CSSGGGCCCCCCCEEEEETHHH----------HHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCC
T ss_pred hcchhhhcccCCCEEEECchhh----------hhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceE
Confidence 233445667888999988 66 787543 12233888888876 35555
Q ss_pred HhhhccCCCCcccccccccccccccccCCCCCCcHhHHHH-----HHHhcC-C--CEE----------------------
Q psy15269 1000 LLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEE-----SNIEVE-D--PIM---------------------- 1049 (1858)
Q Consensus 1000 LLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~l-----a~~~L~-d--pv~---------------------- 1049 (1858)
+|.. .+...-.........+|||+|..+..+ |+.+++ | ++.
T Consensus 263 ~lt~---------~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~s 333 (844)
T 1tf5_A 263 QLTE---------EGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYS 333 (844)
T ss_dssp CBCH---------HHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCS
T ss_pred EecH---------HHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccc
Confidence 4110 000000000001124477766433332 333332 1 110
Q ss_pred ------------EEEccC----------------------------------------------Cccc--EE-EEEEECC
Q psy15269 1050 ------------KLVKPS----------------------------------------------SVHL--VK-QYLIRTP 1068 (1858)
Q Consensus 1050 ------------I~v~~~----------------------------------------------~~~~--I~-Q~~~~v~ 1068 (1858)
|.+..+ .... +. +.++.+.
T Consensus 334 dGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~ 413 (844)
T 1tf5_A 334 EGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRT 413 (844)
T ss_dssp TTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESS
T ss_pred hhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeC
Confidence 000000 0000 11 2255677
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1069 KSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
..+|...|+..+. ..++||||+|++.++.|++.|++.|+++..|||++. |++|..+.++|+.| .|+||||
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~---~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH---EREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH---HHHHHHHTTTTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc---HHHHHHHHHcCCCC--eEEEeCC
Confidence 8899998888764 367999999999999999999999999999999998 88888777777766 6999999
Q ss_pred ccccCCCCC--------CcceEEEcCCCCChhhhhhhc---cCc---ceEEEEecCccc
Q psy15269 1144 SDFIGNDFT--------NVEQVIIYNLPLSINHYVFQI---AGH---KEAIAFYDPVAD 1188 (1858)
Q Consensus 1144 VAARGLDIp--------~V~~VINyDlP~~~e~YIHRI---ag~---~~aitfvt~~~e 1188 (1858)
+|+||+||+ ++.||||||+|.+.+.|+||+ |+. |.+++|+++.++
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999999 888999999999999999999 222 289999998443
No 28
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=235.09 Aligned_cols=151 Identities=14% Similarity=0.220 Sum_probs=134.4
Q ss_pred eEecCCCceE-EEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCCCcee
Q psy15269 1412 VSFDKEKCVC-CTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTTGDMW 1489 (1858)
Q Consensus 1412 f~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~~~~W 1489 (1858)
+.|||+.++. +.+++|+++++. ..+++.++|+++|++|+||||++|.....+. ...||+|+.+.. +..+|++..||
T Consensus 13 v~ld~~d~~~~l~ls~d~l~v~~-~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~-~~~iG~a~~~~~~~~~~G~d~~S~ 90 (213)
T 3toj_A 13 VLLALHDRAPQLKISDDRLTVVG-EKGYSMVRASHGVRKGAWYFEITVDEMPPDT-AARLGWSQPLGNLQAPLGYDKFSY 90 (213)
T ss_dssp CCEEEEEECTTSEECTTSSEEEC-CSSCEEEEESCCBSSEEEEEEEEEEECCTTC-EEEEEEECTTSCTTSCTTSSTTEE
T ss_pred EEechhhCCCCEEEcCCCcEEEe-CCceeEEEeCCCccCCeEEEEEEEeecCCCc-eEEEEeccCCcccccCCCCCCCcE
Confidence 7899999999 999999999987 6789999999999999999999998754322 389999999988 88999999999
Q ss_pred EEEeCCceeeeCCCCCccCCCcCCCCEEEEEEeccC--------ceEEEEeCCccccccccCCCCCCceeEEEEEeecCC
Q psy15269 1490 LYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDA--------QTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNA 1561 (1858)
Q Consensus 1490 ~y~~~~g~~~h~~~~~~~~~~~~~gd~i~v~lDm~~--------~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~ 1561 (1858)
+|++++|..||++....++++|.+||+|||.|||++ ++|+|++||+.+|+||+++..+ .||||||++.
T Consensus 91 gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~~~-~lyPavsl~~--- 166 (213)
T 3toj_A 91 SWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFEG-VYFPAISLYK--- 166 (213)
T ss_dssp EEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCCSS-CBEEEEEEES---
T ss_pred EEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEcCCCC-cEEEEEEcCC---
Confidence 999999999999877888999999999999999999 7999999999999999999766 5999999964
Q ss_pred CCCeEEEE
Q psy15269 1562 NGEKVKIT 1569 (1858)
Q Consensus 1562 ~~~~v~~~ 1569 (1858)
|..|++.
T Consensus 167 -~~~v~~N 173 (213)
T 3toj_A 167 -SCTVSIN 173 (213)
T ss_dssp -SCEEEEE
T ss_pred -CCEEEEE
Confidence 4455544
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=2.3e-23 Score=254.83 Aligned_cols=270 Identities=15% Similarity=0.082 Sum_probs=207.4
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC---chhhhhhhhh-cccccccccccccCc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP---STAIIDIDKF-VRDMRHVSNNILMSP 944 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~---~~q~~dl~~~-v~~l~~t~~~ll~~~ 944 (1858)
..+.++-|+|+||.|+-..+..+.. ..+ +...+.||... ..+...+.++ .++++.||+++++..
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~-----------~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l 132 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-EKV-----------KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 132 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-SSC-----------CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-CCc-----------eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHH
Confidence 3468999999999999998887654 333 45678899887 4566666666 889999999998644
Q ss_pred cccccccccceeecccchhhhhhHH----hhhhhh-cCCCchhhHHHHHHHHHhH-----------HHHHHHhhhccCCC
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVY----SYLIQQ-TALSPREKTVLEQIFSVVN-----------KFRAELLSAVSNAP 1008 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~----A~lL~~-mGF~~~~~esL~~Il~~Lp-----------k~RQtLLf~~~~~~ 1008 (1858)
..........+|+|||.. +.. .+.|++ +||.++ .++.|++.++ ..+|.+++
T Consensus 133 ~~~~~~~~~~iViDEaH~----~~~~~~~~d~~l~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~~~~i~~------ 199 (414)
T 3oiy_A 133 EKLSQKRFDFVFVDDVDA----VLKASRNIDTLLMMVGIPEE---IIRKAFSTIKQGKIYERPKNLKPGILVVS------ 199 (414)
T ss_dssp HHHTTCCCSEEEESCHHH----HHHCHHHHHHHHHHTTCCHH---HHHHHHHHHHHTCCCCCCTTCCCCEEEES------
T ss_pred HHhccccccEEEEeChHh----hhhccchhhhHHhhcCCcHH---HHHHHHHhcccchhhhhcccCCCceEEEE------
Confidence 334444567788999965 211 156888 999877 3677788777 44555555
Q ss_pred CcccccccccccccccccCCCCC-CcHhHH-HHHHHhcCCCEEEEEc--cCCcccEEEEEEECChhhHHHHHHHhhcCCc
Q psy15269 1009 SFDDNNVSMGVTSTQHNSTDSLF-SWGDIE-EESNIEVEDPIMKLVK--PSSVHLVKQYLIRTPKSQKIVNLLSFLEGKR 1084 (1858)
Q Consensus 1009 s~~~~~~s~~~~~~~~~~~eSAT-~p~~I~-~la~~~L~dpv~I~v~--~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k 1084 (1858)
||| .|..+. .+.+.++. +.+. ......+.|.++.+++.+++..++... ..+
T Consensus 200 --------------------SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~-~~~ 254 (414)
T 3oiy_A 200 --------------------SATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSRSKEKLVELLEIF-RDG 254 (414)
T ss_dssp --------------------SCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESSCCHHHHHHHHHHH-CSS
T ss_pred --------------------ecCCCcchhHHHHHHHhhc----cCcCccccccccchheeeccCHHHHHHHHHHHc-CCC
Confidence 999 676665 34444443 1121 223345889888887777766666553 489
Q ss_pred EEEEecChHHHHHHHHHHhhCCCeEE-EEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCC-cceEE
Q psy15269 1085 SLIFVKTYRDASRIISAVQDSNMMTI-PMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTN-VEQVI 1158 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~~g~~~~-~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~-V~~VI 1158 (1858)
+||||+|++.++.+++.|++.|+.+. .+||+ +|. +++|++|+++|||| ||+++||+|+|+ |++||
T Consensus 255 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-------~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 255 ILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-------EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEESSSCH-------HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCceehhhcCc-------chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE
Confidence 99999999999999999999999998 99984 333 99999999999999 999999999999 99999
Q ss_pred EcCCC--CChhhhhhhc---cC-------cceEEEEecCcccHHHHHHHHHHHh
Q psy15269 1159 IYNLP--LSINHYVFQI---AG-------HKEAIAFYDPVADIGLASSLIKLLE 1200 (1858)
Q Consensus 1159 NyDlP--~~~e~YIHRI---ag-------~~~aitfvt~~~e~~~l~~Ie~~l~ 1200 (1858)
|||+| .++++|+||+ |+ ++.+++|+ +|...++.|++.++
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 99999 9999999999 21 34788888 56788899999888
No 30
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=4.3e-22 Score=214.27 Aligned_cols=148 Identities=19% Similarity=0.323 Sum_probs=135.0
Q ss_pred CCcccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1055 ~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
....+|+|+++.++..+|+..|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|..++++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~---~~~r~~~~~~f 81 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMI---QEDRFDVMNEF 81 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHH
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHH
Confidence 3455699999999999999999988863 78999999999999999999999999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
++|+.+||||||+++||+|+|++++|||||+|.++++|+||+ .| .+.+++|+++ .|..+++.|++.++.+.++
T Consensus 82 ~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 82 KRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA-FEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp HTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTSCCEE
T ss_pred HcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecH-HHHHHHHHHHHHHCCCcCc
Confidence 999999999999999999999999999999999999999999 22 2389999998 8999999999998876655
Q ss_pred C
Q psy15269 1206 V 1206 (1858)
Q Consensus 1206 i 1206 (1858)
+
T Consensus 161 ~ 161 (163)
T 2hjv_A 161 I 161 (163)
T ss_dssp C
T ss_pred c
Confidence 4
No 31
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=3.6e-22 Score=217.18 Aligned_cols=148 Identities=19% Similarity=0.294 Sum_probs=135.6
Q ss_pred ccEEEEEEECChhhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1058 HLVKQYLIRTPKSQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1058 ~~I~Q~~~~v~~~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
.+|+|+|+.++..+|+..|.++++. .++||||++++.++.+++.|++.|+.+..+||+|+ +.+|..++++|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~---~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP---QEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCC---HHHHHHHHHHHHCC
Confidence 4689999999999999999988863 78999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+.+||||||+++||+|+|++++|||||+|.++++|+||+ +..+.+++|+++.++...++.|++.++....++|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999 22338999999856778999999999988887775
No 32
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.87 E-value=1.6e-22 Score=260.77 Aligned_cols=283 Identities=10% Similarity=-0.010 Sum_probs=173.3
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-cc----Cc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-LM----SP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-l~----~~ 944 (1858)
.+.++.|+|+||.|+...++.+.....+ +..+++||+. .+.+.+..+++++++||+++ +| ..
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lgl-----------~v~~i~GG~~--~~~r~~~~~~dIvvgTpgrl~fDyLrd~~ 183 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLGL-----------TVGINLPGMP--APAKREAYAADITYGTNNEYGFDYLRDNM 183 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTTC-----------CEEECCTTCC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcCC-----------eEEEEeCCCC--HHHHHHhcCCCEEEECCchhhHHHHHhhh
Confidence 4789999999999999998888777666 4577899976 56666667899999999998 33 22
Q ss_pred ----cccccccccceeecccchhhhhhHHhhhhh-hcC---------------CCchhhHHHHHHHHHhHH---------
Q psy15269 945 ----NYESDVNKYSVLLKYIPQQYKNLVYSYLIQ-QTA---------------LSPREKTVLEQIFSVVNK--------- 995 (1858)
Q Consensus 945 ----~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~-~mG---------------F~~~~~esL~~Il~~Lpk--------- 995 (1858)
+.........+|+||||+ |+ ++| |.++ +..|++.+++
T Consensus 184 ~~~~~~~~~~~l~~lVlDEaD~----------mLiD~a~tpLIiSg~~~~~~~~y~~----i~~iv~~L~~~~~~~~~~~ 249 (853)
T 2fsf_A 184 AFSPEERVQRKLHYALVDEVDS----------ILIDEARTPLIISGPAEDSSEMYKR----VNKIIPHLIRQEKEDSETF 249 (853)
T ss_dssp CSSGGGCCCCSCCEEEESCHHH----------HTTTTTTCEEEEEEC---------------------------------
T ss_pred hccHhHhcccCCcEEEECchHH----------HHHhcCcccccccCCCccchhHHHH----HHHHHHhchhhhccccccc
Confidence 224445677888999988 55 554 5566 8899998875
Q ss_pred -----------HHHHHhhhccCCCCcccccc-cccccccccccCCCCCCcHhHHHH-----HHHh---------------
Q psy15269 996 -----------FRAELLSAVSNAPSFDDNNV-SMGVTSTQHNSTDSLFSWGDIEEE-----SNIE--------------- 1043 (1858)
Q Consensus 996 -----------~RQtLLf~~~~~~s~~~~~~-s~~~~~~~~~~~eSAT~p~~I~~l-----a~~~--------------- 1043 (1858)
.||+++. +.+........ ..+. .......+|||+|+.+..+ |+.+
T Consensus 250 ~~~~dy~vdek~rqv~lt--e~g~~~~e~~l~~~~l-~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vv 326 (853)
T 2fsf_A 250 QGEGHFSVDEKSRQVNLT--ERGLVLIEELLVKEGI-MDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI 326 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeccccceEEEc--HHHHHHHHHHHHhCCc-ccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEE
Confidence 5666543 11111000000 0000 0000124577765432222 1111
Q ss_pred ---------cC-------------CCEEEEEccCCcc--cEEE-------------------------------------
Q psy15269 1044 ---------VE-------------DPIMKLVKPSSVH--LVKQ------------------------------------- 1062 (1858)
Q Consensus 1044 ---------L~-------------dpv~I~v~~~~~~--~I~Q------------------------------------- 1062 (1858)
|. .+..|.+..++.+ .|.+
T Consensus 327 iVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPt 406 (853)
T 2fsf_A 327 IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPT 406 (853)
T ss_dssp ------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCC
T ss_pred EEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCC
Confidence 11 1122333332222 1332
Q ss_pred ----------EEEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHH
Q psy15269 1063 ----------YLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLEL 1127 (1858)
Q Consensus 1063 ----------~~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~ 1127 (1858)
.++.++..+|...+++.+. ..++||||+|++.++.|++.|++.|+++..|||++. +++|..+
T Consensus 407 n~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~---~rEa~ii 483 (853)
T 2fsf_A 407 NRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFH---ANEAAIV 483 (853)
T ss_dssp SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCH---HHHHHHH
T ss_pred CCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChh---HHHHHHH
Confidence 2456788899999888763 267999999999999999999999999999999998 9999888
Q ss_pred HHHHhcCCCcEEEeccccccCCCCCC--------------------------------c-----ceEEEcCCCCChhhhh
Q psy15269 1128 LNLFNTGKSSLVIMTLSDFIGNDFTN--------------------------------V-----EQVIIYNLPLSINHYV 1170 (1858)
Q Consensus 1128 L~~Fr~G~~~ILVATDVAARGLDIp~--------------------------------V-----~~VINyDlP~~~e~YI 1170 (1858)
.++|+.| .|+||||+|+||+||+. | .||||||+|.+.+.|+
T Consensus 484 a~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~ 561 (853)
T 2fsf_A 484 AQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDN 561 (853)
T ss_dssp HTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHH
T ss_pred HhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHH
Confidence 8999988 69999999999999997 4 6999999999999999
Q ss_pred hhc---cCcc---eEEEEecCcc
Q psy15269 1171 FQI---AGHK---EAIAFYDPVA 1187 (1858)
Q Consensus 1171 HRI---ag~~---~aitfvt~~~ 1187 (1858)
||+ |+.| .+++|++..+
T Consensus 562 qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 562 QLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhccccccCCCCeeEEEEecccH
Confidence 999 2222 8999999733
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.87 E-value=6.7e-23 Score=278.18 Aligned_cols=237 Identities=14% Similarity=0.073 Sum_probs=184.8
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC---chhhhhhhhh-cccccccccccccCc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP---STAIIDIDKF-VRDMRHVSNNILMSP 944 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~---~~q~~dl~~~-v~~l~~t~~~ll~~~ 944 (1858)
..+.++.|+|+||.|+-..+..+. +.++ +...+.||... ..+...+.++ .++++.||+++++..
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~-~~~i-----------~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l 189 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA-DEKV-----------KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNR 189 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS-CTTS-----------CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSH
T ss_pred CeEEEEechHHHHHHHHHHHHHhh-CCCC-----------eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 346899999999999999998866 4443 45778999987 5566666666 889999999997643
Q ss_pred cccccccccceeecccchhhhhhHH----hhhhhh-cCCCchhhHHHHHHHHHhH-----------HHHHHHhhhccCCC
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVY----SYLIQQ-TALSPREKTVLEQIFSVVN-----------KFRAELLSAVSNAP 1008 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~----A~lL~~-mGF~~~~~esL~~Il~~Lp-----------k~RQtLLf~~~~~~ 1008 (1858)
..........+|+|||+. +.. .|.|++ +||.++ .++.|++.+| +.+|+++|
T Consensus 190 ~~l~~~~l~~lViDEaH~----l~~~~r~~Dr~L~~~gf~~~---~i~~il~~l~~~~~~~~~~~~~~~q~ll~------ 256 (1104)
T 4ddu_A 190 EKLSQKRFDFVFVDDVDA----VLKASRNIDTLLMMVGIPEE---IIRKAFSTIKQGKIYERPKNLKPGILVVS------ 256 (1104)
T ss_dssp HHHHTSCCSEEEESCHHH----HTTSSHHHHHHHHTSSCCHH---HHHHHHHHHHHTSCCCCCSSCCCCEEEEE------
T ss_pred HhhcccCcCEEEEeCCCc----cccccccchhhhHhcCCCHH---HHHHHHHhcccchhhhhhccCCCceEEEE------
Confidence 333344567788999954 221 156888 999887 4688888888 56677777
Q ss_pred CcccccccccccccccccCCCCC-CcHhHHH-HHHHhcCCCEEEEEc--cCCcccEEEEEEECChhhHHHHHHHhhcCCc
Q psy15269 1009 SFDDNNVSMGVTSTQHNSTDSLF-SWGDIEE-ESNIEVEDPIMKLVK--PSSVHLVKQYLIRTPKSQKIVNLLSFLEGKR 1084 (1858)
Q Consensus 1009 s~~~~~~s~~~~~~~~~~~eSAT-~p~~I~~-la~~~L~dpv~I~v~--~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k 1084 (1858)
||| .|..+++ +.+..+. +.+. .....++.|.++.+++..++..++..+ ..+
T Consensus 257 --------------------SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~~-~~~ 311 (1104)
T 4ddu_A 257 --------------------SATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSRSKEKLVELLEIF-RDG 311 (1104)
T ss_dssp --------------------CBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCCCHHHHHHHHHHH-CSS
T ss_pred --------------------cCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecCHHHHHHHHHHhc-CCC
Confidence 999 7777663 3444433 2222 233445899998887666666555553 389
Q ss_pred EEEEecChHHHHHHHHHHhhCCCeEE-EEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCC-cceEE
Q psy15269 1085 SLIFVKTYRDASRIISAVQDSNMMTI-PMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTN-VEQVI 1158 (1858)
Q Consensus 1085 ~IIFvnTk~~ad~L~~~L~~~g~~~~-~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~-V~~VI 1158 (1858)
+||||+|++.++.+++.|++.|+.+. .+||+ |.+ +++|++|+.+|||| ||+++||||||+ |++||
T Consensus 312 ~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~--------rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 312 ILIFAQTEEEGKELYEYLKRFKFNVGETWSEF--------EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTCCEEESSSSH--------HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCeeeEecCc--------HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 99999999999999999999999998 99992 344 99999999999999 999999999999 99999
Q ss_pred EcCCCC
Q psy15269 1159 IYNLPL 1164 (1858)
Q Consensus 1159 NyDlP~ 1164 (1858)
|||+|.
T Consensus 383 ~~d~P~ 388 (1104)
T 4ddu_A 383 FWGTPS 388 (1104)
T ss_dssp EESCCE
T ss_pred EECCCC
Confidence 999999
No 34
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.87 E-value=2e-22 Score=227.57 Aligned_cols=145 Identities=22% Similarity=0.359 Sum_probs=123.7
Q ss_pred eeEecCCCceE-EEEecCCeEEEecC--CCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cCC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGP--GTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DYN 1481 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~~ 1481 (1858)
.++|||++++. +++++|+.++++.. .++..+||+.+|++|.||||++|....++.. ..||||+..+. +..
T Consensus 43 ~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~-~~vGv~~~~~~r~~~g~~~~ 121 (217)
T 3emw_A 43 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTH-AVVGVATALAPLQTDHYAAL 121 (217)
T ss_dssp HTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTC-CEEEEECTTSCCEESSSCCC
T ss_pred ceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCc-eeEEEEcCccccccCCcccc
Confidence 37899999999 99999999998853 2456899999999999999999886654443 88999998775 457
Q ss_pred CCCCCceeEEEeCCceeeeCCCC--CccC------CCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQ--TTML------PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPI 1553 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~--~~~~------~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~ 1553 (1858)
.|+++.+|+|+.++|..+|+++. ...+ |.|..||+|||.|||++|||+|++||+.+|+||+++.+ ++|||+
T Consensus 122 lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~~-~~LyP~ 200 (217)
T 3emw_A 122 LGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKG-RTLYPA 200 (217)
T ss_dssp TTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCTT-CCBEEE
T ss_pred ccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEECCCC-CEEEEE
Confidence 88999999999889999999874 2233 56899999999999999999999999999999999964 479999
Q ss_pred EEEe
Q psy15269 1554 VLFY 1557 (1858)
Q Consensus 1554 Vs~y 1557 (1858)
||++
T Consensus 201 ~sl~ 204 (217)
T 3emw_A 201 VSAV 204 (217)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9973
No 35
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=216.06 Aligned_cols=144 Identities=21% Similarity=0.247 Sum_probs=124.7
Q ss_pred EEEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc-cCCCCCCCceeEEEeCCceee
Q psy15269 1421 CCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR-DYNHRTTGDMWLYRAYSGNVY 1499 (1858)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~-~~~~~~~~~~W~y~~~~g~~~ 1499 (1858)
.+.++++..++...+.+.+.++|++++++|+||||++|....++. .++||+++.+.. ++++|++..||+|+.++|..|
T Consensus 10 ~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~-~~~IG~a~~~~~~~~~~G~d~~S~gy~~~dG~~~ 88 (171)
T 2yyo_A 10 HILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRG-TIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLY 88 (171)
T ss_dssp SEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTC-CCEEEEECTTCCTTSCTTSSTTCEEEETTTCCEE
T ss_pred eEEEcCCEEEEeCCCCceeEEEECCCCCCCCEEEEEEEEECCCCc-EEEEEecCCCCCCccCCCccCCEEEEEcCCCeEE
Confidence 377777766665555578999999999999999999999886433 499999999887 889999999999999999999
Q ss_pred eCCCC-CccCCCcCCCCEEEEEEeccC-----ceEEEEeCCccccccccCCCCCCceeEEEEEeecCCCCCeEEEE
Q psy15269 1500 HSGEQ-TTMLPSFTQGDYITVVLDMDA-----QTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKIT 1569 (1858)
Q Consensus 1500 h~~~~-~~~~~~~~~gd~i~v~lDm~~-----~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~~~~~~~v~~~ 1569 (1858)
|++.. ..++|+|.+||+|||.|||++ +||+|++||+.+|+||++++.+ .||||||++. + |++|++.
T Consensus 89 ~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~~~-~lyPaV~l~~--~-g~~v~vN 160 (171)
T 2yyo_A 89 NGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPD-GLFPAVGMHS--L-GEEVRLH 160 (171)
T ss_dssp SSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSCSS-SCEEEEEECS--T-TEEEEEE
T ss_pred eCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecCCcCC-CEEEEEEEec--C-CCEEEEE
Confidence 98765 788899999999999999995 9999999999999999999755 5999999954 4 6677665
No 36
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.87 E-value=7.4e-22 Score=221.82 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=132.2
Q ss_pred EEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCC
Q psy15269 1060 VKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKS 1136 (1858)
Q Consensus 1060 I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~ 1136 (1858)
+.+.++.++..+|+..|.++++ ..++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~---~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLS---QGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSC---HHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHHHCCCC
Confidence 5677888999999999988875 389999999999999999999999999999999999 9999999999999999
Q ss_pred cEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1137 SLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1137 ~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
+||||||+++||+|+|+|++|||||+|.+++.|+||+ +| .+.+++|+++ .+...++.|++.++...+.++
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG-GGHHHHHHHHHHHSSCCEECC
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch-hHHHHHHHHHHHhcCcCeecC
Confidence 9999999999999999999999999999999999999 22 3389999998 899999999999998776655
No 37
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=211.31 Aligned_cols=149 Identities=19% Similarity=0.279 Sum_probs=135.4
Q ss_pred CcccEEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1056 SVHLVKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1056 ~~~~I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
...+|+|+|+.++..+ |+..|..+++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|..++++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~---~~~R~~~~~~f 80 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELT---VEQRASIIQRF 80 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCC---HHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHH
Confidence 3456999999998765 99999998874 78999999999999999999999999999999999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEEcCCC------CChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHH
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP------LSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLL 1199 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VINyDlP------~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l 1199 (1858)
++|+.+||||||+++||+|+|++++|||||+| .++++|+||+| | .+.+++|+++ .+...++.|++.+
T Consensus 81 ~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 81 RDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV-DELPSLMKIQDHF 159 (175)
T ss_dssp HTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG-GGHHHHHHHHHHH
T ss_pred HcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc-chHHHHHHHHHHh
Confidence 99999999999999999999999999999999 89999999992 2 2389999998 8889999999999
Q ss_pred hhcCCCCCC
Q psy15269 1200 EYSNKHVPT 1208 (1858)
Q Consensus 1200 ~~~~q~ip~ 1208 (1858)
+...++++.
T Consensus 160 ~~~~~~~~~ 168 (175)
T 2rb4_A 160 NSSIKQLNA 168 (175)
T ss_dssp TCCCEEECS
T ss_pred cCcccccCC
Confidence 887776664
No 38
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.86 E-value=1.6e-21 Score=210.03 Aligned_cols=148 Identities=22% Similarity=0.349 Sum_probs=134.6
Q ss_pred cEEEEEEECChhh-HHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1059 LVKQYLIRTPKSQ-KIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1059 ~I~Q~~~~v~~~~-Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
+|+|+|+.++..+ |+..|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~---~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLP---QQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHHHcC
Confidence 5889999998777 98888888753 89999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------CcceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------GHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------g~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
+.+||||||+++||+|+|++++|||||+|.++++|+||+| ..+.+++|+++ .+...++.+++.++...+++|.
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET-TTHHHHHHHHHHSSCCCEECCS
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcc-hHHHHHHHHHHHHccCccccCc
Confidence 9999999999999999999999999999999999999992 22389999998 8889999999999988888876
Q ss_pred Cc
Q psy15269 1209 HP 1210 (1858)
Q Consensus 1209 ~~ 1210 (1858)
..
T Consensus 159 ~~ 160 (165)
T 1fuk_A 159 DI 160 (165)
T ss_dssp CC
T ss_pred cH
Confidence 44
No 39
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=8.1e-22 Score=232.12 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=206.9
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYES 948 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~ 948 (1858)
+.++-|+|+|+.++-+.+..+...... +...+.||.....+...+.. .++++.||.+++. ......
T Consensus 59 ~liv~P~~~L~~q~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~ 126 (337)
T 2z0m_A 59 SLVVTPTRELTRQVASHIRDIGRYMDT-----------KVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVID 126 (337)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCC-----------cEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcc
Confidence 478999999999999888776655444 23456777765555555443 7789999999885 222223
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+++|||++ +.+.||... +..++..++..++.+++
T Consensus 127 ~~~~~~iViDEah~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------------------- 166 (337)
T 2z0m_A 127 LSSFEIVIIDEADL----------MFEMGFIDD----IKIILAQTSNRKITGLF-------------------------- 166 (337)
T ss_dssp GGGCSEEEEESHHH----------HHHTTCHHH----HHHHHHHCTTCSEEEEE--------------------------
T ss_pred hhhCcEEEEEChHH----------hhccccHHH----HHHHHhhCCcccEEEEE--------------------------
Confidence 33445567888876 788888888 88888877766666666
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHH-HHHHhhcCCcEEEEecChHHHHHHHHHHhhCCC
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIV-NLLSFLEGKRSLIFVKTYRDASRIISAVQDSNM 1107 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~-~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~ 1107 (1858)
|||+|..+.+....++.++..+... .....+.+.++.++...+.. ..+......++||||++++.++.+++.|+
T Consensus 167 SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~---- 241 (337)
T 2z0m_A 167 SATIPEEIRKVVKDFITNYEEIEAC-IGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD---- 241 (337)
T ss_dssp ESCCCHHHHHHHHHHSCSCEEEECS-GGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----
T ss_pred eCcCCHHHHHHHHHhcCCceeeecc-cccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----
Confidence 9999999999999999999887543 33445788887776543322 22222334889999999999999999887
Q ss_pred eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc------CcceEEE
Q psy15269 1108 MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA------GHKEAIA 1181 (1858)
Q Consensus 1108 ~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa------g~~~ait 1181 (1858)
.+..+||+++ +.+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+| ..+.++.
T Consensus 242 ~~~~~~~~~~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~ 318 (337)
T 2z0m_A 242 NAIELRGDLP---QSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAIT 318 (337)
T ss_dssp TEEEECTTSC---HHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEE
T ss_pred hhhhhcCCCC---HHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEE
Confidence 5789999999 999999999999999999999999999999999999999999999999999992 2227889
Q ss_pred EecCcccHHHHHHHHHHHhh
Q psy15269 1182 FYDPVADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1182 fvt~~~e~~~l~~Ie~~l~~ 1201 (1858)
|+. .|...++.|++.++.
T Consensus 319 ~~~--~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 319 FIL--NEYWLEKEVKKVSQK 336 (337)
T ss_dssp EES--SCHHHHHHHC-----
T ss_pred EEe--CcHHHHHHHHHHhcc
Confidence 988 677888888887754
No 40
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=215.29 Aligned_cols=150 Identities=27% Similarity=0.437 Sum_probs=124.4
Q ss_pred CCcccEEEEEEECChhhHHHHHHHhhcC----CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLEG----KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1055 ~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~----~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
....+|+|+|+.++..+|+..|+++++. .++||||+|++.++.+++.|+..|+.+..+||+|+ +.+|.+++++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~---~~~r~~~~~~ 91 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRS---QRDREEALHQ 91 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC-----------CHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCC---HHHHHHHHHH
Confidence 3455799999999999999999988853 68999999999999999999999999999999999 9999999999
Q ss_pred HhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCC
Q psy15269 1131 FNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNK 1204 (1858)
Q Consensus 1131 Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q 1204 (1858)
|++|+.+||||||+++||+|+|++++|||||+|+++++|+||+ .| .+.+++|+++ .+...++.+++.++...+
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~ 170 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQ 170 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG-GGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch-hhHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999 22 3389999998 888999999999999988
Q ss_pred CCCC
Q psy15269 1205 HVPT 1208 (1858)
Q Consensus 1205 ~ip~ 1208 (1858)
++|+
T Consensus 171 ~~~~ 174 (185)
T 2jgn_A 171 EVPS 174 (185)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 8886
No 41
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=2.1e-21 Score=229.32 Aligned_cols=146 Identities=17% Similarity=0.264 Sum_probs=133.8
Q ss_pred cEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCC
Q psy15269 1059 LVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGK 1135 (1858)
Q Consensus 1059 ~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~ 1135 (1858)
.++|+++.++..+|+..|.++++ ..++||||+|++.++.+++.|++.|+.+..+||+|+ |.+|..++++|++|+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~---~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMS---QGERERVMGAFRQGE 78 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCC---THHHHHHHHHHHHTS
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCC---HHHHHHHHHHhhcCC
Confidence 36899999999999999998876 389999999999999999999999999999999999 999999999999999
Q ss_pred CcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-----cC-cceEEEEecCcccHHHHHHHHHHHhhcCCCCCC
Q psy15269 1136 SSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT 1208 (1858)
Q Consensus 1136 ~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~ 1208 (1858)
.+||||||+++||||+|+|++|||||+|.+++.|+||+ +| .+.+++|+++ .+...++.|++.++.....++.
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~-~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECS-STHHHHHHHHHHHTCCCEECCC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeCh-HHHHHHHHHHHHhCCcceEeCC
Confidence 99999999999999999999999999999999999999 22 2389999998 8999999999999987766553
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.85 E-value=1.4e-21 Score=252.19 Aligned_cols=276 Identities=9% Similarity=-0.012 Sum_probs=192.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-c----cC-
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-L----MS- 943 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-l----~~- 943 (1858)
.+.++.|+|+||.++...++.+.....+ +..++.||+. .+.+......+++++||+++ + |.
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~lGL-----------sv~~i~gg~~--~~~r~~~y~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFLGL-----------QVGVILATMT--PDERRVAYNADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTC-----------CEEECCTTCC--HHHHHHHHHSSEEEEEHHHHHHHHHHHTT
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCC-----------eEEEEeCCCC--HHHHHHhcCCCEEEECchHhhHHHHHhhh
Confidence 4789999999999999998888777666 4477899976 55566666889999999998 3 33
Q ss_pred ---ccccccccccceeecccchhhhhhHHhhhhh-h---------------cCCCchhhHHHHHHHHHhH---------H
Q psy15269 944 ---PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQ-Q---------------TALSPREKTVLEQIFSVVN---------K 995 (1858)
Q Consensus 944 ---~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~-~---------------mGF~~~~~esL~~Il~~Lp---------k 995 (1858)
.+.........+|+||||+ |+ + |||.++ +..|++.++ +
T Consensus 221 ~~~~~~l~lr~l~~lIVDEaDs----------mLiDeartPLiiSg~~~~~~~~y~~----i~~iv~~L~~~~dy~vDek 286 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIVDEVDS----------ILIDEARTPLIISGPADGASNWYTE----FARLAPLMEKDVHYEVDLR 286 (922)
T ss_dssp CSSGGGCCCCCCCEEEETTHHH----------HHTTGGGSCEEEEEECCCCHHHHHH----HHHHHHHSCBTTTEEEETT
T ss_pred hccHhhhccCCCCEEEEeChHH----------HHHhcCccceeecCCCCcchhHHHH----HHHHHHhCcccccceeccC
Confidence 2234445567788999988 55 4 456667 999999997 6
Q ss_pred HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHH-----HHHhcC-C-------CEEEEEc---------
Q psy15269 996 FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEE-----SNIEVE-D-------PIMKLVK--------- 1053 (1858)
Q Consensus 996 ~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~l-----a~~~L~-d-------pv~I~v~--------- 1053 (1858)
.||++|.. .+...-.........+|||+|+.+..+ |..+++ | +..+.|.
T Consensus 287 ~rqv~Lte---------~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~g 357 (922)
T 1nkt_A 287 KRTVGVHE---------KGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIG 357 (922)
T ss_dssp TTEEEECH---------HHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTT
T ss_pred cceEEecH---------hHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCC
Confidence 67776210 000000000000113366655322221 222221 1 1111111
Q ss_pred ------------------------------------------------------------------cCCccc--EE-EEE
Q psy15269 1054 ------------------------------------------------------------------PSSVHL--VK-QYL 1064 (1858)
Q Consensus 1054 ------------------------------------------------------------------~~~~~~--I~-Q~~ 1064 (1858)
+..... +. +.+
T Consensus 358 rr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~ 437 (922)
T 1nkt_A 358 RRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDL 437 (922)
T ss_dssp CCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCE
T ss_pred ccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcE
Confidence 000011 11 124
Q ss_pred EECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEE
Q psy15269 1065 IRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLV 1139 (1858)
Q Consensus 1065 ~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~IL 1139 (1858)
+.+...+|...++..+. +.++||||+|++.++.|++.|++.|+++..|||++. +++|..+.+.|+.| .|+
T Consensus 438 v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~---~rEa~iia~agr~G--~Vt 512 (922)
T 1nkt_A 438 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH---EQEATIIAVAGRRG--GVT 512 (922)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH---HHHHHHHHTTTSTT--CEE
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh---HHHHHHHHhcCCCC--eEE
Confidence 56778889998888763 257999999999999999999999999999999987 88888888889888 699
Q ss_pred EeccccccCCCCCCc----------------------------------------------------ceEEEcCCCCChh
Q psy15269 1140 IMTLSDFIGNDFTNV----------------------------------------------------EQVIIYNLPLSIN 1167 (1858)
Q Consensus 1140 VATDVAARGLDIp~V----------------------------------------------------~~VINyDlP~~~e 1167 (1858)
||||+|+||+||+.+ .||||||+|.+.+
T Consensus 513 IATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~r 592 (922)
T 1nkt_A 513 VATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRR 592 (922)
T ss_dssp EEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHH
T ss_pred EecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHH
Confidence 999999999999975 5999999999999
Q ss_pred hhhhhc---cCcc---eEEEEecCc
Q psy15269 1168 HYVFQI---AGHK---EAIAFYDPV 1186 (1858)
Q Consensus 1168 ~YIHRI---ag~~---~aitfvt~~ 1186 (1858)
.|+||+ |+.| .+++|++..
T Consensus 593 iy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 593 IDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHHHhcccccCCCCeeEEEEechh
Confidence 999999 3333 899999973
No 43
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=7.2e-22 Score=249.09 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=200.0
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+|+.|+-+.+..+.....+.. ....++.. ........++++.||..++. ..++.
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~-----------~~~~~~~~----~~~~~~~~~Ivv~T~~~l~~~l~~~~~ 255 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYTEVKT-----------AFGIKDSV----PKGAKIDAQIVIGTPGTVMDLMKRRQL 255 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTSSCCE-----------EC--------------CCCCSEEEECHHHHHHHHHTTCS
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCccCeeE-----------EEEeCCcc----cccccCCCCEEEECHHHHHHHHHcCCc
Confidence 468999999999999888777665544422 12222211 11112246688999998875 22333
Q ss_pred ccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
.......+|+||+.+ +.+ .+|... +..|++.+++..|.+++
T Consensus 256 ~~~~~~lIIiDEaH~----------~~~~~~~~~~----~~~i~~~~~~~~~~i~l------------------------ 297 (508)
T 3fho_A 256 DARDIKVFVLDEADN----------MLDQQGLGDQ----SMRIKHLLPRNTQIVLF------------------------ 297 (508)
T ss_dssp CCTTCCEEEECCHHH----------HTTC--CHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cccCCCEEEEechhh----------hcccCCcHHH----HHHHHHhCCcCCeEEEE------------------------
Confidence 344456677999977 444 677777 88888888877777777
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccCCcc--cEEEEEEECC-hhhHHHHHHHhhc---CCcEEEEecChHHHHHHHH
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPSSVH--LVKQYLIRTP-KSQKIVNLLSFLE---GKRSLIFVKTYRDASRIIS 1100 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~--~I~Q~~~~v~-~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~ 1100 (1858)
|||+++.++++++.++.++..+.+...... .+.+.+..+. ...|...+..++. ..++||||++++.++.+++
T Consensus 298 --SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~ 375 (508)
T 3fho_A 298 --SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIAR 375 (508)
T ss_dssp --ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHH
T ss_pred --eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHH
Confidence 999999999999999999988876544332 3666776664 4556666766665 3899999999999999999
Q ss_pred HHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCC------CChhhhhhhcc
Q psy15269 1101 AVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLP------LSINHYVFQIA 1174 (1858)
Q Consensus 1101 ~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP------~~~e~YIHRIa 1174 (1858)
.|.+.++.+..+||+++ +.+|..++++|++|+.+|||||+++++|+|+|++++||+||+| .++..|+||+|
T Consensus 376 ~L~~~~~~v~~~hg~~~---~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~G 452 (508)
T 3fho_A 376 RMTADGHTVACLTGNLE---GAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG 452 (508)
T ss_dssp HHTTTTCCCCEEC--------CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTS
T ss_pred HHHhCCCcEEEEeCCCC---HHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhh
Confidence 99999999999999999 9999999999999999999999999999999999999999999 88999999992
Q ss_pred C------cceEEEEecCcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1175 G------HKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1175 g------~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
+ .+.++.|+.+.++...++.++++++...++++..
T Consensus 453 RagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 453 RTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp CCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred hcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 2 2379999987678888999999999888887753
No 44
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.84 E-value=1e-20 Score=242.67 Aligned_cols=267 Identities=13% Similarity=0.090 Sum_probs=194.9
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhh------hhcccccccccccccC
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDID------KFVRDMRHVSNNILMS 943 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~------~~v~~l~~t~~~ll~~ 943 (1858)
.+.++.|.|+|+.+.-+.+..+ | ++...+.|+.....+...+. ...++++.||.++...
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~--g-------------i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~ 150 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQL--G-------------ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKS 150 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH--T-------------CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSC
T ss_pred cEEEEeCHHHHHHHHHHHHHhc--C-------------CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhcc
Confidence 3588999999999887766554 1 23455666665433322221 2466889999877532
Q ss_pred c-------cccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHH--HHHHhHHHHHHHhhhccCCCCccc
Q psy15269 944 P-------NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQ--IFSVVNKFRAELLSAVSNAPSFDD 1012 (1858)
Q Consensus 944 ~-------~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~--Il~~Lpk~RQtLLf~~~~~~s~~~ 1012 (1858)
. ..........+++|||+. +.+.| |.++ +.. ++......++.+++
T Consensus 151 ~~~~~~l~~~~~~~~i~~iViDEAH~----------is~~g~dfr~~----~~~l~~l~~~~~~~~ii~l---------- 206 (591)
T 2v1x_A 151 KMFMSRLEKAYEARRFTRIAVDEVHC----------CSQWGHDFRPD----YKALGILKRQFPNASLIGL---------- 206 (591)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETGGG----------GSTTCTTCCGG----GGGGGHHHHHCTTSEEEEE----------
T ss_pred HHHHHHHHhhhhccCCcEEEEECccc----------ccccccccHHH----HHHHHHHHHhCCCCcEEEE----------
Confidence 1 111223445577888877 88888 8888 433 22222223344555
Q ss_pred ccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEE-ccCCcccEEEEEEECC--hhhHHHHHHHhhcC----CcE
Q psy15269 1013 NNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLV-KPSSVHLVKQYLIRTP--KSQKIVNLLSFLEG----KRS 1085 (1858)
Q Consensus 1013 ~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v-~~~~~~~I~Q~~~~v~--~~~Kl~~Ll~lL~~----~k~ 1085 (1858)
|||+++.+.+.+..++..+..+.+ ......++...+...+ ..+++..|++++.. .++
T Consensus 207 ----------------SAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (591)
T 2v1x_A 207 ----------------TATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSG 270 (591)
T ss_dssp ----------------ESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEE
T ss_pred ----------------ecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCe
Confidence 999999999888888865433322 2233445655554443 35677888888753 789
Q ss_pred EEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCC
Q psy15269 1086 LIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLS 1165 (1858)
Q Consensus 1086 IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~ 1165 (1858)
||||+|++.++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|||+|+|++|||||+|.+
T Consensus 271 IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~---~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLE---PEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSS
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEecCCCC---HHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCC
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcc---C---cceEEEEecCcccHHHHHHH
Q psy15269 1166 INHYVFQIA---G---HKEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1166 ~e~YIHRIa---g---~~~aitfvt~~~e~~~l~~I 1195 (1858)
++.|+||+| + .+.++.|+++ .|...++.+
T Consensus 348 ~~~y~Qr~GRaGR~G~~g~~i~l~~~-~D~~~~~~~ 382 (591)
T 2v1x_A 348 MENYYQESGRAGRDDMKADCILYYGF-GDIFRISSM 382 (591)
T ss_dssp HHHHHHHHTTSCTTSSCEEEEEEECH-HHHHHHHHH
T ss_pred HHHHHHHhccCCcCCCCceEEEEECh-HHHHHHHHH
Confidence 999999992 2 2279999998 665544443
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=2.3e-21 Score=263.04 Aligned_cols=266 Identities=11% Similarity=0.080 Sum_probs=197.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh---hhhhhhhcccccccccccccCccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA---IIDIDKFVRDMRHVSNNILMSPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q---~~dl~~~v~~l~~t~~~ll~~~~~ 946 (1858)
.++++-|+|+||.|+-..+..+.....+.. -.+...+.||.....+ ...+.+ .++++.||+++++....
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~~i~~-------~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKAGVGT-------ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTTCCSG-------GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCCCc-------cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH
Confidence 468999999999999999888776654421 1245678899887774 334445 88999999999974433
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH-----------HHHHHHhhhccCCCCcccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN-----------KFRAELLSAVSNAPSFDDNNV 1015 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp-----------k~RQtLLf~~~~~~s~~~~~~ 1015 (1858)
......+|+|||++ |.+ |.++ ++.|+..+. +.+|++++
T Consensus 173 --L~~l~~lViDEah~----------~l~--~~~~----~~~i~~~lgf~~~~~~~~~~~~~q~~l~------------- 221 (1054)
T 1gku_B 173 --LGHFDFIFVDDVDA----------ILK--ASKN----VDKLLHLLGFHYDLKTKSWVGEARGCLM------------- 221 (1054)
T ss_dssp --SCCCSEEEESCHHH----------HHT--STHH----HHHHHHHTTEEEETTTTEEEECCSSEEE-------------
T ss_pred --hccCCEEEEeChhh----------hhh--cccc----HHHHHHHhCcchhhhhhhcccCCceEEE-------------
Confidence 34566778999988 665 4445 666666542 33444454
Q ss_pred cccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCC--cccEEEEEEECChhhHHHHHHHhhcC--CcEEEEecC
Q psy15269 1016 SMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSS--VHLVKQYLIRTPKSQKIVNLLSFLEG--KRSLIFVKT 1091 (1858)
Q Consensus 1016 s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~--~~~I~Q~~~~v~~~~Kl~~Ll~lL~~--~k~IIFvnT 1091 (1858)
|||.+.. +++++.++.++..+.+.... ...+.|.++. .+|...|..+++. .++||||+|
T Consensus 222 -------------SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~---~~k~~~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 222 -------------VSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN---DESISTLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp -------------ECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES---CCCTTTTHHHHTTSCSCEEEEESS
T ss_pred -------------EecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec---hhHHHHHHHHHhhcCCCEEEEEcC
Confidence 8888877 66666666666555554332 3347887774 3444445555543 789999999
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEe----ccccccCCCCCCc-ceEEEcCCC---
Q psy15269 1092 YRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIM----TLSDFIGNDFTNV-EQVIIYNLP--- 1163 (1858)
Q Consensus 1092 k~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVA----TDVAARGLDIp~V-~~VINyDlP--- 1163 (1858)
++.|+.+++.|++. +++..+||++. +++++|++|+.+|||| ||+++||||+|+| ++|||||+|
T Consensus 285 ~~~a~~l~~~L~~~-~~v~~lhg~~~--------~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~ 355 (1054)
T 1gku_B 285 GEEAEEIYESLKNK-FRIGIVTATKK--------GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR 355 (1054)
T ss_dssp HHHHHHHHHTTTTS-SCEEECTTSSS--------HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEE
T ss_pred HHHHHHHHHHHhhc-cCeeEEeccHH--------HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccc
Confidence 99999999999988 99999999984 6788999999999999 9999999999996 999999999
Q ss_pred --------------------------------------------------------------------CChhhhhhhcc-
Q psy15269 1164 --------------------------------------------------------------------LSINHYVFQIA- 1174 (1858)
Q Consensus 1164 --------------------------------------------------------------------~~~e~YIHRIa- 1174 (1858)
.+.++|+||+|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GR 435 (1054)
T 1gku_B 356 VTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGR 435 (1054)
T ss_dssp EECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHT
T ss_pred ccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhch
Confidence 78999999992
Q ss_pred -Cc---c---eEEEEecCcccHHHHHHHHHHHhh
Q psy15269 1175 -GH---K---EAIAFYDPVADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1175 -g~---~---~aitfvt~~~e~~~l~~Ie~~l~~ 1201 (1858)
|+ + .+++|+.. +|...++.|++.++.
T Consensus 436 agR~g~~g~~~g~~~~~~-~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 436 TSRLFAGGLTKGASFLLE-DDSELLSAFIERAKL 468 (1054)
T ss_dssp TCCEETTEECCEEEEEEC-SCHHHHHHHHHHHHT
T ss_pred hhhccCCCCceEEEEEEe-cCHHHHHHHHHHHhh
Confidence 22 2 38999988 788999999999986
No 46
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.82 E-value=7.3e-20 Score=206.04 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=126.9
Q ss_pred eeEecCCCceE-EEEecCCe-EEEec--CCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQ-SLIHG--PGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DY 1480 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~-~~~~~--~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~ 1480 (1858)
.++|||++++. +++++|+. ++... ..++..+||+++|++|.||||++|.....+.+ ..||||+..+. ..
T Consensus 32 ~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~-w~vGV~~~~~~r~~~g~~~ 110 (212)
T 2jk9_A 32 LHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTH-AVVGVATADAPLHSVGYTT 110 (212)
T ss_dssp HTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTC-CEEEEECTTSCCEEESSCC
T ss_pred ccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCCc-EEEEEEcCCccccccCccc
Confidence 36999999998 99998875 45432 23456799999999999999999875443444 67999998876 24
Q ss_pred CCCCCCceeEEEeCCceeeeCCCCCc---------cCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCcee
Q psy15269 1481 NHRTTGDMWLYRAYSGNVYHSGEQTT---------MLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLY 1551 (1858)
Q Consensus 1481 ~~~~~~~~W~y~~~~g~~~h~~~~~~---------~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~ly 1551 (1858)
..|.+..+|+|+.++|.++|++.... +.+.|.+||+|||.||+++|+|+|++||+++|+||+++. +++||
T Consensus 111 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~~-~~~l~ 189 (212)
T 2jk9_A 111 LVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK-GKKLY 189 (212)
T ss_dssp CTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT-TCCBE
T ss_pred ccccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccCC-CCEEe
Confidence 56889999999998999999887521 345678999999999999999999999999999999996 45799
Q ss_pred EEEEEeecCCCCCeEEEEEeeec
Q psy15269 1552 PIVLFYSTNANGEKVKITDMTVC 1574 (1858)
Q Consensus 1552 P~Vs~y~~~~~~~~v~~~~~~~~ 1574 (1858)
|+|+++. . +..|+|+-+-.+
T Consensus 190 P~f~l~~--g-~~~v~l~~~~~~ 209 (212)
T 2jk9_A 190 PVVSAVW--G-HCEIRMRYLNGL 209 (212)
T ss_dssp EEEEECC--T-TCEEEEEEEEEE
T ss_pred eEEEEEc--C-CcEEEEEECCCc
Confidence 9999831 1 335777766655
No 47
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.82 E-value=1.6e-21 Score=253.93 Aligned_cols=335 Identities=11% Similarity=0.055 Sum_probs=184.1
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccc
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSL 912 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~ 912 (1858)
+...-+. +-.++|++..+.+... .....+.++-|+|+|+.|.-..+..++....+ +...
T Consensus 36 ~TGsGKT-l~~~~~i~~~l~~~~~---------~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~-----------~v~~ 94 (696)
T 2ykg_A 36 PTGCGKT-FVSLLICEHHLKKFPQ---------GQKGKVVFFANQIPVYEQNKSVFSKYFERHGY-----------RVTG 94 (696)
T ss_dssp CTTSSHH-HHHHHHHHHHHHHSCT---------TCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEE
T ss_pred CCCchHH-HHHHHHHHHHHHhCcc---------CCCCeEEEEECCHHHHHHHHHHHHHHhccCCc-----------eEEE
Confidence 4334442 3456677776654321 11234689999999999998888777754433 4466
Q ss_pred cccccCCchhhhhhhhhcccccccccccccC--cccc-ccccccceeecccchhhhhhHHhhh---hhhcCC--------
Q psy15269 913 LSAGLEPSTAIIDIDKFVRDMRHVSNNILMS--PNYE-SDVNKYSVLLKYIPQQYKNLVYSYL---IQQTAL-------- 978 (1858)
Q Consensus 913 ~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~--~~~~-~~~~~~~~lLd~a~r~y~~~~~A~l---L~~mGF-------- 978 (1858)
+.||.....+...+....++++.||+++++. .+.. .......+|+|||++--..-.+... +++++|
T Consensus 95 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 174 (696)
T 2ykg_A 95 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP 174 (696)
T ss_dssp ECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCC
T ss_pred EeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCC
Confidence 7899887777777777889999999999862 2222 3455677889999982222222222 222222
Q ss_pred -------------CchhhHHHHHHHHHhHHHHHHHhhhccCCCCcc-------cccccccccccccccCCCCCCc---Hh
Q psy15269 979 -------------SPREKTVLEQIFSVVNKFRAELLSAVSNAPSFD-------DNNVSMGVTSTQHNSTDSLFSW---GD 1035 (1858)
Q Consensus 979 -------------~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~-------~~~~s~~~~~~~~~~~eSAT~p---~~ 1035 (1858)
..+..+.++.|++.++...-.... ... .... ................+++|++ ..
T Consensus 175 ~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~-~~~-~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~ 252 (696)
T 2ykg_A 175 QVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIA-TVK-HNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 252 (696)
T ss_dssp EEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEE-CCC-TTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred eEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEe-ecc-cchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHH
Confidence 111123455555554321100000 000 0000 0000000001223334566777 67
Q ss_pred HHHHHHHhcCCCEEEEEcc-------------------------------------------------------------
Q psy15269 1036 IEEESNIEVEDPIMKLVKP------------------------------------------------------------- 1054 (1858)
Q Consensus 1036 I~~la~~~L~dpv~I~v~~------------------------------------------------------------- 1054 (1858)
++++++.++++|..+....
T Consensus 253 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~ 332 (696)
T 2ykg_A 253 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 332 (696)
T ss_dssp HHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHH
Confidence 8888888888754331100
Q ss_pred ---------------CCcccEEEEEEEC----------------ChhhHHHHHHHhhc-------CCcEEEEecChHHHH
Q psy15269 1055 ---------------SSVHLVKQYLIRT----------------PKSQKIVNLLSFLE-------GKRSLIFVKTYRDAS 1096 (1858)
Q Consensus 1055 ---------------~~~~~I~Q~~~~v----------------~~~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad 1096 (1858)
.....+.|.+... ....|+..|.+++. ..++||||++++.++
T Consensus 333 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~ 412 (696)
T 2ykg_A 333 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 412 (696)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHH
Confidence 0001111111100 13456777766653 378999999999999
Q ss_pred HHHHHHhhCC----CeEEEEe--------cCCCCccHHHHHHHHHHHhc-CCCcEEEeccccccCCCCCCcceEEEcCCC
Q psy15269 1097 RIISAVQDSN----MMTIPMS--------NNGTSWSHVECLELLNLFNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLP 1163 (1858)
Q Consensus 1097 ~L~~~L~~~g----~~~~~LH--------G~ms~~~Q~eR~~~L~~Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP 1163 (1858)
.+++.|++.| +++..+| |+|+ +.+|.+++++|++ |+.+|||||++++||||+|+|++|||||+|
T Consensus 413 ~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~---~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p 489 (696)
T 2ykg_A 413 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT---LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 489 (696)
T ss_dssp HHHHHHHHCTTCCSCCEEC--------------------------------CCSCSEEEESSCCC---CCCSEEEEESCC
T ss_pred HHHHHHHhCCCccccceeEEEccCCCccccCCC---HHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCC
Confidence 9999999988 8999995 5898 9999999999998 999999999999999999999999999999
Q ss_pred CChhhhhhhccCcc-----eEEEEecCcccHHHHHHH
Q psy15269 1164 LSINHYVFQIAGHK-----EAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1164 ~~~e~YIHRIag~~-----~aitfvt~~~e~~~l~~I 1195 (1858)
.++++|+||+|+ + .++.+++. .+......+
T Consensus 490 ~s~~~~~Qr~GR-GR~~~g~~~~l~~~-~~~~~~~~~ 524 (696)
T 2ykg_A 490 GNVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQI 524 (696)
T ss_dssp --CCCC----------CCCEEEEEESC-HHHHHHHHH
T ss_pred CCHHHHHHhhcc-CcCCCceEEEEecC-CCHHHHHHH
Confidence 999999999955 3 57777776 555444444
No 48
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.81 E-value=1.9e-20 Score=212.84 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=129.8
Q ss_pred eeEecCCCceE-EEEecCCeEEEecC--CCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc------cCC
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGP--GTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR------DYN 1481 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~------~~~ 1481 (1858)
.++|||++++. +++++|+.+++... .++..+||+++|++|.||||+++....++.+ ..||||+..+. ...
T Consensus 40 ~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~-w~vGV~~~s~~~~r~~~~~~ 118 (226)
T 2afj_A 40 HHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTH-AVVGVATALAPLQADHYAAL 118 (226)
T ss_dssp HHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCC-CEEEEEESSCCCSSCSSSCC
T ss_pred ccEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCCC-EEEEecCCcccccccccccc
Confidence 46899999998 89999999888432 1234899999999999999999876543333 78999998883 345
Q ss_pred CCCCCceeEEEeCCceeeeCCCCC--ccC------CCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQT--TML------PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPI 1553 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~~--~~~------~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~ 1553 (1858)
.|.+..+|+|..++|.++|+++.. ..+ +.+.+||+|||.||+++|+|+|++||+++|+||+++. +++|||+
T Consensus 119 ~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~-~~~L~P~ 197 (226)
T 2afj_A 119 LGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK-GRTLYPS 197 (226)
T ss_dssp CCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHH-HHCCEEE
T ss_pred ccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEcCC-CCEEEEE
Confidence 688999999998888888998752 223 3578999999999999999999999999999999985 4469999
Q ss_pred EEEeecCCCCCeEEEEEeeeccCC
Q psy15269 1554 VLFYSTNANGEKVKITDMTVCETP 1577 (1858)
Q Consensus 1554 Vs~y~~~~~~~~v~~~~~~~~~~p 1577 (1858)
|+++. . +..|.|+.+..+.++
T Consensus 198 f~l~~--g-~~~v~l~~~~g~~~~ 218 (226)
T 2afj_A 198 VSAVW--G-QCQVRIRYMGERRVE 218 (226)
T ss_dssp EEECC--T-TSCCEEEEESCCCCS
T ss_pred EEccc--C-CCEEEEEEcCCCChh
Confidence 99832 2 336888887777443
No 49
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.80 E-value=1.2e-19 Score=229.74 Aligned_cols=263 Identities=14% Similarity=0.189 Sum_probs=185.5
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhh---hhhh-hcccccccccccccCcc-
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAII---DIDK-FVRDMRHVSNNILMSPN- 945 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~---dl~~-~v~~l~~t~~~ll~~~~- 945 (1858)
+.++.|.|+|+.+.-+.+..+ | ++...+.|+.....+.. ++.. ..++++.||.+++...-
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~--g-------------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~ 132 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN--G-------------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL 132 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT--T-------------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH
T ss_pred EEEECChHHHHHHHHHHHHHc--C-------------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH
Confidence 478899999999887766543 1 22334445544332222 2222 26788999999874221
Q ss_pred -ccccccccceeecccchhhhhhHHhhhhhhcC--CCchhhHHHHHHH---HHhHHHHHHHhhhccCCCCcccccccccc
Q psy15269 946 -YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA--LSPREKTVLEQIF---SVVNKFRAELLSAVSNAPSFDDNNVSMGV 1019 (1858)
Q Consensus 946 -~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG--F~~~~~esL~~Il---~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~ 1019 (1858)
.........+++|||+. +.+.| |.++ ...|. +..| ..+.+.+
T Consensus 133 ~~l~~~~~~~vViDEaH~----------i~~~g~~fr~~----~~~l~~l~~~~~-~~~~i~l----------------- 180 (523)
T 1oyw_A 133 EHLAHWNPVLLAVDEAHC----------ISQWGHDFRPE----YAALGQLRQRFP-TLPFMAL----------------- 180 (523)
T ss_dssp HHHTTSCEEEEEESSGGG----------GCTTSSCCCHH----HHGGGGHHHHCT-TSCEEEE-----------------
T ss_pred HHHhhCCCCEEEEeCccc----------cCcCCCccHHH----HHHHHHHHHhCC-CCCEEEE-----------------
Confidence 11123445677888877 77877 6666 33321 1111 1223344
Q ss_pred cccccccCCCCCCcHhHHH-HHHHh-cCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhc---CCcEEEEecChHH
Q psy15269 1020 TSTQHNSTDSLFSWGDIEE-ESNIE-VEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRD 1094 (1858)
Q Consensus 1020 ~~~~~~~~eSAT~p~~I~~-la~~~-L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ 1094 (1858)
|||.+..+.+ +.+.+ +.+|..+ +......++...+ .++.++...+++++. ..++||||+|++.
T Consensus 181 ---------SAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~~l~~~v--~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~ 248 (523)
T 1oyw_A 181 ---------TATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPNIRYML--MEKFKPLDQLMRYVQEQRGKSGIIYCNSRAK 248 (523)
T ss_dssp ---------ESCCCHHHHHHHHHHHTCCSCEEE-ECCCCCTTEEEEE--EECSSHHHHHHHHHHHTTTCCEEEECSSHHH
T ss_pred ---------eCCCCHHHHHHHHHHhCCCCCeEE-eCCCCCCceEEEE--EeCCCHHHHHHHHHHhcCCCcEEEEeCCHHH
Confidence 8999988765 44333 4566543 3334444554333 344567777777775 3789999999999
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc-
Q psy15269 1095 ASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI- 1173 (1858)
Q Consensus 1095 ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI- 1173 (1858)
++.+++.|++.|+.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|||+|+|++|||||+|.+++.|+||+
T Consensus 249 ~e~l~~~L~~~g~~~~~~h~~l~---~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~G 325 (523)
T 1oyw_A 249 VEDTAARLQSKGISAAAYHAGLE---NNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETG 325 (523)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEecCCCC---HHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred -cC----cceEEEEecCcccHHHHHHHH
Q psy15269 1174 -AG----HKEAIAFYDPVADIGLASSLI 1196 (1858)
Q Consensus 1174 -ag----~~~aitfvt~~~e~~~l~~Ie 1196 (1858)
+| .+.++.|+++ .|...++.+.
T Consensus 326 RaGR~g~~~~~~l~~~~-~d~~~~~~~~ 352 (523)
T 1oyw_A 326 RAGRDGLPAEAMLFYDP-ADMAWLRRCL 352 (523)
T ss_dssp TSCTTSSCEEEEEEECH-HHHHHHHHHH
T ss_pred cccCCCCCceEEEEeCH-HHHHHHHHHH
Confidence 22 2279999998 6665554443
No 50
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.80 E-value=1.9e-20 Score=240.97 Aligned_cols=245 Identities=11% Similarity=0.051 Sum_probs=177.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCccc---
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNY--- 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~--- 946 (1858)
.++++.|+|+||.|+.+.+.+.. + +.+...+ ..+.||+++++....
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~~~----v----------------------~~~~~~l-----~~~~tp~~~i~~~t~~~l 265 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRGLP----I----------------------RYQTPAV-----KSDHTGREIVDLMCHATF 265 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTTSC----E----------------------EECCTTS-----SCCCCSSSCEEEEEHHHH
T ss_pred eEEEEcChHHHHHHHHHHhcCCc----e----------------------eEecccc-----eeccCCCceEEEEChHHH
Confidence 35889999999999998876321 0 0010001 125677777742111
Q ss_pred -------cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH-HHHHHHhhhccCCCCccccccccc
Q psy15269 947 -------ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN-KFRAELLSAVSNAPSFDDNNVSMG 1018 (1858)
Q Consensus 947 -------~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp-k~RQtLLf~~~~~~s~~~~~~s~~ 1018 (1858)
........+|+|||++ | +++|... +..|.+.++ +.+|++++
T Consensus 266 ~~~l~~~~~l~~~~~iViDEah~----------~-~~~~~~~----~~~i~~~l~~~~~q~il~---------------- 314 (618)
T 2whx_A 266 TTRLLSSTRVPNYNLIVMDEAHF----------T-DPCSVAA----RGYISTRVEMGEAAAIFM---------------- 314 (618)
T ss_dssp HHHHHHCSSCCCCSEEEEESTTC----------C-SHHHHHH----HHHHHHHHHHTSCEEEEE----------------
T ss_pred HHHHhccccccCCeEEEEECCCC----------C-CccHHHH----HHHHHHHhcccCccEEEE----------------
Confidence 1134556677999988 5 6777777 888888886 46788888
Q ss_pred ccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh-hhHHHHHHHhhcCCcEEEEecChHHHHH
Q psy15269 1019 VTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK-SQKIVNLLSFLEGKRSLIFVKTYRDASR 1097 (1858)
Q Consensus 1019 ~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~-~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~ 1097 (1858)
|||+|..+.++++ .+|..+.+...... .+ ...+..+.+ ...++||||+|++.|+.
T Consensus 315 ----------SAT~~~~~~~~~~---~~~~~~~v~~~~~~---------~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~ 370 (618)
T 2whx_A 315 ----------TATPPGSTDPFPQ---SNSPIEDIEREIPE---------RSWNTGFDWITD--YQGKTVWFVPSIKAGND 370 (618)
T ss_dssp ----------CSSCTTCCCSSCC---CSSCEEEEECCCCS---------SCCSSSCHHHHH--CCSCEEEECSSHHHHHH
T ss_pred ----------ECCCchhhhhhhc---cCCceeeecccCCH---------HHHHHHHHHHHh--CCCCEEEEECChhHHHH
Confidence 9999988765443 35555544322100 01 111122222 24789999999999999
Q ss_pred HHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceE--------------------
Q psy15269 1098 IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQV-------------------- 1157 (1858)
Q Consensus 1098 L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~V-------------------- 1157 (1858)
+++.|++.|+++..+||+ +|.+++++|++|+.+||||||+++|||||+ |++|
T Consensus 371 l~~~L~~~g~~v~~lhg~-------~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~ 442 (618)
T 2whx_A 371 IANCLRKSGKRVIQLSRK-------TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVI 442 (618)
T ss_dssp HHHHHHHTTCCEEEECTT-------THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEE
T ss_pred HHHHHHHcCCcEEEEChH-------HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceE
Confidence 999999999999999984 366799999999999999999999999997 9998
Q ss_pred EEcCCCCChhhhhhhc-----cC--cceEEEEec---CcccHHHHHHHHHHHhhcCCCCCCC
Q psy15269 1158 IIYNLPLSINHYVFQI-----AG--HKEAIAFYD---PVADIGLASSLIKLLEYSNKHVPTH 1209 (1858)
Q Consensus 1158 INyDlP~~~e~YIHRI-----ag--~~~aitfvt---~~~e~~~l~~Ie~~l~~~~q~ip~~ 1209 (1858)
||||+|.+.++|+||+ +| .+.+++|++ + +|...++.|++.+......+++.
T Consensus 443 i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~-~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 443 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLK-NDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCC-CCTTCHHHHHHHHHHTTCCCTTC
T ss_pred EcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCch-hhHHHHHHHHhHhccccccCCcc
Confidence 8899999999999999 22 337899998 5 78888999999887766666543
No 51
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.80 E-value=1e-19 Score=228.73 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=81.3
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhCC------------CeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDSN------------MMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~g------------~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
..|+..|.+++. ..++||||++++.++.+++.|++.+ .....+||+|+ +.+|.+++++
T Consensus 370 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~R~~~~~~ 446 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMT---LPAQKCVLEA 446 (555)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccC---HHHHHHHHHH
Confidence 346666666663 2899999999999999999999864 34455566998 9999999999
Q ss_pred Hhc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--cc--eEEEEecCcccHHHHHHH
Q psy15269 1131 FNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--HK--EAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1131 Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~~--~aitfvt~~~e~~~l~~I 1195 (1858)
|++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ .. .++.|+++ .+......+
T Consensus 447 F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~-~~~~~~~~~ 515 (555)
T 3tbk_A 447 FRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSS-ADVIEKEKA 515 (555)
T ss_dssp -----CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEEESC-HHHHHHHHH
T ss_pred HhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEEEEEcC-CCHHHHHHH
Confidence 999 999999999999999999999999999999999999999943 22 79999987 554444444
No 52
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.67 E-value=5.8e-21 Score=206.84 Aligned_cols=143 Identities=19% Similarity=0.311 Sum_probs=130.5
Q ss_pred cEEEEEEECCh-hhHHHHHHHhhcC---CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcC
Q psy15269 1059 LVKQYLIRTPK-SQKIVNLLSFLEG---KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1059 ~I~Q~~~~v~~-~~Kl~~Ll~lL~~---~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
+|+|+|+.++. .+|+..|.++++. .++||||+|++.++.+++.|++.|+.+..+||+|+ +.+|..++++|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~---~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV---QGKRNEAIKRLTEG 79 (170)
Confidence 57899999988 8899999888875 68999999999999999999999999999999999 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhcc-----C-cceEEEEecCcccHHHHHHHHHHHhhcCCC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIA-----G-HKEAIAFYDPVADIGLASSLIKLLEYSNKH 1205 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIa-----g-~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ 1205 (1858)
+.+||||||+++||+|+|++++|||||+|.++++|+||+| | .+.+++|+++ .+...++.+++.++...++
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 9999999999999999999999999999999999999992 2 2378999998 7888999999988776554
No 53
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.79 E-value=1.3e-19 Score=228.49 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=62.3
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhC------------CCeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDS------------NMMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~------------g~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
..|+..|.+++. ..++||||++++.++.+++.|++. |.....+||+|+ +.+|.+++++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~R~~~~~~ 447 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT---LPSQKGVLDA 447 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccC---HHHHHHHHHH
Confidence 446666666663 279999999999999999999876 566667788898 9999999999
Q ss_pred Hhc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--c--ceEEEEecC
Q psy15269 1131 FNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--H--KEAIAFYDP 1185 (1858)
Q Consensus 1131 Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~--~~aitfvt~ 1185 (1858)
|++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ . +.++.|+++
T Consensus 448 F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~ 507 (556)
T 4a2p_A 448 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 507 (556)
T ss_dssp ------CCEEEEEC-----------CEEEEETCCSCHHHHHHC--------CCEEEEESC
T ss_pred hcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEEEEeC
Confidence 999 999999999999999999999999999999999999999954 2 268899987
No 54
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.4e-19 Score=242.21 Aligned_cols=270 Identities=10% Similarity=-0.001 Sum_probs=199.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.|+|+||.|+-+.+..+.. +-.++.|+.... ...++++.||+++++ ..+..
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~---------------~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~ 286 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG---------------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSE 286 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS---------------SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSS
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC---------------CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCcc
Confidence 468999999999999888766443 234567776543 346789999999885 22223
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+|+|||++ |.+++|... ++.|+..+++.+|.+++
T Consensus 287 ~l~~l~lVVIDEaH~----------l~d~~rg~~----~e~ii~~l~~~~qvl~l------------------------- 327 (1108)
T 3l9o_A 287 VMREVAWVIFDEVHY----------MRDKERGVV----WEETIILLPDKVRYVFL------------------------- 327 (1108)
T ss_dssp HHHHEEEEEEETGGG----------TTSHHHHHH----HHHHHHHSCTTSEEEEE-------------------------
T ss_pred ccccCCEEEEhhhhh----------ccccchHHH----HHHHHHhcCCCceEEEE-------------------------
Confidence 344566778899888 888888777 99999999988888888
Q ss_pred CCCCCcHh--HHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh------------------------------------
Q psy15269 1028 DSLFSWGD--IEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK------------------------------------ 1069 (1858)
Q Consensus 1028 eSAT~p~~--I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~------------------------------------ 1069 (1858)
|||+|.. +.+.......+|+.+.........++++++....
T Consensus 328 -SATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1108)
T 3l9o_A 328 -SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 406 (1108)
T ss_dssp -ECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------
T ss_pred -cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc
Confidence 9998865 5577777888888887765555556666543210
Q ss_pred -------------------hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCe-------------------
Q psy15269 1070 -------------------SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMM------------------- 1108 (1858)
Q Consensus 1070 -------------------~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~------------------- 1108 (1858)
..++..++..+. ..++||||++++.|+.++..|...++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 486 (1108)
T 3l9o_A 407 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 486 (1108)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 233444444443 268999999999999999999764443
Q ss_pred --------------------EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCCh--
Q psy15269 1109 --------------------TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSI-- 1166 (1858)
Q Consensus 1109 --------------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~-- 1166 (1858)
+..+||+|+ +.+|..+++.|++|+++|||||++++||||+|++++||||+.|.+.
T Consensus 487 ~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~---~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~ 563 (1108)
T 3l9o_A 487 PETDRELPQIKHILPLLRRGIGIHHSGLL---PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 563 (1108)
T ss_dssp HHHTTCCHHHHHHTHHHHHTEEEECSCSC---HHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSC
T ss_pred chhhhhhhhHHHHHHhhhcCeeeecCCCC---HHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccc
Confidence 788999999 9999999999999999999999999999999999999999886655
Q ss_pred ------hhhhhhc---c--C---cceEEEEecCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1167 ------NHYVFQI---A--G---HKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1167 ------e~YIHRI---a--g---~~~aitfvt~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
.+|+||+ | | .+.++.++.+..+.. .+.+++.....++.
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~---~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQ---VAKGMVKGQADRLD 615 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHH---HHHHHHHCCCCCCC
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHH---HHHHHhcCCCcccc
Confidence 4599999 2 2 336777777643433 34455555444443
No 55
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.76 E-value=6.5e-18 Score=219.28 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=108.6
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+.++||||+|++.++.+++.|++.|+++..+||+++ +.+|.+++++|++|+++||||||+++||+|+|+|++|||||
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~---~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK---TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC---HHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCC---HHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeC
Confidence 379999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred C-----CCChhhhhhhcc-----CcceEEEEecCcccHHHH---------HHHHHHHhhcCCCCCCCccc
Q psy15269 1162 L-----PLSINHYVFQIA-----GHKEAIAFYDPVADIGLA---------SSLIKLLEYSNKHVPTHPHA 1212 (1858)
Q Consensus 1162 l-----P~~~e~YIHRIa-----g~~~aitfvt~~~e~~~l---------~~Ie~~l~~~~q~ip~~~~~ 1212 (1858)
. |.+.++|+||+| +.|.+++|+++ .+..+. +.+++.++......|....+
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~-~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~~ 590 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNAEGRVIMYADK-ITKSMEIAINETKRRREQQERFNEEHGITPKTINK 590 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSS-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred cccccCCCCHHHHHHHhCcccCCCCCEEEEEEeC-CCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhh
Confidence 8 999999999992 22389999987 444333 34555566665566644433
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=226.52 Aligned_cols=101 Identities=24% Similarity=0.233 Sum_probs=89.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC------CCeEEEEecC--------CCCccHHHHHHHHHHHhcCCCcEEEecccccc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS------NMMTIPMSNN--------GTSWSHVECLELLNLFNTGKSSLVIMTLSDFI 1147 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~------g~~~~~LHG~--------ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAAR 1147 (1858)
..++||||++++.++.+++.|++. |+.+..+||+ |+ +.+|.+++++|++|+++|||||++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~---~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT---QNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCC---HHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCC---HHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 579999999999999999999987 9999999999 98 999999999999999999999999999
Q ss_pred CCCCCCcceEEEcCCCCChhhhhhhc--cCcc-eEEEEecC
Q psy15269 1148 GNDFTNVEQVIIYNLPLSINHYVFQI--AGHK-EAIAFYDP 1185 (1858)
Q Consensus 1148 GLDIp~V~~VINyDlP~~~e~YIHRI--ag~~-~aitfvt~ 1185 (1858)
|||+|+|++|||||+|++++.|+||+ ||++ .++.|+.+
T Consensus 477 GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~ 517 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAH 517 (699)
T ss_dssp TSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEE
T ss_pred CCccccCCEEEEeCCCCCHHHHHHHcCCCCCCCceEEEEEe
Confidence 99999999999999999999999999 4444 77777765
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.74 E-value=2.1e-19 Score=230.79 Aligned_cols=247 Identities=13% Similarity=0.073 Sum_probs=169.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++.|+|+||.++.+.+..... . +.....||.. +....++++.||++++... ....
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g-~-------------~vg~~vG~~~-------~~~~~~IlV~TPGrLl~~~-~l~l 316 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHG-I-------------DPNIRTGVRT-------ITTGAPVTYSTYGKFLADG-GCSG 316 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHS-C-------------CCEEECSSCE-------ECCCCSEEEEEHHHHHHTT-SCCT
T ss_pred eEEEEcchHHHHHHHHHHHHHHhC-C-------------CeeEEECcEe-------ccCCCCEEEECcHHHHhCC-Cccc
Confidence 358999999999999775443221 1 1122344422 3456788999999987543 2334
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDS 1029 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eS 1029 (1858)
.+...+|+||| + +++++|..+ +..|++.+++.|+++++ ..|
T Consensus 317 ~~l~~lVlDEA-H----------~l~~~~~~~----l~~Il~~l~~~~~~lli------------------------l~S 357 (666)
T 3o8b_A 317 GAYDIIICDEC-H----------STDSTTILG----IGTVLDQAETAGARLVV------------------------LAT 357 (666)
T ss_dssp TSCSEEEETTT-T----------CCSHHHHHH----HHHHHHHTTTTTCSEEE------------------------EEE
T ss_pred CcccEEEEccc-h----------hcCccHHHH----HHHHHHhhhhcCCceEE------------------------EEC
Confidence 45667889999 6 667788777 99999999988886433 018
Q ss_pred CCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhCCCeE
Q psy15269 1030 LFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMT 1109 (1858)
Q Consensus 1030 AT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~ 1109 (1858)
||+|..+. ...|....+.......+. ...+..+ +..++.+++||||+|++.++.+++.|++.|+++
T Consensus 358 AT~~~~i~------~~~p~i~~v~~~~~~~i~----~~~~~~~----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v 423 (666)
T 3o8b_A 358 ATPPGSVT------VPHPNIEEVALSNTGEIP----FYGKAIP----IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINA 423 (666)
T ss_dssp SSCTTCCC------CCCTTEEEEECBSCSSEE----ETTEEEC----GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcccc------cCCcceEEEeecccchhH----HHHhhhh----hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcE
Confidence 88887432 123322222111111111 0111100 223456899999999999999999999999999
Q ss_pred EEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----------EcC-----------CCCChhh
Q psy15269 1110 IPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----------IYN-----------LPLSINH 1168 (1858)
Q Consensus 1110 ~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----------NyD-----------lP~~~e~ 1168 (1858)
..+||+|+ |++ |+++..+||||||+++|||||+ |++|| ||| +|.+.++
T Consensus 424 ~~lHG~l~---q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~s 492 (666)
T 3o8b_A 424 VAYYRGLD---VSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVS 492 (666)
T ss_dssp EEECTTSC---GGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHH
T ss_pred EEecCCCC---HHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHH
Confidence 99999998 765 4566679999999999999997 99988 899 9999999
Q ss_pred hhhhc--cCcc---eEEEEecCcccHHH--H--HHHHHHHhhcCC
Q psy15269 1169 YVFQI--AGHK---EAIAFYDPVADIGL--A--SSLIKLLEYSNK 1204 (1858)
Q Consensus 1169 YIHRI--ag~~---~aitfvt~~~e~~~--l--~~Ie~~l~~~~q 1204 (1858)
|+||+ +|++ . ++|+++ +|... + +.|++.++....
T Consensus 493 yiQRiGRtGRg~~G~-i~lvt~-~e~~~~~l~~~~i~~~~~~~~~ 535 (666)
T 3o8b_A 493 RSQRRGRTGRGRRGI-YRFVTP-GERPSGMFDSSVLCECYDAGCA 535 (666)
T ss_dssp HHHHHTTBCSSSCEE-EEESCC-CCBCSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCE-EEEEec-chhhcccccHHHHHHHhcCCcc
Confidence 99999 3223 6 899987 44332 2 555555554433
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.73 E-value=4.7e-18 Score=225.31 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=66.7
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhC------------CCeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDS------------NMMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~------------g~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
..|+..|..+|. ..++||||++++.++.+++.|++. |.....+||+|+ +.+|.+++++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~---~~eR~~~l~~ 688 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT---LPSQKGVLDA 688 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCC---HHHHHHHHHH
Confidence 346666666664 279999999999999999999873 667778899999 9999999999
Q ss_pred Hhc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--c--ceEEEEecC
Q psy15269 1131 FNT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--H--KEAIAFYDP 1185 (1858)
Q Consensus 1131 Fr~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~--~~aitfvt~ 1185 (1858)
|++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ . +.++.|+++
T Consensus 689 F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~~ 748 (797)
T 4a2q_A 689 FKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 748 (797)
T ss_dssp -----CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-------CCCEEEEECC
T ss_pred hhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCCCCCCceEEEEEeC
Confidence 999 999999999999999999999999999999999999999954 2 278999987
No 59
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=6.3e-19 Score=218.67 Aligned_cols=256 Identities=11% Similarity=0.086 Sum_probs=164.2
Q ss_pred HHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchh
Q psy15269 843 YFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTA 922 (1858)
Q Consensus 843 ~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q 922 (1858)
+++|++..+.+- ...+.++.|+|+||.|+-+.+.++.-+ +.++
T Consensus 25 ~l~~~l~~~~~~-------------~~~~lil~Ptr~La~Q~~~~l~~~~v~------------------~~~~------ 67 (440)
T 1yks_A 25 FLPQILAECARR-------------RLRTLVLAPTRVVLSEMKEAFHGLDVK------------------FHTQ------ 67 (440)
T ss_dssp HHHHHHHHHHHT-------------TCCEEEEESSHHHHHHHHHHTTTSCEE------------------EESS------
T ss_pred HHHHHHHHHHhc-------------CCeEEEEcchHHHHHHHHHHHhcCCeE------------------Eecc------
Confidence 466777665431 224588999999999999888743100 0000
Q ss_pred hhhhhhhcccccccccccccCcc--c--------cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH
Q psy15269 923 IIDIDKFVRDMRHVSNNILMSPN--Y--------ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV 992 (1858)
Q Consensus 923 ~~dl~~~v~~l~~t~~~ll~~~~--~--------~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~ 992 (1858)
.+ ..+.||+++++... . ........+|+||+++ ++ ......+||..+ .
T Consensus 68 --~~-----~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~----~~-~~~~~~~~~~~~----------~ 125 (440)
T 1yks_A 68 --AF-----SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHF----LD-PASIAARGWAAH----------R 125 (440)
T ss_dssp --CC-----CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTC----CS-HHHHHHHHHHHH----------H
T ss_pred --cc-----eeccCCccceeeecccchhHhhhCcccccCccEEEEECccc----cC-cchHHHHHHHHH----------H
Confidence 00 13788888875211 1 1134566788999988 21 011123333322 2
Q ss_pred hH-HHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECCh--
Q psy15269 993 VN-KFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK-- 1069 (1858)
Q Consensus 993 Lp-k~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~-- 1069 (1858)
++ +.+|.+++ |||+|+.+.+++.. ..|+.... ..++.
T Consensus 126 ~~~~~~~~l~~--------------------------SAT~~~~~~~~~~~--~~~~~~~~------------~~~~~~~ 165 (440)
T 1yks_A 126 ARANESATILM--------------------------TATPPGTSDEFPHS--NGEIEDVQ------------TDIPSEP 165 (440)
T ss_dssp HHTTSCEEEEE--------------------------CSSCTTCCCSSCCC--SSCEEEEE------------CCCCSSC
T ss_pred hccCCceEEEE--------------------------eCCCCchhhhhhhc--CCCeeEee------------eccChHH
Confidence 22 34566666 99998876655432 12222111 11111
Q ss_pred -hhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccC
Q psy15269 1070 -SQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIG 1148 (1858)
Q Consensus 1070 -~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARG 1148 (1858)
.+.+..+.+ ...++||||+|++.++.+++.|++.|+++..+||+ +|.+++++|++|+.+||||||+++||
T Consensus 166 ~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~-------~R~~~~~~F~~g~~~vLVaT~v~e~G 236 (440)
T 1yks_A 166 WNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK-------TFEREYPTIKQKKPDFILATDIAEMG 236 (440)
T ss_dssp CSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS-------SCC--------CCCSEEEESSSTTCC
T ss_pred HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch-------hHHHHHhhhcCCCceEEEECChhhee
Confidence 112222222 24799999999999999999999999999999993 36788999999999999999999999
Q ss_pred CCCCCcceEEE-------------------cCCCCChhhhhhhc---cC----cceEEEEe---cCcccHHHHHHHHHHH
Q psy15269 1149 NDFTNVEQVII-------------------YNLPLSINHYVFQI---AG----HKEAIAFY---DPVADIGLASSLIKLL 1199 (1858)
Q Consensus 1149 LDIp~V~~VIN-------------------yDlP~~~e~YIHRI---ag----~~~aitfv---t~~~e~~~l~~Ie~~l 1199 (1858)
||+| +++||| ||.|.+.++|+||+ |+ .+.++.|+ ++ .|...++.+++.+
T Consensus 237 iDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~-~~~~~l~~l~~~~ 314 (440)
T 1yks_A 237 ANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSE-NNAHHVCWLEASM 314 (440)
T ss_dssp TTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCC-CCTTBHHHHHHHH
T ss_pred eccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCCh-hhhhhhhhhhHHh
Confidence 9999 999996 99999999999999 22 22789997 45 7788888999887
Q ss_pred hhcCCCCCC
Q psy15269 1200 EYSNKHVPT 1208 (1858)
Q Consensus 1200 ~~~~q~ip~ 1208 (1858)
.....+++.
T Consensus 315 ~~~~~~l~~ 323 (440)
T 1yks_A 315 LLDNMEVRG 323 (440)
T ss_dssp HHTTSCCGG
T ss_pred ccccccccc
Confidence 666666553
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.70 E-value=7.3e-18 Score=226.74 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=66.5
Q ss_pred hHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhC------------CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1071 QKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDS------------NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~------------g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
.|+..|.++|. ..++||||++++.++.|++.|++. |.....+||+|+ +.+|.+++++|
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~---~~eR~~il~~F 689 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMT---LPSQKGVLDAF 689 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCC---HHHHHHHHHHh
Confidence 35555665553 279999999999999999999986 666777799999 99999999999
Q ss_pred hc-CCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhccC--cc--eEEEEecC
Q psy15269 1132 NT-GKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAG--HK--EAIAFYDP 1185 (1858)
Q Consensus 1132 r~-G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRIag--~~--~aitfvt~ 1185 (1858)
++ |+++||||||+++||||+|+|++|||||+|+++..|+||+|+ .. .++.|++.
T Consensus 690 r~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRGR~~~g~vi~Li~~ 748 (936)
T 4a2w_A 690 KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSK 748 (936)
T ss_dssp ----CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-------CCCEEEEESC
T ss_pred hccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCCCCCCCCEEEEEEeC
Confidence 99 999999999999999999999999999999999999999944 22 67888876
No 61
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.70 E-value=6.4e-18 Score=219.21 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE--
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII-- 1159 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN-- 1159 (1858)
..++||||+|++.++.+++.|++.++++..+||+ +|.+++++|++|+.+||||||+++||||+| +++|||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~-------eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK-------SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS-------SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH-------HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 4899999999999999999999999999999993 478899999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhhhhhhc---cC---cc-eEEEEe---cCcccHHHHHHHHHHHhhcCCCCC
Q psy15269 1160 ------------------YNLPLSINHYVFQI---AG---HK-EAIAFY---DPVADIGLASSLIKLLEYSNKHVP 1207 (1858)
Q Consensus 1160 ------------------yDlP~~~e~YIHRI---ag---~~-~aitfv---t~~~e~~~l~~Ie~~l~~~~q~ip 1207 (1858)
||+|.++++|+||+ |+ +. .++.|+ ++ .|..+++.+++.+.....+++
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~-~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSE-DDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCC-CCTTBHHHHHHHHHHHTSCBT
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCCh-hHHHHHHHHHHHHhhhhccCC
Confidence 78999999999999 22 22 789996 45 777888888887765544444
No 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.69 E-value=1.4e-16 Score=207.04 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=107.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+.++||||+|++.++.+++.|++.|+++..+||+++ +.+|.+++++|++|+++||||||+++||+|+|+|++||+||
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~---~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD---AFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC---HHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCC---HHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeC
Confidence 479999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred C-----CCChhhhhhhcc-----CcceEEEEecCcccHHHHHH---------HHHHHhhcCCCCCCCc
Q psy15269 1162 L-----PLSINHYVFQIA-----GHKEAIAFYDPVADIGLASS---------LIKLLEYSNKHVPTHP 1210 (1858)
Q Consensus 1162 l-----P~~~e~YIHRIa-----g~~~aitfvt~~~e~~~l~~---------Ie~~l~~~~q~ip~~~ 1210 (1858)
. |.+.++|+||+| +.|.+++|+++ .+..+.+. ++..++......|...
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~-~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~ 582 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNARGEVWLYADR-VSEAMQRAIEETNRRRALQEAYNLEHGITPETV 582 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSS-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 8 999999999992 23389999987 55444443 4444555555555433
No 63
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.5e-17 Score=218.18 Aligned_cols=261 Identities=11% Similarity=0.016 Sum_probs=193.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.|+|+||.|+-+.+..... +-.++.|+..+.. ..++++.||.++.. ..+..
T Consensus 131 rvL~l~PtkaLa~Q~~~~l~~~~~---------------~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~ 188 (1010)
T 2xgj_A 131 RVIYTSPIKALSNQKYRELLAEFG---------------DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSE 188 (1010)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHS---------------CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCT
T ss_pred eEEEECChHHHHHHHHHHHHHHhC---------------CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcc
Confidence 457899999999999887765443 2245677765432 35688999988764 22233
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+|+|||.+ |.++++... ++.++..+++..+.+++
T Consensus 189 ~l~~l~lVViDEaH~----------l~d~~rg~~----~e~il~~l~~~~~il~L------------------------- 229 (1010)
T 2xgj_A 189 VMREVAWVIFDEVHY----------MRDKERGVV----WEETIILLPDKVRYVFL------------------------- 229 (1010)
T ss_dssp TGGGEEEEEEETGGG----------GGCTTTHHH----HHHHHHHSCTTCEEEEE-------------------------
T ss_pred hhhcCCEEEEechhh----------hcccchhHH----HHHHHHhcCCCCeEEEE-------------------------
Confidence 444566778888887 788777666 88888888877777777
Q ss_pred CCCCCcHhH--HHHHHHhcCCCEEEEEccCCcccEEEEEEECC---------h---------------------------
Q psy15269 1028 DSLFSWGDI--EEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP---------K--------------------------- 1069 (1858)
Q Consensus 1028 eSAT~p~~I--~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~---------~--------------------------- 1069 (1858)
|||+|... .+.......+|+.+.........++++++..+ .
T Consensus 230 -SATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (1010)
T 2xgj_A 230 -SATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 308 (1010)
T ss_dssp -ECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------
T ss_pred -cCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc
Confidence 99988643 23333445678887766555556777766422 0
Q ss_pred -------------------hhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCe-------------------
Q psy15269 1070 -------------------SQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMM------------------- 1108 (1858)
Q Consensus 1070 -------------------~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~------------------- 1108 (1858)
..++..++..+. ..++||||+|++.|+.++..|...++.
T Consensus 309 ~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 309 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 112333444443 258999999999999999999876553
Q ss_pred --------------------EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE----cCC--
Q psy15269 1109 --------------------TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII----YNL-- 1162 (1858)
Q Consensus 1109 --------------------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN----yDl-- 1162 (1858)
+..+||+|+ +.+|..+++.|++|+++|||||+++++|||+|++++||+ ||.
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~---~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~ 465 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLL---PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 465 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSC---HHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSC
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCC---HHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcC
Confidence 788999999 999999999999999999999999999999999999999 999
Q ss_pred --CCChhhhhhhc---cCc-----ceEEEEecCcccHHHHHHH
Q psy15269 1163 --PLSINHYVFQI---AGH-----KEAIAFYDPVADIGLASSL 1195 (1858)
Q Consensus 1163 --P~~~e~YIHRI---ag~-----~~aitfvt~~~e~~~l~~I 1195 (1858)
|.++..|+||+ |+. |.++.++++..+...++.+
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999 221 4688898874454444443
No 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.67 E-value=1.6e-16 Score=217.29 Aligned_cols=254 Identities=9% Similarity=-0.005 Sum_probs=192.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc---hhhhhhhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS---TAIIDIDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~---~q~~dl~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++-|+|+||.|.-..+...+.+.++.. ..+.|+.... ....++.++ +++++.|+..+-...
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v-----------~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~- 721 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANWPVRI-----------EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV- 721 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTTTCCE-----------EEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC-
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcCCCeE-----------EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc-
Confidence 568899999999999888876666655532 2233332222 223344454 788899986553222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.......+|+||+++ + ..+ ..++++.+++.++.+++
T Consensus 722 --~~~~l~lvIiDEaH~----~-----------g~~----~~~~l~~l~~~~~vl~l----------------------- 757 (1151)
T 2eyq_A 722 --KFKDLGLLIVDEEHR----F-----------GVR----HKERIKAMRANVDILTL----------------------- 757 (1151)
T ss_dssp --CCSSEEEEEEESGGG----S-----------CHH----HHHHHHHHHTTSEEEEE-----------------------
T ss_pred --cccccceEEEechHh----c-----------ChH----HHHHHHHhcCCCCEEEE-----------------------
Confidence 223446678999988 2 223 45666666666677777
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhh-cCCcEEEEecChHHHHHHHHHHhh
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFL-EGKRSLIFVKTYRDASRIISAVQD 1104 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL-~~~k~IIFvnTk~~ad~L~~~L~~ 1104 (1858)
|||+++....++...+.++..+...+.....+++++....+......++..+ ++.+++|||++++.++.+++.|++
T Consensus 758 ---SATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~ 834 (1151)
T 2eyq_A 758 ---TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 834 (1151)
T ss_dssp ---ESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHH
T ss_pred ---cCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 9999888888888888887766655555555777777766655556665555 458999999999999999999998
Q ss_pred C--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCC-CCChhhhhhhc---cC---
Q psy15269 1105 S--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNL-PLSINHYVFQI---AG--- 1175 (1858)
Q Consensus 1105 ~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDl-P~~~e~YIHRI---ag--- 1175 (1858)
. ++.+..+||+|+ +.+|.+++++|++|+.+|||||+++++|||+|++++||+++. +.++..|+||+ ++
T Consensus 835 ~~p~~~v~~lhg~~~---~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~ 911 (1151)
T 2eyq_A 835 LVPEARIAIGHGQMR---ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 911 (1151)
T ss_dssp HCTTSCEEECCSSCC---HHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB
T ss_pred hCCCCeEEEEeCCCC---HHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC
Confidence 6 889999999999 999999999999999999999999999999999999999998 56889999998 22
Q ss_pred cceEEEEecC
Q psy15269 1176 HKEAIAFYDP 1185 (1858)
Q Consensus 1176 ~~~aitfvt~ 1185 (1858)
++.++.++.+
T Consensus 912 ~g~~~ll~~~ 921 (1151)
T 2eyq_A 912 QAYAWLLTPH 921 (1151)
T ss_dssp CEEEEEEECC
T ss_pred ceEEEEEECC
Confidence 2267877765
No 65
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.66 E-value=2.9e-16 Score=211.88 Aligned_cols=240 Identities=9% Similarity=0.021 Sum_probs=175.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++.|+|+|+.|+-+.+..+..+ ++..++.|+..... ..++++.||.+++. .....
T Consensus 84 ~vlvl~PtraLa~Q~~~~l~~~~~~-------------~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~ 143 (997)
T 4a4z_A 84 KTIYTSPIKALSNQKFRDFKETFDD-------------VNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGAD 143 (997)
T ss_dssp EEEEEESCGGGHHHHHHHHHTTC---------------CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHcCC-------------CeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCch
Confidence 3588999999999998888775532 23356677765432 25678999999875 22233
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
.......+++|||++ +.++||... +++|+..+++..+.+++
T Consensus 144 ~l~~l~lvViDEaH~----------l~d~~~g~~----~e~ii~~l~~~v~iIlL------------------------- 184 (997)
T 4a4z_A 144 LIRDVEFVIFDEVHY----------VNDQDRGVV----WEEVIIMLPQHVKFILL------------------------- 184 (997)
T ss_dssp GGGGEEEEEECCTTC----------CCTTCTTCC----HHHHHHHSCTTCEEEEE-------------------------
T ss_pred hhcCCCEEEEECccc----------ccccchHHH----HHHHHHhcccCCCEEEE-------------------------
Confidence 344566677999987 889999999 99999999887788888
Q ss_pred CCCCCcHhHHHHHHHhc---CCCEEEEEccCCcccEEEEEEE--------------------------------------
Q psy15269 1028 DSLFSWGDIEEESNIEV---EDPIMKLVKPSSVHLVKQYLIR-------------------------------------- 1066 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L---~dpv~I~v~~~~~~~I~Q~~~~-------------------------------------- 1066 (1858)
|||+|... +++..+- ..++.+.........+.++++.
T Consensus 185 -SAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 185 -SATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp -ECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred -cCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 99987554 4444332 2344433322222223332221
Q ss_pred -------------------------------------------------------CChhhHHHHHHHhhcC---CcEEEE
Q psy15269 1067 -------------------------------------------------------TPKSQKIVNLLSFLEG---KRSLIF 1088 (1858)
Q Consensus 1067 -------------------------------------------------------v~~~~Kl~~Ll~lL~~---~k~IIF 1088 (1858)
.+...++..++..+.. .++|||
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF 342 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVF 342 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEE
Confidence 1233445666666653 689999
Q ss_pred ecChHHHHHHHHHHhhCCC---------------------------------------eEEEEecCCCCccHHHHHHHHH
Q psy15269 1089 VKTYRDASRIISAVQDSNM---------------------------------------MTIPMSNNGTSWSHVECLELLN 1129 (1858)
Q Consensus 1089 vnTk~~ad~L~~~L~~~g~---------------------------------------~~~~LHG~ms~~~Q~eR~~~L~ 1129 (1858)
|+|++.|+.++..|.+.++ .+..+||+|+ +.+|..+++
T Consensus 343 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~---~~~R~~v~~ 419 (997)
T 4a4z_A 343 VFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL---PIVKELIEI 419 (997)
T ss_dssp CSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC---HHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC---HHHHHHHHH
Confidence 9999999999999988776 4789999999 999999999
Q ss_pred HHhcCCCcEEEeccccccCCCCCCcceEE--------EcCCCCChhhhhhhc
Q psy15269 1130 LFNTGKSSLVIMTLSDFIGNDFTNVEQVI--------IYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1130 ~Fr~G~~~ILVATDVAARGLDIp~V~~VI--------NyDlP~~~e~YIHRI 1173 (1858)
.|++|+++|||||+++++|||+|++.+|| +++.|.++..|+||+
T Consensus 420 ~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~ 471 (997)
T 4a4z_A 420 LFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMA 471 (997)
T ss_dssp HHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHH
T ss_pred HHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHh
Confidence 99999999999999999999999966555 334444999999999
No 66
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.64 E-value=1.5e-16 Score=194.73 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=98.5
Q ss_pred hhHHHHHHHhhc-------CCcEEEEecChHHHHHHHHHHhhCCCeEEEEec--------CCCCccHHHHHHHHHHHhcC
Q psy15269 1070 SQKIVNLLSFLE-------GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSN--------NGTSWSHVECLELLNLFNTG 1134 (1858)
Q Consensus 1070 ~~Kl~~Ll~lL~-------~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG--------~ms~~~Q~eR~~~L~~Fr~G 1134 (1858)
..|+..|.+++. ..++||||++++.++.+++.|++.|+.+..+|| +|+ +.+|.+++++|++|
T Consensus 342 ~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~---~~~r~~~~~~F~~~ 418 (494)
T 1wp9_A 342 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS---QREQKLILDEFARG 418 (494)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----------CCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC---HHHHHHHHHHHhcC
Confidence 345555555542 479999999999999999999999999999999 888 99999999999999
Q ss_pred CCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc---cC--cceEEEEecC
Q psy15269 1135 KSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI---AG--HKEAIAFYDP 1185 (1858)
Q Consensus 1135 ~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI---ag--~~~aitfvt~ 1185 (1858)
+.+|||||+++++|||+|++++||+||+|+++..|+||+ ++ .+.++.|+++
T Consensus 419 ~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~ 474 (494)
T 1wp9_A 419 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAK 474 (494)
T ss_dssp SCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEET
T ss_pred CceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEec
Confidence 999999999999999999999999999999999999999 22 2378889887
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.64 E-value=1.6e-17 Score=207.03 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=122.2
Q ss_pred cccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 949 DVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 949 ~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
......+|+|||++ .+ ...+.++||..+ +. .++.+|.+++
T Consensus 110 l~~~~~iViDEaH~----~~-~~~~~~~~~~~~----~~-----~~~~~~~il~-------------------------- 149 (459)
T 2z83_A 110 VPNYNLFVMDEAHF----TD-PASIAARGYIAT----KV-----ELGEAAAIFM-------------------------- 149 (459)
T ss_dssp CCCCSEEEESSTTC----CS-HHHHHHHHHHHH----HH-----HTTSCEEEEE--------------------------
T ss_pred ccCCcEEEEECCcc----CC-chhhHHHHHHHH----Hh-----ccCCccEEEE--------------------------
Confidence 34556788999987 22 122445555444 11 1234566777
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhCCCe
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMM 1108 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~ 1108 (1858)
|||+|..+..++.. +.|+.+........ ....++..+.+ ..+++||||+|++.++.+++.|++.|+.
T Consensus 150 SAT~~~~~~~~~~~--~~pi~~~~~~~~~~---------~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~ 216 (459)
T 2z83_A 150 TATPPGTTDPFPDS--NAPIHDLQDEIPDR---------AWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKK 216 (459)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEEECCCCSS---------CCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred EcCCCcchhhhccC--CCCeEEecccCCcc---------hhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHHhcCCc
Confidence 99999876554432 45554321100000 00111222221 1478999999999999999999999999
Q ss_pred EEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEE--------------------cCCCCChhh
Q psy15269 1109 TIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVII--------------------YNLPLSINH 1168 (1858)
Q Consensus 1109 ~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VIN--------------------yDlP~~~e~ 1168 (1858)
+..+||+ +|.+++++|++|+.+||||||+++||||||+ ++||| ||+|.+.++
T Consensus 217 v~~lh~~-------~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 217 VIQLNRK-------SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp EEEESTT-------CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred EEecCHH-------HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999995 3567899999999999999999999999999 99999 889999999
Q ss_pred hhhhc---c--C--cceEEEEecC
Q psy15269 1169 YVFQI---A--G--HKEAIAFYDP 1185 (1858)
Q Consensus 1169 YIHRI---a--g--~~~aitfvt~ 1185 (1858)
|+||+ | | .+.++.|+++
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHhccccCCCCCCCCeEEEEEcc
Confidence 99999 2 2 2368999987
No 68
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.62 E-value=9.3e-17 Score=199.79 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=85.3
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
.+++||||+|++.++.+++.|++.|+.+..+||++. .+++++|++|+.+||||||+++||||+|+ ++|||||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~-------~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF-------DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH-------HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH-------HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECC
Confidence 478999999999999999999999999999999873 46899999999999999999999999999 9999999
Q ss_pred --------------------CCCChhhhhhhc-----cCc--ceEEEEec
Q psy15269 1162 --------------------LPLSINHYVFQI-----AGH--KEAIAFYD 1184 (1858)
Q Consensus 1162 --------------------lP~~~e~YIHRI-----ag~--~~aitfvt 1184 (1858)
+|.+.++|+||+ +|+ +.++.|+.
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 999999999999 222 25666654
No 69
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.61 E-value=8.8e-16 Score=198.95 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=153.6
Q ss_pred eechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc-----Cccc
Q psy15269 872 WLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM-----SPNY 946 (1858)
Q Consensus 872 ~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~-----~~~~ 946 (1858)
.++-|+|+||.|+-+.+..+ |. +-.++.||.. +++.||+++.+ .+.+
T Consensus 183 l~l~PtR~LA~Qi~~~l~~~--g~-------------~v~lltG~~~-------------~iv~TpGr~~~il~~T~e~~ 234 (677)
T 3rc3_A 183 VYCGPLKLLAHEIFEKSNAA--GV-------------PCDLVTGEER-------------VTVQPNGKQASHVSCTVEMC 234 (677)
T ss_dssp EEEESSHHHHHHHHHHHHHT--TC-------------CEEEECSSCE-------------ECCSTTCCCCSEEEEEGGGC
T ss_pred EEEeCHHHHHHHHHHHHHhc--CC-------------cEEEEECCee-------------EEecCCCcccceeEecHhHh
Confidence 67899999999998886554 22 2245566644 25566665553 1122
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhH-HHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVN-KFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lp-k~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+||+++ |.+++|... ++.++..++ +.++.+++
T Consensus 235 ~l~~~v~lvVIDEaH~----------l~d~~~g~~----~~~~l~~l~~~~i~il~~----------------------- 277 (677)
T 3rc3_A 235 SVTTPYEVAVIDEIQM----------IRDPARGWA----WTRALLGLCAEEVHLCGE----------------------- 277 (677)
T ss_dssp CSSSCEEEEEECSGGG----------GGCTTTHHH----HHHHHHHCCEEEEEEEEC-----------------------
T ss_pred hhcccCCEEEEeccee----------cCCccchHH----HHHHHHccCccceEEEec-----------------------
Confidence 2333445667888877 888888888 888877776 33344444
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHHHHHhhcCCcEEEEecChHHHHHHHHHHhhC
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDS 1105 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~Ll~lL~~~k~IIFvnTk~~ad~L~~~L~~~ 1105 (1858)
||| .+.+++++... .+++.+.-... ...+.. . . ..+..+.+ + ....||||+|++.++.+++.|++.
T Consensus 278 ---SAT-~~~i~~l~~~~-~~~~~v~~~~r-~~~l~~---~-~--~~l~~l~~-~-~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 278 ---PAA-IDLVMELMYTT-GEEVEVRDYKR-LTPISV---L-D--HALESLDN-L-RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp ---GGG-HHHHHHHHHHH-TCCEEEEECCC-SSCEEE---C-S--SCCCSGGG-C-CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred ---cch-HHHHHHHHHhc-CCceEEEEeee-cchHHH---H-H--HHHHHHHh-c-CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 666 34566666544 34444322111 111110 0 0 00000111 1 245699999999999999999999
Q ss_pred CCeEEEEecCCCCccHHHHHHHHHHHhc--CCCcEEEeccccccCCCCCCcceEEEcCC--------------CCChhhh
Q psy15269 1106 NMMTIPMSNNGTSWSHVECLELLNLFNT--GKSSLVIMTLSDFIGNDFTNVEQVIIYNL--------------PLSINHY 1169 (1858)
Q Consensus 1106 g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~--G~~~ILVATDVAARGLDIp~V~~VINyDl--------------P~~~e~Y 1169 (1858)
++.+..+||+|+ +.+|.++++.|++ |+.+||||||+++||||+ +|++||+||+ |.+..+|
T Consensus 344 g~~v~~lHG~L~---~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~ 419 (677)
T 3rc3_A 344 GLESAVIYGSLP---PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQA 419 (677)
T ss_dssp TCCCEEECTTSC---HHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHH
T ss_pred CCCeeeeeccCC---HHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHH
Confidence 999999999999 9999999999999 999999999999999999 9999999999 7789999
Q ss_pred hhhc
Q psy15269 1170 VFQI 1173 (1858)
Q Consensus 1170 IHRI 1173 (1858)
+||+
T Consensus 420 ~QR~ 423 (677)
T 3rc3_A 420 LQIA 423 (677)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9999
No 70
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.6e-14 Score=189.35 Aligned_cols=253 Identities=14% Similarity=-0.000 Sum_probs=169.7
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|.|+||.++-+.+..+.. ... +-....|+.....+ .+ ...++++.||+.+.. ..+..
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~-~g~-----------~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~ 141 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWEL-IGF-----------KVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPE 141 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGG-GTC-----------CEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCG
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhc-CCC-----------EEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChh
Confidence 458899999999999888743211 111 22334565443222 12 356788999988774 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
......-+|+|||.+ +.+.++... ++.|+..++ ..+.+..
T Consensus 142 ~l~~~~~vIiDE~H~----------l~~~~~~~~----l~~i~~~~~-~~~ii~l------------------------- 181 (715)
T 2va8_A 142 WLNEVNYFVLDELHY----------LNDPERGPV----VESVTIRAK-RRNLLAL------------------------- 181 (715)
T ss_dssp GGGGEEEEEECSGGG----------GGCTTTHHH----HHHHHHHHH-TSEEEEE-------------------------
T ss_pred HhhccCEEEEechhh----------cCCcccchH----HHHHHHhcc-cCcEEEE-------------------------
Confidence 244566677999977 555566666 777777776 3344455
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEE------------EEECC--------hhhHHHHHHHhhcC-CcEE
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQY------------LIRTP--------KSQKIVNLLSFLEG-KRSL 1086 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~------------~~~v~--------~~~Kl~~Ll~lL~~-~k~I 1086 (1858)
|||++. .+++++.+ ..+. +..... ...+.+. +...+ ...+...+.+.+.. .++|
T Consensus 182 -SATl~n-~~~~~~~l-~~~~-~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 256 (715)
T 2va8_A 182 -SATISN-YKQIAKWL-GAEP-VATNWR-PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVL 256 (715)
T ss_dssp -ESCCTT-HHHHHHHH-TCEE-EECCCC-SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEE
T ss_pred -cCCCCC-HHHHHHHh-CCCc-cCCCCC-CCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCCCEE
Confidence 899875 35666544 3221 111100 0111111 11111 24556666666654 8999
Q ss_pred EEecChHHHHHHHHHHhhCC------------------------------------CeEEEEecCCCCccHHHHHHHHHH
Q psy15269 1087 IFVKTYRDASRIISAVQDSN------------------------------------MMTIPMSNNGTSWSHVECLELLNL 1130 (1858)
Q Consensus 1087 IFvnTk~~ad~L~~~L~~~g------------------------------------~~~~~LHG~ms~~~Q~eR~~~L~~ 1130 (1858)
|||++++.++.+++.|.+.. ..+..+||+|+ +.+|..+++.
T Consensus 257 VF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~---~~~r~~v~~~ 333 (715)
T 2va8_A 257 VFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLS---KALRDLIEEG 333 (715)
T ss_dssp EECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSC---HHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCC---HHHHHHHHHH
Confidence 99999999999999998642 24889999999 9999999999
Q ss_pred HhcCCCcEEEeccccccCCCCCCcceEEE----cC-------CCCChhhhhhhc--cCc------ceEEEEecC
Q psy15269 1131 FNTGKSSLVIMTLSDFIGNDFTNVEQVII----YN-------LPLSINHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1131 Fr~G~~~ILVATDVAARGLDIp~V~~VIN----yD-------lP~~~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
|++|+.+|||||+++++|||+|++++||+ || .|.+..+|+||+ ||+ |.++.++++
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 99999999999999999999999999999 99 899999999999 322 368888876
No 71
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.59 E-value=1.4e-14 Score=184.19 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=125.3
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCC-cccEEE-EEEECChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSS-VHLVKQ-YLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISA 1101 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~-~~~I~Q-~~~~v~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~ 1101 (1858)
++|...+.+++.+.|--+ .+.+.... ...+.+ ..+...+.+|...+++.+. ..++||||+|++.++.++..
T Consensus 416 TGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~ 493 (822)
T 3jux_A 416 TGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSM 493 (822)
T ss_dssp ESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCCe--EEEECCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHH
Confidence 457777778887777433 33443222 223444 3567788899999988775 36899999999999999999
Q ss_pred HhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCC--------CcceEEEcCCCCChhhhhhhc
Q psy15269 1102 VQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFT--------NVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1102 L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp--------~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|++.|+++..|||+.. +++|..+..+|+.| .|+||||+|+||+||+ ++.||||||+|.+.+.|+||+
T Consensus 494 L~~~Gi~~~vLhgkq~---~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qri 568 (822)
T 3jux_A 494 LKKKGIPHQVLNAKYH---EKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLR 568 (822)
T ss_dssp HHTTTCCCEEECSCHH---HHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHH
T ss_pred HHHCCCCEEEeeCCch---HHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhh
Confidence 9999999999999866 66666666667766 6999999999999998 667999999999999999999
Q ss_pred ---cCc---ceEEEEecCcccHHH----HHHHHHHHhh
Q psy15269 1174 ---AGH---KEAIAFYDPVADIGL----ASSLIKLLEY 1201 (1858)
Q Consensus 1174 ---ag~---~~aitfvt~~~e~~~----l~~Ie~~l~~ 1201 (1858)
|++ |.+++|++. +|..+ -..+.+++..
T Consensus 569 GRTGRqG~~G~a~~fvsl-eD~l~r~fg~~~~~~~m~~ 605 (822)
T 3jux_A 569 GRAGRQGDPGESIFFLSL-EDDLLRIFGSEQIGKVMNI 605 (822)
T ss_dssp TTSSCSSCCCEEEEEEET-TSHHHHHTTHHHHHHHHHH
T ss_pred CccccCCCCeeEEEEech-hHHHHHhhhHHHHHHHHHH
Confidence 222 389999998 44222 1345555544
No 72
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.58 E-value=3.1e-15 Score=196.28 Aligned_cols=273 Identities=14% Similarity=-0.010 Sum_probs=182.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|+|+||.++-+.+..+.. .. ++-..+.|+....... ....++++.||..+.. ..+..
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~-~g-----------~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~ 134 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEK-IG-----------LRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSS 134 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGG-GT-----------CCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCT
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHh-cC-----------CEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChh
Confidence 358899999999999888753321 11 1234456665433321 2356788999988764 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccC
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNST 1027 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~ 1027 (1858)
......-+|+|||.. +.+.++... ++.|+..+++..+.+.+
T Consensus 135 ~l~~~~~vIiDE~H~----------l~~~~r~~~----~~~ll~~l~~~~~ii~l------------------------- 175 (720)
T 2zj8_A 135 WIKDVKILVADEIHL----------IGSRDRGAT----LEVILAHMLGKAQIIGL------------------------- 175 (720)
T ss_dssp TGGGEEEEEEETGGG----------GGCTTTHHH----HHHHHHHHBTTBEEEEE-------------------------
T ss_pred hhhcCCEEEEECCcc----------cCCCcccHH----HHHHHHHhhcCCeEEEE-------------------------
Confidence 234556677899877 666666666 88887777643344455
Q ss_pred CCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEE------ECC-----hhhHHHHHHHhhcC-CcEEEEecChHHH
Q psy15269 1028 DSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLI------RTP-----KSQKIVNLLSFLEG-KRSLIFVKTYRDA 1095 (1858)
Q Consensus 1028 eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~------~v~-----~~~Kl~~Ll~lL~~-~k~IIFvnTk~~a 1095 (1858)
|||+|. .+++++.+ ..+. +... .....+...+. ... ...+...+.+.+.. .++||||+|++.+
T Consensus 176 -SATl~n-~~~~~~~l-~~~~-~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~ 250 (720)
T 2zj8_A 176 -SATIGN-PEELAEWL-NAEL-IVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKA 250 (720)
T ss_dssp -ECCCSC-HHHHHHHT-TEEE-EECC-CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHH
T ss_pred -cCCcCC-HHHHHHHh-CCcc-cCCC-CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHH
Confidence 899875 45666543 3211 1111 11111222221 111 23445566665554 8999999999999
Q ss_pred HHHHHHHhhC------------------C---------------CeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec
Q psy15269 1096 SRIISAVQDS------------------N---------------MMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT 1142 (1858)
Q Consensus 1096 d~L~~~L~~~------------------g---------------~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT 1142 (1858)
+.++..|.+. + ..+..+||+|+ +.+|..+++.|++|+++|||||
T Consensus 251 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~---~~~R~~v~~~f~~g~~~vlvaT 327 (720)
T 2zj8_A 251 ERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG---RDERVLVEENFRKGIIKAVVAT 327 (720)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC---HHHHHHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC---HHHHHHHHHHHHCCCCeEEEEC
Confidence 9999999753 1 24899999999 9999999999999999999999
Q ss_pred cccccCCCCCCcceEEE----cC----CCCChhhhhhhc--cCc------ceEEEEecCcccHHHHHHHHHHHhhcCCCC
Q psy15269 1143 LSDFIGNDFTNVEQVII----YN----LPLSINHYVFQI--AGH------KEAIAFYDPVADIGLASSLIKLLEYSNKHV 1206 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VIN----yD----lP~~~e~YIHRI--ag~------~~aitfvt~~~e~~~l~~Ie~~l~~~~q~i 1206 (1858)
+++++|+|+|++++||+ || .|.+..+|+||+ ||+ |.++.++++ .+ ....+++++.....++
T Consensus 328 ~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~-~~--~~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 328 PTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTS-DD--PREVMNHYIFGKPEKL 404 (720)
T ss_dssp STTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSS-SC--HHHHHHHHTTSCCCCC
T ss_pred cHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecC-cc--HHHHHHHHhcCCCCCc
Confidence 99999999999999999 88 699999999999 332 258888887 44 2223445555444444
Q ss_pred C
Q psy15269 1207 P 1207 (1858)
Q Consensus 1207 p 1207 (1858)
.
T Consensus 405 ~ 405 (720)
T 2zj8_A 405 F 405 (720)
T ss_dssp C
T ss_pred E
Confidence 3
No 73
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.56 E-value=3.5e-16 Score=206.14 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=168.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccc-cCCchhhhhhhhhcccccccccccccC-cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAG-LEPSTAIIDIDKFVRDMRHVSNNILMS-PNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG-~~~~~q~~dl~~~v~~l~~t~~~ll~~-~~~~ 947 (1858)
.+.++.|+|++|.++.+.+.... .... ....|+ +.... ......++++.||+.++.. ....
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~---~~~v-----------~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~~ 204 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM---DVKL-----------GEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMEDH 204 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT---TCCB-----------TTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHST
T ss_pred eEEecCchHHHHHHHHHHHHHHh---CCch-----------hheecceecccc---ccCCCCCEEEECHHHHHHHHhhCc
Confidence 35778899999999977543221 1111 112222 11111 1123456788899888741 1112
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHH---HHHHHhhhccCCCCccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNK---FRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk---~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
.......+|+||++. ++++. + .+..+++.+.+ ..+++++
T Consensus 205 ~l~~~~~lIlDEah~---------R~ld~----d---~~~~~l~~l~~~~~~~~iIl~---------------------- 246 (773)
T 2xau_A 205 DLSRYSCIILDEAHE---------RTLAT----D---ILMGLLKQVVKRRPDLKIIIM---------------------- 246 (773)
T ss_dssp TCTTEEEEEECSGGG---------CCHHH----H---HHHHHHHHHHHHCTTCEEEEE----------------------
T ss_pred cccCCCEEEecCccc---------cccch----H---HHHHHHHHHHHhCCCceEEEE----------------------
Confidence 345567788999973 02221 1 12222222222 2244555
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHHHH----HHHhh---cCCcEEEEecChHHHHH
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVN----LLSFL---EGKRSLIFVKTYRDASR 1097 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl~~----Ll~lL---~~~k~IIFvnTk~~ad~ 1097 (1858)
|||.+. +.+++ ++.++..+.+... ...++++|...+..++... +++++ ..+++||||++++.++.
T Consensus 247 ----SAT~~~--~~l~~-~~~~~~vi~v~gr-~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~ 318 (773)
T 2xau_A 247 ----SATLDA--EKFQR-YFNDAPLLAVPGR-TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIED 318 (773)
T ss_dssp ----ESCSCC--HHHHH-HTTSCCEEECCCC-CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHH
T ss_pred ----eccccH--HHHHH-HhcCCCcccccCc-ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHH
Confidence 888863 45554 4454444555433 2357777777666555433 33333 24899999999999999
Q ss_pred HHHHHhh-----------CCCeEEEEecCCCCccHHHHHHHHHHHh-----cCCCcEEEeccccccCCCCCCcceEEEcC
Q psy15269 1098 IISAVQD-----------SNMMTIPMSNNGTSWSHVECLELLNLFN-----TGKSSLVIMTLSDFIGNDFTNVEQVIIYN 1161 (1858)
Q Consensus 1098 L~~~L~~-----------~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr-----~G~~~ILVATDVAARGLDIp~V~~VINyD 1161 (1858)
+++.|++ .++.+..+||+|+ +.+|.++++.|+ +|+.+||||||+|++|||||+|++||+||
T Consensus 319 l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~---~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g 395 (773)
T 2xau_A 319 AVRKISLEGDQLVREEGCGPLSVYPLYGSLP---PHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPG 395 (773)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEEECTTCC---HHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECS
T ss_pred HHHHHHHHHHhhcccccCCCeEEEEeCCCCC---HHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCC
Confidence 9999985 6889999999999 999999999999 99999999999999999999999999998
Q ss_pred C------------------CCChhhhhhhc--cCc---ceEEEEecC
Q psy15269 1162 L------------------PLSINHYVFQI--AGH---KEAIAFYDP 1185 (1858)
Q Consensus 1162 l------------------P~~~e~YIHRI--ag~---~~aitfvt~ 1185 (1858)
+ |.+.++|+||+ +|+ |.++.|+++
T Consensus 396 ~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~ 442 (773)
T 2xau_A 396 FSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTE 442 (773)
T ss_dssp EEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCH
T ss_pred CccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecH
Confidence 8 88999999999 332 378988876
No 74
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.56 E-value=5.1e-16 Score=203.99 Aligned_cols=254 Identities=11% Similarity=0.011 Sum_probs=164.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh---hhhh-cccccccccccccCcc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID---IDKF-VRDMRHVSNNILMSPN 945 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d---l~~~-v~~l~~t~~~ll~~~~ 945 (1858)
.+.++.|+|+||.|+-+.+..++....+ +..++.||......... +..+ .++++.||..+.+...
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~gi-----------~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~ 487 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKFNI-----------HVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVH 487 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSSC-----------CEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhcCc-----------eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhh
Confidence 3578999999999999888777654443 44677888765544333 3344 7889999987754322
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.....-+|+||+++ + |+... .++.......+.+++
T Consensus 488 ---~~~l~lVVIDEaHr----~---------g~~qr------~~l~~~~~~~~vL~m----------------------- 522 (780)
T 1gm5_A 488 ---FKNLGLVIIDEQHR----F---------GVKQR------EALMNKGKMVDTLVM----------------------- 522 (780)
T ss_dssp ---CSCCCEEEEESCCC----C--------------------CCCCSSSSCCCEEEE-----------------------
T ss_pred ---ccCCceEEecccch----h---------hHHHH------HHHHHhCCCCCEEEE-----------------------
Confidence 23446688999988 2 22211 000000011223333
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEECChhhHH-HHHHHhhc-CCcEEEEecCh--------HHH
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI-VNLLSFLE-GKRSLIFVKTY--------RDA 1095 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v~~~~Kl-~~Ll~lL~-~~k~IIFvnTk--------~~a 1095 (1858)
|||+++....++...-.+...+.-.+.....+...+......+++ ..+.+.+. +.+++|||++. +.+
T Consensus 523 ---SATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a 599 (780)
T 1gm5_A 523 ---SATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSA 599 (780)
T ss_dssp ---ESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHH
T ss_pred ---eCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHH
Confidence 899876655544322122222222122223344443333332222 22333333 37899999865 458
Q ss_pred HHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCC-Chhhhhh
Q psy15269 1096 SRIISAVQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPL-SINHYVF 1171 (1858)
Q Consensus 1096 d~L~~~L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~-~~e~YIH 1171 (1858)
+.+++.|++ .++.+..+||+|+ +.+|.+++++|++|+++|||||+++++|+|+|++++||+||.|. ....|.|
T Consensus 600 ~~l~~~L~~~~~~~~~v~~lHG~m~---~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Q 676 (780)
T 1gm5_A 600 VEMYEYLSKEVFPEFKLGLMHGRLS---QEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQ 676 (780)
T ss_dssp HHHHHSGGGSCC---CBCCCCSSSC---CSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeCCCC---HHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 899999988 5789999999999 99999999999999999999999999999999999999999997 4666777
Q ss_pred hc---cC---cceEEEEecC
Q psy15269 1172 QI---AG---HKEAIAFYDP 1185 (1858)
Q Consensus 1172 RI---ag---~~~aitfvt~ 1185 (1858)
|+ |+ .+.++.++++
T Consensus 677 r~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 677 LRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp HHHTSCCSSTTCEEECCCCS
T ss_pred HhcccCcCCCCCEEEEEECC
Confidence 77 22 2378888875
No 75
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.56 E-value=9.3e-15 Score=191.20 Aligned_cols=254 Identities=11% Similarity=0.004 Sum_probs=172.6
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNYE 947 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~~ 947 (1858)
.+.++-|.|+||.++-+.+..+. ...+ +-..+.|+.....+ .+ ...++++.||..+.. ..+..
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~-~~g~-----------~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~l~~~~~ 134 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWE-KIGL-----------RIGISTGDYESRDE--HL-GDCDIIVTTSEKADSLIRNRAS 134 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTT-TTTC-----------CEEEECSSCBCCSS--CS-TTCSEEEEEHHHHHHHHHTTCS
T ss_pred cEEEEeCcHHHHHHHHHHHHHHH-hcCC-----------EEEEEeCCCCcchh--hc-cCCCEEEECHHHHHHHHHcChh
Confidence 45889999999999988875322 1122 22344565443221 11 256788999988774 22222
Q ss_pred ccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH---HHHhhhccCCCCccccccccccccccc
Q psy15269 948 SDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR---AELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 948 ~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R---QtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
......-+|+|||.+ +.+.++... ++.|+..+.+.+ +.++.
T Consensus 135 ~l~~~~~vIiDE~H~----------l~~~~r~~~----~~~ll~~l~~~~~~~~ii~l---------------------- 178 (702)
T 2p6r_A 135 WIKAVSCLVVDEIHL----------LDSEKRGAT----LEILVTKMRRMNKALRVIGL---------------------- 178 (702)
T ss_dssp GGGGCCEEEETTGGG----------GGCTTTHHH----HHHHHHHHHHHCTTCEEEEE----------------------
T ss_pred HHhhcCEEEEeeeee----------cCCCCcccH----HHHHHHHHHhcCcCceEEEE----------------------
Confidence 244566677898877 666666666 777777765432 22333
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEE------ECCh-------hhHHHHHHHhhcC-CcEEEEec
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLI------RTPK-------SQKIVNLLSFLEG-KRSLIFVK 1090 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~------~v~~-------~~Kl~~Ll~lL~~-~k~IIFvn 1090 (1858)
|||+|. .+++++.+ ..++ +..... ...+...+. .... ..+...+.+.+.. +++||||+
T Consensus 179 ----SATl~n-~~~~~~~l-~~~~-~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~ 250 (702)
T 2p6r_A 179 ----SATAPN-VTEIAEWL-DADY-YVSDWR-PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFES 250 (702)
T ss_dssp ----ECCCTT-HHHHHHHT-TCEE-EECCCC-SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHTTCCEEEECS
T ss_pred ----CCCcCC-HHHHHHHh-CCCc-ccCCCC-CccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcC
Confidence 899885 56676644 3222 111111 111222111 1111 1155666666654 89999999
Q ss_pred ChHHHHHHHHHHhhC------------------------------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE
Q psy15269 1091 TYRDASRIISAVQDS------------------------------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI 1140 (1858)
Q Consensus 1091 Tk~~ad~L~~~L~~~------------------------------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV 1140 (1858)
+++.++.+++.|.+. +..+..+||+|+ +.+|..+++.|++|+.+|||
T Consensus 251 s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~---~~~R~~v~~~f~~g~~~vlv 327 (702)
T 2p6r_A 251 TRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL---NGQRRVVEDAFRRGNIKVVV 327 (702)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC---HHHHHHHHHHHHTTSCCEEE
T ss_pred CHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC---HHHHHHHHHHHHCCCCeEEE
Confidence 999999999998752 235778999999 99999999999999999999
Q ss_pred eccccccCCCCCCcceEEE----cC---CCCChhhhhhhc--cCc------ceEEEEecC
Q psy15269 1141 MTLSDFIGNDFTNVEQVII----YN---LPLSINHYVFQI--AGH------KEAIAFYDP 1185 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VIN----yD---lP~~~e~YIHRI--ag~------~~aitfvt~ 1185 (1858)
||+++++|+|+|++++||+ || .|.+..+|+||+ ||+ |.++.++++
T Consensus 328 aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 387 (702)
T 2p6r_A 328 ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGK 387 (702)
T ss_dssp ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCG
T ss_pred ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecC
Confidence 9999999999999999999 77 799999999999 222 368888886
No 76
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.52 E-value=3.3e-15 Score=184.89 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=78.2
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcce-----
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQ----- 1156 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~----- 1156 (1858)
.+++||||+|++.++.+++.|++.++.+..+||++ |.+++++|++|+.+||||||++++|+|+| +.+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~-------r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT-------FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT-------HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc-------HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecC
Confidence 37899999999999999999999999999999963 56789999999999999999999999999 655
Q ss_pred ------------EEEcCCCCChhhhhhhc
Q psy15269 1157 ------------VIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1157 ------------VINyDlP~~~e~YIHRI 1173 (1858)
|||||.|.+.++|+||+
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~ 271 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRR 271 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHH
T ss_pred ccccceecccceeecccccCCHHHHHHhh
Confidence 68999999999999999
No 77
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.49 E-value=1.8e-14 Score=180.89 Aligned_cols=241 Identities=12% Similarity=0.042 Sum_probs=162.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++-|+++|+.|.-+.+..+...++. +...+.||.....+ +....++++.|+..+..... ...
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~~~-~~~ 223 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFSHA-----------MIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK-EWF 223 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSCGG-----------GEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTSCG-GGG
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCCcc-----------ceEEEecCCccccc---cccCCcEEEEeHHHHhhchh-hhh
Confidence 4689999999999998888766433322 33456677554433 34467788999997775422 333
Q ss_pred ccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDS 1029 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eS 1029 (1858)
....-+|+||+.+ +.. ++ ++.|++.+++.++.+.+ |
T Consensus 224 ~~~~liIiDE~H~----------~~~----~~----~~~il~~~~~~~~~l~l--------------------------S 259 (510)
T 2oca_A 224 SQFGMMMNDECHL----------ATG----KS----ISSIISGLNNCMFKFGL--------------------------S 259 (510)
T ss_dssp GGEEEEEEETGGG----------CCH----HH----HHHHGGGCTTCCEEEEE--------------------------E
T ss_pred hcCCEEEEECCcC----------CCc----cc----HHHHHHhcccCcEEEEE--------------------------E
Confidence 4456677999988 221 23 55665555444455555 7
Q ss_pred CCCcHhHHH-HHHHhcCCCEEEEEccCCc--------ccEEEEEEECCh---------------------hhHHHHHHHh
Q psy15269 1030 LFSWGDIEE-ESNIEVEDPIMKLVKPSSV--------HLVKQYLIRTPK---------------------SQKIVNLLSF 1079 (1858)
Q Consensus 1030 AT~p~~I~~-la~~~L~dpv~I~v~~~~~--------~~I~Q~~~~v~~---------------------~~Kl~~Ll~l 1079 (1858)
||++....+ +....+.+|..+.+..... ..+....+..+. ..|...+.++
T Consensus 260 ATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (510)
T 2oca_A 260 GSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKL 339 (510)
T ss_dssp SCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred eCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHH
Confidence 777665433 2222233444333222110 011222222211 1222333333
Q ss_pred hc------CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEec-cccccCCCCC
Q psy15269 1080 LE------GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMT-LSDFIGNDFT 1152 (1858)
Q Consensus 1080 L~------~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT-DVAARGLDIp 1152 (1858)
+. ..++|||++ .+.++.+++.|.+.+..+..+||+++ +.+|.+++++|++|+.+||||| +++++|+|+|
T Consensus 340 l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~---~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip 415 (510)
T 2oca_A 340 AIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVD---TETRNIMKTLAENGKGIIIVASYGVFSTGISVK 415 (510)
T ss_dssp HHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTT---HHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCC
T ss_pred HHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCC---HHHHHHHHHHHhCCCCCEEEEEcChhhcccccc
Confidence 32 245677776 78889999999999889999999999 9999999999999999999999 9999999999
Q ss_pred CcceEEEcCCCCChhhhhhhc
Q psy15269 1153 NVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1153 ~V~~VINyDlP~~~e~YIHRI 1173 (1858)
++++||+||.|.++..|+||+
T Consensus 416 ~v~~vi~~~~~~s~~~~~Q~~ 436 (510)
T 2oca_A 416 NLHHVVLAHGVKSKIIVLQTI 436 (510)
T ss_dssp SEEEEEESSCCCSCCHHHHHH
T ss_pred cCcEEEEeCCCCCHHHHHHHH
Confidence 999999999999999999998
No 78
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.46 E-value=1.8e-13 Score=159.57 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=95.9
Q ss_pred ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc-EE
Q psy15269 1068 PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDS-NMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS-LV 1139 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~-g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~-IL 1139 (1858)
....|+..|.+++. +.|+||||+++..++.+...|.+. |+++..+||+++ +.+|.+++++|+++ +++ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~---~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS---KKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC---HHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCC---HHHHHHHHHHhcCCCCCCEEE
Confidence 45667777776663 489999999999999999999985 999999999999 99999999999998 777 79
Q ss_pred EeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecC
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDP 1185 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~ 1185 (1858)
++|+++++|||++.+++|||||+|+++..|+||+ |.++ ..+.|++.
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 9999999999999999999999999999999998 2222 45777775
No 79
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.46 E-value=4.9e-13 Score=147.71 Aligned_cols=144 Identities=14% Similarity=0.193 Sum_probs=106.8
Q ss_pred eeeEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeec
Q psy15269 1410 DSVSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWP 1476 (1858)
Q Consensus 1410 ~~f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~ 1476 (1858)
-++++||+++++ +++++|+.+|+++.. ....+||.++|++|.||||+++. +...-.||||+..
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~----~~~~w~vGV~~~s 84 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVT----QKEAWDLGVCRDS 84 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECT----TCSCEEEEEEETT
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEec----CCceEEEEEeeCC
Confidence 348999999999 999999999998763 24579999999999999999874 2334789999999
Q ss_pred cc---cCCCCCCCceeEEEeCCce--eeeCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCc--cccccccCCCCCCc
Q psy15269 1477 IR---DYNHRTTGDMWLYRAYSGN--VYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGE--EPHLAFQDLDTSAP 1549 (1858)
Q Consensus 1477 ~~---~~~~~~~~~~W~y~~~~g~--~~h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~--~~GvAF~~l~~~~~ 1549 (1858)
+. ...++.++.+|...-.++. .+|+... ..+--..+.+|||.||+++|+||||--.. .+=-.|....=.++
T Consensus 85 i~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~--~l~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~I~tF~~~~Fs~p 162 (188)
T 2vok_A 85 VQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQT--TLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFAGP 162 (188)
T ss_dssp CCCSSCCCCSTTTTEEEEEEETTEEEECSSSCE--EECCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCCCCSC
T ss_pred cCCCCccccCCCCCEEEEEEECCEEEEEeCCcc--CEecCCCCCEEEEEEEcCCCEEEEEECCCCCeeeEEecCCCCCCC
Confidence 88 2356788999955555554 2355332 12223468999999999999999995433 23356666333447
Q ss_pred eeEEEEEeec
Q psy15269 1550 LYPIVLFYST 1559 (1858)
Q Consensus 1550 lyP~Vs~y~~ 1559 (1858)
|||+++++..
T Consensus 163 L~P~F~~~~~ 172 (188)
T 2vok_A 163 LRPFFNVGFN 172 (188)
T ss_dssp EEEEEECCCC
T ss_pred EEeEEEeccc
Confidence 9999998754
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.43 E-value=6.7e-13 Score=179.21 Aligned_cols=104 Identities=11% Similarity=0.220 Sum_probs=96.8
Q ss_pred CChhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhh-CCCeEEEEecCCCCccHHHHHHHHHHHhcCC--CcEEE
Q psy15269 1067 TPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQD-SNMMTIPMSNNGTSWSHVECLELLNLFNTGK--SSLVI 1140 (1858)
Q Consensus 1067 v~~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~-~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~--~~ILV 1140 (1858)
+....|...|.++++ ..++||||++++.++.+++.|++ .|+++..+||+|+ +.+|.+++++|++|+ ++|||
T Consensus 485 ~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~---~~~R~~~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS---IIERDRAAAWFAEEDTGAQVLL 561 (968)
T ss_dssp TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC---TTHHHHHHHHHHSTTSSCEEEE
T ss_pred cCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHHhCCCCcccEEE
Confidence 345678888887774 48999999999999999999995 6999999999999 999999999999998 99999
Q ss_pred eccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1141 MTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1141 ATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
||+++++|||+|++++|||||+|+++..|+||+
T Consensus 562 aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~ 594 (968)
T 3dmq_A 562 CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594 (968)
T ss_dssp CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHH
T ss_pred ecchhhcCCCcccCcEEEEecCCCCHHHHHHHh
Confidence 999999999999999999999999999999998
No 81
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=145.21 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=103.6
Q ss_pred eeEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeecc
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~ 1477 (1858)
+|++||+++|. +++++|+.+|++... ....+||.++|++|.||||+++. +...-.||||+..+
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~----~~~~w~vGV~~~s~ 89 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVG----DKTAWILGACKTSI 89 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECT----TCSCEEEEEEETTC
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeC----CCCEEEEEEeeCCc
Confidence 48999999999 999999999998763 23479999999999999999874 23347899999998
Q ss_pred cc---CCCCCCCceeEEEeCCc--e-eeeCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCc-cccccccCCCCCCce
Q psy15269 1478 RD---YNHRTTGDMWLYRAYSG--N-VYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGE-EPHLAFQDLDTSAPL 1550 (1858)
Q Consensus 1478 ~~---~~~~~~~~~W~y~~~~g--~-~~h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~-~~GvAF~~l~~~~~l 1550 (1858)
.. ..++.+...|...-.++ . .+|+... ..+.-..+.+|||.||+++|+|||+--.. .+=-.|....=.++|
T Consensus 90 ~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~--~l~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i~tF~~~~Fs~pl 167 (191)
T 2wl1_A 90 SRKGNMTLSPENGYWVVIMMKENEYQASSVPPT--RLLIKEPPKRVGIFVDYRVGSISFYNVTARSHIYTFASCSFSGPL 167 (191)
T ss_dssp CSSSCCCCCGGGTEEEEEEEETTEEEECCSSCE--ECCCSSCCSEEEEEEETTTTEEEEEETTTTEEEEEECCCCCCSCE
T ss_pred CCCCccccCCCCCEEEEEEeCCCEEEEEcCCCc--cCccccCCcEEEEEEEcCCCEEEEEECCCCcceEEeCCCCCCCCE
Confidence 82 24667888995433322 2 2354332 12223468999999999999999994322 233667764344579
Q ss_pred eEEEEEee
Q psy15269 1551 YPIVLFYS 1558 (1858)
Q Consensus 1551 yP~Vs~y~ 1558 (1858)
||++++..
T Consensus 168 ~P~F~~~~ 175 (191)
T 2wl1_A 168 QPIFSPGT 175 (191)
T ss_dssp EEEEECCC
T ss_pred EeEEEccc
Confidence 99999864
No 82
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.42 E-value=1.7e-12 Score=144.76 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=104.4
Q ss_pred eeEecCCCceE-EEEecCCeEEEecCC------------CCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeecc
Q psy15269 1411 SVSFDKEKCVC-CTVECGGQSLIHGPG------------TRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477 (1858)
Q Consensus 1411 ~f~~D~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~ 1477 (1858)
+|++||+++|. +++++|+.+|++... ....+||.++|++|.||||+++. +...-.||||+..+
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~----~~~~w~vGV~~~si 86 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVG----TSQVWDVGVCKESV 86 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECT----TCSEEEEEEEETTS
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeC----CCCEEEEEEeeCcc
Confidence 58999999999 999999999998763 24579999999999999999873 23347899999998
Q ss_pred ccC---CCCCCCceeEEEeCCceee--eCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCc-cccccccCCCCCCcee
Q psy15269 1478 RDY---NHRTTGDMWLYRAYSGNVY--HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGE-EPHLAFQDLDTSAPLY 1551 (1858)
Q Consensus 1478 ~~~---~~~~~~~~W~y~~~~g~~~--h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~-~~GvAF~~l~~~~~ly 1551 (1858)
..+ .++.+...|...-.++.-| +.+.. ...+.-..+.+|||.||+++|+|||+-... .+=-.|....=.++||
T Consensus 87 ~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~-~~l~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i~tF~~~~Fs~pL~ 165 (201)
T 2fbe_A 87 NRQGKIELSSEHGFLTVGCREGKVFAASTVPM-TPLWVSPQLHRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWR 165 (201)
T ss_dssp CCSSCCCCCTTTTEEEEEEETTTEEEECSSSC-EEECCCTTCCEEEEEEETTTTEEEEEETTTTEEEEEECSCCCSSCEE
T ss_pred CCCCcccccCCCCEEEEEEeCCCEEEEEcCCc-ccCccCCCCCEEEEEEEcCCCEEEEEeCCCCceeEEEcCCCCCCCEE
Confidence 822 3457788995444433322 32222 223334568999999999999999985432 2236777643344799
Q ss_pred EEEEEee
Q psy15269 1552 PIVLFYS 1558 (1858)
Q Consensus 1552 P~Vs~y~ 1558 (1858)
|+++++.
T Consensus 166 P~F~~~~ 172 (201)
T 2fbe_A 166 PFFAHKR 172 (201)
T ss_dssp EEEEEEC
T ss_pred eEEEecc
Confidence 9999863
No 83
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=99.41 E-value=8.7e-13 Score=145.64 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=104.1
Q ss_pred eeEecCCCceEEEEecCCeEEEecCCCCceEEecccccCceEEEEEEEEeecCCCcceEEEEEeeccc--------cCCC
Q psy15269 1411 SVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR--------DYNH 1482 (1858)
Q Consensus 1411 ~f~~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~~~~--------~~~~ 1482 (1858)
+++.||+++|.+++++|+..|+... ...+||.++|++|.||||+++. +...-.||||+..+. +..+
T Consensus 13 ~vTLDp~TA~~l~lSed~r~Vr~~~--~~~VLG~~~ftsGrHYWEVeV~----~~~~W~vGV~~~~~~r~~~~~~~~~~~ 86 (186)
T 3uv9_A 13 DVTLATNNISHAVIAEDKRQVSSRA--GTGVLGSQSITSGKHYWEVDVS----KKSAWILGVCAGFQSDAMYNIEQNENY 86 (186)
T ss_dssp CCCCCCCSSCCCEECTTSSCEECCC--SSCEECSSCBCSSEEEEEEECT----TCSCEEEEEESCSTTTTTTTHHHHTCC
T ss_pred EeEeCCCCcCCceECCCCCEEeecC--CCcCcCCCCCCCCCEEEEEEEc----CCCcEEEEEEEEEecccccccCCCccc
Confidence 3699999999988999999997654 4679999999999999999863 223367999976554 3467
Q ss_pred CCCCceeEEEeCCce---eeeCCCC-CccCC------CcCCCCEEEEEEeccCceEEEE-e-CCccccccccCCCCCCce
Q psy15269 1483 RTTGDMWLYRAYSGN---VYHSGEQ-TTMLP------SFTQGDYITVVLDMDAQTLSFG-K-NGEEPHLAFQDLDTSAPL 1550 (1858)
Q Consensus 1483 ~~~~~~W~y~~~~g~---~~h~~~~-~~~~~------~~~~gd~i~v~lDm~~~tl~f~-~-ng~~~GvAF~~l~~~~~l 1550 (1858)
+.++..|...-.+|. ++|++.. ....| -...+.+|||.||+++|+|+|| + |...+--.|.+..=.++|
T Consensus 87 ~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~tF~~~~Fs~pL 166 (186)
T 3uv9_A 87 QPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCSFSKPV 166 (186)
T ss_dssp CGGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCCCSSCB
T ss_pred CCCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCCCEEEEEeCCCCceEEEEeCCcCCCCCE
Confidence 788899955445554 4577775 33333 3456899999999999999998 2 222344567665444579
Q ss_pred eEEEEEe
Q psy15269 1551 YPIVLFY 1557 (1858)
Q Consensus 1551 yP~Vs~y 1557 (1858)
||++++.
T Consensus 167 ~P~F~~~ 173 (186)
T 3uv9_A 167 FPYLNPR 173 (186)
T ss_dssp EEEEECT
T ss_pred EeEEECC
Confidence 9999984
No 84
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.39 E-value=3.1e-13 Score=173.16 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=80.3
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCe--------EEEEecCCCCccHHHHHHHHHHHhcCCCc---EEEeccccccCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMM--------TIPMSNNGTSWSHVECLELLNLFNTGKSS---LVIMTLSDFIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~--------~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILVATDVAARGLDI 1151 (1858)
.|+||||++++.|+.+++.|++.+.. +..+||+++ ++|.+++++|++|+.+ |||+||++++|+|+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~----~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG----KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH----HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh----HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 78999999999999999999875443 788999985 4899999999998877 89999999999999
Q ss_pred CCcceEEEcCCCCChhhhhhhc
Q psy15269 1152 TNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1152 p~V~~VINyDlP~~~e~YIHRI 1173 (1858)
|+|++||+|+.|.++..|+||+
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~i 537 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIV 537 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHH
T ss_pred hheeEEEEEecCCChHHHHHHH
Confidence 9999999999999999999999
No 85
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.36 E-value=2.1e-14 Score=178.62 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=93.7
Q ss_pred hhhHHHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc
Q psy15269 1069 KSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD 1145 (1858)
Q Consensus 1069 ~~~Kl~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA 1145 (1858)
...|...|.++++ ..++||||++++.++.+++.|. +..+||+++ +.+|.+++++|++|+++|||||+++
T Consensus 333 ~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~---~~~R~~~~~~F~~g~~~vLv~T~~~ 404 (472)
T 2fwr_A 333 SKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS---REEREEILEGFRTGRFRAIVSSQVL 404 (472)
T ss_dssp CSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC---SHHHHTHHHHHHHSSCSBCBCSSCC
T ss_pred ChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCC---HHHHHHHHHHHhCCCCCEEEEcCch
Confidence 3456666666664 4899999999999999999984 557999999 9999999999999999999999999
Q ss_pred ccCCCCCCcceEEEcCCCCChhhhhhhc-----cCc--c--eEEEEecC
Q psy15269 1146 FIGNDFTNVEQVIIYNLPLSINHYVFQI-----AGH--K--EAIAFYDP 1185 (1858)
Q Consensus 1146 ARGLDIp~V~~VINyDlP~~~e~YIHRI-----ag~--~--~aitfvt~ 1185 (1858)
++|+|+|++++||+||.|+++..|+||+ .|. + ..+.|++.
T Consensus 405 ~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 405 DEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred hcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 9999999999999999999999999998 111 2 56667764
No 86
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=137.54 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=102.3
Q ss_pred eeeEecCCCceE-EEEecCCeEEEecCCC-------------CceEEecccccCceEEEEEEEEeecCCCcceEEEEEee
Q psy15269 1410 DSVSFDKEKCVC-CTVECGGQSLIHGPGT-------------RGYGVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRW 1475 (1858)
Q Consensus 1410 ~~f~~D~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vGva~~ 1475 (1858)
.++++||+++|. +++++|+..|+++... ...+||.++|++|.||||+++. +...-.||||+.
T Consensus 12 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~----~~~~W~lGV~~~ 87 (193)
T 3kb5_A 12 EELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVG----DKPRWALGVIAA 87 (193)
T ss_dssp CCCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECT----TCSSEEEEEEET
T ss_pred ccEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeC----cCceEEEEEeeC
Confidence 348999999999 9999999999987643 3569999999999999999864 233479999999
Q ss_pred ccc---cCCCCCCCceeEEEeCCce---eeeCCCCCccCCC-cCCCCEEEEEEeccCceEEEE-eCC---ccccccccCC
Q psy15269 1476 PIR---DYNHRTTGDMWLYRAYSGN---VYHSGEQTTMLPS-FTQGDYITVVLDMDAQTLSFG-KNG---EEPHLAFQDL 1544 (1858)
Q Consensus 1476 ~~~---~~~~~~~~~~W~y~~~~g~---~~h~~~~~~~~~~-~~~gd~i~v~lDm~~~tl~f~-~ng---~~~GvAF~~l 1544 (1858)
.+. ...+..++.+|.....+++ ++|++......+- -..+.+|||.||+++|+|||| ++. ..+=-.|..
T Consensus 88 s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~~~~~~~rVGVfLDye~G~lSFY~v~~~~~~s~I~tF~~- 166 (193)
T 3kb5_A 88 EAPRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRSPERRPTRIGLYLSFGDGVLSFYDASDADALVPLFAFHE- 166 (193)
T ss_dssp TSCCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCCCSSCCSEEEEEEETTTTEEEEEECCSTTCCEEEEEECS-
T ss_pred CcCcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEeecCCCCCEEEEEEEcCCCEEEEEeCCCCCCceEEEEeCC-
Confidence 988 2234456779955444444 2344433211222 345789999999999999998 332 233345654
Q ss_pred CCCCceeEEEEEe
Q psy15269 1545 DTSAPLYPIVLFY 1557 (1858)
Q Consensus 1545 ~~~~~lyP~Vs~y 1557 (1858)
.=+++|||++++.
T Consensus 167 ~Ft~pl~P~F~~~ 179 (193)
T 3kb5_A 167 RLPRPVYPFFDVC 179 (193)
T ss_dssp CCCSCEEEEEECC
T ss_pred CCCCCeECEEEcc
Confidence 2344799999974
No 87
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.24 E-value=3.5e-11 Score=169.61 Aligned_cols=295 Identities=13% Similarity=0.020 Sum_probs=179.5
Q ss_pred cccccCccHHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCC-CCCCCccchhhhcccccc
Q psy15269 833 IHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLL-GPPEAHEETETVHWLKTS 911 (1858)
Q Consensus 833 ~~~~~~~~l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~-~~pl~~~e~~~~~wL~s~ 911 (1858)
|...-+.+ -..++++.+|-+- ++..+..+.|+|+||.++=+.+...+. ... ++-.
T Consensus 950 PTGSGKTl-iaelail~~l~~~------------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g-----------~~V~ 1005 (1724)
T 4f92_B 950 PTGSGKTI-CAEFAILRMLLQS------------SEGRCVYITPMEALAEQVYMDWYEKFQDRLN-----------KKVV 1005 (1724)
T ss_dssp CTTSCCHH-HHHHHHHHHHHHC------------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC-----------CCEE
T ss_pred CCCCCchH-HHHHHHHHHHHhC------------CCCEEEEEcChHHHHHHHHHHHHHHhchhcC-----------CEEE
Confidence 44444522 3445566666432 233468999999999998766543221 122 2334
Q ss_pred ccccccCCchhhhhhhhhccccccccccccc-Cc---cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHH
Q psy15269 912 LLSAGLEPSTAIIDIDKFVRDMRHVSNNILM-SP---NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLE 987 (1858)
Q Consensus 912 ~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~-~~---~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~ 987 (1858)
.+.|+.. .+.. ..+..++++.||.++.. .. .........-+|+||+.. |.+. ..+ .++
T Consensus 1006 ~ltGd~~--~~~~-~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~----------l~d~-rg~----~le 1067 (1724)
T 4f92_B 1006 LLTGETS--TDLK-LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL----------IGGE-NGP----VLE 1067 (1724)
T ss_dssp ECCSCHH--HHHH-HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG----------GGST-THH----HHH
T ss_pred EEECCCC--cchh-hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh----------cCCC-CCc----cHH
Confidence 4556543 1222 22356789999998642 22 223345677788999976 5442 223 366
Q ss_pred HHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEE-EEccC-CcccEEEEEE
Q psy15269 988 QIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMK-LVKPS-SVHLVKQYLI 1065 (1858)
Q Consensus 988 ~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I-~v~~~-~~~~I~Q~~~ 1065 (1858)
.++..+......+- .......-|||.|. .+++++..-.++..+ .+... ....+++++.
T Consensus 1068 ~il~rl~~i~~~~~-------------------~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~ 1127 (1724)
T 4f92_B 1068 VICSRMRYISSQIE-------------------RPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQ 1127 (1724)
T ss_dssp HHHHHHHHHHHTTS-------------------SCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEE
T ss_pred HHHHHHHHHHhhcC-------------------CCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEE
Confidence 66665543221110 00111122899874 567776654333222 22222 2223555554
Q ss_pred ECChhh---HHHH----HHH----hhcCCcEEEEecChHHHHHHHHHHhhC-----------------------------
Q psy15269 1066 RTPKSQ---KIVN----LLS----FLEGKRSLIFVKTYRDASRIISAVQDS----------------------------- 1105 (1858)
Q Consensus 1066 ~v~~~~---Kl~~----Ll~----lL~~~k~IIFvnTk~~ad~L~~~L~~~----------------------------- 1105 (1858)
..+... ++.. +.. .....++||||+||+.|+.++..|...
T Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~ 1207 (1724)
T 4f92_B 1128 GFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDST 1207 (1724)
T ss_dssp EECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHH
T ss_pred eccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHH
Confidence 433221 1111 111 122378999999999999888766421
Q ss_pred -----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEE----------EcCCCCChhhhh
Q psy15269 1106 -----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVI----------IYNLPLSINHYV 1170 (1858)
Q Consensus 1106 -----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VI----------NyDlP~~~e~YI 1170 (1858)
...+..+||+|+ +.+|..+.+.|++|.++|||||+.+|+|+|+|.+.+|| ++..|.++.+|+
T Consensus 1208 L~~~l~~GIa~hHagL~---~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1208 LKETLLNGVGYLHEGLS---PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHTTEEEECTTSC---HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHhCCEEEECCCCC---HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 224788999999 99999999999999999999999999999999999999 344578899999
Q ss_pred hhc--cCc------ceEEEEecCcccHHHHH
Q psy15269 1171 FQI--AGH------KEAIAFYDPVADIGLAS 1193 (1858)
Q Consensus 1171 HRI--ag~------~~aitfvt~~~e~~~l~ 1193 (1858)
||+ ||+ |.++.++.+ .+..+++
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~-~~~~~~~ 1314 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQG-SKKDFFK 1314 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEG-GGHHHHH
T ss_pred HhhccccCCCCCCceEEEEEecc-hHHHHHH
Confidence 999 222 368888876 5555443
No 88
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.22 E-value=2.5e-11 Score=171.09 Aligned_cols=273 Identities=13% Similarity=0.068 Sum_probs=171.2
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SP 944 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~ 944 (1858)
++..+..+.|.|+||.++=+.+...+....++. ..+.|+.....+. -+..++++.||..+-. ..
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V-----------~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~ 198 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITV-----------AELTGDHQLCKEE---ISATQIIVCTPEKWDIITRK 198 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCE-----------EECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEE-----------EEEECCCCCCccc---cCCCCEEEECHHHHHHHHcC
Confidence 455678999999999999888777665555533 4457877654432 1356789999986421 11
Q ss_pred --cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccc
Q psy15269 945 --NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTST 1022 (1858)
Q Consensus 945 --~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~ 1022 (1858)
+........-+|+||+- ++.+ . .+..++.++..+.+....+-. .
T Consensus 199 ~~~~~~l~~v~~vIiDEvH----------~l~d-~----RG~~lE~~l~rl~~~~~~~~~-------------------~ 244 (1724)
T 4f92_B 199 GGERTYTQLVRLIILDEIH----------LLHD-D----RGPVLEALVARAIRNIEMTQE-------------------D 244 (1724)
T ss_dssp STTHHHHTTEEEEEETTGG----------GGGS-T----THHHHHHHHHHHHHHHHHHTC-------------------C
T ss_pred CccchhhcCcCEEEEecch----------hcCC-c----cHHHHHHHHHHHHHHHHhCCC-------------------C
Confidence 11123456667788882 2322 1 123366666554332211110 0
Q ss_pred ccccCCCCCCcHhHHHHHHHhcCCCE-EE-EEccC-CcccEEEEEEECChhhH---HHH----HHHhh----cCCcEEEE
Q psy15269 1023 QHNSTDSLFSWGDIEEESNIEVEDPI-MK-LVKPS-SVHLVKQYLIRTPKSQK---IVN----LLSFL----EGKRSLIF 1088 (1858)
Q Consensus 1023 ~~~~~eSAT~p~~I~~la~~~L~dpv-~I-~v~~~-~~~~I~Q~~~~v~~~~K---l~~----Ll~lL----~~~k~IIF 1088 (1858)
.....-|||.|. .+++|+..-.++. .+ .+..+ ....+++.++.++.... ... +...+ ...++|||
T Consensus 245 ~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF 323 (1724)
T 4f92_B 245 VRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVF 323 (1724)
T ss_dssp CEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEE
T ss_pred CcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEE
Confidence 011122899874 5667754333321 11 12211 22346776665543221 111 22222 23789999
Q ss_pred ecChHHHHHHHHHHhhC-------------------------------------CCeEEEEecCCCCccHHHHHHHHHHH
Q psy15269 1089 VKTYRDASRIISAVQDS-------------------------------------NMMTIPMSNNGTSWSHVECLELLNLF 1131 (1858)
Q Consensus 1089 vnTk~~ad~L~~~L~~~-------------------------------------g~~~~~LHG~ms~~~Q~eR~~~L~~F 1131 (1858)
|+||+.|+.+++.|.+. ...+...||+|+ +.+|..+.+.|
T Consensus 324 ~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~---~~~R~~vE~~F 400 (1724)
T 4f92_B 324 VHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT---RVDRTLVEDLF 400 (1724)
T ss_dssp CSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC---THHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC---HHHHHHHHHHH
Confidence 99999999988887531 123778899999 99999999999
Q ss_pred hcCCCcEEEeccccccCCCCCCcceEEE----cC------CCCChhhhhhhc--cCc------ceEEEEecCcccHHHH
Q psy15269 1132 NTGKSSLVIMTLSDFIGNDFTNVEQVII----YN------LPLSINHYVFQI--AGH------KEAIAFYDPVADIGLA 1192 (1858)
Q Consensus 1132 r~G~~~ILVATDVAARGLDIp~V~~VIN----yD------lP~~~e~YIHRI--ag~------~~aitfvt~~~e~~~l 1192 (1858)
++|.++|||||+.+|+|+|+|.+++||. || .|-++.+|+||+ ||+ |.++.+.++ ++...+
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~-~~~~~~ 478 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH-GELQYY 478 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES-TTCCHH
T ss_pred HCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc-hhHHHH
Confidence 9999999999999999999999999996 54 456889999999 333 256777766 444333
No 89
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.19 E-value=6.8e-11 Score=148.19 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=94.5
Q ss_pred ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhC-CCeEEEEecCCCCccHHHHHHHHHHHhcC-CCc-EE
Q psy15269 1068 PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDS-NMMTIPMSNNGTSWSHVECLELLNLFNTG-KSS-LV 1139 (1858)
Q Consensus 1068 ~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~-g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G-~~~-IL 1139 (1858)
....|+..+.+++. +.|+||||+++..++.+.+.|++. |+.+..+||+++ +.+|.+++++|+++ ..+ +|
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~---~~~R~~~~~~F~~~~~~~vil 398 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS---KKERDDIISKFQNNPSVKFIV 398 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSC---HHHHHHHHHHHHHCTTCCCCE
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCC---HHHHHHHHHHhcCCCCCCEEE
Confidence 34566666666553 379999999999999999999985 999999999999 99999999999998 565 79
Q ss_pred EeccccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecC
Q psy15269 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDP 1185 (1858)
Q Consensus 1140 VATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~ 1185 (1858)
|+|+++++|+|++.+++||+||+|+++..|+||+ |.++ ..+.|++.
T Consensus 399 ~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 399 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp EECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred EecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 9999999999999999999999999999999988 2222 45667765
No 90
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.11 E-value=4.2e-10 Score=146.05 Aligned_cols=126 Identities=5% Similarity=0.087 Sum_probs=102.8
Q ss_pred HHHHHHhhc---CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc---EEEeccccc
Q psy15269 1073 IVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS---LVIMTLSDF 1146 (1858)
Q Consensus 1073 l~~Ll~lL~---~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILVATDVAA 1146 (1858)
+..++..+. +.|+|||++++..++.+.+.|+..|+.+..+||+++ +.+|.+++++|+++... +||+|++++
T Consensus 404 l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~---~~~R~~~i~~F~~~~~~~~v~L~st~a~g 480 (644)
T 1z3i_X 404 LDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS---IKKRAKIVERFNNPSSPEFIFMLSSKAGG 480 (644)
T ss_dssp HHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCC---HHHHHHHHHHHHSTTCCCCEEEEEGGGSC
T ss_pred HHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCC---HHHHHHHHHHhcCCCCCcEEEEEeccccc
Confidence 444444442 479999999999999999999999999999999999 99999999999998764 899999999
Q ss_pred cCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecCc-ccHHHHHHHHHHHhh
Q psy15269 1147 IGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDPV-ADIGLASSLIKLLEY 1201 (1858)
Q Consensus 1147 RGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~~-~e~~~l~~Ie~~l~~ 1201 (1858)
+|||++++++||+||+|+++..|.||+ |.++ ..+.|++.. -|..+++.+++...-
T Consensus 481 ~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 481 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp TTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred CCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 2222 566777753 144455554444433
No 91
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.96 E-value=3.8e-10 Score=152.34 Aligned_cols=90 Identities=10% Similarity=0.054 Sum_probs=75.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhCC------------CeE-EEEecC----------CC-------CccH-----------
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSN------------MMT-IPMSNN----------GT-------SWSH----------- 1121 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g------------~~~-~~LHG~----------ms-------~~~Q----------- 1121 (1858)
.++||||++++.|..+++.|++.+ +++ ..+||+ +. ++.+
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 579999999999999999998754 554 566753 21 0012
Q ss_pred ------------------HHHHHHHHHHhcCCCcEEEeccccccCCCCCCcceEEEcCCCCChhhhhhhc
Q psy15269 1122 ------------------VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173 (1858)
Q Consensus 1122 ------------------~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V~~VINyDlP~~~e~YIHRI 1173 (1858)
.+|..++++|++|+++|||+||++.||+|+|.+ +|+++|.|.....|+||+
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaI 686 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAF 686 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHH
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehh
Confidence 248899999999999999999999999999999 899999999999999998
No 92
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.93 E-value=2.7e-09 Score=137.47 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=98.7
Q ss_pred eEecCCCceEEEEecCCeEEEecCCCC--------------------ceEEecccccCceEEEEEEEEeecCCCcceEEE
Q psy15269 1412 VSFDKEKCVCCTVECGGQSLIHGPGTR--------------------GYGVANIGITRGCYQWKFLIVNEHKGNEGTCIG 1471 (1858)
Q Consensus 1412 f~~D~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~s~G~~~W~~~i~~~~~~~~~~~vG 1471 (1858)
++.||+++|+.++|+|+..|+++.... -.+||..+|++|.||||+++. +...=.+|
T Consensus 412 vtldp~ta~~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~----~~~~w~~G 487 (602)
T 4b3n_A 412 VTLATNNISHAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVS----KKSAWILG 487 (602)
T ss_dssp CCEECCSCCSCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECT----TCSCEEEE
T ss_pred EEeCCCCCCceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEEC----CCeeEEEE
Confidence 799999999977899999999876321 249999999999999999862 23335688
Q ss_pred EEeeccc--------cCCCCCCCceeEEEeCCceee---eCCCC-CccCC------CcCCCCEEEEEEeccCceEEEEe-
Q psy15269 1472 VTRWPIR--------DYNHRTTGDMWLYRAYSGNVY---HSGEQ-TTMLP------SFTQGDYITVVLDMDAQTLSFGK- 1532 (1858)
Q Consensus 1472 va~~~~~--------~~~~~~~~~~W~y~~~~g~~~---h~~~~-~~~~~------~~~~gd~i~v~lDm~~~tl~f~~- 1532 (1858)
||+..+. ...++.+...|....++|+.| |++.. ....| --..+.+|||.||+++|+||||=
T Consensus 488 v~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g~~sFy~~ 567 (602)
T 4b3n_A 488 VCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNI 567 (602)
T ss_dssp EECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTTEEEEEET
T ss_pred EeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCCEEEEEeC
Confidence 8764332 334566778996665666543 77665 33333 23457899999999999999993
Q ss_pred CCc-cccccccCCCCCCceeEEEEE
Q psy15269 1533 NGE-EPHLAFQDLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1533 ng~-~~GvAF~~l~~~~~lyP~Vs~ 1556 (1858)
.+. .+=-.|.+..=+++|||.+++
T Consensus 568 ~~~~~~i~tf~~~~f~~~l~P~f~~ 592 (602)
T 4b3n_A 568 TNHGFLIYKFSQCSFSKPVFPYLNP 592 (602)
T ss_dssp TTTTEEEEEECSCCCCSCBEEEEEC
T ss_pred CCCceeeEeCCCcCCCCCEeCeEEC
Confidence 221 121345544333469999987
No 93
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.9e-09 Score=141.42 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=103.4
Q ss_pred hHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCc---EEEec
Q psy15269 1071 QKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSS---LVIMT 1142 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~---ILVAT 1142 (1858)
.|+..|.+++. +.|+|||++....++.|...|...|+++..+||+++ +.+|.+++++|+++... +|++|
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~---~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP---SAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC---HHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC---HHHHHHHHHHhhCCCCCceEEEEec
Confidence 45555555443 379999999999999999999999999999999999 99999999999986554 89999
Q ss_pred cccccCCCCCCcceEEEcCCCCChhhhhhhc------cCcc--eEEEEecCc-ccHHHHHHHHHHHh
Q psy15269 1143 LSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHK--EAIAFYDPV-ADIGLASSLIKLLE 1200 (1858)
Q Consensus 1143 DVAARGLDIp~V~~VINyDlP~~~e~YIHRI------ag~~--~aitfvt~~-~e~~~l~~Ie~~l~ 1200 (1858)
++++.|||++.+++||+||+|+++..++||+ |.++ ..+.|++.. -|..+++.+++.+.
T Consensus 633 ~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877 3233 566677752 24555555555443
No 94
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.2e-07 Score=103.04 Aligned_cols=148 Identities=17% Similarity=0.218 Sum_probs=116.4
Q ss_pred eEecCCCceEEEEecCCeEEEec----CCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc--c---CC
Q psy15269 1412 VSFDKEKCVCCTVECGGQSLIHG----PGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR--D---YN 1481 (1858)
Q Consensus 1412 f~~D~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~--~---~~ 1481 (1858)
..|=+.++..+.++++++++.-. ++.++.+.-+.|+..|- .+.++|++...+-.| ..|||.+.+-. + ..
T Consensus 7 l~FH~~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~~~ 85 (170)
T 2e63_A 7 GELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR-VFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSA 85 (170)
T ss_dssp SCCCSCCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC-EEEEEEEEECCSSCCCCEEEEESSCTTSCCCCSSG
T ss_pred cccccccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC-EEEEEEEeecCCcceeEEEEEEccChhhccCCCCh
Confidence 35667666669999999998886 89999999999999996 688888887665554 89999998554 1 11
Q ss_pred CCCCCceeEEEeCCceeeeCCCC--CccCC---CcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEE
Q psy15269 1482 HRTTGDMWLYRAYSGNVYHSGEQ--TTMLP---SFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLF 1556 (1858)
Q Consensus 1482 ~~~~~~~W~y~~~~g~~~h~~~~--~~~~~---~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~ 1556 (1858)
..-.++.|++. .-..++|++. .+|+. ....||+|++.+| .+|.|.|++||+.+|+++.|++. +||..|-+
T Consensus 86 ~~L~~~~Wv~~--~~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~-~~G~l~~~iNg~~~g~~~~~ip~--~LwavvDv 160 (170)
T 2e63_A 86 TGLKGGSWVVS--GCSVLRDGRSVLEEYGQDLDQLGEGDRVGVERT-VAGELRLWVNGRDCGVAATGLPP--RVWAVVDL 160 (170)
T ss_dssp GGCCSSEEEES--SSEEEESSCEEEESCSSCGGGCCSSCCEEEEEC-TTSCEEEEESSCEEEEEECCCCS--CEEEEEEC
T ss_pred hhCCCCeEEEe--ccccccCCcccchhccccccccCCCCEEEEEEc-CCcEEEEEECCccceeeEcCCCC--cEEEEEEc
Confidence 22345789873 2456677765 55554 5679999999999 56999999999999999999974 69999999
Q ss_pred eecCCCCCeEEE
Q psy15269 1557 YSTNANGEKVKI 1568 (1858)
Q Consensus 1557 y~~~~~~~~v~~ 1568 (1858)
||++. .|+|
T Consensus 161 yG~t~---~V~i 169 (170)
T 2e63_A 161 YGKCT---QITV 169 (170)
T ss_dssp CTTEE---EEEE
T ss_pred cCCEE---EEEE
Confidence 98887 5554
No 95
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.68 E-value=3e-09 Score=120.95 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+..... ......+.++-|+|+||.|+-+.+..+.....+ +...+.||....
T Consensus 81 ~~~~l~~l~~l~~~~~~~------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~ 143 (242)
T 3fe2_A 81 LSYLLPAIVHINHQPFLE------RGDGPICLVLAPTRELAQQVQQVAAEYCRACRL-----------KSTCIYGGAPKG 143 (242)
T ss_dssp HHHHHHHHHHHHTSCCCC------TTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTC-----------CEEEECTTSCHH
T ss_pred HHHHHHHHHHHHhccccc------cCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCc-----------eEEEEECCCChH
Confidence 346677777765432211 023445789999999999998887766554433 556788999888
Q ss_pred hhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRA 998 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQ 998 (1858)
.+...+.++.++++.||+++++ ............+|+|||++ |.++||.++ ++.|++.+++.+|
T Consensus 144 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~----------l~~~~~~~~----~~~i~~~~~~~~q 209 (242)
T 3fe2_A 144 PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR----------MLDMGFEPQ----IRKIVDQIRPDRQ 209 (242)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH----------HHHTTCHHH----HHHHHTTSCSSCE
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH----------HhhhCcHHH----HHHHHHhCCccce
Confidence 8888888899999999999986 22233444556677888877 889999999 9999999988889
Q ss_pred HHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC
Q psy15269 999 ELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS 1055 (1858)
Q Consensus 999 tLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~ 1055 (1858)
.+++ |||+|++++++++.++++|+.|.++.+
T Consensus 210 ~~~~--------------------------SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 210 TLMW--------------------------SATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEEE--------------------------ESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEE--------------------------EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999 999999999999999999999998754
No 96
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.51 E-value=2.8e-08 Score=113.45 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhhhccccccccc-cccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCC
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNY-TETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~-~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~ 919 (1858)
+-+++|++..+.+-.... +.. ......+.++-|+|+||.|+-+.+..+....++ +...+.||...
T Consensus 75 ~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~ 140 (253)
T 1wrb_A 75 AAFLIPIINHLVCQDLNQ---QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPL-----------RSCVVYGGADT 140 (253)
T ss_dssp HHHHHHHHHHHHTTCC---------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSC-----------CEEEECSSSCS
T ss_pred HHHHHHHHHHHHhhcccc---ccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCc-----------eEEEEECCCCH
Confidence 445666666665432110 000 012345789999999999998887776655444 34567899887
Q ss_pred chhhhhhhhhccccccccccccc--CccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHH--hHH
Q psy15269 920 STAIIDIDKFVRDMRHVSNNILM--SPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSV--VNK 995 (1858)
Q Consensus 920 ~~q~~dl~~~v~~l~~t~~~ll~--~~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~--Lpk 995 (1858)
..+...+....++++.||.++++ ............+|+|||++ |.++||.++ ++.|++. +++
T Consensus 141 ~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~----------~~~~~~~~~----~~~i~~~~~~~~ 206 (253)
T 1wrb_A 141 HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR----------MLDMGFEPQ----IRKIIEESNMPS 206 (253)
T ss_dssp HHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHSSCCCC
T ss_pred HHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH----------HHhCchHHH----HHHHHhhccCCC
Confidence 77877777788999999999985 22223334455677888877 899999998 9998884 343
Q ss_pred --HHHHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccCCc--ccEEEE
Q psy15269 996 --FRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSV--HLVKQY 1063 (1858)
Q Consensus 996 --~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~~~--~~I~Q~ 1063 (1858)
.+|.+++ |||+|++++++++.++++|+.|.++.... .+|+|+
T Consensus 207 ~~~~q~l~~--------------------------SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 207 GINRQTLMF--------------------------SATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp GGGCEEEEE--------------------------ESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred CCCcEEEEE--------------------------EEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 5677788 99999999999999999999998875533 346665
No 97
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.48 E-value=3.3e-08 Score=116.70 Aligned_cols=132 Identities=15% Similarity=0.001 Sum_probs=104.1
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccC---ccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMS---PNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~---~~~ 946 (1858)
.+.++.|+|+||.|+...+..+....+ .++.....||.....+. ....++++.||+++++. .+.
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYP----------ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTST----------TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCC----------CcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCC
Confidence 578999999999999988887766432 12445666775543322 34567899999999862 234
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ |.+ .||..+ +..|++.+++.+|+++|
T Consensus 231 ~~l~~l~~lVlDEad~----------l~~~~~~~~~----~~~i~~~~~~~~q~i~~----------------------- 273 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADV----------MIATQGHQDQ----SIRIQRMLPRNCQMLLF----------------------- 273 (300)
T ss_dssp CCGGGCSEEEETTHHH----------HHHSTTHHHH----HHHHHTTSCTTCEEEEE-----------------------
T ss_pred CChhhceEEEEeCHHH----------HhhccCcHHH----HHHHHHhCCCCCEEEEE-----------------------
Confidence 4456677788888887 777 788888 99999999999999999
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEcc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVKP 1054 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~~ 1054 (1858)
|||+|.+++++++.++++|+.|.++.
T Consensus 274 ---SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 274 ---SATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp ---ESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred ---eccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999999999999998864
No 98
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.41 E-value=9.4e-08 Score=107.89 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+..... .....+.++-|+|+||.|+-+.+..+....++ +...+.||....
T Consensus 77 ~~~~~~~l~~l~~~~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~ 138 (236)
T 2pl3_A 77 LAFLVPVLEALYRLQWTS-------TDGLGVLIISPTRELAYQTFEVLRKVGKNHDF-----------SAGLIIGGKDLK 138 (236)
T ss_dssp HHHHHHHHHHHHHTTCCG-------GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSC-----------CEEEECCC--CH
T ss_pred HHHHHHHHHHHHhhcccc-------cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCe-----------eEEEEECCCCHH
Confidence 346677777665533211 23345689999999999999988877655444 446678887765
Q ss_pred hhhhhhhhhcccccccccccccC--c-cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILMS--P-NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~~--~-~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
.+...+ ...++++.||++++.. . ..........+|+|||++ +.++||..+ +..|++.+++.+
T Consensus 139 ~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~----------~~~~~~~~~----~~~i~~~~~~~~ 203 (236)
T 2pl3_A 139 HEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR----------ILDMGFADT----MNAVIENLPKKR 203 (236)
T ss_dssp HHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH----------HHHTTTHHH----HHHHHHTSCTTS
T ss_pred HHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH----------HhcCCcHHH----HHHHHHhCCCCC
Confidence 555544 4678899999999752 1 122233445677888877 889999988 999999999888
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEcc
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKP 1054 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~ 1054 (1858)
|.+++ |||+|+.++++++.++++|+.|.+..
T Consensus 204 ~~l~~--------------------------SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 204 QTLLF--------------------------SATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEE--------------------------ESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred eEEEE--------------------------EeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 89999 99999999999999999999998764
No 99
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.40 E-value=9.9e-08 Score=110.20 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+..... .....+.++.|+|+||.|+-+.+..+...... +..++.||....
T Consensus 106 ~~~~l~~l~~l~~~~~~~-------~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~ 167 (262)
T 3ly5_A 106 LAFLIPAVELIVKLRFMP-------RNGTGVLILSPTRELAMQTFGVLKELMTHHVH-----------TYGLIMGGSNRS 167 (262)
T ss_dssp HHHHHHHHHHHHHTTCCG-------GGCCCEEEECSSHHHHHHHHHHHHHHTTTCCS-----------CEEEECSSSCHH
T ss_pred HHHHHHHHHHHHhccccc-------cCCceEEEEeCCHHHHHHHHHHHHHHHhhcCc-----------eEEEEECCCCHH
Confidence 446777887777643222 23445789999999999999988887765444 335678888877
Q ss_pred hhhhhhhhhcccccccccccccC---ccccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILMS---PNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~~---~~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
.+...+..+.++++.||+++++. ...........+|+|||++ |.++||.++ ++.|++.+++.+
T Consensus 168 ~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~----------l~~~~~~~~----l~~i~~~~~~~~ 233 (262)
T 3ly5_A 168 AEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR----------ILDVGFEEE----LKQIIKLLPTRR 233 (262)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH----------HHHTTCHHH----HHHHHHHSCSSS
T ss_pred HHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH----------HhhhhHHHH----HHHHHHhCCCCC
Confidence 78888888899999999999852 1112334455677888877 889999999 999999999889
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCC-CEE
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVED-PIM 1049 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~d-pv~ 1049 (1858)
|.+++ |||+|++++++++.++++ |++
T Consensus 234 q~l~~--------------------------SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 234 QTMLF--------------------------SATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp EEEEE--------------------------CSSCCHHHHHHHHHHCSSCCEE
T ss_pred eEEEE--------------------------EecCCHHHHHHHHHHcCCCCee
Confidence 99999 999999999999999975 444
No 100
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.34 E-value=1.2e-07 Score=106.53 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=103.2
Q ss_pred cCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cc
Q psy15269 867 TNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SP 944 (1858)
Q Consensus 867 ~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~ 944 (1858)
....+.++-|+|+||.|+-+.+..+. ... ++...+.||.....+...+.++.++++.||+++++ ..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~ 160 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-YKG-----------LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN 160 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-CTT-----------CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-ccC-----------ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 34456899999999999988877654 122 24567789988888888888889999999999986 22
Q ss_pred cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccc
Q psy15269 945 NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQH 1024 (1858)
Q Consensus 945 ~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~ 1024 (1858)
..........+|+|||++ +.+.||.++ ++.|++.+++.+|.+++
T Consensus 161 ~~~~~~~~~~lViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~l~~---------------------- 204 (228)
T 3iuy_A 161 NSVNLRSITYLVIDEADK----------MLDMEFEPQ----IRKILLDVRPDRQTVMT---------------------- 204 (228)
T ss_dssp TCCCCTTCCEEEECCHHH----------HHHTTCHHH----HHHHHHHSCSSCEEEEE----------------------
T ss_pred CCcCcccceEEEEECHHH----------HhccchHHH----HHHHHHhCCcCCeEEEE----------------------
Confidence 233344456677888877 888999999 99999999888888998
Q ss_pred ccCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 1025 NSTDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 1025 ~~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
|||+|++++++++.++++|+.|.|
T Consensus 205 ----SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 205 ----SATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp ----ESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ----EeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999998864
No 101
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.34 E-value=1.4e-07 Score=106.99 Aligned_cols=134 Identities=16% Similarity=0.080 Sum_probs=96.7
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhh-ccccccccccccc--Ccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKF-VRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~-v~~l~~t~~~ll~--~~~ 945 (1858)
..+.++-|+|+||.|+.+.+..+.....+ +...+.||.....+...+.++ .++++.||+++++ ..+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~ 167 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGA-----------TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR 167 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTC-----------CEEEECC-------------CCCSEEEECHHHHHHHHHTT
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCc-----------eEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC
Confidence 35689999999999999988776654433 234567888777777777765 7899999999885 333
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
+........+|+|||++ |.+.||..+ +..|++.+++.+|.+++
T Consensus 168 ~~~~~~~~~lViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~i~~----------------------- 210 (237)
T 3bor_A 168 YLSPKWIKMFVLDEADE----------MLSRGFKDQ----IYEIFQKLNTSIQVVLL----------------------- 210 (237)
T ss_dssp SSCSTTCCEEEEESHHH----------HHHTTCHHH----HHHHHHHSCTTCEEEEE-----------------------
T ss_pred CcCcccCcEEEECCchH----------hhccCcHHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 44445556677888877 888999888 99999999888888898
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++.++++|+.|.++
T Consensus 211 ---SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 211 ---SATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp ---CSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ---EEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999775
No 102
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.31 E-value=1.2e-07 Score=108.80 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhhhccccccccccccCccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCc
Q psy15269 841 LRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPS 920 (1858)
Q Consensus 841 l~~l~~LL~~Ld~~n~~~P~~~~~~~~~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~ 920 (1858)
+-+++|++..+.+-. ....+.++-|+|+||.|+-+.+..+..... ++...+.||....
T Consensus 95 ~~~~~~il~~l~~~~-----------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-----------~~~~~~~g~~~~~ 152 (249)
T 3ber_A 95 GAFALPILNALLETP-----------QRLFALVLTPTRELAFQISEQFEALGSSIG-----------VQSAVIVGGIDSM 152 (249)
T ss_dssp HHHHHHHHHHHHHSC-----------CSSCEEEECSSHHHHHHHHHHHHHHHGGGT-----------CCEEEECTTSCHH
T ss_pred hHhHHHHHHHHhcCC-----------CCceEEEEeCCHHHHHHHHHHHHHHhccCC-----------eeEEEEECCCChH
Confidence 445666766664321 223468899999999999887766544333 2446678888776
Q ss_pred hhhhhhhhhcccccccccccccCc---cccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHH
Q psy15269 921 TAIIDIDKFVRDMRHVSNNILMSP---NYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFR 997 (1858)
Q Consensus 921 ~q~~dl~~~v~~l~~t~~~ll~~~---~~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~R 997 (1858)
.+...+.+..++++.||+++++.. ..........+|+|||++ +.++||..+ ++.|++.+++.+
T Consensus 153 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~----------l~~~~~~~~----l~~i~~~~~~~~ 218 (249)
T 3ber_A 153 SQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADR----------ILNMDFETE----VDKILKVIPRDR 218 (249)
T ss_dssp HHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHH----------HHHTTCHHH----HHHHHHSSCSSS
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhh----------hhccChHHH----HHHHHHhCCCCC
Confidence 677777778899999999998521 222334455677888877 888999999 999999998888
Q ss_pred HHHhhhccCCCCcccccccccccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 998 AELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 998 QtLLf~~~~~~s~~~~~~s~~~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|.+++ |||+|..++++++.+|++|+.|.++
T Consensus 219 ~~l~~--------------------------SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 219 KTFLF--------------------------SATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEEEE--------------------------ESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred eEEEE--------------------------eccCCHHHHHHHHHHCCCCEEEEec
Confidence 88998 9999999999999999999998764
No 103
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.16 E-value=4.7e-07 Score=99.60 Aligned_cols=133 Identities=14% Similarity=0.053 Sum_probs=106.7
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Ccc
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPN 945 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~ 945 (1858)
...+.++-|+|+|+.++-+.+..+... ++...+.||.....+...+.+..++++.||.+++. ..+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 138 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH-------------LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG 138 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT-------------SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc-------------ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC
Confidence 345689999999999998887766543 24466788888777777777888999999999875 222
Q ss_pred ccccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 946 YESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 946 ~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
.........+|+|||++ +.+.+|..+ ++.|++.+++.+|.+++
T Consensus 139 ~~~~~~~~~iViDEah~----------~~~~~~~~~----~~~i~~~~~~~~~~i~~----------------------- 181 (207)
T 2gxq_A 139 VLDLSRVEVAVLDEADE----------MLSMGFEEE----VEALLSATPPSRQTLLF----------------------- 181 (207)
T ss_dssp SSCCTTCSEEEEESHHH----------HHHTTCHHH----HHHHHHTSCTTSEEEEE-----------------------
T ss_pred CcchhhceEEEEEChhH----------hhccchHHH----HHHHHHhCCccCeEEEE-----------------------
Confidence 33344456677888877 888899888 99999888888888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|+.++++++.++++|+.|.+.
T Consensus 182 ---SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 182 ---SATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp ---CSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ---EEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999998764
No 104
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.11 E-value=4.1e-07 Score=101.55 Aligned_cols=138 Identities=12% Similarity=-0.012 Sum_probs=104.9
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+....+.. .=++...+.||.....+...+....++++.||+++.+ ..+.
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~ 145 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKD-------RMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA 145 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGG-------GCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccc-------cceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC
Confidence 346899999999999988776665543210 0124456778876555555555677899999999885 2223
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ +.+.||..+ ++.|++.+++.+|.+++
T Consensus 146 ~~~~~~~~lViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~l~~------------------------ 187 (219)
T 1q0u_A 146 LDVHTAHILVVDEADL----------MLDMGFITD----VDQIAARMPKDLQMLVF------------------------ 187 (219)
T ss_dssp CCGGGCCEEEECSHHH----------HHHTTCHHH----HHHHHHTSCTTCEEEEE------------------------
T ss_pred CCcCcceEEEEcCchH----------HhhhChHHH----HHHHHHhCCcccEEEEE------------------------
Confidence 3334455677888877 888999888 99999999888888898
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++.++++|+.|.+.
T Consensus 188 --SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 188 --SATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp --ESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred --ecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999998775
No 105
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.03 E-value=9.9e-07 Score=99.41 Aligned_cols=134 Identities=12% Similarity=0.084 Sum_probs=102.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+||.|+-+.+..+....+ .++..++.||.....+...+ +..++++.||+++++ ..+.
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~ 161 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKME----------GLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY 161 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTST----------TCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccC----------CceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC
Confidence 3468999999999999988877654431 23456678887655554444 357889999999985 2233
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcC-CCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTA-LSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mG-F~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ +.++| |.++ ++.|++.+++.+|.+++
T Consensus 162 ~~~~~~~~lViDEah~----------~~~~~~~~~~----~~~i~~~~~~~~~~l~l----------------------- 204 (230)
T 2oxc_A 162 LNPGSIRLFILDEADK----------LLEEGSFQEQ----INWIYSSLPASKQMLAV----------------------- 204 (230)
T ss_dssp SCGGGCCEEEESSHHH----------HHSTTSSHHH----HHHHHHHSCSSCEEEEE-----------------------
T ss_pred cccccCCEEEeCCchH----------hhcCcchHHH----HHHHHHhCCCCCeEEEE-----------------------
Confidence 3344455677888877 88888 8888 99999999888888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEEc
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLVK 1053 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v~ 1053 (1858)
|||+|++++++++.++++|+.|.+.
T Consensus 205 ---SAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 205 ---SATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp ---ESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred ---EeccCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999988664
No 106
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.02 E-value=1.5e-06 Score=95.66 Aligned_cols=132 Identities=17% Similarity=0.085 Sum_probs=103.2
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+....+- ++...+.||.....+...+....++++.||.++++ ..+.
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGG----------AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSS----------CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCC----------ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC
Confidence 34689999999999998887766554321 23456788877666666666778899999999875 2223
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ +.+.+|.+. ++.|++.+++.+|.+++
T Consensus 142 ~~~~~~~~lViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~l~~------------------------ 183 (206)
T 1vec_A 142 AKVDHVQMIVLDEADK----------LLSQDFVQI----MEDIILTLPKNRQILLY------------------------ 183 (206)
T ss_dssp SCCTTCCEEEEETHHH----------HTSTTTHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cCcccCCEEEEEChHH----------hHhhCcHHH----HHHHHHhCCccceEEEE------------------------
Confidence 3344456677888877 778888888 99999999888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEE
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMK 1050 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I 1050 (1858)
|||+|++++++++.++++|+.|
T Consensus 184 --SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 184 --SATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp --ESCCCHHHHHHHHHHCSSCEEE
T ss_pred --EeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999876
No 107
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=97.98 E-value=3.3e-05 Score=83.77 Aligned_cols=141 Identities=12% Similarity=0.157 Sum_probs=107.3
Q ss_pred eEecCCCceEEEEecCCeEEEe-cCCCCceEEecccccCceEEEEEEEEeecCCCcc-eEEEEEeeccc--c-CCCC---
Q psy15269 1412 VSFDKEKCVCCTVECGGQSLIH-GPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEG-TCIGVTRWPIR--D-YNHR--- 1483 (1858)
Q Consensus 1412 f~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~s~G~~~W~~~i~~~~~~~~~-~~vGva~~~~~--~-~~~~--- 1483 (1858)
..|=+.++..+.++++++++.- .++.++++.-+.++..| -.++++|++...+-.| ..|||...+-. . ..+.
T Consensus 9 l~FH~~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~-E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a~ 87 (168)
T 2yue_A 9 LQFHSVHGDNIRISRDGTLARRFESFCRAITFSARPVRIN-ERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYAC 87 (168)
T ss_dssp CCEEEEECTTEEECCSSCCEEECSCSSCCEEEESSCCCSS-CCEEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSSS
T ss_pred cccccccCCCeEECCCCcEEEecccCCceEEEECCCCcCC-CEEEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcCc
Confidence 4455544444999998877654 47889999999999999 4578888877655554 89999998655 2 2332
Q ss_pred ----CCCceeEEEeCCceeeeCCCCCccCCCcCCCCEEEEEEeccCceEEEEeCCccccccccCCCCCCceeEEEEEeec
Q psy15269 1484 ----TTGDMWLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYST 1559 (1858)
Q Consensus 1484 ----~~~~~W~y~~~~g~~~h~~~~~~~~~~~~~gd~i~v~lDm~~~tl~f~~ng~~~GvAF~~l~~~~~lyP~Vs~y~~ 1559 (1858)
...+.|...- ..++. ..||.+++.+| .+|.|.|.+||+..|+++++++.+++||..|-+||+
T Consensus 88 ~dL~~~~~~W~~~l----------~~~~~---~~g~~l~f~v~-~~G~l~~~iNg~~~g~~~~~V~~~~pLwavvDvyG~ 153 (168)
T 2yue_A 88 PDLTNRPGFWAKAL----------HEQYC---EKDNILYYYVN-GAGDVIYGINNEEKGVILTGIDTRSLLWTVIDIYGN 153 (168)
T ss_dssp SHHHHSTTBCCEEC----------CSTTC---CSSCEEEEEEC-TTSEEEEEESSCEEEEEEECCCCSSCCEEEEECCSS
T ss_pred hHHhcCCCEEEEEe----------ccccc---cCCCEEEEEEc-CCCEEEEEECCCccEEEEcCCCCCCceEEEEEccCC
Confidence 2346775420 11111 67899999997 899999999999999999999987899999999999
Q ss_pred CCCCCeEEEEE
Q psy15269 1560 NANGEKVKITD 1570 (1858)
Q Consensus 1560 ~~~~~~v~~~~ 1570 (1858)
+. .|+|+.
T Consensus 154 t~---~V~il~ 161 (168)
T 2yue_A 154 CT---GIEFLD 161 (168)
T ss_dssp CS---EEEEEC
T ss_pred eE---EEEEec
Confidence 98 777763
No 108
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.96 E-value=2e-06 Score=95.93 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=95.6
Q ss_pred ccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccccc--Cccc
Q psy15269 869 SFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 869 ~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~--~~~~ 946 (1858)
..+.++-|+|+|+.|+-+.+..+.....+ +...+.||.....+...+.+ .++++.||.++++ ..+.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~ 150 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDI-----------KVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR 150 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCC-----------CEEEECC----------CTT-CSEEEECHHHHHHHHHTTS
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCc-----------eEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC
Confidence 35689999999999999888776655444 33556777766555555544 7789999999875 2223
Q ss_pred cccccccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCccccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNS 1026 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~ 1026 (1858)
........+|+|||++ +.+.||... +..|++.+++.+|.+++
T Consensus 151 ~~~~~~~~iViDEah~----------~~~~~~~~~----l~~i~~~~~~~~~~i~l------------------------ 192 (224)
T 1qde_A 151 FRTDKIKMFILDEADE----------MLSSGFKEQ----IYQIFTLLPPTTQVVLL------------------------ 192 (224)
T ss_dssp SCCTTCCEEEEETHHH----------HHHTTCHHH----HHHHHHHSCTTCEEEEE------------------------
T ss_pred cchhhCcEEEEcChhH----------HhhhhhHHH----HHHHHHhCCccCeEEEE------------------------
Confidence 3334456677888877 888899888 99999988888888888
Q ss_pred CCCCCCcHhHHHHHHHhcCCCEEEEEccC
Q psy15269 1027 TDSLFSWGDIEEESNIEVEDPIMKLVKPS 1055 (1858)
Q Consensus 1027 ~eSAT~p~~I~~la~~~L~dpv~I~v~~~ 1055 (1858)
|||+|.+++++++.++++|+.|.+..+
T Consensus 193 --SAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 193 --SATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp --ESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred --EeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999987643
No 109
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.95 E-value=1.9e-06 Score=97.80 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=96.4
Q ss_pred CccceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhh-hhhhcccccccccccccC--c
Q psy15269 868 NSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIID-IDKFVRDMRHVSNNILMS--P 944 (1858)
Q Consensus 868 ~~~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~d-l~~~v~~l~~t~~~ll~~--~ 944 (1858)
...+.++-|+|+||.|+-+.+..+.....+. ...+.||.....+... .....++++.||+++++. .
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 166 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFR-----------IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQ 166 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCC-----------EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCce-----------EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHh
Confidence 3457899999999999999888776655542 2334444332222211 223577899999999851 1
Q ss_pred c--ccccccccceeecccchhhhhhHHhhhhhh---cCCCchhhHHHHHHHHHhH-HHHHHHhhhccCCCCccccccccc
Q psy15269 945 N--YESDVNKYSVLLKYIPQQYKNLVYSYLIQQ---TALSPREKTVLEQIFSVVN-KFRAELLSAVSNAPSFDDNNVSMG 1018 (1858)
Q Consensus 945 ~--~~~~~~~~~~lLd~a~r~y~~~~~A~lL~~---mGF~~~~~esL~~Il~~Lp-k~RQtLLf~~~~~~s~~~~~~s~~ 1018 (1858)
. .........+|+|||++ |.+ +||.++ +..|+..+. +.+|.+++
T Consensus 167 ~~~~~~~~~~~~lViDEah~----------~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~---------------- 216 (245)
T 3dkp_A 167 DPPGIDLASVEWLVVDESDK----------LFEDGKTGFRDQ----LASIFLACTSHKVRRAMF---------------- 216 (245)
T ss_dssp SSCSCCCTTCCEEEESSHHH----------HHHHC--CHHHH----HHHHHHHCCCTTCEEEEE----------------
T ss_pred CCCCcccccCcEEEEeChHH----------hcccccccHHHH----HHHHHHhcCCCCcEEEEE----------------
Confidence 1 23445566677888877 776 677777 888876653 34567777
Q ss_pred ccccccccCCCCCCcHhHHHHHHHhcCCCEEEEEccC
Q psy15269 1019 VTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPS 1055 (1858)
Q Consensus 1019 ~~~~~~~~~eSAT~p~~I~~la~~~L~dpv~I~v~~~ 1055 (1858)
|||+|++++++++.++++|+.|.++.+
T Consensus 217 ----------SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 217 ----------SATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp ----------ESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ----------eccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999998754
No 110
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.76 E-value=3.4e-06 Score=93.93 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=101.8
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhh-hccccccccccccc--Cccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDK-FVRDMRHVSNNILM--SPNY 946 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~-~v~~l~~t~~~ll~--~~~~ 946 (1858)
.+.++-|+|+|+.|+-+.+..+....| -++...+.||.....+...+.+ ..++++.||.+++. ....
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~----------~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~ 153 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMP----------NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 153 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTST----------TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCC----------CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC
Confidence 468999999999999888776655432 1344677888877777777766 36889999999885 2222
Q ss_pred cccccccceeecccchhhhhhHHhhhhhh-cCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccc
Q psy15269 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025 (1858)
Q Consensus 947 ~~~~~~~~~lLd~a~r~y~~~~~A~lL~~-mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~ 1025 (1858)
........+|+|||++ +.+ .||..+ +..|++.+++.+|.+++
T Consensus 154 ~~~~~~~~lViDEah~----------~~~~~~~~~~----~~~i~~~~~~~~~~i~~----------------------- 196 (220)
T 1t6n_A 154 LNLKHIKHFILDECDK----------MLEQLDMRRD----VQEIFRMTPHEKQVMMF----------------------- 196 (220)
T ss_dssp SCCTTCCEEEEESHHH----------HHSSHHHHHH----HHHHHHTSCSSSEEEEE-----------------------
T ss_pred CCcccCCEEEEcCHHH----------HhcccCcHHH----HHHHHHhCCCcCeEEEE-----------------------
Confidence 3334456677888877 554 677777 88888888877888888
Q ss_pred cCCCCCCcHhHHHHHHHhcCCCEEEEE
Q psy15269 1026 STDSLFSWGDIEEESNIEVEDPIMKLV 1052 (1858)
Q Consensus 1026 ~~eSAT~p~~I~~la~~~L~dpv~I~v 1052 (1858)
|||+|.+++++++.++++|+.|.+
T Consensus 197 ---SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 197 ---SATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp ---ESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred ---EeecCHHHHHHHHHHcCCCeEEeC
Confidence 999999999999999999998753
No 111
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.24 E-value=0.003 Score=83.05 Aligned_cols=80 Identities=6% Similarity=-0.044 Sum_probs=61.5
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhccccccccccc-cc----Cc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI-LM----SP 944 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~l-l~----~~ 944 (1858)
.+.++.|+|+||.++...++.+.....++ ..++.||+. .+.+.....++++++||+++ +| ..
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lGLs-----------v~~i~Gg~~--~~~r~~ay~~DIvyGTpgrlgfDyLrd~m 188 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLGLS-----------VGVIQHAST--PAERRKAYLADVTYVTNSELGFDYLRDNM 188 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTTCC-----------EEECCTTCC--HHHHHHHHTSSEEEEEHHHHHHHHHHHTS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcCCe-----------EEEEeCCCC--HHHHHHHcCCCEEEECchhhhhHHHHHhh
Confidence 47899999999999999999988888774 467899976 56666666899999999999 43 21
Q ss_pred ----cccccc---cccceeecccch
Q psy15269 945 ----NYESDV---NKYSVLLKYIPQ 962 (1858)
Q Consensus 945 ----~~~~~~---~~~~~lLd~a~r 962 (1858)
+..... ....+|+||||+
T Consensus 189 ~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 189 AISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp CSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred hcchhhcccccCCCcceEEEechHH
Confidence 112223 567788999987
No 112
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.00098 Score=84.86 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=53.5
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEE--eccccccCCCCCC----cce
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVI--MTLSDFIGNDFTN----VEQ 1156 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILV--ATDVAARGLDIp~----V~~ 1156 (1858)
++++||++|++..+.+++.|+. ++ ...+|.. .+|.+++++|+++. .||+ +|+.+++|||+++ +++
T Consensus 385 g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~-----~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 385 KSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK-----TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp SEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT-----CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred CCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC-----CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 7899999999999999998875 33 4556654 25888999999864 6777 8999999999998 999
Q ss_pred EEEcCCCCCh-hhhhh
Q psy15269 1157 VIIYNLPLSI-NHYVF 1171 (1858)
Q Consensus 1157 VINyDlP~~~-e~YIH 1171 (1858)
||++++|... ++.++
T Consensus 456 Vii~~lPf~~~~d~~~ 471 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMV 471 (540)
T ss_dssp EEEESCCCCCTTSHHH
T ss_pred EEEECCCCCCCCCHHH
Confidence 9999999654 35544
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.73 E-value=4.1 Score=48.97 Aligned_cols=238 Identities=10% Similarity=0.110 Sum_probs=132.7
Q ss_pred CCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCC
Q psy15269 219 SNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEH 298 (1858)
Q Consensus 219 ~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~ 298 (1858)
..|..++......+.-..||.|..|-.. .+. ....+. .....|..++......+.-+.||.|+.|-....
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~---~~~-----~~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVN---TGE-----MLNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESS---SCC-----EEEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECC---CCc-----EEEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCC
Confidence 3688888866666667789999999421 110 001111 112234555556667777788999999965432
Q ss_pred CCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEE
Q psy15269 299 GKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAV 377 (1858)
Q Consensus 299 GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~I 377 (1858)
... .+..... .....|..++....+.+.-+.||.|..|-... +++ ...+. ....|..+
T Consensus 244 ~~~---------~~~~~~~-~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~----------~~~~~~~~~~v~~~ 302 (435)
T 1p22_A 244 TDI---------TLRRVLV-GHRAAVNVVDFDDKYIVSASGDRTIKVWNTST-CEF----------VRTLNGHKRGIACL 302 (435)
T ss_dssp SCC---------EEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTT-CCE----------EEEEECCSSCEEEE
T ss_pred CCc---------eeeeEec-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCc-CcE----------EEEEcCCCCcEEEE
Confidence 110 0111111 23346778887777888888899999996432 110 01111 12236666
Q ss_pred eecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCC--
Q psy15269 378 SCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRS-- 455 (1858)
Q Consensus 378 AcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gs-- 455 (1858)
+......+.-..+|. |..|-... |+. ...+. .....|..++....+.+.-..||.|..|-+..+.
T Consensus 303 ~~~~~~l~~g~~dg~-i~iwd~~~-~~~----------~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 303 QYRDRLVVSGSSDNT-IRLWDIEC-GAC----------LRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp EEETTEEEEEETTSC-EEEEETTT-CCE----------EEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTST
T ss_pred EeCCCEEEEEeCCCe-EEEEECCC-CCE----------EEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCc
Confidence 666677777778885 99986432 110 11111 1223477777777777777889999999821111
Q ss_pred CCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 456 SSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 456 s~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
.......+.....-....|..++..+.+.+.-..||.|..|-..+
T Consensus 370 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 370 RAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred cccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 000000011111112335777777666666666799999998755
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.69 E-value=10 Score=45.55 Aligned_cols=229 Identities=9% Similarity=0.105 Sum_probs=134.2
Q ss_pred CeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCC
Q psy15269 220 NIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299 (1858)
Q Consensus 220 ~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~G 299 (1858)
.|..++..+...+.-..||.|..|-.. .+ .....+. .....|..++......+.-+.||.|..|-....-
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~--~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKN---TL-----ECKRILT--GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESS---SC-----CEEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCC---CC-----eEEEEEc--CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc
Confidence 577777767777777889999999421 00 0011111 1122345555555666666789999999654321
Q ss_pred CcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccc-ccCCCceEEe
Q psy15269 300 KLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV-TELSDVGAVS 378 (1858)
Q Consensus 300 QLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V-~~l~~I~~IA 378 (1858)
. ...+. .....|..++......+.-+.||.|+.|-....... .....+ .....|..++
T Consensus 205 ~-----------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 205 M-----------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--------TLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp E-----------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC--------EEEEEECCCSSCEEEEE
T ss_pred E-----------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc--------eeeeEecCCCCcEEEEE
Confidence 0 11111 133468888887778888889999999964321110 000111 1123466777
Q ss_pred ecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCc
Q psy15269 379 CGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSI 458 (1858)
Q Consensus 379 cG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~ 458 (1858)
....+.+.-..+| +|..|-.... + ....+. .....|..+.......+.-..||.|..|-...+.
T Consensus 264 ~~~~~l~s~~~dg-~i~vwd~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~--- 327 (435)
T 1p22_A 264 FDDKYIVSASGDR-TIKVWNTSTC-E----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--- 327 (435)
T ss_dssp EETTEEEEEETTS-EEEEEETTTC-C----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC---
T ss_pred eCCCEEEEEeCCC-eEEEEECCcC-c----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC---
Confidence 7677777777888 5999964321 1 011111 1223466777777777888889999999843221
Q ss_pred cccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCC
Q psy15269 459 SFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 459 ~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N 499 (1858)
....+. .....|..++..+.+.+.-..||.|..|-..
T Consensus 328 ---~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 328 ---CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp ---EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred ---EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 111122 1234688888876776667779999999753
No 115
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.47 E-value=17 Score=43.61 Aligned_cols=254 Identities=10% Similarity=0.076 Sum_probs=145.3
Q ss_pred eeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeec
Q psy15269 184 SVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVP 263 (1858)
Q Consensus 184 a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~ 263 (1858)
+..++.|..|-......+ -........|..++......+.-..||.|+.|-.. .+. ....+.
T Consensus 135 g~~dg~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~---~~~-----~~~~~~ 196 (445)
T 2ovr_B 135 GSDDNTLKVWSAVTGKCL----------RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE---TGE-----CIHTLY 196 (445)
T ss_dssp EETTSCEEEEETTTCCEE----------EECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT---TTE-----EEEEEC
T ss_pred EECCCcEEEEECCCCcEE----------EEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECC---cCc-----EEEEEC
Confidence 346788889864321111 01111233577887777777777889999999421 110 001111
Q ss_pred CccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeE
Q psy15269 264 LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLL 343 (1858)
Q Consensus 264 ~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~V 343 (1858)
.....|..++......+.-+.||.|+.|-...... ...+. .....|..++......+.-+.+|.|
T Consensus 197 --~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 197 --GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC-----------LHVLM--GHVAAVRCVQYDGRRVVSGAYDFMV 261 (445)
T ss_dssp --CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE-----------EEEEE--CCSSCEEEEEECSSCEEEEETTSCE
T ss_pred --CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE-----------EEEEc--CCcccEEEEEECCCEEEEEcCCCEE
Confidence 11123444445566777778899999996543111 11111 1234577777777777777889999
Q ss_pred EEEecCCCCCCCCCCCCccccccccc-cCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec
Q psy15269 344 YTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422 (1858)
Q Consensus 344 YtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l 422 (1858)
+.|-... ++ ....+. ....|..++....+.+.-..+|. |..|-.... +. ...+. .
T Consensus 262 ~iwd~~~-~~----------~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~-i~i~d~~~~-~~----------~~~~~-~ 317 (445)
T 2ovr_B 262 KVWDPET-ET----------CLHTLQGHTNRVYSLQFDGIHVVSGSLDTS-IRVWDVETG-NC----------IHTLT-G 317 (445)
T ss_dssp EEEEGGG-TE----------EEEEECCCSSCEEEEEECSSEEEEEETTSC-EEEEETTTC-CE----------EEEEC-C
T ss_pred EEEECCC-Cc----------EeEEecCCCCceEEEEECCCEEEEEeCCCe-EEEEECCCC-CE----------EEEEc-C
Confidence 9995432 10 000111 12246677776677777778885 998864331 10 01111 1
Q ss_pred ccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecC--CCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 423 RKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTG--LSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 423 ~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~--l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
....+..+.......+.-..||.|+.|-+..+. ....+.. .....|..++....+.+.-..||.|..|-...
T Consensus 318 ~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp CCSCEEEEEEETTEEEEEETTSCEEEEETTTCC------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 123456666666777777889999999843221 1122222 12346888888777777777899999998653
No 116
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.76 E-value=21 Score=42.76 Aligned_cols=223 Identities=11% Similarity=0.081 Sum_probs=127.1
Q ss_pred EEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 222 RHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 222 kqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
..++..+...+.-..||.|..|-.. .+. ....+. .....|..++......+.-..||.|+.|-.... +
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~---~~~-----~~~~~~--~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~- 190 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAV---TGK-----CLRTLV--GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E- 190 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETT---TCC-----EEEECC--CCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E-
T ss_pred EEEEEcCCEEEEEECCCcEEEEECC---CCc-----EEEEEc--CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c-
Confidence 3444445555666789999999521 110 001111 111223334444566667778999999965321 1
Q ss_pred CCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEEeec
Q psy15269 302 GHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVSCG 380 (1858)
Q Consensus 302 G~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IAcG 380 (1858)
....+. .....|..++......+.-+.||.|+.|-... ++. ...+. ....|..++..
T Consensus 191 ---------~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~----------~~~~~~~~~~v~~~~~~ 248 (445)
T 2ovr_B 191 ---------CIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIET-GQC----------LHVLMGHVAAVRCVQYD 248 (445)
T ss_dssp ---------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSS-CCE----------EEEEECCSSCEEEEEEC
T ss_pred ---------EEEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCC-CcE----------EEEEcCCcccEEEEEEC
Confidence 111111 13345777777777788888899999996432 110 00111 12236666666
Q ss_pred CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec--ccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCc
Q psy15269 381 ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL--RKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSI 458 (1858)
Q Consensus 381 ~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~ 458 (1858)
....++-..+|. |..|-... ...+..+ ....|..+.....+.+.-..||.++.|-...+..
T Consensus 249 ~~~l~~~~~dg~-i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-- 311 (445)
T 2ovr_B 249 GRRVVSGAYDFM-VKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-- 311 (445)
T ss_dssp SSCEEEEETTSC-EEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--
T ss_pred CCEEEEEcCCCE-EEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE--
Confidence 666667777885 88885322 1111111 2235777777777777778899999997432210
Q ss_pred cccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 459 SFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 459 ~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
...+. .....+..++......+.-..||.|+.|-...
T Consensus 312 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 312 ----IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp ----EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ----EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCC
Confidence 11111 12345777777777777777899999997643
No 117
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.47 E-value=17 Score=40.89 Aligned_cols=305 Identities=7% Similarity=-0.032 Sum_probs=141.1
Q ss_pred eeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcC-CEEEEEecCCcEEEEcccccCCCCCCCCCCceee
Q psy15269 184 SVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQ-FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV 262 (1858)
Q Consensus 184 a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~-~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V 262 (1858)
...+|+.++++....+.+...................|..++... ...++...||.|..|-.. .+... .....+
T Consensus 17 ~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~---~~~~~--~~~~~~ 91 (337)
T 1gxr_A 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS---HPGNK--SPVSQL 91 (337)
T ss_dssp ECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT---STTCC--SCSEEE
T ss_pred ECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC---CCCce--eeeecc
Confidence 346788888886544333222111111111122234566666543 223333448888888422 11100 001111
Q ss_pred cCccCcceEEEEE--ecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEE
Q psy15269 263 PLEAAIVSLSVSK--CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVT 338 (1858)
Q Consensus 263 ~~~~~i~~Is~Ia--~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT 338 (1858)
........|..++ ......++-..+|.|+.|-..... ......+. .....|..++.. ..+.+.-+
T Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELT--SSAPACYALAISPDSKVCFSCC 160 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEE--CSSSCEEEEEECTTSSEEEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeecc--cCCCceEEEEECCCCCEEEEEe
Confidence 1111112233222 233445555678999999653211 00011111 123346666543 34556667
Q ss_pred eCCeEEEEecCCCCCCCCCCCCcccccccccc-CCCceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceec
Q psy15269 339 EDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LSDVGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTT 415 (1858)
Q Consensus 339 ~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~~I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~ 415 (1858)
.+|.|+.|-.... + ....+.. ...|..++.. ....+....+| .|+.|-..... .
T Consensus 161 ~dg~v~~~d~~~~-~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~-----------~ 217 (337)
T 1gxr_A 161 SDGNIAVWDLHNQ-T----------LVRQFQGHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGR-----------Q 217 (337)
T ss_dssp TTSCEEEEETTTT-E----------EEEEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEEETTTTE-----------E
T ss_pred CCCcEEEEeCCCC-c----------eeeeeecccCceEEEEECCCCCEEEEEecCC-cEEEEECCCCc-----------e
Confidence 7899999964321 1 0111111 1235555443 33444555677 58888543211 0
Q ss_pred cEEeeecccccEEEEEe--cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEc--CceEEEEEeCC
Q psy15269 416 PKVIEALRKFRVRKVCA--GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIG--DSHVLALSQYN 491 (1858)
Q Consensus 416 P~~V~~l~~~~Iv~Iaa--G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G--~~HtlALt~dG 491 (1858)
...+. ....+..++. .....++-+.+|.++.|-...+. ...+.. ....|..++.. +...+.-..+|
T Consensus 218 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 218 LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHL-HESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcC-CccceeEEEECCCCCEEEEecCCC
Confidence 01111 1223444443 23455555678889998733221 112221 23467777776 33445555689
Q ss_pred eEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 492 EVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 492 ~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
.++.|-......+ ... .....|..++...+..++++. ..||.+..|
T Consensus 288 ~i~~~~~~~~~~~-------------~~~-~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw 333 (337)
T 1gxr_A 288 LLNAWRTPYGASI-------------FQS-KESSSVLSCDISVDDKYIVTG-SGDKKATVY 333 (337)
T ss_dssp EEEEEETTTCCEE-------------EEE-ECSSCEEEEEECTTSCEEEEE-ETTSCEEEE
T ss_pred cEEEEECCCCeEE-------------EEe-cCCCcEEEEEECCCCCEEEEe-cCCCeEEEE
Confidence 9999976432111 111 112345666555444444432 267888877
No 118
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.97 E-value=0.013 Score=66.11 Aligned_cols=121 Identities=12% Similarity=-0.075 Sum_probs=74.4
Q ss_pred cceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCcccccc
Q psy15269 870 FLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESD 949 (1858)
Q Consensus 870 ~~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~ 949 (1858)
.+.++.|+|++|.++...+...... ++. ...| ..+..+........++++.||+++++.... ..
T Consensus 111 ~~l~~~p~~~la~q~~~~~~~~~~~-~~~-------------~~~g-~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l 174 (235)
T 3llm_A 111 NIVVTQPRRISAVSVAERVAFERGE-EPG-------------KSCG-YSVRFESILPRPHASIMFCTVGVLLRKLEA-GI 174 (235)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTTC-CTT-------------SSEE-EEETTEEECCCSSSEEEEEEHHHHHHHHHH-CC
T ss_pred EEEEeccchHHHHHHHHHHHHHhcc-ccC-------------ceEE-EeechhhccCCCCCeEEEECHHHHHHHHHh-hh
Confidence 4578899999999997766433221 110 0011 111111111113466889999999863322 35
Q ss_pred ccccceeecccchhhhhhHHhhhh-hhcCCCchhhHHHHHHHHHhHHHHHHHhhhccCCCCcccccccccccccccccCC
Q psy15269 950 VNKYSVLLKYIPQQYKNLVYSYLI-QQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTD 1028 (1858)
Q Consensus 950 ~~~~~~lLd~a~r~y~~~~~A~lL-~~mGF~~~~~esL~~Il~~Lpk~RQtLLf~~~~~~s~~~~~~s~~~~~~~~~~~e 1028 (1858)
.....+|+|||++ + .+++|... .++.|+...+ .+|++++
T Consensus 175 ~~~~~lVlDEah~----------~~~~~~~~~~---~l~~i~~~~~-~~~~il~-------------------------- 214 (235)
T 3llm_A 175 RGISHVIVDEIHE----------RDINTDFLLV---VLRDVVQAYP-EVRIVLM-------------------------- 214 (235)
T ss_dssp TTCCEEEECCTTS----------CCHHHHHHHH---HHHHHHHHCT-TSEEEEE--------------------------
T ss_pred cCCcEEEEECCcc----------CCcchHHHHH---HHHHHHhhCC-CCeEEEE--------------------------
Confidence 5667788999987 4 66666632 2666666554 4667888
Q ss_pred CCCCcHhHHHHHHHhcCCCE
Q psy15269 1029 SLFSWGDIEEESNIEVEDPI 1048 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv 1048 (1858)
|||+|.+. +++.+..+|+
T Consensus 215 SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 215 SATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECSSCCHH--HHHHTTSCCC
T ss_pred ecCCCHHH--HHHHcCCCCE
Confidence 99999887 7777777775
No 119
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.76 E-value=12 Score=49.05 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=69.3
Q ss_pred CceEEEEEe-CCeEEEEecCCCCCCCCCCCC----ccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCC
Q psy15269 331 HSHSAAVTE-DGLLYTWGEGDHGRLGHGDLK----SRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL 405 (1858)
Q Consensus 331 ~~HS~aLT~-dG~VYtWG~N~~GQLG~G~~~----~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQL 405 (1858)
..|+++... +|++|++|-.....-...+.. .......+..++ ..-..|+.++..+|+ +|++|-.....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-----~~R~~h~~~~~~~~~-iyv~GG~~~~~- 513 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-----HTRFRHSACSLPDGN-VLILGGVTEGP- 513 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-----BCCBSCEEEECTTSC-EEEECCBCSSC-
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-----CCcccceEEEEcCCE-EEEECCCCCCC-
Confidence 468888776 899999984221110011100 000111111111 133468877766886 99998432111
Q ss_pred CCCCCCceeccEEeeecccccEEEEEe-------cCceE-EEEecC-CcEEEEeCCCCCCCccccccEEecCCCCCC---
Q psy15269 406 GHEDTGKVTTPKVIEALRKFRVRKVCA-------GTSFS-VALTWD-GLVFWWGLGLRSSSISFHTPVLVTGLSSHQ--- 473 (1858)
Q Consensus 406 G~g~~~~~~~P~~V~~l~~~~Iv~Iaa-------G~~hS-lALT~d-G~Vy~WGLG~gss~~~~~~P~~V~~l~~~~--- 473 (1858)
. ..+-.+.......+.. -..|+ +++..+ |++|++| |..........-..+-.+....
T Consensus 514 ----~------v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G-G~~~~~~~~~~~v~~yd~~~~~w~~ 582 (695)
T 2zwa_A 514 ----A------MLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG-GGFMDQTTVSDKAIIFKYDAENATE 582 (695)
T ss_dssp ----S------EEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC-CBCTTSSCBCCEEEEEEECTTCSSC
T ss_pred ----C------EEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC-CcCCCCCeeeCcEEEEEccCCcccc
Confidence 0 0111111112222221 22445 444555 8999999 2211100001111111111222
Q ss_pred ---EEEEEE-----cCceEEEEEeCCeEEEEeCC
Q psy15269 474 ---IVDVSI-----GDSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 474 ---Iv~Ia~-----G~~HtlALt~dG~VYaWG~N 499 (1858)
...+.. -..|+++...+|++|.+|-.
T Consensus 583 ~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 583 PITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CEEEEEEEECGGGCCBSCEEEEEETTEEEEECCB
T ss_pred ceEEEEcCCCCCCCcccceEEEeCCCEEEEECCc
Confidence 444433 25677777766999999953
No 120
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.98 E-value=33 Score=39.65 Aligned_cols=292 Identities=9% Similarity=0.003 Sum_probs=132.7
Q ss_pred CeEEEEEcC---CEEEEEecCCcEEEEcccccCCCCCCCCCCcee---ecC---ccCcceEEEEEe---cCcEEEEEeeC
Q psy15269 220 NIRHIEAGQ---FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKR---VPL---EAAIVSLSVSKC---SEAHVLTVTSE 287 (1858)
Q Consensus 220 ~IkqVA~G~---~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~---V~~---~~~i~~Is~Ia~---G~~HtlaLT~d 287 (1858)
.|..++... ...+.-..||.|..|-.. .+.......... ... ......|..++. +....+.-..+
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLE---NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECC---CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECC---CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 577777643 344445678999999532 111110000000 000 011223333333 44456666779
Q ss_pred CcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC-----ceEEEEEeCCeEEEEecCCCCCCCCCCCCcc
Q psy15269 288 GEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH-----SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSR 362 (1858)
Q Consensus 288 G~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~-----~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~ 362 (1858)
|.|..|-..... +..... ....+..+.... ...++-+.+|.|+.|-......+
T Consensus 122 ~~i~iwd~~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-------- 179 (408)
T 4a11_B 122 KTLKVWDTNTLQ------------TADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-------- 179 (408)
T ss_dssp SEEEEEETTTTE------------EEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--------
T ss_pred CeEEEeeCCCCc------------cceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--------
Confidence 999999654311 111110 122344444322 24566678899999965321110
Q ss_pred cccccccc-CCCceEEeecCc--e-EEEEEcCCCEEEEEeCCCCCCC-CCC---CCCceeccEEeeecccccEEEEEec-
Q psy15269 363 HTPTLVTE-LSDVGAVSCGES--H-TLVLSQDGHTVWSMGSGNLGKL-GHE---DTGKVTTPKVIEALRKFRVRKVCAG- 433 (1858)
Q Consensus 363 ~~P~~V~~-l~~I~~IAcG~~--H-TlaLt~dG~tVysWG~N~~GQL-G~g---~~~~~~~P~~V~~l~~~~Iv~IaaG- 433 (1858)
..+.. ...|..++.... + .+.-..+|. |+.|-....... -.- .......+..........|..++..
T Consensus 180 ---~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 180 ---HILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp ---EEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred ---eeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 11111 123555554432 2 445567885 999965432210 000 0000000000001122346666554
Q ss_pred -CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 434 -TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 434 -~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
..+.+....+|.++.|-+..+...................+..........++...+|.|+.|-....-
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------- 325 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE---------- 325 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC----------
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc----------
Confidence 345666678999999984332211110000000011111222222234455566678999999864311
Q ss_pred cccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeecc
Q psy15269 513 VDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 513 vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG~ 554 (1858)
+.....-....|..++...+..++++. ..||.+..|--
T Consensus 326 ---~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~ 363 (408)
T 4a11_B 326 ---QITMLKGHYKTVDCCVFQSNFQELYSG-SRDCNILAWVP 363 (408)
T ss_dssp ---EEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEE
T ss_pred ---ceeeeccCCCeEEEEEEcCCCCEEEEE-CCCCeEEEEeC
Confidence 111111122346666666555544442 37899999943
No 121
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.42 E-value=7.6 Score=50.75 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred CcEEEEEee-CCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEE----ecCceEEEEEeCCeEEEEec
Q psy15269 278 EAHVLTVTS-EGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVS----AGHSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 278 ~~HtlaLT~-dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa----~G~~HS~aLT~dG~VYtWG~ 348 (1858)
..|+++... +|++|.+|-.....-...+. .+.. ........+. .-..|++++-.+|+||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv-------~~yd-~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDN-------WIFD-MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTCBCCCC-------EEEE-TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECC
T ss_pred cceEEEEEccCCEEEEEcCCCCCCCccccE-------EEEe-CCCCcEEECCCCCCCcccceEEEEcCCEEEEECC
Confidence 468877776 99999998532211000110 0000 1111222221 23567777755899999984
No 122
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.13 E-value=20 Score=46.17 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=38.4
Q ss_pred CceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEE----ecCcceEEEeecCCCCcEEeeccCc
Q psy15269 481 DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC----AGSLFSIAYTVPPSNSALSSAFTPL 556 (1858)
Q Consensus 481 ~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia----~G~~hS~alt~~~~dG~vy~WG~n~ 556 (1858)
..|++++..+|+||..|-...+....+ ..+...+.... +...+...+. .-.+|+.++.. .||++|..|.+.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~--~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll--~dg~v~v~GG~~ 531 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLL--PDGRVFNGGGGL 531 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCC--CSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEEC--TTSCEEEEECCC
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCC--CCcccceEEEc-CCCCceeecCCCCCccccccHhhcC--CCcEEEecCCCC
Confidence 357777777999999997554431111 11111222211 1112222221 23467765432 689999998865
Q ss_pred cc
Q psy15269 557 CV 558 (1858)
Q Consensus 557 ~g 558 (1858)
++
T Consensus 532 ~~ 533 (656)
T 1k3i_A 532 CG 533 (656)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 123
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=88.06 E-value=0.55 Score=53.11 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=55.9
Q ss_pred CcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCC
Q psy15269 322 KRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGN 401 (1858)
Q Consensus 322 ~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~ 401 (1858)
..|.+|+-.+.|.+++--++++|.+|+|++||+-.... -....++++|.++++-+..-+. |-.||+.-
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-----------agPfla~~AG~~fTVTVn~~ny-v~FWGDSP 376 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-----------AGPYIQLAAGHNFTVTVNTLNQ-VMFWGDSP 376 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-----------GCCEEEEEECSSEEEEEETTCC-EEEEECCT
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-----------cchHHhHhccCCeEEEEeceee-EEEecCCC
Confidence 45778888899999999999999999999999833221 1237899999999999999995 99999754
Q ss_pred C
Q psy15269 402 L 402 (1858)
Q Consensus 402 ~ 402 (1858)
.
T Consensus 377 D 377 (400)
T 4gbf_A 377 D 377 (400)
T ss_dssp T
T ss_pred C
Confidence 3
No 124
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=87.20 E-value=19 Score=46.34 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=36.1
Q ss_pred ceEEEEecCCcEEEEe-C--CCCCC-CccccccEEecCCCCCCEEEEE----EcCceEEE-EEeCCeEEEEeCCCCCCC
Q psy15269 435 SFSVALTWDGLVFWWG-L--GLRSS-SISFHTPVLVTGLSSHQIVDVS----IGDSHVLA-LSQYNEVYAWGSNTMGQC 504 (1858)
Q Consensus 435 ~hSlALT~dG~Vy~WG-L--G~gss-~~~~~~P~~V~~l~~~~Iv~Ia----~G~~HtlA-Lt~dG~VYaWG~N~~GQL 504 (1858)
.|++++..+|++|+.| . +.+.. ......+... .+.......+. .-..|+.+ +..+|+||..|.+.+|.+
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y-dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~ 535 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY-VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDC 535 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE-EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE-cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCC
Confidence 5777777899999999 1 11100 0111111111 11112232222 12457654 457999999999876643
No 125
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=86.77 E-value=0.53 Score=60.94 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc--ccccCCCCCC--cceE
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL--SDFIGNDFTN--VEQV 1157 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD--VAARGLDIp~--V~~V 1157 (1858)
.+.++||+++.+..+.+++.|+..+.+ ..-+++ ..+|...+++|+ ++-.||+++. ..+.|||+++ ...|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~~~~~---~~q~~~---~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSFEHMK---EYRGID---QKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCSCCEE---CCTTCC---SHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcchh---ccCCCC---hhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEE
Confidence 378999999999999999988732222 334444 678999999999 8889999986 9999999976 6689
Q ss_pred EEcCCCCC
Q psy15269 1158 IIYNLPLS 1165 (1858)
Q Consensus 1158 INyDlP~~ 1165 (1858)
|-..+|.-
T Consensus 521 iI~~lPfp 528 (620)
T 4a15_A 521 ILAGLPFP 528 (620)
T ss_dssp EESSCCCC
T ss_pred EEEcCCCC
Confidence 98888854
No 126
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=86.50 E-value=1.3 Score=50.06 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=54.9
Q ss_pred ceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEec
Q psy15269 269 VSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 269 ~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~ 348 (1858)
..|..|+....|+.++-.|++++++|+|+.||+-..... -...++.+|.++++-+..-..+-.||+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecC
Confidence 345556678899999999999999999999997643321 237799999999999999999999997
Q ss_pred CC
Q psy15269 349 GD 350 (1858)
Q Consensus 349 N~ 350 (1858)
.-
T Consensus 375 SP 376 (400)
T 4gbf_A 375 SP 376 (400)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 127
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=85.61 E-value=48 Score=36.64 Aligned_cols=267 Identities=12% Similarity=0.055 Sum_probs=134.4
Q ss_pred CeEEEEEc-CCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEEEeCCC
Q psy15269 220 NIRHIEAG-QFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE 297 (1858)
Q Consensus 220 ~IkqVA~G-~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~ 297 (1858)
.|..++.. +...+.-..||.|+.|-.. . ......+.. ...+..+. ........++-..+|.+..|-..+
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~---~-----~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKD---D-----QWLGTVVYTGQGFLNSVC-YDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEES---S-----SEEEEEEEECSSCEEEEE-EETTTTEEEEEETTSCEEEEETTC
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECC---C-----CEEEEEeecCCccEEEEE-ECCCCCEEEEecCCCeEEEEEeee
Confidence 46666652 3344555688999998421 0 001111111 12222232 233445556666778888775533
Q ss_pred CCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceE
Q psy15269 298 HGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGA 376 (1858)
Q Consensus 298 ~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~ 376 (1858)
... ......+. .....|..++......+.-+.+|.|+.|-. ++ . ...+. ....|..
T Consensus 91 ~~~--------~~~~~~~~--~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~~---------~-~~~~~~~~~~v~~ 147 (313)
T 3odt_A 91 TSG--------EDPLYTLI--GHQGNVCSLSFQDGVVISGSWDKTAKVWKE---GS---------L-VYNLQAHNASVWD 147 (313)
T ss_dssp CTT--------SCC-CEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEET---TE---------E-EEEEECCSSCEEE
T ss_pred cCC--------CCcccchh--hcccCEEEEEecCCEEEEEeCCCCEEEEcC---Cc---------E-EEecccCCCceeE
Confidence 210 00011111 233567788777777788888999999941 11 0 00111 1123444
Q ss_pred Eee---cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC-ceEEEEecCCcEEEEeCC
Q psy15269 377 VSC---GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT-SFSVALTWDGLVFWWGLG 452 (1858)
Q Consensus 377 IAc---G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~-~hSlALT~dG~Vy~WGLG 452 (1858)
+.. .....+.-..+|. |+.|-.. .....+.......|..++... ...++-..+|.++.|-..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~-i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKT-IKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH 213 (313)
T ss_dssp EEEEETTTTEEEEEETTSC-EEEEETT-------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEccCCCCEEEEEECCCC-EEEEecC-------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC
Confidence 433 4556666677885 8888411 011111111223344444322 225566788999999743
Q ss_pred CCCCCccccccEEecCCCCCCEEEEEEcCc-eEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEE
Q psy15269 453 LRSSSISFHTPVLVTGLSSHQIVDVSIGDS-HVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC 531 (1858)
Q Consensus 453 ~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~-HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia 531 (1858)
.+. ....+. .....|..++.... ..++-..||.|+.|-.... .+..........|..++
T Consensus 214 ~~~------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 214 TGD------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------SLKQVITLPAISIWSVD 273 (313)
T ss_dssp TCC------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-------------CEEEEEECSSSCEEEEE
T ss_pred chh------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCCC-------------ceeEEEeccCceEEEEE
Confidence 221 111121 12346777777544 4555557899999975431 12222222233577777
Q ss_pred ecCcceEEEeecCCCCcEEeecc
Q psy15269 532 AGSLFSIAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 532 ~G~~hS~alt~~~~dG~vy~WG~ 554 (1858)
.-.+..++.. ..||.++.|-.
T Consensus 274 ~~~~~~~~~~--~~dg~i~iw~~ 294 (313)
T 3odt_A 274 CMSNGDIIVG--SSDNLVRIFSQ 294 (313)
T ss_dssp ECTTSCEEEE--ETTSCEEEEES
T ss_pred EccCCCEEEE--eCCCcEEEEeC
Confidence 6555444433 37899999943
No 128
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=85.02 E-value=3.6 Score=49.03 Aligned_cols=107 Identities=6% Similarity=0.072 Sum_probs=70.1
Q ss_pred hHHHHHHHhhcC--CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccC
Q psy15269 1071 QKIVNLLSFLEG--KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIG 1148 (1858)
Q Consensus 1071 ~Kl~~Ll~lL~~--~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARG 1148 (1858)
.-+..|+..++. .|++||++..+..+-+-.+|...|+....+-|... .+++ +. ++....+.+.|-.+.-|
T Consensus 112 ~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~---~~~~-k~----~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 112 SVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSI---KSAA-AA----NDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC---------------CCSEEEEEEESSCCCT
T ss_pred HHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCch---hhhh-hc----ccCCceEEEEECCCCCC
Confidence 334455555543 79999999999999999999999999999999854 3221 11 23445554445555555
Q ss_pred CC-----CCCcceEEEcCCCCChhh-h------hhhcc-Ccc---eEEEEecC
Q psy15269 1149 ND-----FTNVEQVIIYNLPLSINH-Y------VFQIA-GHK---EAIAFYDP 1185 (1858)
Q Consensus 1149 LD-----Ip~V~~VINyDlP~~~e~-Y------IHRIa-g~~---~aitfvt~ 1185 (1858)
++ ....+.||-||.-+++.. . .||++ |++ ..+-|++.
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 65 688999999999988865 2 35772 322 56777775
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.65 E-value=2.5 Score=56.18 Aligned_cols=75 Identities=20% Similarity=0.108 Sum_probs=63.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc-ccCCCCCCcc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD-FIGNDFTNVE 1155 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA-ARGLDIp~V~ 1155 (1858)
.+.+++|.++|+.-+...++.+++ .|+++..+||+++ ..+|...++++++|+.+|+|+|.-. ...+++.++.
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~---~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~ 492 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATT---PSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLG 492 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSC---HHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCC
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCC---HHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCc
Confidence 357999999999988877777664 4899999999998 9999999999999999999999733 2356778888
Q ss_pred eEE
Q psy15269 1156 QVI 1158 (1858)
Q Consensus 1156 ~VI 1158 (1858)
+||
T Consensus 493 lVV 495 (780)
T 1gm5_A 493 LVI 495 (780)
T ss_dssp EEE
T ss_pred eEE
Confidence 777
No 130
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=82.30 E-value=71 Score=36.03 Aligned_cols=235 Identities=10% Similarity=0.060 Sum_probs=115.1
Q ss_pred CCeEEEEEcCC-----EEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEE
Q psy15269 219 SNIRHIEAGQF-----CTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYS 292 (1858)
Q Consensus 219 ~~IkqVA~G~~-----hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~Vys 292 (1858)
..|..|+.... ..+.-..||.|..|-....+ ......+.. ...+..+. ........+.-+.||.|..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVC-WSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEE-ECTTSSEEEEEETTSEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEE-ECcCCCEEEEEcCCCcEEE
Confidence 46888887654 33334578999988421101 000011111 12222232 2223445666677899999
Q ss_pred EeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cC--ceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccc
Q psy15269 293 WGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GH--SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368 (1858)
Q Consensus 293 WG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~--~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V 368 (1858)
|-..... +.... .....|..++. .. .+.+.-+.||.|+.|-... ++. -..+
T Consensus 113 wd~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~----------~~~~ 167 (368)
T 3mmy_A 113 WDLSSNQ------------AIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-SNP----------MMVL 167 (368)
T ss_dssp EETTTTE------------EEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC-SSC----------SEEE
T ss_pred EEcCCCC------------ceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-CcE----------EEEE
Confidence 9654211 11121 13345777764 32 3345556789999995432 110 0112
Q ss_pred ccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec--ccccEEEEEecCce----EEEEec
Q psy15269 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL--RKFRVRKVCAGTSF----SVALTW 442 (1858)
Q Consensus 369 ~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~Iv~IaaG~~h----SlALT~ 442 (1858)
.....+..+..-....++.+.+|. +..|-...... ....+... ....+..+...... .++-..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 168 QLPERCYCADVIYPMAVVATAERG-LIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp ECSSCEEEEEEETTEEEEEEGGGC-EEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred ecCCCceEEEecCCeeEEEeCCCc-EEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 222345555555666777778885 88886533111 00111111 11223334333332 566678
Q ss_pred CCcEEEEeCCCCCCCccccccEEecCCCC-----------CCEEEEEEcCc--eEEEEEeCCeEEEEeCC
Q psy15269 443 DGLVFWWGLGLRSSSISFHTPVLVTGLSS-----------HQIVDVSIGDS--HVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 443 dG~Vy~WGLG~gss~~~~~~P~~V~~l~~-----------~~Iv~Ia~G~~--HtlALt~dG~VYaWG~N 499 (1858)
+|.+..|-+...... .....+..-.. ..|..++.... +.+.-..||.|+.|-..
T Consensus 237 dg~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 237 EGRVAIHYINPPNPA---KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp TSEEEEEESSCSCHH---HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCcEEEEecCCCCcc---ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 999999984322110 01111111100 14777776533 34444568999999754
No 131
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=78.34 E-value=97 Score=35.16 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=80.2
Q ss_pred CCCcEEEEEec-CceEEEEEeCCe-EEEEecCCCCCCCCCCCCccccccccccC--CCceEEeecCceEEEEEcCCCEEE
Q psy15269 320 YGKRVTQVSAG-HSHSAAVTEDGL-LYTWGEGDHGRLGHGDLKSRHTPTLVTEL--SDVGAVSCGESHTLVLSQDGHTVW 395 (1858)
Q Consensus 320 ~~~~IvqVa~G-~~HS~aLT~dG~-VYtWG~N~~GQLG~G~~~~~~~P~~V~~l--~~I~~IAcG~~HTlaLt~dG~tVy 395 (1858)
.+-++.-..++ ....++++.+|+ ++.|+.... . ......|..+... .++.-...+.....+++.+|+.+|
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEE
Confidence 33445555566 556667777887 566664211 0 0011122222212 224433344566778888898888
Q ss_pred EEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecC-CcE-EEEeC-CCCCCCccccccEEecCCCCC
Q psy15269 396 SMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWD-GLV-FWWGL-GLRSSSISFHTPVLVTGLSSH 472 (1858)
Q Consensus 396 sWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~d-G~V-y~WGL-G~gss~~~~~~P~~V~~l~~~ 472 (1858)
.++... .|..+....+-++.-...+....++++.+ |++ |.++- +... .....|.-+..+.+.
T Consensus 160 ~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--~~l~~~~~~~~~~~G 224 (276)
T 3no2_A 160 SVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG--VQLFFVAQLFPLQNG 224 (276)
T ss_dssp EEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS--CCCSEEEEEEECTTS
T ss_pred EEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC--ccccccccceEcCCC
Confidence 887531 12222223333444334444567778777 764 55541 1111 012234444434343
Q ss_pred CEEEEEE-c---------CceEEEEEeCCeEEEEeCCCCCCCCC
Q psy15269 473 QIVDVSI-G---------DSHVLALSQYNEVYAWGSNTMGQCGQ 506 (1858)
Q Consensus 473 ~Iv~Ia~-G---------~~HtlALt~dG~VYaWG~N~~GQLG~ 506 (1858)
.+.-... | ..+.+.++.+|++ .|-.++....|.
T Consensus 225 ~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 225 GLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp CEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred CEEEEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 4432222 2 2357788888885 555555555554
No 132
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.22 E-value=1.1e+02 Score=35.84 Aligned_cols=266 Identities=12% Similarity=0.066 Sum_probs=129.8
Q ss_pred EEEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecC--ccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCC
Q psy15269 222 RHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL--EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299 (1858)
Q Consensus 222 kqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~--~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~G 299 (1858)
..++......++...||.|+.|-.. .+ .....+.. ...+..+. .+..+.+.++-+.+|.|+.|-.....
T Consensus 97 ~~~~~s~~~l~~~~~d~~v~lw~~~---~~-----~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~ 167 (401)
T 4aez_A 97 NLLDWSNLNVVAVALERNVYVWNAD---SG-----SVSALAETDESTYVASVK-WSHDGSFLSVGLGNGLVDIYDVESQT 167 (401)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETT---TC-----CEEEEEECCTTCCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEeecCCCEEEEECCCeEEEeeCC---CC-----cEeEeeecCCCCCEEEEE-ECCCCCEEEEECCCCeEEEEECcCCe
Confidence 3455555667778899999999531 11 01111111 12222232 22234455566678999999654321
Q ss_pred CcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEEe
Q psy15269 300 KLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVS 378 (1858)
Q Consensus 300 QLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IA 378 (1858)
. ...+. .....|..++......+.-+.+|.|+.|-....+.. ...+. ....|..++
T Consensus 168 ~-----------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 168 K-----------LRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ----------IGTLQGHSSEVCGLA 224 (401)
T ss_dssp E-----------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEECCSSCEEEEE
T ss_pred E-----------EEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce----------eeEEcCCCCCeeEEE
Confidence 1 11111 234567788877777777788999999965422110 01111 112355554
Q ss_pred ec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC--ceEEEEe---cCCcEEEEeC
Q psy15269 379 CG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT--SFSVALT---WDGLVFWWGL 451 (1858)
Q Consensus 379 cG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~--~hSlALT---~dG~Vy~WGL 451 (1858)
.. ..+.+.-..+|. |+.|-.... + +..........|..++... ...++.. .+|.++.|-.
T Consensus 225 ~~~~~~~l~s~~~d~~-v~iwd~~~~-~-----------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 225 WRSDGLQLASGGNDNV-VQIWDARSS-I-----------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp ECTTSSEEEEEETTSC-EEEEETTCS-S-----------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred EcCCCCEEEEEeCCCe-EEEccCCCC-C-----------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 43 334444556784 888864331 0 1110001122344444332 2333332 5899999973
Q ss_pred CCCCCCccccccEEecCCCCCCEEEEEEcCce-EEEEE---eCCeEEEEeCCCCCCCCCCCCCCCcccCe-eeecCCCce
Q psy15269 452 GLRSSSISFHTPVLVTGLSSHQIVDVSIGDSH-VLALS---QYNEVYAWGSNTMGQCGQDNFSNPVDQPS-KVVGLEDVC 526 (1858)
Q Consensus 452 G~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~H-tlALt---~dG~VYaWG~N~~GQLG~G~~~~~vs~P~-~V~~L~~~~ 526 (1858)
..+.. ...+. .+..|..++..... .++.+ .+|.|+.|-...... .+. .+.. ....
T Consensus 292 ~~~~~------~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-----------~~~~~~~~-h~~~ 351 (401)
T 4aez_A 292 ATGAR------VNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-----------TKQVDIPA-HDTR 351 (401)
T ss_dssp TTCCE------EEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-----------EEEEEEEC-CSSC
T ss_pred CCCCE------EEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-----------eeEEEecC-CCCC
Confidence 32211 11111 23457777765332 23332 478888887533100 111 1111 1223
Q ss_pred EEEEEecCcceEEEeecCCCCcEEeec
Q psy15269 527 VRQICAGSLFSIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 527 I~~Ia~G~~hS~alt~~~~dG~vy~WG 553 (1858)
|..++...+..++++. ..||.+..|-
T Consensus 352 v~~~~~s~dg~~l~s~-~~dg~i~iw~ 377 (401)
T 4aez_A 352 VLYSALSPDGRILSTA-ASDENLKFWR 377 (401)
T ss_dssp CCEEEECTTSSEEEEE-CTTSEEEEEE
T ss_pred EEEEEECCCCCEEEEE-eCCCcEEEEE
Confidence 5555555555444442 3688888883
No 133
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.08 E-value=5.5 Score=48.10 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=55.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS 1144 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV 1144 (1858)
...++||.++|+.-+...++.+++ .++.+..+||+.+ ..+|...++.+++++.+|+|+|.-
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMK---KEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSC---HHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCC---hhhHHHHHHHhhcCCCCEEEECHH
Confidence 347899999999999999999988 5889999999998 888889999999999999999974
No 134
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=76.02 E-value=1.2e+02 Score=35.19 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=103.3
Q ss_pred CcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCC
Q psy15269 278 EAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLG 355 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG 355 (1858)
....++-..+|.|..|-......+ ....... .-....|..++.. ..+.+.-..+|.|..|-.+. +++
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~--------~~~~~~~-~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-~~~- 173 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESL--------LVNKFAK-YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-KAV- 173 (357)
T ss_dssp TTEEEEEETTSCEEEC----------------CCCCEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-TEE-
T ss_pred CCCEEEEECCCEEEEeecccccee--------EEEeecc-CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcE-
Confidence 345556667888888843221110 0011110 0122346666554 33445556788999995432 110
Q ss_pred CCCCCcccccccccc-CCCceEEeec---CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEee-ecccccEEEE
Q psy15269 356 HGDLKSRHTPTLVTE-LSDVGAVSCG---ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIE-ALRKFRVRKV 430 (1858)
Q Consensus 356 ~G~~~~~~~P~~V~~-l~~I~~IAcG---~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~-~l~~~~Iv~I 430 (1858)
...+.. ...|..|+.. ....+.-..+|. |..|-... ++.-. .+. ......+..+
T Consensus 174 ---------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~-v~~wd~~~-~~~~~----------~~~~~~~~~~v~~v 232 (357)
T 4g56_B 174 ---------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWDTRK-PKPAT----------RIDFCASDTIPTSV 232 (357)
T ss_dssp ---------EEEECCCSSCEEEEEECTTCSSCEEEEETTSC-EEECCTTS-SSCBC----------BCCCTTCCSCEEEE
T ss_pred ---------EEEEcCCCCCEEEEEEccCCCceeeeeccCCc-eEEEECCC-Cceee----------eeeeccccccccch
Confidence 011111 1235556542 223445567784 88884322 11100 000 0112235555
Q ss_pred Eec---CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcC---ceEEEEEeCCeEEEEeCCCCCCC
Q psy15269 431 CAG---TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGD---SHVLALSQYNEVYAWGSNTMGQC 504 (1858)
Q Consensus 431 aaG---~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~---~HtlALt~dG~VYaWG~N~~GQL 504 (1858)
+.. ....+.-..+|.|+.|-+..+. ....+. .....|..++... ...+.-..||.|+.|-.+. |+
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~------~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~~- 303 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKNPD------SAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF-SE- 303 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSCGG------GCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS-CE-
T ss_pred hhhhcccceEEEeecccceeEEECCCCc------EeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-Cc-
Confidence 543 2333334678999999743221 111222 2234688887643 2333345689999995432 21
Q ss_pred CCCCCCCCcccCeeeecCCCceEEEEEecC-cceEEEeecCCCCcEEeecc
Q psy15269 505 GQDNFSNPVDQPSKVVGLEDVCVRQICAGS-LFSIAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 505 G~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~-~hS~alt~~~~dG~vy~WG~ 554 (1858)
...... ....|..|+-.. +..++.+ ...||.|..|--
T Consensus 304 -----------~~~~~~-H~~~V~~vafsP~d~~~l~s-~s~Dg~v~iW~~ 341 (357)
T 4g56_B 304 -----------VFRDLS-HRDFVTGVAWSPLDHSKFTT-VGWDHKVLHHHL 341 (357)
T ss_dssp -----------EEEECC-CSSCEEEEEECSSSTTEEEE-EETTSCEEEEEC
T ss_pred -----------EeEECC-CCCCEEEEEEeCCCCCEEEE-EcCCCeEEEEEC
Confidence 111111 123467776553 3444443 247999999943
No 135
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=75.85 E-value=1.6e+02 Score=40.35 Aligned_cols=185 Identities=15% Similarity=0.114 Sum_probs=85.9
Q ss_pred cCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec-CceEEEEEeCCeEEEEecCCCCCCC
Q psy15269 277 SEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG-HSHSAAVTEDGLLYTWGEGDHGRLG 355 (1858)
Q Consensus 277 G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G-~~HS~aLT~dG~VYtWG~N~~GQLG 355 (1858)
.+...+.-..||.|+.|-....... ... .....|..++.. ....++.+.+|.|+.|-... |++
T Consensus 1014 dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~- 1077 (1249)
T 3sfz_A 1014 DGKTLISSSEDSVIQVWNWQTGDYV------------FLQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRI- 1077 (1249)
T ss_dssp SSSCEEEECSSSBEEEEETTTTEEE------------CCB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCC-
T ss_pred CCCEEEEEcCCCEEEEEECCCCceE------------EEe--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-Cce-
Confidence 3344555567899999965431110 011 122345555543 34556667889999996532 211
Q ss_pred CCCCCcccccccccc-CCCceEEee--cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe
Q psy15269 356 HGDLKSRHTPTLVTE-LSDVGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA 432 (1858)
Q Consensus 356 ~G~~~~~~~P~~V~~-l~~I~~IAc--G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa 432 (1858)
...+.. ...|..++. .....+.-..+|. |+.|-......+.. +.. ....|..++.
T Consensus 1078 ---------~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~-v~iwd~~~~~~~~~-----------l~~-h~~~v~~~~~ 1135 (1249)
T 3sfz_A 1078 ---------ERDFTCHQGTVLSCAISSDATKFSSTSADKT-AKIWSFDLLSPLHE-----------LKG-HNGCVRCSAF 1135 (1249)
T ss_dssp ---------CEEEECCSSCCCCEEECSSSSSCEEECCSSC-CCEECSSSSSCSBC-----------CCC-CSSCEEEEEE
T ss_pred ---------eEEEcccCCcEEEEEECCCCCEEEEEcCCCc-EEEEECCCcceeee-----------ecc-CCCcEEEEEE
Confidence 001111 112333322 2223344455663 77775432111110 000 1123555544
Q ss_pred cC--ceEEEEecCCcEEEEeCCCCCCCccccccEEe---cCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 433 GT--SFSVALTWDGLVFWWGLGLRSSSISFHTPVLV---TGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 433 G~--~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V---~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
.. ...+.-..||.|+.|-+..+...... .|... .......|..++...+...+++.+|.|+.|-...
T Consensus 1136 s~dg~~lat~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1136 SLDGILLATGDDNGEIRIWNVSDGQLLHSC-APISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT 1207 (1249)
T ss_dssp CSSSSEEEEEETTSCCCEEESSSSCCCCCC-CCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCSSS
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCceEEEe-ccccccccccccCceEEEEEECCCCCEEEECCCeEEEEECCC
Confidence 33 34444567899999984433221111 11110 0112235666766655544455568888887544
No 136
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=74.26 E-value=4.9 Score=55.41 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc-----ccCCCCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD-----FIGNDFTN 1153 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA-----ARGLDIp~ 1153 (1858)
+.++||.++|+.-|..+++.+++ .++.+..+||+.+ ..+|...++.+++|..+|+|+|.-. .+ ++..+
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~---~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~ 196 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMK---KEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKR 196 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCC---TTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSC
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCC---HHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccC
Confidence 47899999999999999999998 5789999999998 8888899999999999999999632 12 44567
Q ss_pred cceEEE
Q psy15269 1154 VEQVII 1159 (1858)
Q Consensus 1154 V~~VIN 1159 (1858)
+++||=
T Consensus 197 l~~lVi 202 (1104)
T 4ddu_A 197 FDFVFV 202 (1104)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 777773
No 137
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=73.54 E-value=1.4e+02 Score=34.47 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=17.9
Q ss_pred ccEEEEEec--CceEEEEecCCcEEEEeC
Q psy15269 425 FRVRKVCAG--TSFSVALTWDGLVFWWGL 451 (1858)
Q Consensus 425 ~~Iv~IaaG--~~hSlALT~dG~Vy~WGL 451 (1858)
..|..++.. ....+.-..||.|+.|-+
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDV 320 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 346666554 345556667899999973
No 138
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=72.80 E-value=1.3e+02 Score=33.88 Aligned_cols=122 Identities=8% Similarity=0.001 Sum_probs=56.6
Q ss_pred CCeEEEEEc--CCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeC-----CcEE
Q psy15269 219 SNIRHIEAG--QFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSE-----GEVY 291 (1858)
Q Consensus 219 ~~IkqVA~G--~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~d-----G~Vy 291 (1858)
..|..++.. ..+.+....||.|+.|--. .+ .....+.....+..+. ........++...+ |.|+
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~-----~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVS---NG-----QCVATWKSPVPVKRVE-FSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT---TC-----CEEEEEECSSCEEEEE-ECTTSSEEEEEECCBTTBCCEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECC---CC-----cEEEEeecCCCeEEEE-EccCCCEEEEecCCccCCCCEEE
Confidence 357777764 3455556688999998421 11 0011111222233333 22334455555555 8888
Q ss_pred EEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecC
Q psy15269 292 SWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEG 349 (1858)
Q Consensus 292 sWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N 349 (1858)
.|-.........-..........+........+..++.. ..+.++-+.+|.|+.|-..
T Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 886543322111000000111112211111245555443 3455666778999999653
No 139
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.70 E-value=2.2e+02 Score=36.55 Aligned_cols=220 Identities=15% Similarity=0.051 Sum_probs=105.9
Q ss_pred CcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cCceEEEEEeCCeEEEEecCCCCCCC
Q psy15269 278 EAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GHSHSAAVTEDGLLYTWGEGDHGRLG 355 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~~HS~aLT~dG~VYtWG~N~~GQLG 355 (1858)
+...++-..+|.|+.|-..... ....+.. ....|..++. .....++-+.+|.|+.|-.+....
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-- 89 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQV-----------EVRSIQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-- 89 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTE-----------EEEEEEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred CCEEEEEeCCCEEEEEECCCCc-----------eEEEEec--CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 3344444567888888543211 1111221 2233554443 345566667789999996543111
Q ss_pred CCCCCccccccccc-cCCCceEEeecC--ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe
Q psy15269 356 HGDLKSRHTPTLVT-ELSDVGAVSCGE--SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA 432 (1858)
Q Consensus 356 ~G~~~~~~~P~~V~-~l~~I~~IAcG~--~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa 432 (1858)
...+. ....|..++... ...+.-..+| +|..|-..... .....+. .....|..++.
T Consensus 90 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~----------~~~~~~~-~~~~~v~~~~~ 148 (814)
T 3mkq_A 90 ---------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNW----------ALEQTFE-GHEHFVMCVAF 148 (814)
T ss_dssp ---------EEEEECCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTS----------EEEEEEE-CCSSCEEEEEE
T ss_pred ---------EEEEecCCCCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCCc----------eEEEEEc-CCCCcEEEEEE
Confidence 01111 112355554433 3344445677 58888543210 0111111 12234666655
Q ss_pred c---CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEE----cCceEEEEEeCCeEEEEeCCCCCCCC
Q psy15269 433 G---TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSI----GDSHVLALSQYNEVYAWGSNTMGQCG 505 (1858)
Q Consensus 433 G---~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~----G~~HtlALt~dG~VYaWG~N~~GQLG 505 (1858)
. ....+.-..+|.|+.|-+..+.. ...+.......|..++. .+...++-..+|.|+.|-.... +
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~-- 219 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTP------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-S-- 219 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSC------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-E--
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcc------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-c--
Confidence 3 34455567789999998543221 11122111123444444 3344445556899999965321 0
Q ss_pred CCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeec
Q psy15269 506 QDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 506 ~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG 553 (1858)
....+.. ....|..++...+..++++. ..||.+..|-
T Consensus 220 ---------~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~v~vwd 256 (814)
T 3mkq_A 220 ---------CVATLEG-HMSNVSFAVFHPTLPIIISG-SEDGTLKIWN 256 (814)
T ss_dssp ---------EEEEEEC-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEE
T ss_pred ---------EEEEEcC-CCCCEEEEEEcCCCCEEEEE-eCCCeEEEEE
Confidence 1111111 22346666665555444442 3688898884
No 140
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=71.65 E-value=1.4e+02 Score=33.69 Aligned_cols=256 Identities=11% Similarity=0.074 Sum_probs=117.9
Q ss_pred CCeEEEEEcCC------EEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEe---cCcEEEEEeeCCc
Q psy15269 219 SNIRHIEAGQF------CTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKC---SEAHVLTVTSEGE 289 (1858)
Q Consensus 219 ~~IkqVA~G~~------hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~---G~~HtlaLT~dG~ 289 (1858)
..|..++.... ..+.-..||.|+.|--. .+ .....+.. ....|..++. .....+.-..||.
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI---TM-----QCIKHYVG--HGNAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT---TC-----CEEEEEES--CCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch---hc-----eEeeeecC--CCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 34666665433 44445688999988421 00 00111111 1122333333 3455566677899
Q ss_pred EEEEeCCCCCCcCCCCCcccccceeeec-CCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCC-------CCC-
Q psy15269 290 VYSWGVGEHGKLGHGNTLSQRRPKLIMG-GLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLG-------HGD- 358 (1858)
Q Consensus 290 VysWG~N~~GQLG~g~~~~~~~P~~V~~-~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG-------~G~- 358 (1858)
|+.|-...... ...+.. ......|..++.. ..+.+.-..+|.|+.|-....-.+. ...
T Consensus 140 i~iwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 140 LRLWNIQTDTL-----------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp EEEEETTTTEE-----------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred EEEEEeecCeE-----------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCC
Confidence 99996532110 111100 0133457777654 3455666678999999643210000 000
Q ss_pred -------CCccccccc--c-ccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecc--ccc
Q psy15269 359 -------LKSRHTPTL--V-TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALR--KFR 426 (1858)
Q Consensus 359 -------~~~~~~P~~--V-~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~--~~~ 426 (1858)
......|.. . .....|..++......+.-..+| .|..|-.....+.-............+..+. ...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN-AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD 287 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSS-EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred CCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCC-EEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence 000000000 0 01223555555556666667788 5999975443221111001101111111111 111
Q ss_pred EEE--EEec--CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCC-CCCEEEEEEcC--ceEEEEEeCCeEEEEeC
Q psy15269 427 VRK--VCAG--TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLS-SHQIVDVSIGD--SHVLALSQYNEVYAWGS 498 (1858)
Q Consensus 427 Iv~--IaaG--~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~-~~~Iv~Ia~G~--~HtlALt~dG~VYaWG~ 498 (1858)
|.. ++.. ..+.++-..+|.|+.|-+..+... ......+.... ...|..++... ...+.-..||.|+.|-.
T Consensus 288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH--KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG--GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc--cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 222 2222 455566678899999984332211 00111222221 35688887753 34445556899999964
No 141
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=70.56 E-value=1.8e+02 Score=34.57 Aligned_cols=235 Identities=10% Similarity=0.074 Sum_probs=119.6
Q ss_pred EEEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEec-CcEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 223 HIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCS-EAHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 223 qVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G-~~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
.++......+.-..||.|..|-.. .+ .....+. .....|..++.. ....+.-..||.|..|-.....
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~---~~-----~~~~~~~--~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~-- 194 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSI---NK-----KFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-- 194 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETT---TT-----EEEEEEC--CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTE--
T ss_pred EEEECCCEEEEEcCCCcEEEEECC---CC-----cEEEEEe--CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc--
Confidence 344444555556789999999521 00 0000111 111123333322 2355566778999999653211
Q ss_pred CCCCCcccccceeeecCCCCCcEEEEEec----CceEEEEEeCCeEEEEecCCCCCCCCCCCC---------cccccccc
Q psy15269 302 GHGNTLSQRRPKLIMGGLYGKRVTQVSAG----HSHSAAVTEDGLLYTWGEGDHGRLGHGDLK---------SRHTPTLV 368 (1858)
Q Consensus 302 G~g~~~~~~~P~~V~~~l~~~~IvqVa~G----~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~---------~~~~P~~V 368 (1858)
....+. .....|..++.. ..+.+.-+.||.|+.|-............. ....|..+
T Consensus 195 ---------~~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 195 ---------CTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp ---------EEEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred ---------EEEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 111111 123345555442 355666678999999976543222110000 00011111
Q ss_pred cc----CCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC--ceEEEEec
Q psy15269 369 TE----LSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT--SFSVALTW 442 (1858)
Q Consensus 369 ~~----l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~--~hSlALT~ 442 (1858)
.. ...|..++......+.-..+|. |..|-...... ...+. .....|..++... ...+.-..
T Consensus 264 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~-i~vwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~l~sg~~ 330 (464)
T 3v7d_B 264 GVLRGHMASVRTVSGHGNIVVSGSYDNT-LIVWDVAQMKC-----------LYILS-GHTDRIYSTIYDHERKRCISASM 330 (464)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSC-EEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTTTEEEEEET
T ss_pred EEccCccceEEEEcCCCCEEEEEeCCCe-EEEEECCCCcE-----------EEEec-CCCCCEEEEEEcCCCCEEEEEeC
Confidence 11 1235666666666777778884 88885432100 01111 1123455555443 45566678
Q ss_pred CCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCC
Q psy15269 443 DGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 443 dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~ 500 (1858)
||.|+.|-...+. +..........|..++....+.+.-..||.|..|-.+.
T Consensus 331 dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 331 DTTIRIWDLENGE-------LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CCcEEEEECCCCc-------EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 8999999732211 11111122346888888887777778899999998764
No 142
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=67.58 E-value=2.3e+02 Score=34.68 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=73.2
Q ss_pred ceEEeecCceEEEEEc-CCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe--cCceEEEEecCCcEEEEe
Q psy15269 374 VGAVSCGESHTLVLSQ-DGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA--GTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 374 I~~IAcG~~HTlaLt~-dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa--G~~hSlALT~dG~Vy~WG 450 (1858)
+..++......++-.. +|. |+.|-.... ++ .+..+. .....|..++. ...+.+.-..+|.|+.|-
T Consensus 449 ~~~~~~~~~~l~~~~~~d~~-i~~~~~~~~-~~---------~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 449 GSAVSLSQNYVAVGLEEGNT-IQVFKLSDL-EV---------SFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp EEEEEECSSEEEEEETTTSC-EEEEETTEE-EE---------EEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceEEEEcCCEEEEeecCCCe-EEEEECCCc-cc---------cccccC-CccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 4444444444444555 774 888754321 10 001111 11234555555 344556667889999998
Q ss_pred CCCCCCCccccccEEecCCCCCCEEEEEEcC------------ceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCee
Q psy15269 451 LGLRSSSISFHTPVLVTGLSSHQIVDVSIGD------------SHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSK 518 (1858)
Q Consensus 451 LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~------------~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~ 518 (1858)
+..+.. ...+.......|..++... ...+.-..||.|+.|-....++ +..
T Consensus 517 ~~~~~~------~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~ 578 (615)
T 1pgu_A 517 LQSREV------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK------------IIK 578 (615)
T ss_dssp TTTTEE------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC------------CEE
T ss_pred CCCCcc------eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce------------ech
Confidence 322110 1111111334688887743 3344445689999998754321 111
Q ss_pred eecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 519 VVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 519 V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
...-....|..++-..+.. +++ ...||.+..|
T Consensus 579 ~~~~h~~~v~~l~~s~~~~-l~s-~~~d~~v~iw 610 (615)
T 1pgu_A 579 ALNAHKDGVNNLLWETPST-LVS-SGADACIKRW 610 (615)
T ss_dssp ETTSSTTCEEEEEEEETTE-EEE-EETTSCEEEE
T ss_pred hhhcCccceEEEEEcCCCC-eEE-ecCCceEEEE
Confidence 1111123355555444444 333 2378888888
No 143
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=66.65 E-value=12 Score=51.92 Aligned_cols=75 Identities=19% Similarity=0.107 Sum_probs=61.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-ccccCCCCCCcc
Q psy15269 1081 EGKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-SDFIGNDFTNVE 1155 (1858)
Q Consensus 1081 ~~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-VAARGLDIp~V~ 1155 (1858)
.+.+++|.|+|+.-+...++.+++ .++.+..++|..+ ..++...++..++|+.+|+|+|. ...+.+.+.++.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~---~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~ 727 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS---AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 727 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSC---HHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCC---HHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccc
Confidence 457899999999988888777764 4688999999998 89999999999999999999994 444456667776
Q ss_pred eEE
Q psy15269 1156 QVI 1158 (1858)
Q Consensus 1156 ~VI 1158 (1858)
+||
T Consensus 728 lvI 730 (1151)
T 2eyq_A 728 LLI 730 (1151)
T ss_dssp EEE
T ss_pred eEE
Confidence 665
No 144
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=66.09 E-value=11 Score=47.75 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=54.8
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEec-CCCCccHHHHHHHHHHHhcCCCcEEEec--cccccCCCCC-----Cc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSN-NGTSWSHVECLELLNLFNTGKSSLVIMT--LSDFIGNDFT-----NV 1154 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG-~ms~~~Q~eR~~~L~~Fr~G~~~ILVAT--DVAARGLDIp-----~V 1154 (1858)
+.++||+.+.+..+.+++ +.+.++. ..+ +++ +.+.++.|+...-.||++| ...+.|||++ .+
T Consensus 394 g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~------~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l 463 (551)
T 3crv_A 394 ANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS------VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLI 463 (551)
T ss_dssp SEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC------HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESE
T ss_pred CCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC------HHHHHHHHHhcCCeEEEEEecceecccccccccCCcce
Confidence 789999999999998887 3344443 344 344 4557788864445899998 7999999999 47
Q ss_pred ceEEEcCCCCC
Q psy15269 1155 EQVIIYNLPLS 1165 (1858)
Q Consensus 1155 ~~VINyDlP~~ 1165 (1858)
+.||-..+|.-
T Consensus 464 ~~viI~~lPfp 474 (551)
T 3crv_A 464 SDVVIVGIPYP 474 (551)
T ss_dssp EEEEEESCCCC
T ss_pred eEEEEEcCCCC
Confidence 89998888864
No 145
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=64.89 E-value=2.1e+02 Score=33.24 Aligned_cols=99 Identities=5% Similarity=0.027 Sum_probs=53.5
Q ss_pred eEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCc---eEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 436 FSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS---HVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 436 hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~---HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
+.++-+.+|.|+.|-+..+. .+..+.......|..++.... ..+.-..||.|+.|-.....+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------- 325 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSKE------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------- 325 (420)
T ss_dssp EEEEEETTSCEEEEETTTCC------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------
T ss_pred EEEEEcCCCeEEEEECCCCc------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------
Confidence 44555678889998732211 122222222346888877544 455555689999997643211
Q ss_pred cccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeec
Q psy15269 513 VDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 513 vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG 553 (1858)
....+..-.+..|..+.......++. ...|+.+..|-
T Consensus 326 --~~~~~~~~~~~~v~~~~~~~~~~l~s--~~~d~~v~iw~ 362 (420)
T 3vl1_A 326 --PVGEFLINEGTPINNVYFAAGALFVS--SGFDTSIKLDI 362 (420)
T ss_dssp --CSEEEEESTTSCEEEEEEETTEEEEE--ETTTEEEEEEE
T ss_pred --chhhhhccCCCCceEEEeCCCCEEEE--ecCCccEEEEe
Confidence 01122222334456665554443333 24788888884
No 146
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=64.55 E-value=13 Score=47.03 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred hhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1079 FLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1079 lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
++..+++||.++++.-++...+.|++.|+.+..+||+.+ ..++...+..++.|..+|+++|.
T Consensus 62 l~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~---~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 62 LLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQT---REQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp HHSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHHHHHHTCCSEEEECH
T ss_pred HHhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCC---HHHHHHHHHHHhcCCCCEEEECH
Confidence 345588999999999999999999999999999999998 88999999999999999999996
No 147
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=64.05 E-value=43 Score=38.06 Aligned_cols=18 Identities=17% Similarity=-0.068 Sum_probs=12.7
Q ss_pred CceEEEEEeCCeEEEEeCC
Q psy15269 481 DSHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 481 ~~HtlALt~dG~VYaWG~N 499 (1858)
..|+++.. +|++|.+|-.
T Consensus 239 ~~~~~~~~-~~~i~v~GG~ 256 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAGF 256 (306)
T ss_dssp SCCEEEEE-TTEEEEEECB
T ss_pred cceeEEEE-CCEEEEEeCc
Confidence 34665554 8899999953
No 148
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=63.85 E-value=2.2e+02 Score=33.18 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=89.0
Q ss_pred eeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe---cCceEEEEEeCCeEEEEecCCCCCCCCCCCCc
Q psy15269 285 TSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA---GHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS 361 (1858)
Q Consensus 285 T~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~---G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~ 361 (1858)
..+|.|+.|-.+..|.+.. ..+ .+. -....|..++. +....+.-..||.|..|-....+... .
T Consensus 54 ~~~g~i~v~~~~~~~~~~~------~~~-~~~--~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----~ 119 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDK------NVP-LVC--GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----P 119 (402)
T ss_dssp SSSCCEEEEETTCCEECCT------TCC-CBC--CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----C
T ss_pred cCCCEEEEEECccCCCCCC------CCc-eEe--cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----c
Confidence 4589999998765554311 011 111 12345767765 34455556779999999755432111 0
Q ss_pred ccccc-ccc-cCCCceEEeecCc---eEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEee-ecccccEEEEEec--
Q psy15269 362 RHTPT-LVT-ELSDVGAVSCGES---HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIE-ALRKFRVRKVCAG-- 433 (1858)
Q Consensus 362 ~~~P~-~V~-~l~~I~~IAcG~~---HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~-~l~~~~Iv~IaaG-- 433 (1858)
...|. .+. ....|..++.... ..+.-..+|. |+.|-.... + ....+. ......|..++..
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~-~----------~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV-ILVWDVGTG-A----------AVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC-EEEEETTTT-E----------EEEEECTTTCCSCEEEEEECTT
T ss_pred cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE-EEEEECCCC-C----------ccEEEecCCCCCceEEEEECCC
Confidence 01111 111 1223655655433 3444467884 999864321 0 011110 1122345555543
Q ss_pred CceEEEEecCCcEEEEeCCCCCCCccccccEEe-cCCCCCCEEEEEEc-CceEEEEE----eCCeEEEEeCCC
Q psy15269 434 TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLV-TGLSSHQIVDVSIG-DSHVLALS----QYNEVYAWGSNT 500 (1858)
Q Consensus 434 ~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V-~~l~~~~Iv~Ia~G-~~HtlALt----~dG~VYaWG~N~ 500 (1858)
....+.-..||.|+.|-...+. ....+ ....+..+..++.. ....++.. .+|.|+.|-...
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGT------VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTE------EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred CCEEEEEecCCcEEEEeCCCCc------eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence 3445555678999999732211 11112 22222234444443 23334433 577888887653
No 149
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=63.83 E-value=2.2e+02 Score=33.17 Aligned_cols=145 Identities=8% Similarity=-0.007 Sum_probs=70.6
Q ss_pred eCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEc---CCEEEEEecCCcEEEEcccccCCCCCCCCCCce-e
Q psy15269 186 AHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAG---QFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPK-R 261 (1858)
Q Consensus 186 s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G---~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~-~ 261 (1858)
.+|.|++|-.+..|.+. ...+........|..++.. ....+.-..||.|..|--...+... ....+. .
T Consensus 55 ~~g~i~v~~~~~~~~~~------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--~~~~~~~~ 126 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVD------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--PLREPVIT 126 (402)
T ss_dssp SSCCEEEEETTCCEECC------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS--CBCSCSEE
T ss_pred CCCEEEEEECccCCCCC------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--ccCCceEE
Confidence 56889999765544331 1112222223468888874 3455555688999999532111100 000111 1
Q ss_pred ec-CccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEE
Q psy15269 262 VP-LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVT 338 (1858)
Q Consensus 262 V~-~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT 338 (1858)
+. ....+..+.-...|....+.-..||.|+.|-..... ....+........|..++.. ....+.-.
T Consensus 127 ~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-----------AVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-----------EEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-----------ccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 11 112222232111122345555678999999654211 01111000123456666653 34555666
Q ss_pred eCCeEEEEecC
Q psy15269 339 EDGLLYTWGEG 349 (1858)
Q Consensus 339 ~dG~VYtWG~N 349 (1858)
.||.|+.|-..
T Consensus 196 ~d~~i~iwd~~ 206 (402)
T 2aq5_A 196 RDKRVRVIEPR 206 (402)
T ss_dssp TTSEEEEEETT
T ss_pred cCCcEEEEeCC
Confidence 78999999643
No 150
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=63.68 E-value=1.9e+02 Score=32.40 Aligned_cols=181 Identities=14% Similarity=0.047 Sum_probs=92.7
Q ss_pred cEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCCC
Q psy15269 279 AHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLGH 356 (1858)
Q Consensus 279 ~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG~ 356 (1858)
...+.-..||.|+.|-....++ .....+.. ....|..++.. ..+.+.-+.||.|..|-... +++
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~-- 120 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQA-- 120 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSC---------EEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEE--
T ss_pred eEEEEECCCCcEEEEEcCCCCc---------eeEEEecc--ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-CCc--
Confidence 3444456689999997644221 11122221 23457666654 34566667899999996542 110
Q ss_pred CCCCccccccccccCCCceEEee--cC-c-eEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe
Q psy15269 357 GDLKSRHTPTLVTELSDVGAVSC--GE-S-HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA 432 (1858)
Q Consensus 357 G~~~~~~~P~~V~~l~~I~~IAc--G~-~-HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa 432 (1858)
.........|..++. .. . ..+.-..+| .|+.|-.... + . ...+.. ...+..+..
T Consensus 121 --------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~-~-----~-----~~~~~~--~~~~~~~~~ 178 (368)
T 3mmy_A 121 --------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSS-N-----P-----MMVLQL--PERCYCADV 178 (368)
T ss_dssp --------EEEEECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCS-S-----C-----SEEEEC--SSCEEEEEE
T ss_pred --------eeeccccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCC-c-----E-----EEEEec--CCCceEEEe
Confidence 011122234666654 22 2 334445678 6999853321 1 0 011111 123555555
Q ss_pred cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCC--CEEEEEEcCce----EEEEEeCCeEEEEeCCC
Q psy15269 433 GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSH--QIVDVSIGDSH----VLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 433 G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~--~Iv~Ia~G~~H----tlALt~dG~VYaWG~N~ 500 (1858)
-....++.+.+|.++.|-+..... ....+...... .+..+...... .++-..+|.+..|-.+.
T Consensus 179 ~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 179 IYPMAVVATAERGLIVYQLENQPS-----EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ETTEEEEEEGGGCEEEEECSSSCE-----EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred cCCeeEEEeCCCcEEEEEeccccc-----hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 667778888999999998322110 11112211122 23333333332 55556789999998754
No 151
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=61.08 E-value=1.1e+02 Score=34.82 Aligned_cols=17 Identities=29% Similarity=0.519 Sum_probs=12.3
Q ss_pred CceEEEEEeCCeEEEEec
Q psy15269 331 HSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~ 348 (1858)
..|+++.. +|++|++|-
T Consensus 113 ~~~~~~~~-~~~iyv~GG 129 (308)
T 1zgk_A 113 NRIGVGVI-DGHIYAVGG 129 (308)
T ss_dssp BTCEEEEE-TTEEEEECC
T ss_pred cccEEEEE-CCEEEEEcC
Confidence 35666555 789999984
No 152
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=61.02 E-value=3.7e+02 Score=34.85 Aligned_cols=187 Identities=19% Similarity=0.185 Sum_probs=93.4
Q ss_pred EEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec----CceEEEEEeCCeEEEEecCCCCCCC
Q psy15269 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG----HSHSAAVTEDGLLYTWGEGDHGRLG 355 (1858)
Q Consensus 280 HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G----~~HS~aLT~dG~VYtWG~N~~GQLG 355 (1858)
..+.-..||.|..|-.... .......+. .....|..++.. ....+.-..||.|+.|-... |+
T Consensus 23 ~latg~~dg~I~vwd~~~~---------~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~-~~-- 88 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGE---------THKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-GR-- 88 (753)
T ss_dssp CEEEEETTTEEEEEEEETT---------EEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET-TE--
T ss_pred eEEEEECCCcEEEEecCCC---------CCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC-Cc--
Confidence 3344456888888854210 001111111 123457777764 45566677899999996432 10
Q ss_pred CCCCCccccccccc-cCCCceEEeec----CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEE
Q psy15269 356 HGDLKSRHTPTLVT-ELSDVGAVSCG----ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKV 430 (1858)
Q Consensus 356 ~G~~~~~~~P~~V~-~l~~I~~IAcG----~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~I 430 (1858)
......+. ....|..++.. ....+.-+.+| .|..|-....... .+..+. .....|..+
T Consensus 89 ------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~~---------~~~~~~-~~~~~v~~l 151 (753)
T 3jro_A 89 ------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTT---------SPIIID-AHAIGVNSA 151 (753)
T ss_dssp ------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCSSSCC---------CCEEEE-CCSSCEEEE
T ss_pred ------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-cEEEEEeecCCCc---------ceeEee-cCCCceEEE
Confidence 00001111 12236555554 33555566778 5998864432110 111111 112235555
Q ss_pred Eec---------------CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCc-----eEEEEEeC
Q psy15269 431 CAG---------------TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS-----HVLALSQY 490 (1858)
Q Consensus 431 aaG---------------~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~-----HtlALt~d 490 (1858)
... ....+.-..||.|+.|-...+.. ...+..........|..++.... ..+.-..|
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT---EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc---cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 443 34556667799999997322211 11111111122346888887644 33444468
Q ss_pred CeEEEEeCCC
Q psy15269 491 NEVYAWGSNT 500 (1858)
Q Consensus 491 G~VYaWG~N~ 500 (1858)
|.|+.|-...
T Consensus 229 g~I~iwd~~~ 238 (753)
T 3jro_A 229 RTCIIWTQDN 238 (753)
T ss_dssp SCEEEEEESS
T ss_pred CEEEEecCCC
Confidence 9999997654
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.70 E-value=20 Score=39.07 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=51.8
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDI 1151 (1858)
.++||.++|+.-++..++.+++. ++.+..++|+.+ ..++.+ .++++..+|+|+|.-. ...+++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS---IKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSC---HHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCC---hHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCc
Confidence 48999999999999888887763 789999999987 555443 3456778999999621 233556
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 157 ~~~~~lV 163 (220)
T 1t6n_A 157 KHIKHFI 163 (220)
T ss_dssp TTCCEEE
T ss_pred ccCCEEE
Confidence 6666666
No 154
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=60.56 E-value=2.1e+02 Score=31.73 Aligned_cols=274 Identities=10% Similarity=0.017 Sum_probs=127.0
Q ss_pred EEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCceee---cCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCc
Q psy15269 225 EAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV---PLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301 (1858)
Q Consensus 225 A~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V---~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQL 301 (1858)
..+.-..+.++.||+.++++...-+.-..........+ .....+..+. .+.. ...++...+|.|..|-....+..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~~~l~~~~dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVT-ISNP-TRHVYTGGKGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEE-ECSS-SSEEEEECBSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEE-EecC-CcEEEEcCCCeEEEEECCCCCce
Confidence 34455678889999999877531111110111111111 1123333333 2222 23344444888888866432211
Q ss_pred CCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEEe
Q psy15269 302 GHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVS 378 (1858)
Q Consensus 302 G~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IA 378 (1858)
.....+........|..++.. ....++-+.+|.|+.|-.... + .. ....+. ....|..++
T Consensus 86 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~-------~~-~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 86 --------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP-T-------PR-IKAELTSSAPACYALA 148 (337)
T ss_dssp --------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----------E-EEEEEECSSSCEEEEE
T ss_pred --------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-C-------cc-eeeecccCCCceEEEE
Confidence 001111110123446666554 334555567899999954321 0 00 000111 112354444
Q ss_pred ec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec--CceEEEEecCCcEEEEeCCCC
Q psy15269 379 CG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG--TSFSVALTWDGLVFWWGLGLR 454 (1858)
Q Consensus 379 cG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG--~~hSlALT~dG~Vy~WGLG~g 454 (1858)
.. ..+.+.-..+|. |+.|-..... ....+.. ....|..++.. ....+.-+.+|.|+.|-+..+
T Consensus 149 ~~~~~~~l~~~~~dg~-v~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGN-IAVWDLHNQT-----------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp ECTTSSEEEEEETTSC-EEEEETTTTE-----------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ECCCCCEEEEEeCCCc-EEEEeCCCCc-----------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 33 344455567784 8888543210 1111111 22346665553 345556678999999973322
Q ss_pred CCCccccccEEecCCCCCCEEEEEEc--CceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEe
Q psy15269 455 SSSISFHTPVLVTGLSSHQIVDVSIG--DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICA 532 (1858)
Q Consensus 455 ss~~~~~~P~~V~~l~~~~Iv~Ia~G--~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~ 532 (1858)
.. ..... ....+..++.. +...++-..+|.++.|-..... ...+.. ....|..++.
T Consensus 216 ~~------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~-~~~~v~~~~~ 273 (337)
T 1gxr_A 216 RQ------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------------KYQLHL-HESCVLSLKF 273 (337)
T ss_dssp EE------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------------EEEECC-CSSCEEEEEE
T ss_pred ce------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------------eEEEcC-CccceeEEEE
Confidence 10 11111 12346666653 3334444457888888754321 111111 1234666665
Q ss_pred cCcceEEEeecCCCCcEEeec
Q psy15269 533 GSLFSIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 533 G~~hS~alt~~~~dG~vy~WG 553 (1858)
..+..++++. ..||.+..|-
T Consensus 274 ~~~~~~l~~~-~~dg~i~~~~ 293 (337)
T 1gxr_A 274 AYCGKWFVST-GKDNLLNAWR 293 (337)
T ss_dssp CTTSSEEEEE-ETTSEEEEEE
T ss_pred CCCCCEEEEe-cCCCcEEEEE
Confidence 5544444432 3678888884
No 155
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.62 E-value=15 Score=47.09 Aligned_cols=63 Identities=5% Similarity=0.034 Sum_probs=56.2
Q ss_pred hhcCCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCCCccHHHHHHHHHHH--hcCCCcEEEeccc
Q psy15269 1079 FLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLF--NTGKSSLVIMTLS 1144 (1858)
Q Consensus 1079 lL~~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms~~~Q~eR~~~L~~F--r~G~~~ILVATDV 1144 (1858)
+....++||.++++.-++...+.|++.|+.+..++|+++ ..++..++..+ +.+..+|+|+|.-
T Consensus 81 l~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~---~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 81 LCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSS---KEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp HTSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCC---HHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred HHcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCC---HHHHHHHHHHhhcccCCCCEEEEChh
Confidence 344588999999999999999999999999999999998 88888888888 5789999999983
No 156
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=57.25 E-value=2.6e+02 Score=31.90 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=13.8
Q ss_pred cCCEEEEEecCCcEEEEccc
Q psy15269 227 GQFCTFLLDSTGGLLVYGKG 246 (1858)
Q Consensus 227 G~~hTlaLt~dG~VyawG~N 246 (1858)
|.-..++++.+|++|..+.+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~ 43 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRG 43 (329)
T ss_dssp SCEEEEEECTTCCEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCC
Confidence 44456677788888887653
No 157
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=56.66 E-value=0.97 Score=52.04 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=62.0
Q ss_pred ceechHhHHHHHHHHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCccccccc
Q psy15269 871 LWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYESDV 950 (1858)
Q Consensus 871 ~~lld~eR~lalliG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~~~~~ 950 (1858)
+.++-|+|+|+.+.-+.+..+...++. ....+.||..... ......++++.|+..+..... ....
T Consensus 160 ~lil~Pt~~L~~q~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~-~~~~ 224 (282)
T 1rif_A 160 ILIIVPTTALTTQMADDFVDYRLFSHA-----------MIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK-EWFS 224 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSCCGG-----------GEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG-GGGG
T ss_pred EEEEECCHHHHHHHHHHHHHhcccccc-----------eEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHH-HHHh
Confidence 578899999999998887665433222 2234455544221 112356678999988775432 2233
Q ss_pred cccceeecccchhhhhhHHhhhhhhcCCCchhhHHHHHHHHHhHHHHHHHhh
Q psy15269 951 NKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLS 1002 (1858)
Q Consensus 951 ~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~~~esL~~Il~~Lpk~RQtLLf 1002 (1858)
....+|+|||.+ +.. +. ++.|++.+.+.++.+++
T Consensus 225 ~~~~vIiDEaH~----------~~~----~~----~~~il~~~~~~~~~l~l 258 (282)
T 1rif_A 225 QFGMMMNDECHL----------ATG----KS----ISSIISGLNNCMFKFGL 258 (282)
T ss_dssp GEEEEEEETGGG----------CCH----HH----HHHHTTTCTTCCEEEEE
T ss_pred hCCEEEEECCcc----------CCc----cc----HHHHHHHhhcCCeEEEE
Confidence 456677999988 331 23 77777777666777777
No 158
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=56.49 E-value=1.5e+02 Score=33.78 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=12.5
Q ss_pred CceEEEEEeCCeEEEEec
Q psy15269 331 HSHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~ 348 (1858)
..|+++.. +|++|++|-
T Consensus 101 ~~~~~~~~-~~~iyv~GG 117 (318)
T 2woz_A 101 CLFGLGEV-DDKIYVVAG 117 (318)
T ss_dssp CSCEEEEE-TTEEEEEEE
T ss_pred cccceEEE-CCEEEEEcC
Confidence 35666655 789999985
No 159
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=56.11 E-value=36 Score=39.07 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.9
Q ss_pred ceEEEEEeCCeEEEEec
Q psy15269 332 SHSAAVTEDGLLYTWGE 348 (1858)
Q Consensus 332 ~HS~aLT~dG~VYtWG~ 348 (1858)
.|+++.. +|++|++|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4666555 789999985
No 160
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=56.08 E-value=3.1e+02 Score=32.46 Aligned_cols=149 Identities=15% Similarity=0.044 Sum_probs=75.5
Q ss_pred eEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe---cCceEEEEecCCcEEEEeCCCCCCCcc
Q psy15269 383 HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA---GTSFSVALTWDGLVFWWGLGLRSSSIS 459 (1858)
Q Consensus 383 HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa---G~~hSlALT~dG~Vy~WGLG~gss~~~ 459 (1858)
+.+.-..+|. |..|-.+..+..+ ....+..........|..|+. +....+....+|.|+.|-+..+...
T Consensus 196 ~l~s~~~dg~-i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-- 267 (430)
T 2xyi_A 196 YLLSASDDHT-ICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-- 267 (430)
T ss_dssp EEEEECTTSC-EEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--
T ss_pred eEEEEeCCCe-EEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--
Confidence 4455556885 9999765422111 111111111112334666665 3445556678999999984433211
Q ss_pred ccccEEecCCCCCCEEEEEEcCc--eEE-EEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcc
Q psy15269 460 FHTPVLVTGLSSHQIVDVSIGDS--HVL-ALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLF 536 (1858)
Q Consensus 460 ~~~P~~V~~l~~~~Iv~Ia~G~~--Htl-ALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~h 536 (1858)
.+..........|..|+.... +.+ .-..+|.|..|-....++ |..........|..|.-....
T Consensus 268 --~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------~~~~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 268 --KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL------------KLHSFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp --SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------CSEEEECCSSCEEEEEECSSC
T ss_pred --cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------CeEEeecCCCCEEEEEECCCC
Confidence 111111122346777777532 333 334589999998754322 221111123346666665544
Q ss_pred e-EEEeecCCCCcEEeecc
Q psy15269 537 S-IAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 537 S-~alt~~~~dG~vy~WG~ 554 (1858)
. ++++ ...|+.+..|-.
T Consensus 334 ~~~l~s-~~~d~~i~iwd~ 351 (430)
T 2xyi_A 334 ETILAS-SGTDRRLHVWDL 351 (430)
T ss_dssp TTEEEE-EETTSCCEEEEG
T ss_pred CCEEEE-EeCCCcEEEEeC
Confidence 2 2332 236888888843
No 161
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=56.04 E-value=24 Score=39.21 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=51.1
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-CCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-GNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-GLDIp 1152 (1858)
.++||.++|+.-++.+.+.+++ .++.+..++|+.+ ..++...+. + ..+|+|+|. ...+ .+++.
T Consensus 103 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAP---KGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSC---HHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCT
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCC---hHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcc
Confidence 6799999999998888777765 4899999999998 655544443 3 478999995 3333 35677
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 176 ~~~~lV 181 (242)
T 3fe2_A 176 RTTYLV 181 (242)
T ss_dssp TCCEEE
T ss_pred cccEEE
Confidence 777766
No 162
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=53.47 E-value=3e+02 Score=31.39 Aligned_cols=249 Identities=11% Similarity=0.043 Sum_probs=115.7
Q ss_pred CCeEEEEE---cCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEe--cCcEEEEEeeCCcEEEE
Q psy15269 219 SNIRHIEA---GQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKC--SEAHVLTVTSEGEVYSW 293 (1858)
Q Consensus 219 ~~IkqVA~---G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~--G~~HtlaLT~dG~VysW 293 (1858)
..|..++. +....+.-..||.|..|--. .+ .....+.....+..+..... .....++-+.+|.|+.|
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTN---TL-----QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETT---TT-----EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCC---CC-----ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 35788876 33455556678999999421 10 00111112222222221111 12245556778999999
Q ss_pred eCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC--c-eEEEEEeCCeEEEEecCCCCCC-CCC---CCCcccccc
Q psy15269 294 GVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH--S-HSAAVTEDGLLYTWGEGDHGRL-GHG---DLKSRHTPT 366 (1858)
Q Consensus 294 G~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~--~-HS~aLT~dG~VYtWG~N~~GQL-G~G---~~~~~~~P~ 366 (1858)
-...... ...+. .....|..++... . ..+.-..+|.|+.|-....... -.- .......+.
T Consensus 172 d~~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 172 DLKSGSC-----------SHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp ESSSSCC-----------CEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTT
T ss_pred eCCCcce-----------eeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeec
Confidence 6543211 11121 1234566666543 2 2455677899999975432211 000 000000000
Q ss_pred -c-cccCCCceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEec
Q psy15269 367 -L-VTELSDVGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTW 442 (1858)
Q Consensus 367 -~-V~~l~~I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~ 442 (1858)
. ......|..++.. ..+.+....+|. |..|-.......-...... .........+..........++...
T Consensus 239 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKV-----CNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp TSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCC-----CCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred cccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccc-----cccccccceeEEecCCCceEEEEec
Confidence 0 0111236555553 345556667885 8998654322111100000 0000011112222233445566678
Q ss_pred CCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCc--eEEEEEeCCeEEEEeCCCC
Q psy15269 443 DGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS--HVLALSQYNEVYAWGSNTM 501 (1858)
Q Consensus 443 dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~--HtlALt~dG~VYaWG~N~~ 501 (1858)
+|.++.|-+..+. ....+.. ....|..++.... +.+.-..||.|+.|-.+..
T Consensus 313 ~~~i~v~d~~~~~------~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 313 GSTIAVYTVYSGE------QITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp TTEEEEEETTTCC------EEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred CCEEEEEECcCCc------ceeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 8999999832211 1111221 2245777766533 3444556899999987653
No 163
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=53.25 E-value=3.1e+02 Score=31.54 Aligned_cols=320 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred eCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEE--cCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeec
Q psy15269 186 AHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEA--GQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVP 263 (1858)
Q Consensus 186 s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~--G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~ 263 (1858)
.++.|+.|=....... ..-........|..++. .....+.-..||.|..| .+...............
T Consensus 43 ~d~~v~iw~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw---~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 43 TDSSLELWSLLAADSE--------KPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY---STNEANNAINSMARFSN 111 (416)
T ss_dssp CCCCCEEEESSSGGGC--------SCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE---CCSSTTSCCCEEEECCC
T ss_pred CCCeEEEEEccCCCCC--------cEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe---ecccccccccchhhccC
Q ss_pred CccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCC------CcCCCCCcccccceeeecCCCCCcEEEEEec-CceEEE
Q psy15269 264 LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG------KLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG-HSHSAA 336 (1858)
Q Consensus 264 ~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~G------QLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G-~~HS~a 336 (1858)
....+..+.-...+....+.-..||.|+.|-..... . ...+...........-..++.. ....+.
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT--------PLTPGQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC--------CBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc--------ccccccccCCCCCeeEEEeCCCCCcEEEE
Q ss_pred EEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEe--------ecCceEEEEEcCCCEEEEEeCCCC--CCCC
Q psy15269 337 VTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVS--------CGESHTLVLSQDGHTVWSMGSGNL--GKLG 406 (1858)
Q Consensus 337 LT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IA--------cG~~HTlaLt~dG~tVysWG~N~~--GQLG 406 (1858)
-+.+|.|+.| .+.....+..+. .+.-..++...+|..+++.|..+. +.+-
T Consensus 184 ~~~dg~v~iw--------------------d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 184 AGSSNFASIW--------------------DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp ESSSSCEEEE--------------------ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred EcCCCCEEEE--------------------ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Q ss_pred CCCCCceeccEEeee-cccccEEEEEe---cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcC-
Q psy15269 407 HEDTGKVTTPKVIEA-LRKFRVRKVCA---GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGD- 481 (1858)
Q Consensus 407 ~g~~~~~~~P~~V~~-l~~~~Iv~Iaa---G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~- 481 (1858)
.=+......|..... .....|..++. .....+.-..||.|+.|- .....+..........|..++...
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd-------~~~~~~~~~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN-------PESAEQLSQFPARGNWCFKTKFAPE 316 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC-------SSSCCEEEEEECSSSCCCCEEECTT
T ss_pred EEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee-------CCCCccceeecCCCCceEEEEECCC
Q ss_pred --ceEEEEEeCCeEEEEeCCCCCCCCCC----------------------CCCCCcccCeeeecCCCceEEEEEecCcce
Q psy15269 482 --SHVLALSQYNEVYAWGSNTMGQCGQD----------------------NFSNPVDQPSKVVGLEDVCVRQICAGSLFS 537 (1858)
Q Consensus 482 --~HtlALt~dG~VYaWG~N~~GQLG~G----------------------~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS 537 (1858)
...+.-..||.|..|-.+........ ...................+..++-+.+-.
T Consensus 317 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 396 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK 396 (416)
T ss_dssp CTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE
T ss_pred CCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe
Q ss_pred EEEeecCCCCcEEee
Q psy15269 538 IAYTVPPSNSALSSA 552 (1858)
Q Consensus 538 ~alt~~~~dG~vy~W 552 (1858)
++.+ ...|+.|..|
T Consensus 397 ~la~-~~~d~~v~~w 410 (416)
T 2pm9_A 397 LVQI-TPDGKGVSIT 410 (416)
T ss_dssp EECB-CTTSSCBCCB
T ss_pred EEEE-eCCCCeEEEE
No 164
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=53.16 E-value=3.1e+02 Score=31.43 Aligned_cols=136 Identities=12% Similarity=0.137 Sum_probs=69.5
Q ss_pred CcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cCceEEEEEeCCeEEEEecCCCCCCC
Q psy15269 278 EAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GHSHSAAVTEDGLLYTWGEGDHGRLG 355 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~~HS~aLT~dG~VYtWG~N~~GQLG 355 (1858)
....++.+.+|.|+.|-...... ...+. .....|..++. ...+.+.-..+|.|+.|-... ++
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~-----------~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~-- 280 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTP-----------TGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GN-- 280 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSC-----------SEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BS--
T ss_pred CCEEEEEcCCCeEEEEEcCCCce-----------eeeec--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-Cc--
Confidence 34566777889999997543211 11111 12234555554 344555566789999995432 11
Q ss_pred CCCCCccccccccc-cCCCceEEeecCc-eEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec
Q psy15269 356 HGDLKSRHTPTLVT-ELSDVGAVSCGES-HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG 433 (1858)
Q Consensus 356 ~G~~~~~~~P~~V~-~l~~I~~IAcG~~-HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG 433 (1858)
....+. ....|..++.... ..++...+| .|+.|-..... +..........|..++..
T Consensus 281 --------~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 281 --------SQNCFYGHSQSIVSASWVGDDKVISCSMDG-SVRLWSLKQNT------------LLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp --------CSEEECCCSSCEEEEEEETTTEEEEEETTS-EEEEEETTTTE------------EEEEEECTTCCEEEEEEC
T ss_pred --------cceEecCCCccEEEEEECCCCEEEEEeCCC-cEEEEECCCCc------------EeEecccCCccEEEEEEc
Confidence 001111 1123555544333 455556777 58888543210 111111122345555544
Q ss_pred --CceEEEEecCCcEEEEe
Q psy15269 434 --TSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 434 --~~hSlALT~dG~Vy~WG 450 (1858)
....++-..+|.|+.|-
T Consensus 340 ~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCeEEEEE
Confidence 34555667789999998
No 165
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=52.00 E-value=3.6e+02 Score=31.89 Aligned_cols=268 Identities=10% Similarity=0.077 Sum_probs=133.4
Q ss_pred eeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCC-EEEEEecCCcEEEEcccccCCCCCCCCCCceee
Q psy15269 184 SVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQF-CTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV 262 (1858)
Q Consensus 184 a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~-hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V 262 (1858)
+..|+.|..|-.... ++ .-........|..++.... ..+.-..||.|..|--. .+. ....+
T Consensus 138 gs~dg~i~vwd~~~~-~~---------~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~---~~~-----~~~~~ 199 (464)
T 3v7d_B 138 GADDKMIRVYDSINK-KF---------LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK---KGC-----CTHVF 199 (464)
T ss_dssp EETTSCEEEEETTTT-EE---------EEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT---TTE-----EEEEE
T ss_pred EcCCCcEEEEECCCC-cE---------EEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC---CCc-----EEEEE
Confidence 346788888864321 11 0111112335777776533 44455688999999421 110 01111
Q ss_pred c-CccCcceEEEEE-ecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCc---------ccccceeeec-CCCCCcEEEEEec
Q psy15269 263 P-LEAAIVSLSVSK-CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTL---------SQRRPKLIMG-GLYGKRVTQVSAG 330 (1858)
Q Consensus 263 ~-~~~~i~~Is~Ia-~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~---------~~~~P~~V~~-~l~~~~IvqVa~G 330 (1858)
. ....+..+.... ......+.-+.||.|..|-............. ....|..+.. ......|..++..
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 279 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC
Confidence 1 112222232111 12345566677999999976544322111000 0001111111 1123457777777
Q ss_pred CceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccccc-CCCceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCC
Q psy15269 331 HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LSDVGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGH 407 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~~I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~ 407 (1858)
..+.+.-+.+|.|+.|-... ++. ...+.. ...|..++.. ....+.-..+|. |+.|-... |+
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~-~~~----------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-~~--- 343 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQ-MKC----------LYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN-GE--- 343 (464)
T ss_dssp TTEEEEEETTSCEEEEETTT-TEE----------EEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT-TE---
T ss_pred CCEEEEEeCCCeEEEEECCC-CcE----------EEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-Cc---
Confidence 77788888899999996432 110 001111 1235444443 234555566774 88885322 11
Q ss_pred CCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEE
Q psy15269 408 EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLAL 487 (1858)
Q Consensus 408 g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlAL 487 (1858)
....+. .....|..+.....+.+.-..||.|..|-...+. ............+..++..+. .++.
T Consensus 344 -------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~-~l~~ 408 (464)
T 3v7d_B 344 -------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS------RKFSYHHTNLSAITTFYVSDN-ILVS 408 (464)
T ss_dssp -------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC------EEEEEECTTCCCEEEEEECSS-EEEE
T ss_pred -------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc------eeeeecCCCCccEEEEEeCCC-EEEE
Confidence 011111 1233577777777788888899999999843221 111112222234556665554 4444
Q ss_pred EeCCeEEEEeCCC
Q psy15269 488 SQYNEVYAWGSNT 500 (1858)
Q Consensus 488 t~dG~VYaWG~N~ 500 (1858)
..+|.|+.|-...
T Consensus 409 ~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 409 GSENQFNIYNLRS 421 (464)
T ss_dssp EETTEEEEEETTT
T ss_pred ecCCeEEEEECCC
Confidence 4589999997654
No 166
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=51.96 E-value=5e+02 Score=33.59 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=92.7
Q ss_pred CcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec----CceEEEEEeCCeEEEEecCCCCC
Q psy15269 278 EAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG----HSHSAAVTEDGLLYTWGEGDHGR 353 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G----~~HS~aLT~dG~VYtWG~N~~GQ 353 (1858)
....+.-..||.|+.|-.... + ..+.... ......|..++.. ....+.-+.+|.|+.|-......
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~-~---------~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENG-R---------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETT-E---------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred CCEEEEEeCCCeEEEEECCCC-c---------ccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 345566677899999964321 0 0011111 1233457777665 34566677889999996543211
Q ss_pred CCCCCCCcccccccccc-CCCceEEeec---------------CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccE
Q psy15269 354 LGHGDLKSRHTPTLVTE-LSDVGAVSCG---------------ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPK 417 (1858)
Q Consensus 354 LG~G~~~~~~~P~~V~~-l~~I~~IAcG---------------~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~ 417 (1858)
. .+..+.. ...|..++.. ....+.-..+|. |..|-..... ....+.
T Consensus 136 ~---------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~--------~~~~~~ 197 (753)
T 3jro_A 136 T---------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDA--------QTYVLE 197 (753)
T ss_dssp C---------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC-EEEEEEETTT--------TEEEEE
T ss_pred c---------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCc--------ccceee
Confidence 1 0111111 1234444432 334455566784 8888532210 001111
Q ss_pred EeeecccccEEEEEecC-----ceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEc--CceEEEEEeC
Q psy15269 418 VIEALRKFRVRKVCAGT-----SFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIG--DSHVLALSQY 490 (1858)
Q Consensus 418 ~V~~l~~~~Iv~IaaG~-----~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G--~~HtlALt~d 490 (1858)
.........|..++... ...+.-..||.|+.|-...+..... .......-....|..++.. +.+.+.-..|
T Consensus 198 ~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D 275 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK--KTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (753)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB--CCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce--eEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence 11111233466666553 3455566789999998332211000 0000000012234444443 3344444578
Q ss_pred CeEEEEeCCCC
Q psy15269 491 NEVYAWGSNTM 501 (1858)
Q Consensus 491 G~VYaWG~N~~ 501 (1858)
|.|+.|-.+..
T Consensus 276 g~I~vwd~~~~ 286 (753)
T 3jro_A 276 NKVTLWKENLE 286 (753)
T ss_dssp SCEECCBCCSS
T ss_pred CEEEEEecCCC
Confidence 99999987643
No 167
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=51.63 E-value=4.8e+02 Score=33.31 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=91.5
Q ss_pred ecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCC
Q psy15269 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGR 353 (1858)
Q Consensus 276 ~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQ 353 (1858)
..+...++-+.+|.|+.|-.+.... ...+. .....|..++.. ..+.+.-+.+|.|..|-......
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEK-----------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCE-----------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 3445566667789999996543211 11111 122346666554 33455556789999996432111
Q ss_pred CCCCCCCcccccccccc-CCCceEEeecC---ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEE
Q psy15269 354 LGHGDLKSRHTPTLVTE-LSDVGAVSCGE---SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRK 429 (1858)
Q Consensus 354 LG~G~~~~~~~P~~V~~-l~~I~~IAcG~---~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~ 429 (1858)
....+.. ...|..++... ...+.-..+| +|+.|-..... ....+.......|..
T Consensus 132 ----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~~~~~-----------~~~~~~~~~~~~v~~ 189 (814)
T 3mkq_A 132 ----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQST-----------PNFTLTTGQERGVNY 189 (814)
T ss_dssp ----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEETTCSS-----------CSEEEECCCTTCCCE
T ss_pred ----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCc-----------ceeEEecCCCCCEEE
Confidence 0111111 12355555432 3444456678 69999643211 011111111122333
Q ss_pred EEe----cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCc--eEEEEEeCCeEEEEeCCC
Q psy15269 430 VCA----GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS--HVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 430 Iaa----G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~--HtlALt~dG~VYaWG~N~ 500 (1858)
++. .....++-..+|.|+.|-...+. ....+.. ....|..++.... ..+.-..||.|+.|-.+.
T Consensus 190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKS------CVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEECCSTTCCEEEEECTTSEEEEEETTTTE------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCc------EEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 332 34455666778999999732211 1222222 2345777766543 344445689999997643
No 168
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=51.56 E-value=18 Score=40.20 Aligned_cols=70 Identities=9% Similarity=-0.027 Sum_probs=44.4
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-CCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-GNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-GLDIp 1152 (1858)
.++||.++|+.-+..+++.+++. ++.+..++|+.+ ... ..+.++.+..+|+|+|. ...+ .++..
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN---VRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCc---hHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcc
Confidence 68999999999999888888753 678888999875 222 23445667789999993 3333 35666
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 173 ~~~~lV 178 (237)
T 3bor_A 173 WIKMFV 178 (237)
T ss_dssp TCCEEE
T ss_pred cCcEEE
Confidence 677665
No 169
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.10 E-value=2.8e+02 Score=30.34 Aligned_cols=219 Identities=12% Similarity=0.028 Sum_probs=110.9
Q ss_pred cCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cCceEEEEEeCCeEEEEecCCCCCC
Q psy15269 277 SEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GHSHSAAVTEDGLLYTWGEGDHGRL 354 (1858)
Q Consensus 277 G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~~HS~aLT~dG~VYtWG~N~~GQL 354 (1858)
.....+.-+.||.|+.|-.... .....+.. ....|..++. ...+.+.-..+|.+..|--.....
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~- 93 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG- 93 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSS-----------EEEEEEEE--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-
T ss_pred CCCEEEEEEcCCcEEEEECCCC-----------EEEEEeec--CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-
Confidence 3445666678899999964221 11122221 2234555443 345556667788888885432110
Q ss_pred CCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe--
Q psy15269 355 GHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA-- 432 (1858)
Q Consensus 355 G~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa-- 432 (1858)
.......-.....|..++......+.-..+| .|+.|-. + .+..........|..+..
T Consensus 94 ------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~-~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 94 ------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDK-TAKVWKE---G-----------SLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp ------SCC-CEECCCSSCEEEEEEETTEEEEEETTS-EEEEEET---T-----------EEEEEEECCSSCEEEEEEEE
T ss_pred ------CCcccchhhcccCEEEEEecCCEEEEEeCCC-CEEEEcC---C-----------cEEEecccCCCceeEEEEcc
Confidence 0000001111234667777666777777888 5999941 1 011111112233444443
Q ss_pred -cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCc-eEEEEEeCCeEEEEeCCCCCCCCCCCCC
Q psy15269 433 -GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS-HVLALSQYNEVYAWGSNTMGQCGQDNFS 510 (1858)
Q Consensus 433 -G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~-HtlALt~dG~VYaWG~N~~GQLG~G~~~ 510 (1858)
.....+.-..+|.++.|-.+ .....+.......|..++.... ..++-..+|.|+.|-.....
T Consensus 153 ~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-------- 216 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD-------- 216 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETT--------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC--------
T ss_pred CCCCEEEEEECCCCEEEEecC--------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh--------
Confidence 45666777889999999611 1112222223445666655422 34455568999999764311
Q ss_pred CCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEeec
Q psy15269 511 NPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 511 ~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~WG 553 (1858)
+..........|..++...+..++.. ..||.++.|-
T Consensus 217 -----~~~~~~~~~~~i~~~~~~~~~~l~~~--~~dg~v~iwd 252 (313)
T 3odt_A 217 -----VLRTYEGHESFVYCIKLLPNGDIVSC--GEDRTVRIWS 252 (313)
T ss_dssp -----EEEEEECCSSCEEEEEECTTSCEEEE--ETTSEEEEEC
T ss_pred -----hhhhhhcCCceEEEEEEecCCCEEEE--ecCCEEEEEE
Confidence 11111112234666665544433332 3688888883
No 170
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=50.21 E-value=3.1e+02 Score=30.58 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=119.7
Q ss_pred CeEEEEEc--CCEEEEEecCCcEEEEcccccCCCCCCCCCCceee-cCccCcceEEEEEecCc-EEEEEeeCCcEEEEeC
Q psy15269 220 NIRHIEAG--QFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRV-PLEAAIVSLSVSKCSEA-HVLTVTSEGEVYSWGV 295 (1858)
Q Consensus 220 ~IkqVA~G--~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V-~~~~~i~~Is~Ia~G~~-HtlaLT~dG~VysWG~ 295 (1858)
.|..++.. ....+.-..||.|+.|-.. .+.. ...+... .....+..+. +..... ..++-+.+|.|+.|-.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~---~~~~--~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFD---IQAK--NVDLLQSLRYKHPLLCCN-FIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEE---TTTT--EEEEEEEEECSSCEEEEE-EEESSSEEEEEEETTSCEEEECS
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeC---CCCc--cccceeeeecCCceEEEE-ECCCCCcEEEEEcCCCeEEEEEe
Confidence 46666653 2344445678988888422 1100 0001111 1112333333 223344 5666677899999954
Q ss_pred CCCCCcCCCCCcccccceeeecCCCCCcEEEEEec-CceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccc-ccccCCC
Q psy15269 296 GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG-HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT-LVTELSD 373 (1858)
Q Consensus 296 N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G-~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~-~V~~l~~ 373 (1858)
+..++. ..+........|..++.. ....+.-+.+|.|+.|-...++. +.......+. .+.....
T Consensus 87 ~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (342)
T 1yfq_A 87 IGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GVIAVKNLNSNNTKVKNK 152 (342)
T ss_dssp SSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BCEEEEESCSSSSSSCCC
T ss_pred ccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---ccccccCCeeeEEeeCCc
Confidence 122221 111110023446666544 56666777899999995432100 0000000011 1112234
Q ss_pred ceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec---CceEEEEecCCcEEEEe
Q psy15269 374 VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG---TSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 374 I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG---~~hSlALT~dG~Vy~WG 450 (1858)
|..++......++-+.+| .|+.|-....+.. ............|..++.. ....++-..+|.+..|-
T Consensus 153 v~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 153 IFTMDTNSSRLIVGMNNS-QVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp EEEEEECSSEEEEEESTT-EEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred eEEEEecCCcEEEEeCCC-eEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 777777777766667788 5999975431110 0111111122345555543 35566667889999988
Q ss_pred CCCCCCCccccccEEecCCC--------CCCEEEEEEcC--ceEEEEEeCCeEEEEeCC
Q psy15269 451 LGLRSSSISFHTPVLVTGLS--------SHQIVDVSIGD--SHVLALSQYNEVYAWGSN 499 (1858)
Q Consensus 451 LG~gss~~~~~~P~~V~~l~--------~~~Iv~Ia~G~--~HtlALt~dG~VYaWG~N 499 (1858)
+..............+.... ...|..++... ...+.-..+|.|+.|-..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 43321000000111111111 12677777643 334444568899999754
No 171
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=49.44 E-value=45 Score=37.45 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=50.3
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc-----cc--cCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS-----DF--IGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV-----AA--RGLDI 1151 (1858)
.++||.++|+.-++.+++.+++. ++.+..++|+.+ ..++...+ .+..+|+|+|.- .. +++++
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGID---SMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSC---HHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCC---hHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCc
Confidence 57999999999988888777653 889999999987 44443332 246899999952 11 45667
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 185 ~~~~~lV 191 (249)
T 3ber_A 185 RALKYLV 191 (249)
T ss_dssp TTCCEEE
T ss_pred cccCEEE
Confidence 7777666
No 172
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=48.48 E-value=37 Score=36.33 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=49.8
Q ss_pred CcEEEEecChHHHHHHHHHHhhC--CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccc-cCCCCCCc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS--NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDF-IGNDFTNV 1154 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~--g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAA-RGLDIp~V 1154 (1858)
.++||.++|+.-++...+.+++. ++.+..++|+.+ ..++...+. ...+|+|+|. ... +.+++.++
T Consensus 73 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 145 (207)
T 2gxq_A 73 PRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTG---YGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRV 145 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSC---SHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTC
T ss_pred CcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCC---hHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 67999999999999999999874 578899999987 444333332 2578999996 222 24566667
Q ss_pred ceEE
Q psy15269 1155 EQVI 1158 (1858)
Q Consensus 1155 ~~VI 1158 (1858)
++||
T Consensus 146 ~~iV 149 (207)
T 2gxq_A 146 EVAV 149 (207)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 6666
No 173
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=47.66 E-value=8.7 Score=41.43 Aligned_cols=91 Identities=10% Similarity=0.014 Sum_probs=52.2
Q ss_pred ccceechHhHHHHHH-HHHHhCCcCCCCCCCccchhhhccccccccccccCCchhhhhhhhhcccccccccccccCccc-
Q psy15269 869 SFLWLIDMERALALL-IGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNY- 946 (1858)
Q Consensus 869 ~~~~lld~eR~lall-iG~~~~~~~~~~pl~~~e~~~~~wL~s~~~~GG~~~~~q~~dl~~~v~~l~~t~~~ll~~~~~- 946 (1858)
..+.++-|+|+|+.| +.+.+..+... +++...+.|+.....+..++....++++.||..+......
T Consensus 83 ~~~lil~p~~~L~~q~~~~~~~~~~~~------------~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 83 GKVIVLVNKVLLVEQLFRKEFQPFLKK------------WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp CCEEEEESSHHHHHHHHHHTHHHHHTT------------TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred CcEEEEECHHHHHHHHHHHHHHHHhcc------------CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 346888999999998 65554433221 2345667777776666666666788999999988741111
Q ss_pred -------cccccccceeecccchhhhhhHHhhhhhhcCCCch
Q psy15269 947 -------ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPR 981 (1858)
Q Consensus 947 -------~~~~~~~~~lLd~a~r~y~~~~~A~lL~~mGF~~~ 981 (1858)
........+|+|||++ +...++...
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~----------~~~~~~~~~ 182 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHH----------TNKEAVYNN 182 (216)
T ss_dssp ------CCCGGGCSEEEETTC-----------------CHHH
T ss_pred CcccccccchhcccEEEEECchh----------hccCCcHHH
Confidence 2233445677898887 555555555
No 174
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=46.96 E-value=3.4e+02 Score=30.25 Aligned_cols=197 Identities=10% Similarity=0.048 Sum_probs=87.4
Q ss_pred CeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEEEeCC
Q psy15269 220 NIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVG 296 (1858)
Q Consensus 220 ~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N 296 (1858)
.|..++... ...+.-..||.|+.|-.. .+ .....+.. ...+..+. ++....+.+....||.|+.|-..
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~---~~-----~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSL---NG-----ERLGTLDGHTGTIWSID-VDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETT---TC-----CEEEEECCCSSCEEEEE-ECTTSSEEEEEETTTEEEEEETT
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCC---Cc-----hhhhhhhhcCCcEEEEE-EcCCCCEEEEEeCCCeEEEEECC
Confidence 477776643 233344578899888421 10 01111111 12222232 22234566666788999999654
Q ss_pred CCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeC-----CeEEEEecCCCCCCCCCCCCccccccccc
Q psy15269 297 EHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTED-----GLLYTWGEGDHGRLGHGDLKSRHTPTLVT 369 (1858)
Q Consensus 297 ~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~d-----G~VYtWG~N~~GQLG~G~~~~~~~P~~V~ 369 (1858)
....+ ..+. ....|..++.. ..+.++...+ |.|+.|-.........-..........+.
T Consensus 105 ~~~~~-----------~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 105 NGQCV-----------ATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp TCCEE-----------EEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred CCcEE-----------EEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 22110 0111 22335444443 3444455555 88888865432221100000000000111
Q ss_pred cC---CCceEEee--cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec--CceEEEEec
Q psy15269 370 EL---SDVGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG--TSFSVALTW 442 (1858)
Q Consensus 370 ~l---~~I~~IAc--G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG--~~hSlALT~ 442 (1858)
.. ..+..++. .....++-..+| .|+.|-....++ ....+. .....|..++.. ....++-+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNNYE----------YVDSID-LHEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTTTE----------EEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCCcE----------eEEEEe-cCCCceeEEEECCCCCEEEEecC
Confidence 11 13433332 233445556677 588885432111 011111 122345555543 334555567
Q ss_pred CCcEEEEeC
Q psy15269 443 DGLVFWWGL 451 (1858)
Q Consensus 443 dG~Vy~WGL 451 (1858)
+|.|+.|-+
T Consensus 239 d~~i~v~d~ 247 (369)
T 3zwl_B 239 DTNSFLVDV 247 (369)
T ss_dssp TSEEEEEET
T ss_pred CceEEEEEC
Confidence 889999873
No 175
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=46.79 E-value=3.3e+02 Score=29.91 Aligned_cols=265 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred ceeeCCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEEEe--cCCcEEEEcccccCCCCCCCCCCce
Q psy15269 183 ISVAHSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLD--STGGLLVYGKGWLGLANTTIQPLPK 260 (1858)
Q Consensus 183 ~a~s~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTlaLt--~dG~VyawG~NqLGlg~~~~~~~P~ 260 (1858)
++-.|++|+.| +-..|++ ...-..-.....|..|+.......+++ .||.|..|
T Consensus 40 Avg~D~tV~iW-d~~tg~~-------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw----------------- 94 (318)
T 4ggc_A 40 AVALDNSVYLW-SASSGDI-------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW----------------- 94 (318)
T ss_dssp EEEETTEEEEE-ETTTCCE-------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEE-----------------
T ss_pred EEEeCCEEEEE-ECCCCCE-------EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEe-----------------
Q ss_pred eecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeC
Q psy15269 261 RVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTED 340 (1858)
Q Consensus 261 ~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~d 340 (1858)
-....+.+............+..++++.+.|..+....-..............+...............+.+.-..|
T Consensus 95 ---~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 95 ---DVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp ---ETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---ecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC
Q ss_pred CeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCC-EEEEEeCCCCCCCCCCCCCceeccEEe
Q psy15269 341 GLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGH-TVWSMGSGNLGKLGHEDTGKVTTPKVI 419 (1858)
Q Consensus 341 G~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~-tVysWG~N~~GQLG~g~~~~~~~P~~V 419 (1858)
|.|..| +..................+.-..++...++. .++..+....+.+-.-+..........
T Consensus 172 ~~i~iw--------------d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 172 NLVNVW--------------PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp SCEEEE--------------ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred cceeEE--------------ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Q ss_pred eecccccEEEEEecCceEEEEe--cCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEe--CCeEEE
Q psy15269 420 EALRKFRVRKVCAGTSFSVALT--WDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQ--YNEVYA 495 (1858)
Q Consensus 420 ~~l~~~~Iv~IaaG~~hSlALT--~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~--dG~VYa 495 (1858)
..................++.+ .||.|+.|- .....+...-.-....|..++...+..++++. ||.|..
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd-------~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 238 DAHSQVCSILWSPHYKELISGHGFAQNQLVIWK-------YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEE-------TTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred cceeeeeeeeecccccceEEEEEcCCCEEEEEE-------CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q ss_pred E
Q psy15269 496 W 496 (1858)
Q Consensus 496 W 496 (1858)
|
T Consensus 311 W 311 (318)
T 4ggc_A 311 W 311 (318)
T ss_dssp E
T ss_pred E
No 176
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=46.74 E-value=3.8e+02 Score=30.64 Aligned_cols=246 Identities=15% Similarity=0.095 Sum_probs=116.6
Q ss_pred CCeEEEEEcCCEEEEEecCCcEEEEcccccCCCCCCC-CCCceeecC-ccCcceEEEEEec----C---cEEEEEeeCCc
Q psy15269 219 SNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTI-QPLPKRVPL-EAAIVSLSVSKCS----E---AHVLTVTSEGE 289 (1858)
Q Consensus 219 ~~IkqVA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~-~~~P~~V~~-~~~i~~Is~Ia~G----~---~HtlaLT~dG~ 289 (1858)
..|..|+......+.-..||.|+.|-.. .+.... ......+.. ...+..+.- ... + ...+.-..+|.
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNK---LLDNENPKDKSYSHFVHKSGLHHVDV-LQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESB---CCTTCCGGGGEEEEECCTTCEEEEEE-EEEEETTTEEEEEEEEEETTSC
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECC---CcccccCCCcceEEecCCCcEEEEEE-ecccccCCccccEEEEEcCCCC
Confidence 3578888777666666789999999532 111000 001111111 122333332 222 3 34455567899
Q ss_pred EEEEeCCCCCCcCCCCCcccccceeeecCCC----CCcEEEEEec------Cce-EEEEEeCCeEEEEecCC------CC
Q psy15269 290 VYSWGVGEHGKLGHGNTLSQRRPKLIMGGLY----GKRVTQVSAG------HSH-SAAVTEDGLLYTWGEGD------HG 352 (1858)
Q Consensus 290 VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~----~~~IvqVa~G------~~H-S~aLT~dG~VYtWG~N~------~G 352 (1858)
|+.|-...... ........+.. .. ...|..++.. ..+ .+.-+.+|.|+.|-... ..
T Consensus 93 i~iw~~~~~~~------~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 93 LLFYRITREDE------TKKVIFEKLDL-LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEEEEEEECTT------TCCEEEEEECC-SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEEEEccCCcc------cccccceeecc-cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 98886432111 00000111211 11 2456666554 444 55557889999996543 11
Q ss_pred CCCCCCCCcccccc-ccc--------cCCCceEEeecCc-eEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeec
Q psy15269 353 RLGHGDLKSRHTPT-LVT--------ELSDVGAVSCGES-HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEAL 422 (1858)
Q Consensus 353 QLG~G~~~~~~~P~-~V~--------~l~~I~~IAcG~~-HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l 422 (1858)
.+. ..|. .+. ....|..++.... ..++-..+| .|+.|-.... .....+...
T Consensus 166 ~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg-~i~i~d~~~~-----------~~~~~~~~~ 226 (397)
T 1sq9_A 166 TLN-------WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNG-TVQISELSTL-----------RPLYNFESQ 226 (397)
T ss_dssp TTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTS-EEEEEETTTT-----------EEEEEEECC
T ss_pred eee-------ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCC-cEEEEECCCC-----------ceeEEEecc
Confidence 110 1111 111 1223555555433 333344677 5888864321 011111110
Q ss_pred --c---cccEEEEEec--CceEEEEecC---CcEEEEeCCCCCCCccccccEEecCC------------CCCCEEEEEEc
Q psy15269 423 --R---KFRVRKVCAG--TSFSVALTWD---GLVFWWGLGLRSSSISFHTPVLVTGL------------SSHQIVDVSIG 480 (1858)
Q Consensus 423 --~---~~~Iv~IaaG--~~hSlALT~d---G~Vy~WGLG~gss~~~~~~P~~V~~l------------~~~~Iv~Ia~G 480 (1858)
. ...|..++.. ..+.++-..+ |.|+.|-+..+. ....+... ....|..++..
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC------EEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc------ccceeccCcccccccccccccCCcEEEEEEC
Confidence 1 3346666543 3445555667 899999743221 11112110 23467777775
Q ss_pred --CceEEEEEeCCeEEEEeCCC
Q psy15269 481 --DSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 481 --~~HtlALt~dG~VYaWG~N~ 500 (1858)
+...+.-..||.|+.|-...
T Consensus 301 ~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 301 DSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCC
Confidence 33444445689999997643
No 177
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=46.11 E-value=4e+02 Score=30.81 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=105.3
Q ss_pred cCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCC
Q psy15269 277 SEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRL 354 (1858)
Q Consensus 277 G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQL 354 (1858)
.....+.-..||.|..|-......+ ........ -....|..|+.. ..+.+.-..||.|..|-... |++
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~ 161 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETL--------IVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVV 161 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEE
T ss_pred CCCeEEEEECCCEEEEEeccCCCce--------eEeecccc-CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcE
Confidence 4455666677899999965332111 11111110 122346666653 34555556788899995432 111
Q ss_pred CCCCCCcccccccccc-CCCceEEeecCc--e-EEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEee-ecccccEEE
Q psy15269 355 GHGDLKSRHTPTLVTE-LSDVGAVSCGES--H-TLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIE-ALRKFRVRK 429 (1858)
Q Consensus 355 G~G~~~~~~~P~~V~~-l~~I~~IAcG~~--H-TlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~-~l~~~~Iv~ 429 (1858)
-..+.. ...|..++.... + .+.-..||. |..|=... ++.. ..+. ...+..+..
T Consensus 162 ----------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~-v~iwd~~~-~~~~----------~~~~~~~~~~~~~~ 219 (344)
T 4gqb_B 162 ----------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-ILLWDTRC-PKPA----------SQIGCSAPGYLPTS 219 (344)
T ss_dssp ----------EEEECCCSSCEEEEEECSSCTTEEEEEETTSC-EEEEETTS-SSCE----------EECC----CCCEEE
T ss_pred ----------EEEEcCcCCceEEEEecCCCCCceeeeccccc-cccccccc-ccee----------eeeecceeecccee
Confidence 001111 123555555332 2 233456784 88884321 1110 0010 111223444
Q ss_pred EEec---CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcC---ceEEEEEeCCeEEEEeCCCCCC
Q psy15269 430 VCAG---TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGD---SHVLALSQYNEVYAWGSNTMGQ 503 (1858)
Q Consensus 430 IaaG---~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~---~HtlALt~dG~VYaWG~N~~GQ 503 (1858)
++.. ....+.-..||.|..|-...+.. ...+.. ....|..|+... ...+.-..||.|+.|-.+. |+
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~------~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~ 291 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSC------VLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SE 291 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC--C------CEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CE
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCCcE------EEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-Cc
Confidence 4432 23333446789999996322211 111222 234688887753 2333345789999995432 22
Q ss_pred CCCCCCCCCcccCeeeecCCCceEEEEEecCcc-eEEEeecCCCCcEEeec
Q psy15269 504 CGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLF-SIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 504 LG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~h-S~alt~~~~dG~vy~WG 553 (1858)
+ ....+ ....|..++-.... .++.+ ...|+.|..|-
T Consensus 292 ~------------~~~~~-H~~~V~~v~~sp~~~~llas-~s~D~~v~~w~ 328 (344)
T 4gqb_B 292 L------------FRSQA-HRDFVRDATWSPLNHSLLTT-VGWDHQVVHHV 328 (344)
T ss_dssp E------------EEECC-CSSCEEEEEECSSSTTEEEE-EETTSCEEEEE
T ss_pred E------------EEEcC-CCCCEEEEEEeCCCCeEEEE-EcCCCeEEEEE
Confidence 1 11111 12346677654433 33333 34789999884
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=45.93 E-value=3.3e+02 Score=29.80 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=9.4
Q ss_pred eEEEEecCCcEEEEe
Q psy15269 436 FSVALTWDGLVFWWG 450 (1858)
Q Consensus 436 hSlALT~dG~Vy~WG 450 (1858)
..++++.+|++|+-.
T Consensus 210 ~~i~~d~~G~l~v~~ 224 (286)
T 1q7f_A 210 IGVGINSNGEILIAD 224 (286)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred cEEEECCCCCEEEEe
Confidence 346666677776655
No 179
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=45.87 E-value=3.9e+02 Score=30.53 Aligned_cols=291 Identities=12% Similarity=0.062 Sum_probs=126.6
Q ss_pred CeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEEEeCC
Q psy15269 220 NIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVG 296 (1858)
Q Consensus 220 ~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N 296 (1858)
.|..++... ...+.-..||.|+.|-.. | .....+.. ...+..+. ........+....+|.|+.|-..
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~-------~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKT--G-------ALLNVLNFHRAPIVSVK-WNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--S-------CEEEEECCCCSCEEEEE-ECTTSSEEEEEETTCCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCC--C-------CeeeeccCCCccEEEEE-ECCCCCEEEEEecCCeEEEEECC
Confidence 577777653 344555678889888411 0 01111111 12222222 22234456666778999999764
Q ss_pred CCCCcCCCCCcccccceeeec---CCCCCcEEEEEe-cCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cC
Q psy15269 297 EHGKLGHGNTLSQRRPKLIMG---GLYGKRVTQVSA-GHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-EL 371 (1858)
Q Consensus 297 ~~GQLG~g~~~~~~~P~~V~~---~l~~~~IvqVa~-G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l 371 (1858)
....+..-.... ..+..+.. ...+..+..++. .....++.+.+|.|+.|-......+ ..+. ..
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~-----------~~~~~~~ 247 (425)
T 1r5m_A 180 SGTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT-----------GKLIGHH 247 (425)
T ss_dssp TTEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS-----------EEECCCS
T ss_pred CCcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee-----------eeeccCC
Confidence 321111000000 00000000 000000111111 1344556667888888865431100 0111 11
Q ss_pred CCceEEee--cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCc-eEEEEecCCcEEE
Q psy15269 372 SDVGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTS-FSVALTWDGLVFW 448 (1858)
Q Consensus 372 ~~I~~IAc--G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~-hSlALT~dG~Vy~ 448 (1858)
..|..++. .....+.-..+|. |+.|-.... + ....+. .....|..++.... ..++...+|.++.
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~-~----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~~i~i 314 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGT-LRIWHGGNG-N----------SQNCFY-GHSQSIVSASWVGDDKVISCSMDGSVRL 314 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSC-EEEECSSSB-S----------CSEEEC-CCSSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCE-EEEEECCCC-c----------cceEec-CCCccEEEEEECCCCEEEEEeCCCcEEE
Confidence 23444433 2334444556774 888853321 0 011111 12234555554433 5566678899999
Q ss_pred EeCCCCCCCccccccEEecCCCCCCEEEEEEcC--ceEEEEEeCCeEEEEeCCCCCCC-----CCCCCCCCcccCeeeec
Q psy15269 449 WGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGD--SHVLALSQYNEVYAWGSNTMGQC-----GQDNFSNPVDQPSKVVG 521 (1858)
Q Consensus 449 WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~--~HtlALt~dG~VYaWG~N~~GQL-----G~G~~~~~vs~P~~V~~ 521 (1858)
|-+..+. +..........|..++... ...++-..+|.|+.|-....... +..........+..+..
T Consensus 315 ~d~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 315 WSLKQNT-------LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387 (425)
T ss_dssp EETTTTE-------EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred EECCCCc-------EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence 9742211 1111112234677777653 34444556889999976432210 00000000000112222
Q ss_pred CCCc----eEEEEEecCcceEEEeecCCCCcEEeec
Q psy15269 522 LEDV----CVRQICAGSLFSIAYTVPPSNSALSSAF 553 (1858)
Q Consensus 522 L~~~----~I~~Ia~G~~hS~alt~~~~dG~vy~WG 553 (1858)
+... .|..++-..+..++++. ..||.++.|-
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~ 422 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGNKISVA-YSLQEGSVVA 422 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSSEEEEE-ESSSCCEEEE
T ss_pred hcCcccCCceEEEEccCCCceEEEE-ecCceEEEEe
Confidence 2221 67777766555444332 3678888873
No 180
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=45.86 E-value=4.2e+02 Score=30.95 Aligned_cols=163 Identities=7% Similarity=-0.036 Sum_probs=73.5
Q ss_pred CCeEEEEEcC-C--EEEEEecCCcEEEEcccccCCCCCCCCCCce-eecCccCcceEEEEEecCcEEEEEeeCCcEEEEe
Q psy15269 219 SNIRHIEAGQ-F--CTFLLDSTGGLLVYGKGWLGLANTTIQPLPK-RVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWG 294 (1858)
Q Consensus 219 ~~IkqVA~G~-~--hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~-~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG 294 (1858)
..|..|+... . ..+.-..||.|..|-......+.. ..+. .......+..+. +.......+.-..||.|..|-
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~---~~~~~~~~h~~~v~~~~-~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV---YSSSLTYDCSSTVTQIT-MIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC---CSCSEEEECSSCEEEEE-ECTTSSEEEEEETTSEEEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc---cceeeeccCCCCEEEEE-EeCCCCEEEEEeCCCEEEEEE
Confidence 3577777755 3 333345789999995321111110 0001 111122333333 222344556667789999885
Q ss_pred CC--CCCCcCCCCCcccccceeeecCC--CCCcEEEEEe----cCceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccc
Q psy15269 295 VG--EHGKLGHGNTLSQRRPKLIMGGL--YGKRVTQVSA----GHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366 (1858)
Q Consensus 295 ~N--~~GQLG~g~~~~~~~P~~V~~~l--~~~~IvqVa~----G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~ 366 (1858)
.. ..|++-... ....-..+.... .+..+..+.. .....+.-+.+|.|+.|-... +++ ..
T Consensus 140 ~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~----------~~ 206 (437)
T 3gre_A 140 VNHYQQESEVKFL--NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-LER----------LQ 206 (437)
T ss_dssp EEEEEETTEEEEE--EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-CCE----------EE
T ss_pred eccccCCceeecc--ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cee----------eE
Confidence 42 122110000 000000111000 2334555542 245566667789999996432 111 01
Q ss_pred cccc---CCCceEEeec--CceEEEEEcCCCEEEEEeC
Q psy15269 367 LVTE---LSDVGAVSCG--ESHTLVLSQDGHTVWSMGS 399 (1858)
Q Consensus 367 ~V~~---l~~I~~IAcG--~~HTlaLt~dG~tVysWG~ 399 (1858)
.+.. ...|..++.. ....+.-+.+|. |..|-.
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~ 243 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDI 243 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEET
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEc
Confidence 1111 1245555543 334444566774 888854
No 181
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=45.82 E-value=30 Score=37.88 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=46.5
Q ss_pred CcEEEEecChHHHHHHHHHHhh---CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc------ccccCCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD---SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL------SDFIGNDFTN 1153 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~---~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD------VAARGLDIp~ 1153 (1858)
.++||.++|+.-++.+.+.+++ .++.+..++|+.+ ..++... +++ ..+|+|+|. +..+.+++.+
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~ 167 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRN---RNGQIED---ISK-GVDIIIATPGRLNDLQMNNSVNLRS 167 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC---------CHHH---HHS-CCSEEEECHHHHHHHHHTTCCCCTT
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCC---hHHHHHH---hcC-CCCEEEECHHHHHHHHHcCCcCccc
Confidence 6799999999999999988886 4788999999886 4333222 333 489999995 2223456677
Q ss_pred cceEE
Q psy15269 1154 VEQVI 1158 (1858)
Q Consensus 1154 V~~VI 1158 (1858)
+++||
T Consensus 168 ~~~lV 172 (228)
T 3iuy_A 168 ITYLV 172 (228)
T ss_dssp CCEEE
T ss_pred ceEEE
Confidence 77666
No 182
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=45.55 E-value=41 Score=36.00 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=48.6
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc-----ccc-CCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS-----DFI-GNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV-----AAR-GLDI 1151 (1858)
.++||.++|+.-++..++.+++. ++.+..++|+.+ ..+... .+ .+..+|+|+|.- ..+ .+++
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~ 144 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTN---LRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKV 144 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSC---HHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCcc---HHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCc
Confidence 57999999999998888877652 678999999987 444322 22 346789999972 222 3456
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 145 ~~~~~lV 151 (206)
T 1vec_A 145 DHVQMIV 151 (206)
T ss_dssp TTCCEEE
T ss_pred ccCCEEE
Confidence 6666665
No 183
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=45.20 E-value=3.6e+02 Score=29.97 Aligned_cols=192 Identities=12% Similarity=0.036 Sum_probs=98.3
Q ss_pred CcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe--cCc-eEEEEEeCCeEEEEecCCCCCC
Q psy15269 278 EAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA--GHS-HSAAVTEDGLLYTWGEGDHGRL 354 (1858)
Q Consensus 278 ~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~--G~~-HS~aLT~dG~VYtWG~N~~GQL 354 (1858)
....++-..||.|+.|-..... ....+..... ....|..++. ... +.++-+.+|.|+.|-.+..++.
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 92 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred CCEEEEEcCCCeEEEEEeCCCC--------ccccceeeee--cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce
Confidence 3455555678999988654221 0011122221 2344655554 344 5666677899999954122221
Q ss_pred CCCCCCcccccccccc---CCCceEEeec-CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccE-EeeecccccEEE
Q psy15269 355 GHGDLKSRHTPTLVTE---LSDVGAVSCG-ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPK-VIEALRKFRVRK 429 (1858)
Q Consensus 355 G~G~~~~~~~P~~V~~---l~~I~~IAcG-~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~-~V~~l~~~~Iv~ 429 (1858)
..+.. ...|..++.. ....+.-..+| .|+.|-...++. ........+. .+. ....|..
T Consensus 93 -----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-~i~iwd~~~~~~---~~~~~~~~~~~~~~--~~~~v~~ 155 (342)
T 1yfq_A 93 -----------QALTNNEANLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGD---GVIAVKNLNSNNTK--VKNKIFT 155 (342)
T ss_dssp -----------EECBSCCCCSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTT---BCEEEEESCSSSSS--SCCCEEE
T ss_pred -----------EeccccCCCCceEEEEeCCCCEEEEEcCCC-eEEEEccccccc---ccccccCCeeeEEe--eCCceEE
Confidence 11221 2235555443 45555566778 588885322100 0000000000 001 2234667
Q ss_pred EEecCceEEEEecCCcEEEEeCCC-CCCCccccccEEecCCCCCCEEEEEEcC---ceEEEEEeCCeEEEEeCCCC
Q psy15269 430 VCAGTSFSVALTWDGLVFWWGLGL-RSSSISFHTPVLVTGLSSHQIVDVSIGD---SHVLALSQYNEVYAWGSNTM 501 (1858)
Q Consensus 430 IaaG~~hSlALT~dG~Vy~WGLG~-gss~~~~~~P~~V~~l~~~~Iv~Ia~G~---~HtlALt~dG~VYaWG~N~~ 501 (1858)
++......++-+.+|.|+.|-+.. +.. ............|..++... ...++-..+|.++.|-.+..
T Consensus 156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDD-----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTTC-----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEecCCcEEEEeCCCeEEEEECCccccc-----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 777677777778899999998443 221 11222222334677777753 34445556899999887654
No 184
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=45.15 E-value=3.7e+02 Score=30.15 Aligned_cols=239 Identities=12% Similarity=0.042 Sum_probs=113.5
Q ss_pred CeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeec-CccCcceEEEEEec----CcEEEEEeeCCcEEE
Q psy15269 220 NIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVP-LEAAIVSLSVSKCS----EAHVLTVTSEGEVYS 292 (1858)
Q Consensus 220 ~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~-~~~~i~~Is~Ia~G----~~HtlaLT~dG~Vys 292 (1858)
.|..++... ...+.-..||.|+.|-.. .+ ....+. +......|..++.. ....+.-..||.|+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~---~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVE---GE------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEE---TT------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecC---CC------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 466666543 233333468988888421 00 001110 11111223333332 445566677899999
Q ss_pred EeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC----ceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccc
Q psy15269 293 WGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH----SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368 (1858)
Q Consensus 293 WG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~----~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V 368 (1858)
|-..... ..+.... ......|..++... ...+..+.+|.|+.|-....... .+..+
T Consensus 84 wd~~~~~----------~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------~~~~~ 143 (379)
T 3jrp_A 84 WKEENGR----------WSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------SPIII 143 (379)
T ss_dssp EEEETTE----------EEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---------CEEEE
T ss_pred EEcCCCc----------eeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---------eeEEe
Confidence 9643210 0011111 11234577776653 45666678999999965432110 11111
Q ss_pred c-cCCCceEEeec---------------CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe
Q psy15269 369 T-ELSDVGAVSCG---------------ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA 432 (1858)
Q Consensus 369 ~-~l~~I~~IAcG---------------~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa 432 (1858)
. ....|..++.. ....++-..+|. |+.|-..... ....+..........|..++.
T Consensus 144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~--------~~~~~~~~~~~h~~~v~~~~~ 214 (379)
T 3jrp_A 144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAW 214 (379)
T ss_dssp ECCTTCEEEEEECCCC----------CTTCEEEEEETTSC-EEEEEEETTT--------TEEEEEEEECCCSSCEEEEEE
T ss_pred cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe-EEEEEecCCC--------cceeeEEEEecccCcEeEEEE
Confidence 1 11234444433 344555567884 8888432210 001111111112234666665
Q ss_pred cC-----ceEEEEecCCcEEEEeCCCCCCCccccccEEecCC--CCCCEEEEEEcCc--eEEEEEeCCeEEEEeCCC
Q psy15269 433 GT-----SFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGL--SSHQIVDVSIGDS--HVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 433 G~-----~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l--~~~~Iv~Ia~G~~--HtlALt~dG~VYaWG~N~ 500 (1858)
.. ...+....||.|+.|-+..+... ....+... ....|..++.... ..++-..||.|+.|-.+.
T Consensus 215 sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGP----WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSC----CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCCCCCeEEEEeCCCEEEEEeCCCCCcc----ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 43 44555677899999983322111 01111111 2345777766433 344445688888887653
No 185
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=44.95 E-value=31 Score=38.01 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=49.3
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDI 1151 (1858)
.++||.++|+.-++...+.+++. ++.+..++|+.+ ..++...+ ...+|+|+|.-. ...++.
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTP---LSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSC---HHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCC---HHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 68999999999999988888763 788999999987 55554433 257899999732 123455
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 165 ~~~~~lV 171 (230)
T 2oxc_A 165 GSIRLFI 171 (230)
T ss_dssp GGCCEEE
T ss_pred ccCCEEE
Confidence 5555554
No 186
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=44.33 E-value=3.7e+02 Score=29.91 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=110.0
Q ss_pred cEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEE--------ecCceEEEEEeCCeEEEEecCC
Q psy15269 279 AHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVS--------AGHSHSAAVTEDGLLYTWGEGD 350 (1858)
Q Consensus 279 ~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa--------~G~~HS~aLT~dG~VYtWG~N~ 350 (1858)
...+.-..+|.|..|-.....+ ....+. .....|..+. ....+.+.-..+|.|+.|-...
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEM----------PVYSVK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSS----------CSEEEC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred ceEEEecCCCeEEEEeCCCCCc----------cEEEEE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence 3445556789999996543220 011111 1233465553 2344566667789999996543
Q ss_pred CCCCCCCCCCccccccccccCCCceEEe------ecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeeccc
Q psy15269 351 HGRLGHGDLKSRHTPTLVTELSDVGAVS------CGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK 424 (1858)
Q Consensus 351 ~GQLG~G~~~~~~~P~~V~~l~~I~~IA------cG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~ 424 (1858)
.... .....+..-.....|..++ ......++-..+| .|+.|-.... + +.... ...
T Consensus 149 ~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~-~-----------~~~~~-~~~ 209 (357)
T 3i2n_A 149 KDDP-----VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG-DIKLFDLRNM-A-----------LRWET-NIK 209 (357)
T ss_dssp CSSC-----SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS-EEEEEETTTT-E-----------EEEEE-ECS
T ss_pred CCCc-----ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC-eEEEEECccC-c-----------eeeec-CCC
Confidence 2100 0000000000011344444 2334444455677 5888864321 1 01111 112
Q ss_pred ccEEEEEec-----CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceE---EEEEeCCeEEEE
Q psy15269 425 FRVRKVCAG-----TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHV---LALSQYNEVYAW 496 (1858)
Q Consensus 425 ~~Iv~IaaG-----~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~Ht---lALt~dG~VYaW 496 (1858)
..|..++.. ....++-..+|.|+.|-+..+..... ....... .....|..++...... +.-..||.|+.|
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG-FASVSEK-AHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE-EEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc-eeeeccC-CCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 346666554 35556667899999997322111100 0000111 1234688887765433 333468999999
Q ss_pred eCCCCCCCCC----CCCCCCcccCeeeec--CCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 497 GSNTMGQCGQ----DNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 497 G~N~~GQLG~----G~~~~~vs~P~~V~~--L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
-.......-. +...........+.. -....|..++-..+..+++.+...||.+..|
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Confidence 7653222100 000000000111211 1233466776655544443222368888888
No 187
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=43.79 E-value=7.8e+02 Score=33.45 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=63.7
Q ss_pred ceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecC-ceEEEEEcCCCEEEEEeCCCCCCCCCCCC
Q psy15269 332 SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGE-SHTLVLSQDGHTVWSMGSGNLGKLGHEDT 410 (1858)
Q Consensus 332 ~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~-~HTlaLt~dG~tVysWG~N~~GQLG~g~~ 410 (1858)
.+.+.-+.||.|+.|-... |++- ........|..++... ...++...+| +|+.|-... |++
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~-~~~~----------~~~~~~~~v~~~~~~~~~~l~~~~~dg-~v~vwd~~~-~~~----- 1077 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQT-GDYV----------FLQAHQETVKDFRLLQDSRLLSWSFDG-TVKVWNVIT-GRI----- 1077 (1249)
T ss_dssp SCEEEECSSSBEEEEETTT-TEEE----------CCBCCSSCEEEEEECSSSEEEEEESSS-EEEEEETTT-TCC-----
T ss_pred CEEEEEcCCCEEEEEECCC-CceE----------EEecCCCcEEEEEEcCCCcEEEEECCC-cEEEEECCC-Cce-----
Confidence 3444555678888885432 1110 0111122355444433 3445556777 699986432 111
Q ss_pred CceeccEEeeecccccEEEEEe--cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCc--eEEE
Q psy15269 411 GKVTTPKVIEALRKFRVRKVCA--GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS--HVLA 486 (1858)
Q Consensus 411 ~~~~~P~~V~~l~~~~Iv~Iaa--G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~--HtlA 486 (1858)
...+.. ....|..++. .....+.-..||.|+.|-...+.... .+. .....|..++...+ ..+.
T Consensus 1078 -----~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~------~l~-~h~~~v~~~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1078 -----ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH------ELK-GHNGCVRCSAFSLDGILLAT 1144 (1249)
T ss_dssp -----CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB------CCC-CCSSCEEEEEECSSSSEEEE
T ss_pred -----eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee------eec-cCCCcEEEEEECCCCCEEEE
Confidence 011111 1111222222 22344455668888888733222110 011 11235777766533 2333
Q ss_pred EEeCCeEEEEeCCC
Q psy15269 487 LSQYNEVYAWGSNT 500 (1858)
Q Consensus 487 Lt~dG~VYaWG~N~ 500 (1858)
-..||.|+.|-..+
T Consensus 1145 ~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1145 GDDNGEIRIWNVSD 1158 (1249)
T ss_dssp EETTSCCCEEESSS
T ss_pred EeCCCEEEEEECCC
Confidence 34578888887654
No 188
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=43.01 E-value=38 Score=37.26 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=47.0
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc-----cc--CCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD-----FI--GND 1150 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA-----AR--GLD 1150 (1858)
..++||.++|+.-+...++.+++. ++.+..++|+.+ ...+...+ +..+|+|+|.-. .+ .++
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKD---LKHEAERI-----NNINILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC-----CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCC---HHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcc
Confidence 367999999999999888888763 588999999987 44333322 367999999621 12 255
Q ss_pred CCCcceEE
Q psy15269 1151 FTNVEQVI 1158 (1858)
Q Consensus 1151 Ip~V~~VI 1158 (1858)
..++++||
T Consensus 169 ~~~~~~lV 176 (236)
T 2pl3_A 169 ATDLQMLV 176 (236)
T ss_dssp CTTCCEEE
T ss_pred cccccEEE
Confidence 56666555
No 189
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.58 E-value=4.6e+02 Score=30.47 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=114.8
Q ss_pred ecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCC
Q psy15269 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGR 353 (1858)
Q Consensus 276 ~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQ 353 (1858)
-...+.++...+|.|+.|-.... + ....+.. .....|..++.. ..+.++-+.+|.|+.|-......
T Consensus 101 ~s~~~l~~~~~d~~v~lw~~~~~-~----------~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 101 WSNLNVVAVALERNVYVWNADSG-S----------VSALAET-DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168 (401)
T ss_dssp ECTTSEEEEEETTEEEEEETTTC-C----------EEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred ecCCCEEEEECCCeEEEeeCCCC-c----------EeEeeec-CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE
Confidence 34467788889999999976431 1 1111211 123456666653 34555666789999996432111
Q ss_pred CCCCCCCccccccccc-cCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe
Q psy15269 354 LGHGDLKSRHTPTLVT-ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA 432 (1858)
Q Consensus 354 LG~G~~~~~~~P~~V~-~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa 432 (1858)
...+. ....|..++......+.-..+| .|+.|-....+. ....+. .....|..++.
T Consensus 169 -----------~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~----------~~~~~~-~~~~~v~~~~~ 225 (401)
T 4aez_A 169 -----------LRTMAGHQARVGCLSWNRHVLSSGSRSG-AIHHHDVRIANH----------QIGTLQ-GHSSEVCGLAW 225 (401)
T ss_dssp -----------EEEECCCSSCEEEEEEETTEEEEEETTS-EEEEEETTSSSC----------EEEEEE-CCSSCEEEEEE
T ss_pred -----------EEEecCCCCceEEEEECCCEEEEEcCCC-CEEEEecccCcc----------eeeEEc-CCCCCeeEEEE
Confidence 01111 1234667777666666667788 599996542211 011111 12234555554
Q ss_pred c--CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcC--ceEEEEE---eCCeEEEEeCCCCCCCC
Q psy15269 433 G--TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGD--SHVLALS---QYNEVYAWGSNTMGQCG 505 (1858)
Q Consensus 433 G--~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~--~HtlALt---~dG~VYaWG~N~~GQLG 505 (1858)
. ....+.-+.||.|+.|-+..+ .+..........|..++... .+.++.. .||.++.|-.....
T Consensus 226 ~~~~~~l~s~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--- 295 (401)
T 4aez_A 226 RSDGLQLASGGNDNVVQIWDARSS-------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--- 295 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCS-------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---
T ss_pred cCCCCEEEEEeCCCeEEEccCCCC-------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---
Confidence 3 345555667899999974321 11111111223455665543 3444443 38899999754311
Q ss_pred CCCCCCCcccCeeeecCCCceEEEEEecCcceEEEee-cCCCCcEEeec
Q psy15269 506 QDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTV-PPSNSALSSAF 553 (1858)
Q Consensus 506 ~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~-~~~dG~vy~WG 553 (1858)
+..... .+..|..++...+...++++ ...||.++.|-
T Consensus 296 ----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 296 ----------RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp ----------EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred ----------EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 111111 12335666555444444432 33578888884
No 190
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=42.36 E-value=4.4e+02 Score=30.18 Aligned_cols=198 Identities=13% Similarity=0.080 Sum_probs=104.1
Q ss_pred CCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEe---cCcEEEEEeeCCcEEEEeCCCCCCcCCC
Q psy15269 228 QFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKC---SEAHVLTVTSEGEVYSWGVGEHGKLGHG 304 (1858)
Q Consensus 228 ~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~---G~~HtlaLT~dG~VysWG~N~~GQLG~g 304 (1858)
..+.+++|++|++|..--..+-.+.... + +.. -.+|..+.+ .....+++|.+|.+.-.-..++-+-.
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~------l-l~~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~-- 104 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS------L-KSR-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKA-- 104 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC------C-SST-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCS--
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc------c-CCC-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhc--
Confidence 3567889999999976432221110000 2 221 222333322 24578899999999887655543100
Q ss_pred CCcccccceeeecCCCCCcEEEEEe--cCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeec--
Q psy15269 305 NTLSQRRPKLIMGGLYGKRVTQVSA--GHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCG-- 380 (1858)
Q Consensus 305 ~~~~~~~P~~V~~~l~~~~IvqVa~--G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG-- 380 (1858)
........-.+..++.+.. +..+.+++|++|++|.+-....-..|.+...... ..+..-..|+.+...
T Consensus 105 ------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~--i~L~~~d~vv~~~~~~~ 176 (276)
T 3no0_A 105 ------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQG--IKLEKNDETSGLRIWNG 176 (276)
T ss_dssp ------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC--CCCCTTCCEEEEEEESS
T ss_pred ------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE--EccCCCCEEEEEEEeCC
Confidence 0111111123445555543 4557899999999999976554444433221111 112222335544333
Q ss_pred CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEE--ecCceEEEEecCCcEEE--Ee
Q psy15269 381 ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVC--AGTSFSVALTWDGLVFW--WG 450 (1858)
Q Consensus 381 ~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Ia--aG~~hSlALT~dG~Vy~--WG 450 (1858)
..+.+++|++|. +.-.--.++-..+.+....... ..+..++.+. .+....+++|++|.+.. +-
T Consensus 177 ~~~ll~~T~~G~-~kr~~~~e~~~~~R~gkGv~~i------~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 177 EPYLLVITAKGR-VKKISHEEIPKTNRGVKGTEVS------GTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp CSEEEEEETTSC-EEEEEGGGSCCCCTTCCCEECC------CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEE
T ss_pred CCEEEEEeCCCc-EEEeEHHHcccCCCCCcceEEE------cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeC
Confidence 346778899995 7766555554444332221111 1122343332 34567888899999888 76
No 191
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=41.32 E-value=4.7e+02 Score=30.18 Aligned_cols=238 Identities=11% Similarity=0.084 Sum_probs=106.6
Q ss_pred CCeEEEEEcC-CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCC
Q psy15269 219 SNIRHIEAGQ-FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE 297 (1858)
Q Consensus 219 ~~IkqVA~G~-~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~ 297 (1858)
..|..++... ...++-..||.|..|-- -.+................+..+. ++..+...+.-..||.|..|-.+.
T Consensus 95 ~~V~~~~~s~d~~~l~~s~dg~v~lWd~---~~~~~~~~~~~~~~~h~~~V~~v~-~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 95 AGVTDVAWVSEKGILVASDSGAVELWEI---LEKESLLVNKFAKYEHDDIVKTLS-VFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp SCEEEEEEETTTEEEEEETTSCEEEC-----------CCCCEEECCCSSCEEEEE-ECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEEcCCCCEEEEECCCEEEEeec---cccceeEEEeeccCCCCCCEEEEE-ECCCCCEEEEEeCCCeEEEEECCC
Confidence 3577777543 44445567888888831 111000000000000111222222 222334455556788888885432
Q ss_pred CCCcCCCCCcccccceeeecCCCCCcEEEEEec---CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCc
Q psy15269 298 HGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG---HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDV 374 (1858)
Q Consensus 298 ~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G---~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I 374 (1858)
. + ....+. .....|..|+.. ....+.-..||.|..|-... ++... ..........+
T Consensus 171 ~-~----------~~~~~~--~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~-------~~~~~~~~~~v 229 (357)
T 4g56_B 171 K-A----------VLKSYN--AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPAT-------RIDFCASDTIP 229 (357)
T ss_dssp T-E----------EEEEEC--CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBC-------BCCCTTCCSCE
T ss_pred C-c----------EEEEEc--CCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceee-------eeeeccccccc
Confidence 1 0 011111 123457777653 33455667789999994321 11100 00000011124
Q ss_pred eEEeecC--ceEEE-EEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec---CceEEEEecCCcEEE
Q psy15269 375 GAVSCGE--SHTLV-LSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG---TSFSVALTWDGLVFW 448 (1858)
Q Consensus 375 ~~IAcG~--~HTla-Lt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG---~~hSlALT~dG~Vy~ 448 (1858)
..|+... .+.++ -..+|. |+.|-... ++ ....+. .....|..++.. ..+.+.-..||.|+.
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~-i~~wd~~~-~~----------~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGN-VSLVNIKN-PD----------SAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSC-EEEEESSC-GG----------GCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred cchhhhhcccceEEEeecccc-eeEEECCC-Cc----------EeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 5555431 23333 356774 88885322 11 011111 122346666643 334445568999999
Q ss_pred EeCCCCCCCccccccEEecCCCCCCEEEEEEc---CceEEEEEeCCeEEEEeCCCCC
Q psy15269 449 WGLGLRSSSISFHTPVLVTGLSSHQIVDVSIG---DSHVLALSQYNEVYAWGSNTMG 502 (1858)
Q Consensus 449 WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G---~~HtlALt~dG~VYaWG~N~~G 502 (1858)
|-...+ ......+ ....|..|+.. ....+.-..||.|+.|-....|
T Consensus 297 wd~~~~-------~~~~~~~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFS-------EVFRDLS-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSC-------EEEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCC-------cEeEECC-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 962111 1111111 12468888764 2223333468999999765544
No 192
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=41.06 E-value=4.2e+02 Score=29.55 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=110.6
Q ss_pred EEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec---CceEEEEEeCCeEEEEecCCCCCCCC
Q psy15269 280 HVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG---HSHSAAVTEDGLLYTWGEGDHGRLGH 356 (1858)
Q Consensus 280 HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G---~~HS~aLT~dG~VYtWG~N~~GQLG~ 356 (1858)
..+.-..||.|+.|-.... + ....+. .....|..++.. ....+.-+.+|.|+.|-... ++.
T Consensus 87 ~l~~~~~dg~i~v~d~~~~-~----------~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~-- 150 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITM-Q----------CIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTL-- 150 (366)
T ss_dssp EEEEEETTCEEEEECTTTC-C----------EEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEE--
T ss_pred EEEEecCCCEEEEEEchhc-e----------Eeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeE--
Confidence 4555567899999964321 1 111122 133457777663 45566667799999996432 110
Q ss_pred CCCCccccccc-cccCCCceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCC-------CC---C-----CCceeccE-
Q psy15269 357 GDLKSRHTPTL-VTELSDVGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLG-------HE---D-----TGKVTTPK- 417 (1858)
Q Consensus 357 G~~~~~~~P~~-V~~l~~I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG-------~g---~-----~~~~~~P~- 417 (1858)
...... -.....|..++.. ..+.+....+|. |+.|-......+. .. . ......|.
T Consensus 151 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 151 -----VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHS-LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp -----EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSC-EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred -----EEEecccccccCceeEEEECCCCCEEEEecCCCC-EEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 000000 0112236555543 334555567885 8888643211000 00 0 00000000
Q ss_pred EeeecccccEEEEEecCceEEEEecCCcEEEEeCCCCCCCccc-----cccEEecCC--CCCCEEEE--EEc--CceEEE
Q psy15269 418 VIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISF-----HTPVLVTGL--SSHQIVDV--SIG--DSHVLA 486 (1858)
Q Consensus 418 ~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WGLG~gss~~~~-----~~P~~V~~l--~~~~Iv~I--a~G--~~HtlA 486 (1858)
.........|..++......+.-..+|.+..|-.......... .....+..+ ....|..+ +.. +...++
T Consensus 225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence 0000122235555544667777778999999984332211000 001111111 11122222 222 344444
Q ss_pred EEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecC-CCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 487 LSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL-EDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 487 Lt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L-~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
-..+|.|+.|-........ .....+..- ....|..++-..+..++++. ..||.++.|
T Consensus 305 ~~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw 362 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHK--------AKCTTLTHHKCGAAIRQTSFSRDSSILIAV-CDDASIWRW 362 (366)
T ss_dssp ECTTSCEEEEECCSSSGGG--------CEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTSEEEEE
T ss_pred EecCCcEEEEECCCCCCcc--------ccceEEcccccCCceEEEEeCCCCCeEEEE-eCCCEEEEE
Confidence 5568888888765321100 001111111 12457777766555554442 378888888
No 193
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=40.74 E-value=62 Score=36.60 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=50.3
Q ss_pred CCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccc--cCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDF--IGND 1150 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAA--RGLD 1150 (1858)
+.++||.++|+.-++..++.+++ .++.+..+.|+.. ...+. ..++.+ .+|+|+|. ... .+++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~---~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~ 198 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSN---RSAEA---QKLGNG-INIIVATPGRLLDHMQNTPGFM 198 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSC---HHHHH---HHHHHC-CSEEEECHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCC---HHHHH---HHhcCC-CCEEEEcHHHHHHHHHccCCcc
Confidence 36799999999999888888875 4678889999887 44433 233444 89999994 222 2467
Q ss_pred CCCcceEE
Q psy15269 1151 FTNVEQVI 1158 (1858)
Q Consensus 1151 Ip~V~~VI 1158 (1858)
+.++++||
T Consensus 199 ~~~l~~lV 206 (262)
T 3ly5_A 199 YKNLQCLV 206 (262)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 77777766
No 194
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=40.56 E-value=5.1e+02 Score=30.38 Aligned_cols=260 Identities=15% Similarity=0.087 Sum_probs=117.9
Q ss_pred CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEe--cCcEEEEEeeCCcEEEEeCCCCCCcCCCCC
Q psy15269 229 FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKC--SEAHVLTVTSEGEVYSWGVGEHGKLGHGNT 306 (1858)
Q Consensus 229 ~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~--G~~HtlaLT~dG~VysWG~N~~GQLG~g~~ 306 (1858)
...+++.-|++||.|-.. .+ .....+........|.+++- .+.+.+.-+.||.|..|-......
T Consensus 116 ~n~lAvgld~tV~lWd~~---tg-----~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~------ 181 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSAS---SG-----DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR------ 181 (420)
T ss_dssp TSEEEEEETTEEEEEETT---TC-----CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------
T ss_pred CCEEEEEeCCEEEEEECC---CC-----CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE------
Confidence 345666678999999421 11 00111112111222333332 334555557788999986543211
Q ss_pred cccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccccc-CCCceEE--eecCce
Q psy15269 307 LSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LSDVGAV--SCGESH 383 (1858)
Q Consensus 307 ~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~~I~~I--AcG~~H 383 (1858)
..... .....+..++......+.-..++.++.|-....... ...+.. ...+..+ ......
T Consensus 182 -----~~~~~--~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~----------~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 182 -----LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH----------VATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp -----EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEECCSSCEEEEEECTTSSE
T ss_pred -----EEEEe--CCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee----------eEEecccccceeeeeecCCCCe
Confidence 11111 123456677766666666677888888853321110 000111 1122222 222344
Q ss_pred EEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecC--ceEEEE---ecCCcEEEEeCCCCCCCc
Q psy15269 384 TLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGT--SFSVAL---TWDGLVFWWGLGLRSSSI 458 (1858)
Q Consensus 384 TlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~--~hSlAL---T~dG~Vy~WGLG~gss~~ 458 (1858)
.+....+|. +..|-... ++... .+..........|..++... ...++. +.||.|..|-...+..
T Consensus 245 l~s~~~D~~-v~i~~~~~-~~~~~-------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-- 313 (420)
T 4gga_A 245 LASGGNDNL-VNVWPSAP-GEGGW-------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-- 313 (420)
T ss_dssp EEEEETTSC-EEEEESSC-CSSCS-------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--
T ss_pred eeeeecccc-ceEEeecc-ccccc-------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--
Confidence 455566774 88775432 11110 01011111112244443322 122222 3578899997322210
Q ss_pred cccccEEecCCCCCCEEEEEEc-CceEEEEE---eCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecC--CCceEEEEEe
Q psy15269 459 SFHTPVLVTGLSSHQIVDVSIG-DSHVLALS---QYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL--EDVCVRQICA 532 (1858)
Q Consensus 459 ~~~~P~~V~~l~~~~Iv~Ia~G-~~HtlALt---~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L--~~~~I~~Ia~ 532 (1858)
...+. ....+..+... ....++.. .||.|+.|-.... .+ +..+ ....|..++.
T Consensus 314 ----~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-------------~~--v~~l~gH~~~V~~l~~ 372 (420)
T 4gga_A 314 ----LSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-------------AK--VAELKGHTSRVLSLTM 372 (420)
T ss_dssp ----EEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-------------CE--EEEECCCSSCEEEEEE
T ss_pred ----ceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-------------cE--EEEEcCCCCCEEEEEE
Confidence 11111 12234444433 22223332 4788888865321 11 1122 2235777777
Q ss_pred cCcceEEEeecCCCCcEEee
Q psy15269 533 GSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 533 G~~hS~alt~~~~dG~vy~W 552 (1858)
..+..++++. ..|+.|..|
T Consensus 373 spdg~~l~S~-s~D~tvriW 391 (420)
T 4gga_A 373 SPDGATVASA-AADETLRLW 391 (420)
T ss_dssp CTTSSCEEEE-ETTTEEEEE
T ss_pred cCCCCEEEEE-ecCCeEEEE
Confidence 6666655553 478999999
No 195
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=40.23 E-value=4.7e+02 Score=29.92 Aligned_cols=233 Identities=13% Similarity=0.109 Sum_probs=125.7
Q ss_pred CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcc
Q psy15269 229 FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308 (1858)
Q Consensus 229 ~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~ 308 (1858)
.-|++|+.+|=+-+-. |... -...+..+... ....+.+++|++|++|.--..+.-. +...
T Consensus 2 ~vtvils~~Gwir~~~----g~~~-----------~gD~~~~~~~~-~t~~~ll~fT~~G~v~~~~~~~lp~---~~~~- 61 (276)
T 3no0_A 2 SITVAVLQDGSIIPVE----ELPL-----------EKAPVVNILRV-PFTEGLFLVSNRGRVYWIAGSQALQ---GSKV- 61 (276)
T ss_dssp EEEEEEETTSEEEEGG----GCCS-----------SCCCEEEEEEE-ETTSCEEEEETTSEEEEECSHHHHT---SEEC-
T ss_pred cEEEEEcCCceeeecc----CCCC-----------CCCeEEEEEEE-CCCCEEEEEcCCCeEEEEEhhhCcc---Cccc-
Confidence 3578899999776432 2211 11223333322 3456788999999999764321100 0000
Q ss_pred cccceeeecCCCCCcEEEEEec---CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEE--eecCce
Q psy15269 309 QRRPKLIMGGLYGKRVTQVSAG---HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAV--SCGESH 383 (1858)
Q Consensus 309 ~~~P~~V~~~l~~~~IvqVa~G---~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~I--AcG~~H 383 (1858)
. + .-.+++|+.+.+- ..+.+.+|++|.+.-.-..++-+-..| ..-..+..-..+..+ +.+..+
T Consensus 62 -~----l--l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G-----~~~i~lkegD~l~~~~~~~~~~~ 129 (276)
T 3no0_A 62 -S----L--KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQG-----MPIIKLTEGDEVVSIASSVDETH 129 (276)
T ss_dssp -C----C--SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTT-----EECSCCCTTCCEEEEEECCSSCE
T ss_pred -c----c--CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC-----eEEEecCCCCEEEEEEEeCCCCE
Confidence 0 2 2356788888762 357888999998887765544311000 000111122234333 335567
Q ss_pred EEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec--CceEEEEecCCcEEEEeCC------CCC
Q psy15269 384 TLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG--TSFSVALTWDGLVFWWGLG------LRS 455 (1858)
Q Consensus 384 TlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG--~~hSlALT~dG~Vy~WGLG------~gs 455 (1858)
.+++|++|+ +|.+-..+.-..|.+..... .+..-.+.+|+.+... ..+.+++|++|.+.-.-+. .+.
T Consensus 130 ill~T~~G~-~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~g 204 (276)
T 3no0_A 130 ILLFTKKGR-VARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGV 204 (276)
T ss_dssp EEEEETTSE-EEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTC
T ss_pred EEEEECCCE-EEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCC
Confidence 899999995 99887655544444332211 1222234566666544 3467888999988776621 111
Q ss_pred CCccccccEEecCCCCCCEEEEEE--cCceEEEEEeCCeEEE--EeCCCCCCCC
Q psy15269 456 SSISFHTPVLVTGLSSHQIVDVSI--GDSHVLALSQYNEVYA--WGSNTMGQCG 505 (1858)
Q Consensus 456 s~~~~~~P~~V~~l~~~~Iv~Ia~--G~~HtlALt~dG~VYa--WG~N~~GQLG 505 (1858)
..... + ..+..++.+.. +....+++|++|++.- +-.++.-..|
T Consensus 205 kGv~~-----i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 205 KGTEV-----S--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLST 251 (276)
T ss_dssp CCEEC-----C--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCC
T ss_pred cceEE-----E--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcC
Confidence 11000 1 12334555432 4567888999999988 7655444443
No 196
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=39.61 E-value=59 Score=38.22 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=51.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhC-----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDF 1151 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~-----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDI 1151 (1858)
.++||.|+|+.-++..++.+++. ++.+..++|+.+ ..++.. .++++..+|+|+|.-. ...++.
T Consensus 77 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 77 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS---IKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSC---HHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCC
T ss_pred eeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCC---HHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccc
Confidence 58999999999999888877763 789999999987 555443 3456778999999632 223456
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 151 ~~~~~vV 157 (391)
T 1xti_A 151 KHIKHFI 157 (391)
T ss_dssp TTCSEEE
T ss_pred cccCEEE
Confidence 6666666
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=38.86 E-value=6e+02 Score=30.71 Aligned_cols=259 Identities=11% Similarity=0.064 Sum_probs=107.8
Q ss_pred eEEEEEcCCEEEEEecCCc-EEEEccc--ccCCCCCCCCCCceeecCccCcceEEEEEec---------CcEEEEEeeCC
Q psy15269 221 IRHIEAGQFCTFLLDSTGG-LLVYGKG--WLGLANTTIQPLPKRVPLEAAIVSLSVSKCS---------EAHVLTVTSEG 288 (1858)
Q Consensus 221 IkqVA~G~~hTlaLt~dG~-VyawG~N--qLGlg~~~~~~~P~~V~~~~~i~~Is~Ia~G---------~~HtlaLT~dG 288 (1858)
+..|..|....++++.||+ +|..... +...|.... .-..+.. ...+.+..|..+ .-+.++++.||
T Consensus 72 ~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~--~VsviD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 72 IGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTD--YVEVFDP-VTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEE--EEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCC--EEEEEEC-CCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 5567777765588999987 7765310 000000000 0000111 111222333333 34668999888
Q ss_pred c-EEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccc
Q psy15269 289 E-VYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTL 367 (1858)
Q Consensus 289 ~-VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~ 367 (1858)
+ +|....+..+.+..=+......-..|. ..+. ..-...|..-.++++.||++........|....... ....|..
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~--v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~ 224 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLD--VPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPED 224 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEE--CCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTT
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEE--CCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceecccc
Confidence 6 676543222221111111111111111 1111 111233555566888999988887654454411000 0000100
Q ss_pred cccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecC-CcE
Q psy15269 368 VTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWD-GLV 446 (1858)
Q Consensus 368 V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~d-G~V 446 (1858)
-....+. .......+.++++.+| .||..-.... ......+..+..... .......|....++++.+ +++
T Consensus 225 ~~~~~~~-~~~~~dG~~~~vs~~g-~V~v~d~~~~-------~~~v~~~~~~~~~~~-~~~g~~p~g~q~~a~~~~~~~l 294 (386)
T 3sjl_D 225 EFLINHP-AYSQKAGRLVWPTYTG-KIHQIDLSSG-------DAKFLPAVEALTEAE-RADGWRPGGWQQVAYHRALDRI 294 (386)
T ss_dssp SCBCSCC-EEETTTTEEEEEBTTS-EEEEEECTTS-------SCEECCCEESSCHHH-HHTTEEECSSSCEEEETTTTEE
T ss_pred ccccccc-eeEcCCCcEEEEeCCC-EEEEEECCCC-------cceeecceecccccc-ccccccCCCcceeeECCCCCeE
Confidence 0001111 2222334566788888 5888742210 000111111000000 000122333344555543 456
Q ss_pred EEEe-C-CCCCCCccccccEEecCCCCCCEEEEEEcC-ceEEEEEeCCe--EEEE
Q psy15269 447 FWWG-L-GLRSSSISFHTPVLVTGLSSHQIVDVSIGD-SHVLALSQYNE--VYAW 496 (1858)
Q Consensus 447 y~WG-L-G~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~-~HtlALt~dG~--VYaW 496 (1858)
|+-- . +.++.......-..+..-..+.+..|..|. -+.++++.||+ +|+-
T Consensus 295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEE
Confidence 6532 1 111111111111233334556778888875 45899999986 5663
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=37.91 E-value=4.8e+02 Score=29.30 Aligned_cols=112 Identities=16% Similarity=0.022 Sum_probs=55.0
Q ss_pred ceEEeec-CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCc-EEEEeC
Q psy15269 374 VGAVSCG-ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGL-VFWWGL 451 (1858)
Q Consensus 374 I~~IAcG-~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~-Vy~WGL 451 (1858)
+.-..++ ....++++.+|+.+|.|+.... . ......|..+....+-.+.-...+.....+++.+|+ +|.++.
T Consensus 90 ~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~ 163 (276)
T 3no2_A 90 ALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKL 163 (276)
T ss_dssp EEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC
T ss_pred EEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEEC
Confidence 4334455 4556677889987888875321 0 001112222222233334433444566677777776 455553
Q ss_pred CCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeC-Ce-EEEEeCC
Q psy15269 452 GLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQY-NE-VYAWGSN 499 (1858)
Q Consensus 452 G~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~d-G~-VYaWG~N 499 (1858)
+. .|.-+..+.+.++.-...+....++++.+ |+ +|.++.+
T Consensus 164 ~~--------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 164 SG--------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp SS--------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred CC--------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence 21 12222223333454333334446677766 76 6777754
No 199
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=37.51 E-value=1e+02 Score=34.83 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=11.5
Q ss_pred cEEEEEeeCCcEEEEeC
Q psy15269 279 AHVLTVTSEGEVYSWGV 295 (1858)
Q Consensus 279 ~HtlaLT~dG~VysWG~ 295 (1858)
.|++++ -+|++|.+|-
T Consensus 101 ~~~~~~-~~~~iyv~GG 116 (302)
T 2xn4_A 101 TLGAAV-LNGLLYAVGG 116 (302)
T ss_dssp SCEEEE-ETTEEEEEEE
T ss_pred ceEEEE-ECCEEEEEcC
Confidence 456554 4789999985
No 200
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=37.15 E-value=4.7e+02 Score=28.96 Aligned_cols=229 Identities=15% Similarity=0.178 Sum_probs=100.5
Q ss_pred CCeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCc-cCcceEEEEEecCcEEEEEeeCCcEEEEeC
Q psy15269 219 SNIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLE-AAIVSLSVSKCSEAHVLTVTSEGEVYSWGV 295 (1858)
Q Consensus 219 ~~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~-~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~ 295 (1858)
..|..++... ...+.-..||.|..|--. .+. ....+... ..+..+. ........+.-..||.|+.|-.
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~-----~~~~~~~~~~~v~~~~-~~~~~~~l~s~~~d~~i~iwd~ 136 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVS---SGK-----CLKTLKGHSNYVFCCN-FNPQSNLIVSGSFDESVRIWDV 136 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT---TCC-----EEEEEECCSSCEEEEE-ECSSSSEEEEEETTSCEEEEET
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECC---CCc-----EEEEEcCCCCCEEEEE-EcCCCCEEEEEeCCCcEEEEEC
Confidence 3577776543 334444578888888421 110 00111111 1111111 2223344555567888888854
Q ss_pred CCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCC
Q psy15269 296 GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELS 372 (1858)
Q Consensus 296 N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~ 372 (1858)
..... ...+. .....|..++.. ....+.-+.+|.|..|-... ++. ...... ...
T Consensus 137 ~~~~~-----------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~---------~~~~~~~~~~ 193 (312)
T 4ery_A 137 KTGKC-----------LKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQC---------LKTLIDDDNP 193 (312)
T ss_dssp TTCCE-----------EEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCE---------EEEECCSSCC
T ss_pred CCCEE-----------EEEec--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cce---------eeEEeccCCC
Confidence 32110 01111 122346555543 33455556788999995432 110 000000 111
Q ss_pred CceEEee--cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeeccc--ccE-EEEE-ecCceEEEEecCCcE
Q psy15269 373 DVGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRK--FRV-RKVC-AGTSFSVALTWDGLV 446 (1858)
Q Consensus 373 ~I~~IAc--G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~--~~I-v~Ia-aG~~hSlALT~dG~V 446 (1858)
.+..++. .....++-+.+| .|..|-......+ ..+....+ ..+ .... .+..+.+.-..||.|
T Consensus 194 ~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 194 PVSFVKFSPNGKYILAATLDN-TLKLWDYSKGKCL-----------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTT-EEEEEETTTTEEE-----------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred ceEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEE-----------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence 2333332 334455556777 5888854321100 00100000 001 1111 223344445678999
Q ss_pred EEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceE-EEEE---eCCeEEEEeC
Q psy15269 447 FWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHV-LALS---QYNEVYAWGS 498 (1858)
Q Consensus 447 y~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~Ht-lALt---~dG~VYaWG~ 498 (1858)
+.|-+..+. .-..+.+ ....|..+++..... ++.. .||.|..|-.
T Consensus 262 ~vwd~~~~~------~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 262 YIWNLQTKE------IVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEETTTCC------EEEEECC-CSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred EEEECCCch------hhhhhhc-cCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 999742211 0111221 123577777754433 3332 3778888854
No 201
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=34.99 E-value=84 Score=34.92 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=48.2
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDIp 1152 (1858)
.++||.++|+.-+..+.+.+++ .++.+..++|+.+ ..++... .+ ...+|+|+|.-. ...+++.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~---~~-~~~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGAD---THSQIRE---VQ-MGCHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSC---SHHHHHH---HS-SCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCC---HHHHHHH---hC-CCCCEEEECHHHHHHHHHcCCCChh
Confidence 5899999999999888887765 4678899999987 4333222 23 467899999732 1234566
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 174 ~~~~lV 179 (253)
T 1wrb_A 174 FCKYIV 179 (253)
T ss_dssp TCCEEE
T ss_pred hCCEEE
Confidence 666665
No 202
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=34.11 E-value=5e+02 Score=28.37 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=8.5
Q ss_pred EEEEEeCCeEEEEeC
Q psy15269 484 VLALSQYNEVYAWGS 498 (1858)
Q Consensus 484 tlALt~dG~VYaWG~ 498 (1858)
.++++.+|++|.-..
T Consensus 211 ~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 211 GVGINSNGEILIADN 225 (286)
T ss_dssp EEEECTTCCEEEEEC
T ss_pred EEEECCCCCEEEEeC
Confidence 455555666666554
No 203
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=33.91 E-value=5.2e+02 Score=28.55 Aligned_cols=270 Identities=15% Similarity=0.128 Sum_probs=121.1
Q ss_pred CeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCc-cCcceEEEEEecCcEEEEEeeCCcEEEEeCC
Q psy15269 220 NIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLE-AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVG 296 (1858)
Q Consensus 220 ~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~-~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N 296 (1858)
.|..++... ...+.-..||.+..|.... + .....+... ..+..+. ........+.-..||.|..|-..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~---~-----~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYD---G-----KFEKTISGHKLGISDVA-WSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT---C-----CEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSEEEEEETT
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCC---c-----ccchhhccCCCceEEEE-EcCCCCEEEEECCCCEEEEEECC
Confidence 466665543 3334445788998885310 0 001111111 1222222 22233455556678999999653
Q ss_pred CCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccccc-CCC
Q psy15269 297 EHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LSD 373 (1858)
Q Consensus 297 ~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~~ 373 (1858)
.... ...+.. ....|..++.. ....+.-..+|.|+.|-... ++. ...+.. ...
T Consensus 96 ~~~~-----------~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----------~~~~~~~~~~ 151 (312)
T 4ery_A 96 SGKC-----------LKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKC----------LKTLPAHSDP 151 (312)
T ss_dssp TCCE-----------EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCE----------EEEECCCSSC
T ss_pred CCcE-----------EEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEE----------EEEecCCCCc
Confidence 2211 111111 22335444433 34455556788999995432 110 001111 122
Q ss_pred ceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEe--cCceEEEEecCCcEEEE
Q psy15269 374 VGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCA--GTSFSVALTWDGLVFWW 449 (1858)
Q Consensus 374 I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Iaa--G~~hSlALT~dG~Vy~W 449 (1858)
|..++.. ....+.-..+|. |..|-... ++ ....+.......+..++. ...+.++-+.+|.|..|
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGL-CRIWDTAS-GQ----------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSC-EEEEETTT-CC----------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCc-EEEEECCC-Cc----------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 4444432 233444456774 77775322 11 001111111223433333 34456666788999999
Q ss_pred eCCCCCCCccccccEEecCCCCC---CEEEEE-EcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCc
Q psy15269 450 GLGLRSSSISFHTPVLVTGLSSH---QIVDVS-IGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDV 525 (1858)
Q Consensus 450 GLG~gss~~~~~~P~~V~~l~~~---~Iv~Ia-~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~ 525 (1858)
-+..+. ....+...... ...... .+....+.-..||.|+.|-...... -..+.. ...
T Consensus 220 d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~------------~~~~~~-h~~ 280 (312)
T 4ery_A 220 DYSKGK------CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI------------VQKLQG-HTD 280 (312)
T ss_dssp ETTTTE------EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE------------EEEECC-CSS
T ss_pred ECCCCc------EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh------------hhhhhc-cCC
Confidence 732211 01111111110 111122 1233333444689999997643110 011111 223
Q ss_pred eEEEEEecCcceEEEeec-CCCCcEEeec
Q psy15269 526 CVRQICAGSLFSIAYTVP-PSNSALSSAF 553 (1858)
Q Consensus 526 ~I~~Ia~G~~hS~alt~~-~~dG~vy~WG 553 (1858)
.|..++......++.+.. ..|+.+..|-
T Consensus 281 ~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 281 VVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred cEEEEeecCcCCceEEEEccCCccEEEec
Confidence 477777776666655532 4688888883
No 204
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=33.75 E-value=1.1e+02 Score=34.66 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=12.7
Q ss_pred cccceeeCCeEEEEcCCC
Q psy15269 180 DTDISVAHSKVYTWGCNL 197 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN~ 197 (1858)
.+.++..++++|++|-..
T Consensus 48 ~~~~~~~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEEETTEEEEECCBS
T ss_pred eeEEEEECCEEEEEeCCC
Confidence 344556789999999543
No 205
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=33.73 E-value=6e+02 Score=29.22 Aligned_cols=71 Identities=10% Similarity=-0.016 Sum_probs=41.9
Q ss_pred ccEEEEEecCc---eEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEE-eCCeEEEEeCCC
Q psy15269 425 FRVRKVCAGTS---FSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALS-QYNEVYAWGSNT 500 (1858)
Q Consensus 425 ~~Iv~IaaG~~---hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt-~dG~VYaWG~N~ 500 (1858)
..|..++.... ..+.-..+|.|+.|-+..+.. ....+..-.+..|..+.......++.. .||.|..|-...
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-----PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-----chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 34666665443 566667889999998433221 112222223446777766655555444 488999998654
No 206
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=33.33 E-value=5.4e+02 Score=28.56 Aligned_cols=194 Identities=14% Similarity=0.029 Sum_probs=95.1
Q ss_pred CcEEEEEecC-----ceEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccccc-CCCceEEe--------ecCceEEEE
Q psy15269 322 KRVTQVSAGH-----SHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LSDVGAVS--------CGESHTLVL 387 (1858)
Q Consensus 322 ~~IvqVa~G~-----~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~~I~~IA--------cG~~HTlaL 387 (1858)
..|..++... ...+.-+.+|.|+.|-.....+. ...+.. ...|..+. ......+.-
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~ 135 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP----------VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG 135 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC----------SEEECCCSSCEEEEEEESGGGCC-CCCEEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc----------EEEEEecccceEEEeeccccccCCCccEEEEE
Confidence 4577777654 44555567899999965432100 001111 12244442 223345555
Q ss_pred EcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecc---cccEEEEE------ecCceEEEEecCCcEEEEeCCCCCCCc
Q psy15269 388 SQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALR---KFRVRKVC------AGTSFSVALTWDGLVFWWGLGLRSSSI 458 (1858)
Q Consensus 388 t~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~---~~~Iv~Ia------aG~~hSlALT~dG~Vy~WGLG~gss~~ 458 (1858)
..+|. |..|-...... ....+.... ...|..+. ......++-..+|.|+.|-+..+.
T Consensus 136 ~~d~~-i~vwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--- 201 (357)
T 3i2n_A 136 SRDGT-VKVWDPRQKDD----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--- 201 (357)
T ss_dssp ETTSC-EEEECTTSCSS----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---
T ss_pred eCCCe-EEEEeCCCCCC----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---
Confidence 67884 88885433210 011111111 12355554 334455566778999999732211
Q ss_pred cccccEEecCCCCCCEEEEEEcC-----ceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEec
Q psy15269 459 SFHTPVLVTGLSSHQIVDVSIGD-----SHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAG 533 (1858)
Q Consensus 459 ~~~~P~~V~~l~~~~Iv~Ia~G~-----~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G 533 (1858)
+..... ....|..++... ...++-..+|.|+.|-....... . ..+.....-....|..++..
T Consensus 202 ----~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~--~~~~~~~~~~~~~v~~~~~~ 268 (357)
T 3i2n_A 202 ----LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------K--GFASVSEKAHKSTVWQVRHL 268 (357)
T ss_dssp ----EEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------T--EEEEEEEECCSSCEEEEEEE
T ss_pred ----eeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------c--ceeeeccCCCcCCEEEEEEC
Confidence 111111 134677777653 44455556899999975431110 0 00000111123346667666
Q ss_pred Ccce-EEEeecCCCCcEEeec
Q psy15269 534 SLFS-IAYTVPPSNSALSSAF 553 (1858)
Q Consensus 534 ~~hS-~alt~~~~dG~vy~WG 553 (1858)
.+.. ++++ ...||.+..|-
T Consensus 269 ~~~~~~l~~-~~~dg~i~iwd 288 (357)
T 3i2n_A 269 PQNRELFLT-AGGAGGLHLWK 288 (357)
T ss_dssp TTEEEEEEE-EETTSEEEEEE
T ss_pred CCCCcEEEE-EeCCCcEEEee
Confidence 6554 3333 34788888884
No 207
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=32.32 E-value=7.6e+02 Score=29.95 Aligned_cols=150 Identities=15% Similarity=0.115 Sum_probs=74.3
Q ss_pred CcEEEEEecCc---eEEEEEeCCeEEEEecCCCCCCCCCCCCcccccccccc-CC---CceEEeecC---ceEEEEEcCC
Q psy15269 322 KRVTQVSAGHS---HSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE-LS---DVGAVSCGE---SHTLVLSQDG 391 (1858)
Q Consensus 322 ~~IvqVa~G~~---HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~-l~---~I~~IAcG~---~HTlaLt~dG 391 (1858)
..|..++.... ..+.-..+|.|+.|-... +++ ...+.. .. .|..++... ...+....+|
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKF----------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEE----------EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-cce----------eeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 44666665433 456667789999995322 110 001111 12 355555443 3444456778
Q ss_pred CEEEEEeCCCCCCCCCCCCCceeccEEeee---cccccEEEEEe-cCceEEEEecCCcEEEEeCCCCCCCccccccEEec
Q psy15269 392 HTVWSMGSGNLGKLGHEDTGKVTTPKVIEA---LRKFRVRKVCA-GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVT 467 (1858)
Q Consensus 392 ~tVysWG~N~~GQLG~g~~~~~~~P~~V~~---l~~~~Iv~Iaa-G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~ 467 (1858)
. |+.|-... |+ ....+.. .....|..+.. .....+....+|.+..|-+..+.. ...+.
T Consensus 230 ~-i~vwd~~~-~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------~~~~~ 291 (615)
T 1pgu_A 230 K-ISCFDGKS-GE----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC------VQKWT 291 (615)
T ss_dssp C-EEEEETTT-CC----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEE------EEEEE
T ss_pred e-EEEEECCC-CC----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcE------EEEEc
Confidence 4 88885422 11 0111100 12234555554 445566667789999997332110 01111
Q ss_pred CC---CCCCEEEEEE-cCceEEEEEeCCeEEEEeCCC
Q psy15269 468 GL---SSHQIVDVSI-GDSHVLALSQYNEVYAWGSNT 500 (1858)
Q Consensus 468 ~l---~~~~Iv~Ia~-G~~HtlALt~dG~VYaWG~N~ 500 (1858)
.. ....+..+.. .....++-..+|.++.|-.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred CCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 10 0123444433 455666667789999997643
No 208
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=32.18 E-value=2.3e+02 Score=30.07 Aligned_cols=109 Identities=11% Similarity=0.069 Sum_probs=68.0
Q ss_pred CCCCcHhHHHHHHHhcCCCEEEEEccCCcccEEEEEEEC-ChhhHHHHHHHhhc-----CCcEEEEecChHHHHHHHHHH
Q psy15269 1029 SLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRT-PKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAV 1102 (1858)
Q Consensus 1029 SAT~p~~I~~la~~~L~dpv~I~v~~~~~~~I~Q~~~~v-~~~~Kl~~Ll~lL~-----~~k~IIFvnTk~~ad~L~~~L 1102 (1858)
+-..+.+|-++|..++.+...+......-..+. +..+ ...+....+.+.+. .+.+-|.+++...++.+.+.|
T Consensus 4 NYRSt~~Il~~An~li~~~~~~~~~~~~G~~p~--~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L 81 (174)
T 3dmn_A 4 SYRSTQQITDFTKEILVNGEAVTAFDRQGDLPN--VVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKAL 81 (174)
T ss_dssp CCCCCHHHHHHHHTTSCC--------CCCCCCE--EEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCCCcccCCCCCCCCCE--EEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHH
Confidence 445688999999999865432221111111121 1222 33333334444332 266888899999999999999
Q ss_pred hhCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccccccCCCCCCc
Q psy15269 1103 QDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNV 1154 (1858)
Q Consensus 1103 ~~~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVAARGLDIp~V 1154 (1858)
++.|+++..+.++-. .| .-.|.|.|--.+.|+.++.|
T Consensus 82 ~~~gi~~~~l~~~~~------------~~---~~~v~v~t~~~~KGlEf~~V 118 (174)
T 3dmn_A 82 KARGEQVTLIQTENQ------------RL---APGVIVVPSFLAKGLEFDAV 118 (174)
T ss_dssp HTTTCCEEECSSCC-------------CC---CSSEEEEEGGGCTTCCEEEE
T ss_pred HHcCCcceeeccccc------------cc---CCCeEEEEccccCCcCCCEE
Confidence 999999887766442 02 34799999999999987655
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=31.83 E-value=2.4e+02 Score=34.16 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=74.1
Q ss_pred CCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe
Q psy15269 371 LSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 371 l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG 450 (1858)
+++|.++++ +...+++..+| .|..|=-....+. . ....+ ...+..+.+-....++++.+|.|+.|-
T Consensus 87 lp~V~~l~f-d~~~L~v~~~~-~l~v~dv~sl~~~---~--------~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~d 152 (388)
T 1xip_A 87 IPDVIFVCF-HGDQVLVSTRN-ALYSLDLEELSEF---R--------TVTSF-EKPVFQLKNVNNTLVILNSVNDLSALD 152 (388)
T ss_dssp CTTEEEEEE-ETTEEEEEESS-EEEEEESSSTTCE---E--------EEEEC-SSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred CCCeeEEEE-CCCEEEEEcCC-cEEEEEchhhhcc---C--------cccee-ecceeeEEecCCCEEEEECCCCEEEEE
Confidence 445889999 77777777888 5998864433211 0 01111 123556666665678889999999998
Q ss_pred CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeec--CCCceEE
Q psy15269 451 LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVR 528 (1858)
Q Consensus 451 LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~--L~~~~I~ 528 (1858)
+..+... + + ...|..|+....-.++...||.+..|= -+.+++.. ...+..|..+.. -.+.+|.
T Consensus 153 l~~~~~~-----~--~----~~~Vs~v~WSpkG~~vg~~dg~i~~~~-~~~~~~~~---k~~I~~Pp~~~~~~~~~~~V~ 217 (388)
T 1xip_A 153 LRTKSTK-----Q--L----AQNVTSFDVTNSQLAVLLKDRSFQSFA-WRNGEMEK---QFEFSLPSELEELPVEEYSPL 217 (388)
T ss_dssp TTTCCEE-----E--E----EESEEEEEECSSEEEEEETTSCEEEEE-EETTEEEE---EEEECCCHHHHTSCTTTSEEE
T ss_pred ccCCccc-----c--c----cCCceEEEEcCCceEEEEcCCcEEEEc-CCCccccc---cceecCCcccccccCCCeeEE
Confidence 5433221 1 1 124666655544444444455555541 11111000 001222322221 1346677
Q ss_pred EEEecCcceEEEe
Q psy15269 529 QICAGSLFSIAYT 541 (1858)
Q Consensus 529 ~Ia~G~~hS~alt 541 (1858)
+|.-=.++.|+++
T Consensus 218 sI~wl~~~~flv~ 230 (388)
T 1xip_A 218 SVTILSPQDFLAV 230 (388)
T ss_dssp EEEESSSSEEEEE
T ss_pred EEEEecCCeEEEE
Confidence 7777666666655
No 210
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=31.27 E-value=42 Score=33.65 Aligned_cols=84 Identities=8% Similarity=0.100 Sum_probs=51.2
Q ss_pred CcHhHHHHHHHhcCCCEEEEEccCCcc-c---EEEEEEECChhhHHHHHHHhhc-CCcEEEEecChHH--HHHHHHHHhh
Q psy15269 1032 SWGDIEEESNIEVEDPIMKLVKPSSVH-L---VKQYLIRTPKSQKIVNLLSFLE-GKRSLIFVKTYRD--ASRIISAVQD 1104 (1858)
Q Consensus 1032 ~p~~I~~la~~~L~dpv~I~v~~~~~~-~---I~Q~~~~v~~~~Kl~~Ll~lL~-~~k~IIFvnTk~~--ad~L~~~L~~ 1104 (1858)
.++++.++.+..-.+.+.|.+.....- . |.- .+.++-. .+...+.-+. ..++||+|++-.+ +...+..|++
T Consensus 18 s~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpg-A~nip~~-~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~ 95 (124)
T 3flh_A 18 DHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKG-AIAMPAK-DLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLS 95 (124)
T ss_dssp CHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETT-CEECCHH-HHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCC-CEECCHH-HHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHH
Confidence 355555555443334566777543322 1 211 1233432 2333333343 3679999999877 8999999999
Q ss_pred CCCeEEEEecCCC
Q psy15269 1105 SNMMTIPMSNNGT 1117 (1858)
Q Consensus 1105 ~g~~~~~LHG~ms 1117 (1858)
.|+++..+.|++.
T Consensus 96 ~G~~v~~l~GG~~ 108 (124)
T 3flh_A 96 AGFEAYELAGALE 108 (124)
T ss_dssp HTCEEEEETTHHH
T ss_pred cCCeEEEeCCcHH
Confidence 9999888899875
No 211
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=31.14 E-value=2.7e+02 Score=31.14 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=12.3
Q ss_pred cccceeeCCeEEEEcCC
Q psy15269 180 DTDISVAHSKVYTWGCN 196 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGsN 196 (1858)
.+.++..++++|++|-.
T Consensus 105 ~~~~~~~~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTLGDMIYVSGGF 121 (301)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEEccc
Confidence 34455578999999953
No 212
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=30.51 E-value=7.1e+02 Score=29.09 Aligned_cols=184 Identities=18% Similarity=0.174 Sum_probs=87.2
Q ss_pred cEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCCC
Q psy15269 279 AHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLGH 356 (1858)
Q Consensus 279 ~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG~ 356 (1858)
.+.+|+.-|+.||.|-... |+ .-..+...-.+..|..|+.. ..+.+.-+.||.|..|-......+
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g~----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~-- 182 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-GD----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-- 182 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-CC----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--
T ss_pred CCEEEEEeCCEEEEEECCC-CC----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--
Confidence 4577777899999996432 11 01111111123457777654 345555578899999965321110
Q ss_pred CCCCcccccccccc-CCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEE--ec
Q psy15269 357 GDLKSRHTPTLVTE-LSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVC--AG 433 (1858)
Q Consensus 357 G~~~~~~~P~~V~~-l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~Ia--aG 433 (1858)
..+.. ...+..++......+.-..++ .++.|-....... ...+.. ....+..+. ..
T Consensus 183 ---------~~~~~h~~~v~~~s~~~~~l~sgs~d~-~i~~~d~~~~~~~----------~~~~~~-h~~~~~~~~~~~~ 241 (420)
T 4gga_A 183 ---------RNMTSHSARVGSLSWNSYILSSGSRSG-HIHHHDVRVAEHH----------VATLSG-HSQEVCGLRWAPD 241 (420)
T ss_dssp ---------EEECCCSSCEEEEEEETTEEEEEETTS-EEEEEETTSSSCE----------EEEEEC-CSSCEEEEEECTT
T ss_pred ---------EEEeCCCCceEEEeeCCCEEEEEeCCC-ceeEeeeccccee----------eEEecc-cccceeeeeecCC
Confidence 01111 122455555554444455666 4777743221110 001111 111233332 23
Q ss_pred CceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcC--ceEEEEE---eCCeEEEEeCC
Q psy15269 434 TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGD--SHVLALS---QYNEVYAWGSN 499 (1858)
Q Consensus 434 ~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~--~HtlALt---~dG~VYaWG~N 499 (1858)
....+....||.++.|-...+.... .+..........|..++... ...++.. .||.|..|-..
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~---~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGW---VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCS---CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred CCeeeeeeccccceEEeeccccccc---eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 3455666788999999833222111 11111111223455555432 2333332 47888888654
No 213
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=29.87 E-value=46 Score=36.19 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=43.7
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDIp 1152 (1858)
.++||.++|+.-++...+.+++ .++.+..++|+.+ ..++... ++ ..+|+|+|.-. .+.++..
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS---FVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------------CT--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcc---hHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchh
Confidence 5899999999998888887765 4788999999886 4333222 22 37899999632 2345666
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 155 ~~~~iV 160 (224)
T 1qde_A 155 KIKMFI 160 (224)
T ss_dssp TCCEEE
T ss_pred hCcEEE
Confidence 676666
No 214
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=29.36 E-value=45 Score=32.68 Aligned_cols=35 Identities=3% Similarity=0.057 Sum_probs=32.5
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
.++||+|++-.++...+..|++.|+++..+.|++.
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 67999999999999999999999999999999885
No 215
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=28.85 E-value=7.6e+02 Score=28.91 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=52.8
Q ss_pred ceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEc--CceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 435 SFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIG--DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 435 ~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G--~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
.+.+.-..||.|..|-+..+. ....+.+ ....|..++.. +.+.+.-..||.|+.|-.... +
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~~------~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~--------- 371 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTGM------CLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-R--------- 371 (410)
T ss_dssp CEEEEEETTSEEEEEETTTTE------EEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-C---------
T ss_pred CEEEEEeCCCeEEEEECCCCc------eEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c---------
Confidence 345556789999999843221 0111111 12356666654 344555557899999965321 1
Q ss_pred cccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 513 VDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 513 vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
....+. -....|..++......++++. ..||.+..|
T Consensus 372 --~~~~~~-~h~~~v~~l~~~~~~~~l~sg-s~D~~i~vW 407 (410)
T 1vyh_C 372 --CMKTLN-AHEHFVTSLDFHKTAPYVVTG-SVDQTVKVW 407 (410)
T ss_dssp --CCEEEE-CCSSCEEEEEECSSSSCEEEE-ETTSEEEEE
T ss_pred --eEEEEc-CCCCcEEEEEEcCCCCEEEEE-eCCCcEEEE
Confidence 011121 122347777776665555542 368888888
No 216
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=28.74 E-value=7.7e+02 Score=28.93 Aligned_cols=214 Identities=11% Similarity=0.036 Sum_probs=107.8
Q ss_pred EEEcCCEEEEEecCCcEEEEcccccCCCCCCCCCCc--eeecCc--cCcceEEEEEe--cCcEEEEEeeCCcEEEEeCCC
Q psy15269 224 IEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLP--KRVPLE--AAIVSLSVSKC--SEAHVLTVTSEGEVYSWGVGE 297 (1858)
Q Consensus 224 VA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P--~~V~~~--~~i~~Is~Ia~--G~~HtlaLT~dG~VysWG~N~ 297 (1858)
.+....+.+++|+.|++|..--.++-.+.....-.| ..+++. +.+..+..+.- .....+++|.+|.+.-.-..+
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 345667788899999999876443322211111122 123333 33333332221 245788899999888776544
Q ss_pred CCCcCCCCCcccccceeeecCCCCCcEEEE--EecCceEEEEEeCCeEEEEecC--CCCCCCCCCCCccccccccccCCC
Q psy15269 298 HGKLGHGNTLSQRRPKLIMGGLYGKRVTQV--SAGHSHSAAVTEDGLLYTWGEG--DHGRLGHGDLKSRHTPTLVTELSD 373 (1858)
Q Consensus 298 ~GQLG~g~~~~~~~P~~V~~~l~~~~IvqV--a~G~~HS~aLT~dG~VYtWG~N--~~GQLG~G~~~~~~~P~~V~~l~~ 373 (1858)
+-.-.. ........-.+..++.+ +.+..+.+++|++|++|.+-.. .--..|.+..... -..+..-..
T Consensus 129 ~~~~~r-------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~--~i~L~~~d~ 199 (327)
T 3uc1_A 129 FDSNRS-------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ--GMRFNIDDR 199 (327)
T ss_dssp GCCCCS-------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE--SSCCCTTCC
T ss_pred hhcccc-------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee--eecCCCCCE
Confidence 321110 01111111123444443 3467789999999999998776 4333333221111 011222233
Q ss_pred ceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEE--EecCceEEEEecCCcEEEE
Q psy15269 374 VGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKV--CAGTSFSVALTWDGLVFWW 449 (1858)
Q Consensus 374 I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~I--aaG~~hSlALT~dG~Vy~W 449 (1858)
|+.+..- ..+.+++|++| .+.-.--.++-..+.+....... .+.. .+..++.+ ..+....+++|++|.+.-+
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G-~~Krt~l~e~~~~~R~~~G~~~~--~l~~-~~d~lv~~~~~~~~~~i~l~T~~G~~ir~ 275 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGG-YAKRTAIEEYPVQGRGGKGVLTV--MYDR-RRGRLVGALIVDDDSELYAVTSGGGVIRT 275 (327)
T ss_dssp EEEEEECCTTCEEEEEETTS-EEEEEEGGGSCBCCTTSCCEESS--CCCT-TTCSEEEEEEECTTCEEEEEEGGGCEEEE
T ss_pred EEEEEEECCCCEEEEEeCCC-cEEEEEHHHccccCcCCCcEEEE--EecC-CCCeEEEEEEeCCCccEEEEcCCCeEEEE
Confidence 6555443 34677888888 46655434433222221111000 0000 01123332 3356788999999999888
Q ss_pred e
Q psy15269 450 G 450 (1858)
Q Consensus 450 G 450 (1858)
-
T Consensus 276 ~ 276 (327)
T 3uc1_A 276 A 276 (327)
T ss_dssp E
T ss_pred e
Confidence 6
No 217
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=28.66 E-value=1.2e+02 Score=35.94 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=41.6
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
.++||.++|+.-+..+++.+++ .++.+..++|+.+ ..++.. .++ ...+|+|+|.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~---~~~-~~~~I~v~Tp 159 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAD---IGQQIR---DLE-RGCHLLVATP 159 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSC---HHHHHH---HHT-TCCSEEEECH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCC---HHHHHH---Hhh-CCCCEEEECh
Confidence 4699999999999888888765 4788999999987 544433 233 3578999996
No 218
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=28.33 E-value=71 Score=31.03 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=38.5
Q ss_pred CChhhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCCCe-EEEEecCCC
Q psy15269 1067 TPKSQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSNMM-TIPMSNNGT 1117 (1858)
Q Consensus 1067 v~~~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g~~-~~~LHG~ms 1117 (1858)
++-.+-...+...+.. ..+||+|++-.++...+..|++.|+. +..|.|++.
T Consensus 36 ip~~~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 36 MPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CCGGGHHHHHHHHSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4444433344445544 67999999999999999999999995 888899875
No 219
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=28.13 E-value=6.7e+02 Score=28.00 Aligned_cols=200 Identities=17% Similarity=0.111 Sum_probs=98.4
Q ss_pred CCcEEEEEec----CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccc-cCCCceEEeecC----ceEEEEEcCC
Q psy15269 321 GKRVTQVSAG----HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT-ELSDVGAVSCGE----SHTLVLSQDG 391 (1858)
Q Consensus 321 ~~~IvqVa~G----~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~-~l~~I~~IAcG~----~HTlaLt~dG 391 (1858)
...|..++.. ....+.-..||.|+.|-... ++ ......+. ....|..++... ...+....+|
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-GR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET-TE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC-Cc--------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 3457777754 45666667889999995432 10 00000111 122355555443 3455556778
Q ss_pred CEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEec---------------CceEEEEecCCcEEEEeCCCCCC
Q psy15269 392 HTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG---------------TSFSVALTWDGLVFWWGLGLRSS 456 (1858)
Q Consensus 392 ~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG---------------~~hSlALT~dG~Vy~WGLG~gss 456 (1858)
.|..|-...... ..+..+. .....|..++.. ....++-..+|.|+.|-+..+..
T Consensus 126 -~i~v~d~~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 126 -KVSVVEFKENGT---------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp -EEEEEECCTTSC---------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred -cEEEEecCCCCc---------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 588886443211 0111111 122235555443 34556667899999997322111
Q ss_pred CccccccEEecCCCCCCEEEEEEcCc-----eEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecC--CCceEEE
Q psy15269 457 SISFHTPVLVTGLSSHQIVDVSIGDS-----HVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL--EDVCVRQ 529 (1858)
Q Consensus 457 ~~~~~~P~~V~~l~~~~Iv~Ia~G~~-----HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L--~~~~I~~ 529 (1858)
...+.....-....|..++.... ..+....||.|+.|-...... . ....+... ....|..
T Consensus 195 ---~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~----~------~~~~~~~~~~~~~~v~~ 261 (379)
T 3jrp_A 195 ---TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG----P------WKKTLLKEEKFPDVLWR 261 (379)
T ss_dssp ---EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS----C------CEEEESSSSCCSSCEEE
T ss_pred ---ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc----c------ceeeeeccccCCCcEEE
Confidence 11111111112346778877643 334444689999997543210 0 00111111 2234666
Q ss_pred EEecCcceEEEeecCCCCcEEeecc
Q psy15269 530 ICAGSLFSIAYTVPPSNSALSSAFT 554 (1858)
Q Consensus 530 Ia~G~~hS~alt~~~~dG~vy~WG~ 554 (1858)
++...+..++++. ..||.++.|-.
T Consensus 262 ~~~s~~g~~l~~~-~~dg~i~iw~~ 285 (379)
T 3jrp_A 262 ASWSLSGNVLALS-GGDNKVTLWKE 285 (379)
T ss_dssp EEECSSSCCEEEE-ESSSSEEEEEE
T ss_pred EEEcCCCCEEEEe-cCCCcEEEEeC
Confidence 6665555444442 25888888843
No 220
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=27.59 E-value=82 Score=43.25 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=54.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhh----CCC----eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc-ccCCC-C
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD----SNM----MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD-FIGND-F 1151 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~----~g~----~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA-ARGLD-I 1151 (1858)
+.++||.++|+.-+..+++.+++ .++ .+..+||+.+ ..+|.+.++.+++ .+|+|+|+-. .+-+. +
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~---~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L 173 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIP---KREKENFMQNLRN--FKIVITTTQFLSKHYREL 173 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCC---SHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCC---hhhHHHHHhhccC--CCEEEEcHHHHHHHHHHh
Confidence 37899999999999888888774 466 8999999998 7777777777777 8999999721 11111 4
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 174 ~~l~~lV 180 (1054)
T 1gku_B 174 GHFDFIF 180 (1054)
T ss_dssp CCCSEEE
T ss_pred ccCCEEE
Confidence 4666666
No 221
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=27.39 E-value=6.6e+02 Score=27.67 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=54.8
Q ss_pred cEEEEEecC--ceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEc-CceEEEEEeCCeEEEEeCCCCC
Q psy15269 426 RVRKVCAGT--SFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIG-DSHVLALSQYNEVYAWGSNTMG 502 (1858)
Q Consensus 426 ~Iv~IaaG~--~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G-~~HtlALt~dG~VYaWG~N~~G 502 (1858)
.|..|+... ...+.-..||.+..|-+.... ....+.. ...|..++.- ..+.++...+|.|+.|-....-
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~------~~~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK------HLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTE------EEEEEEC--SSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc------eeeeecC--CceEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 455555432 344445678999999732111 0111111 2345555554 3345566678999999754321
Q ss_pred CCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 503 QCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 503 QLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
.+..-.. . ............|..++-..+..++++ ...||.|+.|
T Consensus 289 ~~~~~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s-gs~Dg~v~iW 333 (340)
T 4aow_A 289 IVDELKQ-E---VISTSSKAEPPQCTSLAWSADGQTLFA-GYTDNLVRVW 333 (340)
T ss_dssp EEEEECC-C----------CCCCCEEEEEECTTSSEEEE-EETTSCEEEE
T ss_pred EEEeccc-c---ceeeeccCCCCCEEEEEECCCCCEEEE-EeCCCEEEEE
Confidence 1100000 0 000000112234666666555555554 2378999888
No 222
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=27.05 E-value=7.9e+02 Score=28.49 Aligned_cols=245 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred EEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCC------------------CcEEEEEecCceEEEEEeCCe
Q psy15269 281 VLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYG------------------KRVTQVSAGHSHSAAVTEDGL 342 (1858)
Q Consensus 281 tlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~------------------~~IvqVa~G~~HS~aLT~dG~ 342 (1858)
+++.+.||+.++.|.+ +..-.-..........+...... ..-+..+....+.+.-..||.
T Consensus 69 ~v~fspdg~~la~g~~--~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~ 146 (393)
T 1erj_A 69 CVKFSNDGEYLATGCN--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 146 (393)
T ss_dssp EEEECTTSSEEEEECB--SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSC
T ss_pred EEEECCCCCEEEEEcC--CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCe
Q ss_pred EEEEecCCCCCCCCCCCCccccccccccCCC-ceEEee--cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEe
Q psy15269 343 LYTWGEGDHGRLGHGDLKSRHTPTLVTELSD-VGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVI 419 (1858)
Q Consensus 343 VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~-I~~IAc--G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V 419 (1858)
|..| +.........+..-.. |..++. ...+.+.-..|| +|..| +.........+
T Consensus 147 i~iw-----------d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~v~iw-----------d~~~~~~~~~~ 203 (393)
T 1erj_A 147 IRIW-----------DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR-TVRIW-----------DLRTGQCSLTL 203 (393)
T ss_dssp EEEE-----------ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-EEEEE-----------ETTTTEEEEEE
T ss_pred EEEE-----------ECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCC-cEEEE-----------ECCCCeeEEEE
Q ss_pred eecccccEEEEEe-cCceEEEEecCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEE--cCceEEEEEeCCeEEEE
Q psy15269 420 EALRKFRVRKVCA-GTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSI--GDSHVLALSQYNEVYAW 496 (1858)
Q Consensus 420 ~~l~~~~Iv~Iaa-G~~hSlALT~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~--G~~HtlALt~dG~VYaW 496 (1858)
..........+.. .....+.-..||.|..|-...+........+.....-....|..++. .+.+.+.-..||.|..|
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Q ss_pred eCCCCCCCCCCCCCCCcccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 497 GSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 497 G~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
-.......................+-.+. |..++...+..++++ ...|+.++.|
T Consensus 284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s-gs~D~~v~iw 337 (393)
T 1erj_A 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDF-VLSVATTQNDEYILS-GSKDRGVLFW 337 (393)
T ss_dssp EC---------------CEEEEEECCSSC-EEEEEECGGGCEEEE-EETTSEEEEE
T ss_pred ECCCCCCcccccCCCCCcceEEEecccCc-EEEEEECCCCCEEEE-EeCCCeEEEE
No 223
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=26.40 E-value=2.7e+02 Score=31.22 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.3
Q ss_pred ccceeeCCeEEEEcCCC
Q psy15269 181 TDISVAHSKVYTWGCNL 197 (1858)
Q Consensus 181 t~~a~s~g~Vy~WGsN~ 197 (1858)
+.++..++++|++|-..
T Consensus 56 ~~~~~~~~~l~v~GG~~ 72 (301)
T 2vpj_A 56 VASVSLHDRIYVIGGYD 72 (301)
T ss_dssp CEEEEETTEEEEECCBC
T ss_pred ccEEEECCEEEEEcCCC
Confidence 44555789999999643
No 224
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=26.31 E-value=76 Score=32.73 Aligned_cols=84 Identities=8% Similarity=0.019 Sum_probs=49.6
Q ss_pred cHhHHHHHHHhcCCCEEEEEccCCccc---EEEEEEECChhhHHHHHHHhhcC-CcEEEEecChHHHHHHHHHHhhCCCe
Q psy15269 1033 WGDIEEESNIEVEDPIMKLVKPSSVHL---VKQYLIRTPKSQKIVNLLSFLEG-KRSLIFVKTYRDASRIISAVQDSNMM 1108 (1858)
Q Consensus 1033 p~~I~~la~~~L~dpv~I~v~~~~~~~---I~Q~~~~v~~~~Kl~~Ll~lL~~-~k~IIFvnTk~~ad~L~~~L~~~g~~ 1108 (1858)
+++++++.+..-.+.+.|.+.....-. |.. .+.++-.+-...+...+.. ..+||+|++-.++...+..|+..|+.
T Consensus 4 ~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpg-Ai~ip~~~l~~~~~~~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~ 82 (141)
T 3ilm_A 4 AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMG-AMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFE 82 (141)
T ss_dssp HHHHHHHHHHSCSCEEEEECSCHHHHHHCEETT-CEECCGGGHHHHHHTTSCTTSEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCC-CEEcCHHHHHHHHHhcCCCCCeEEEEECCChHHHHHHHHHHHcCCC
Confidence 445555444322345566664322111 211 1234443322333334443 67899999999999999999999995
Q ss_pred -EEEEecCCC
Q psy15269 1109 -TIPMSNNGT 1117 (1858)
Q Consensus 1109 -~~~LHG~ms 1117 (1858)
+..|.|++.
T Consensus 83 ~v~~l~GG~~ 92 (141)
T 3ilm_A 83 HVSELKGGLA 92 (141)
T ss_dssp SEEECTTHHH
T ss_pred CEEEecCHHH
Confidence 888888874
No 225
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=26.21 E-value=40 Score=37.35 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=48.1
Q ss_pred CcEEEEecChHHHHHHHHHHhhC----CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEeccc-----ccc---CCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLS-----DFI---GND 1150 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~----g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDV-----AAR---GLD 1150 (1858)
.++||.++|+.-++..++.+++. ++.+..++|+.. ...+ ......+..+|+|+|.- ..+ .++
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 172 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAV---AAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGID 172 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHH---HHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCcc---HHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcc
Confidence 57999999999999988888763 778888887643 2111 11224567899999942 222 467
Q ss_pred CCCcceEE
Q psy15269 1151 FTNVEQVI 1158 (1858)
Q Consensus 1151 Ip~V~~VI 1158 (1858)
+.++++||
T Consensus 173 ~~~~~~lV 180 (245)
T 3dkp_A 173 LASVEWLV 180 (245)
T ss_dssp CTTCCEEE
T ss_pred cccCcEEE
Confidence 77777766
No 226
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=25.48 E-value=9.6e+02 Score=28.94 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=120.1
Q ss_pred CCeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeecC-ccCcceEEEEEecCcEEEEEeeCCcEEEEeC
Q psy15269 219 SNIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPL-EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGV 295 (1858)
Q Consensus 219 ~~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~-~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~ 295 (1858)
..|..++... ...+.-..||.+..|-.+ + .....+.. ...+..+. ++..+.+.+.-..+|.+..|-.
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~--~-------~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRN--G-------QHLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT--S-------CEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCC--C-------CeeEEEeCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEcC
Confidence 3566666543 334444577888888421 0 00111111 11222222 2223445555667888888853
Q ss_pred CCCCCcCCCCCcccccceeeecCCCCCcEEEEEec--CceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCC
Q psy15269 296 GEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAG--HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD 373 (1858)
Q Consensus 296 N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G--~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~ 373 (1858)
+ +++ ...+.. ....|..++.. ..+.+.-..+|.|+.|-.+ |++ ..........
T Consensus 374 ~--~~~----------~~~~~~--~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~---------~~~~~~~~~~ 428 (577)
T 2ymu_A 374 N--GQL----------LQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL---------LQTLTGHSSS 428 (577)
T ss_dssp T--CCE----------EEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCE---------EEEEECCSSC
T ss_pred C--CCE----------EEEecC--CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE---------EEEecCCCCC
Confidence 2 111 111111 23446666543 3445555678899999432 221 0001111123
Q ss_pred ceEEeec--CceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCc--eEEEEecCCcEEEE
Q psy15269 374 VGAVSCG--ESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTS--FSVALTWDGLVFWW 449 (1858)
Q Consensus 374 I~~IAcG--~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~--hSlALT~dG~Vy~W 449 (1858)
|..++.. ....+.-..+| +|..|-.+ +++ ...+.. ....|..++...+ ..+.-..||.|+.|
T Consensus 429 v~~~~~s~d~~~l~~~~~d~-~v~~w~~~--~~~----------~~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw 494 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASASDDK-TVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW 494 (577)
T ss_dssp EEEEEECTTSSEEEEEETTS-EEEEEETT--SCE----------EEEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eEEEEECCCCCEEEEEcCCC-EEEEEECC--CCE----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 5444433 22333345667 58888421 110 011111 1234555554432 33344578889999
Q ss_pred eCCCCCCCccccccEEecCCCCCCEEEEEEcCc--eEEEEEeCCeEEEEeCCCCCCCCCCCCCCCcccCeeeecCCCceE
Q psy15269 450 GLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDS--HVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCV 527 (1858)
Q Consensus 450 GLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~--HtlALt~dG~VYaWG~N~~GQLG~G~~~~~vs~P~~V~~L~~~~I 527 (1858)
-.. .. ....+.. ....|..++...+ +.+.-..||.|+.|-. .|++ ...+.+ ....|
T Consensus 495 ~~~----~~---~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~--~~~~-----------~~~~~~-h~~~v 552 (577)
T 2ymu_A 495 NRN----GQ---LLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL-----------LQTLTG-HSSSV 552 (577)
T ss_dssp ETT----SC---EEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECT--TSCE-----------EEEEEC-CSSCE
T ss_pred cCC----CC---EEEEEeC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC--CCCE-----------EEEEcC-CCCCE
Confidence 721 00 1112222 2346777776533 3344456899999953 1210 111111 12346
Q ss_pred EEEEecCcceEEEeecCCCCcEEee
Q psy15269 528 RQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 528 ~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
..++-..+-.++++. ..|+.+..|
T Consensus 553 ~~~~fs~dg~~l~s~-~~D~~i~~W 576 (577)
T 2ymu_A 553 WGVAFSPDGQTIASA-SSDKTVKLW 576 (577)
T ss_dssp EEEEECTTSSCEEEE-ETTSCEEEE
T ss_pred EEEEEcCCCCEEEEE-eCCCEEEEe
Confidence 666655544444442 367888777
No 227
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=24.47 E-value=1.4e+02 Score=34.81 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=48.2
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDIp 1152 (1858)
.++||.++|+.-++...+.+++ .++.+..++|+.+ ..++...+. ..+|+|+|.-. .+.++..
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~ 161 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS---FVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTD 161 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCC---HHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCc---hHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchh
Confidence 6899999999998888877764 4788999999987 555544443 46899999522 1234455
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 162 ~~~~vI 167 (394)
T 1fuu_A 162 KIKMFI 167 (394)
T ss_dssp TCCEEE
T ss_pred hCcEEE
Confidence 555555
No 228
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=24.12 E-value=7.2e+02 Score=27.01 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=58.8
Q ss_pred CeEEEEEcC--CEEEEEecCCcEEEEcccccCCCCCCCCCCceeec-CccCcceEEEEEec----CcEEEEEeeCCcEEE
Q psy15269 220 NIRHIEAGQ--FCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVP-LEAAIVSLSVSKCS----EAHVLTVTSEGEVYS 292 (1858)
Q Consensus 220 ~IkqVA~G~--~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~-~~~~i~~Is~Ia~G----~~HtlaLT~dG~Vys 292 (1858)
.|..++... ...+.-..||.|..|-.. .+.. ....+. +......|..++.. ....+.-..||.|..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLD---KDTS----NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEEC---SSSC----CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECC---CCCC----cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 466666533 334444678999888421 1100 001110 11112233433332 345556677999999
Q ss_pred EeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecC----ceEEEEEeCCeEEEEecC
Q psy15269 293 WGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGH----SHSAAVTEDGLLYTWGEG 349 (1858)
Q Consensus 293 WG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~----~HS~aLT~dG~VYtWG~N 349 (1858)
|-.+.......+ ....+..... .....|..++... .+.+.-+.+|.|+.|-..
T Consensus 86 wd~~~~~~~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 86 WEEDPDQEECSG---RRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEECTTSCTTSS---CSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EecCCCcccccc---cCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 976543211100 0001111111 2345677777653 456667789999999644
No 229
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=23.66 E-value=94 Score=35.49 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.1
Q ss_pred cccceeeCCeEEEEcC
Q psy15269 180 DTDISVAHSKVYTWGC 195 (1858)
Q Consensus 180 ~t~~a~s~g~Vy~WGs 195 (1858)
.+.++..++++|++|-
T Consensus 91 ~~~~~~~~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEALNSIYVVGG 106 (315)
T ss_dssp SCEEEEETTEEEEECC
T ss_pred ceeEEEECCEEEEEeC
Confidence 3445567899999996
No 230
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=23.64 E-value=44 Score=32.82 Aligned_cols=36 Identities=3% Similarity=0.079 Sum_probs=32.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
..+++|+|.+-.++...+..|++.||++..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 367899999999999999999999999998988874
No 231
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=23.43 E-value=1.2e+02 Score=36.08 Aligned_cols=69 Identities=10% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCcEEEEecChHHHHHHHHHHhhC-CC---eEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecccc------ccCCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDS-NM---MTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSD------FIGNDF 1151 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~-g~---~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATDVA------ARGLDI 1151 (1858)
..++||.|+|+.-++...+.+++. +. .+..+||+.. ..++..... ..+|+|+|.-. ...+..
T Consensus 52 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~---~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~ 123 (494)
T 1wp9_A 52 GGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKS---PEERSKAWA-----RAKVIVATPQTIENDLLAGRISL 123 (494)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSC---HHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcc---hhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcch
Confidence 578999999999999888888764 65 8999999998 666654433 46899999522 224567
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
.++++||
T Consensus 124 ~~~~~vI 130 (494)
T 1wp9_A 124 EDVSLIV 130 (494)
T ss_dssp TSCSEEE
T ss_pred hhceEEE
Confidence 7777777
No 232
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=23.13 E-value=8.6e+02 Score=27.57 Aligned_cols=260 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCeEEEEcCCCCCCCCcCCCCCcccccccCCCCCeEEEEEcCCEEEE-Ee--cCCcEEEEcccccCCCCCCCCCCceeec
Q psy15269 187 HSKVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFL-LD--STGGLLVYGKGWLGLANTTIQPLPKRVP 263 (1858)
Q Consensus 187 ~g~Vy~WGsN~~GQLG~g~~~~~~~P~~v~~~~~IkqVA~G~~hTla-Lt--~dG~VyawG~NqLGlg~~~~~~~P~~V~ 263 (1858)
+..+|+-| ...+.+-.-.......-........+..++.......+ ++ .+|.|+.| +.........+.
T Consensus 1 ~~~l~vs~-~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~--------d~~~~~~~~~~~ 71 (391)
T 1l0q_A 1 STFAYIAN-SESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSII--------DTATNNVIATVP 71 (391)
T ss_dssp CEEEEEEE-TTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEE--------ETTTTEEEEEEE
T ss_pred CCEEEEEc-CCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEE--------ECCCCeEEEEEE
Q ss_pred CccCcceEEEEEecCcEEEEEeeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEe---cCceEEEEEeC
Q psy15269 264 LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSA---GHSHSAAVTED 340 (1858)
Q Consensus 264 ~~~~i~~Is~Ia~G~~HtlaLT~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~---G~~HS~aLT~d 340 (1858)
....+..+.-...|..-.++-..+|.|+.| +......+.....+..+..++. |..-.+.-..+
T Consensus 72 ~~~~v~~~~~spdg~~l~~~~~~~~~v~v~--------------d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVI--------------DTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEETTTTEEEEE--------------ETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT
T ss_pred CCCCccceEECCCCCEEEEEECCCCEEEEE--------------ECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCC
Q ss_pred CeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecC-ceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEe
Q psy15269 341 GLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGE-SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVI 419 (1858)
Q Consensus 341 G~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~-~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V 419 (1858)
|.|+.| .+.....+..+..+. -..++...+|+.+|+.+..+ |.+-.-+.........+
T Consensus 138 ~~v~~~--------------------d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~ 196 (391)
T 1l0q_A 138 KTVSVI--------------------NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVIDTV 196 (391)
T ss_dssp TEEEEE--------------------ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred CEEEEE--------------------ECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCeEEEEE
Q ss_pred eecccccEEEEEecCceEEEEe---cCCcEEEEeCCCCCCCccccccEEecCCCCCCEEEEEEcCceE-EEEEeCCeEEE
Q psy15269 420 EALRKFRVRKVCAGTSFSVALT---WDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHV-LALSQYNEVYA 495 (1858)
Q Consensus 420 ~~l~~~~Iv~IaaG~~hSlALT---~dG~Vy~WGLG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~Ht-lALt~dG~VYa 495 (1858)
.......-..+.....+.++.. .+|.|+.|-...+. ....+..-....-..++..+.+. +....+|.|+.
T Consensus 197 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK------ITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe------EEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEE
Q ss_pred E
Q psy15269 496 W 496 (1858)
Q Consensus 496 W 496 (1858)
|
T Consensus 271 ~ 271 (391)
T 1l0q_A 271 I 271 (391)
T ss_dssp E
T ss_pred E
No 233
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=23.06 E-value=50 Score=31.72 Aligned_cols=36 Identities=6% Similarity=0.168 Sum_probs=32.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
..++||+|++-.++...+..|++.|+++..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 367999999999999999999999999999999874
No 234
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.83 E-value=1.4e+02 Score=35.23 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=48.1
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-CCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-GNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-GLDIp 1152 (1858)
.++||.++|+.-++..++.+++ .++.+..++|+.. ..+.... ..+..+|+|+|. ...+ ..++.
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~ 162 (400)
T 1s2m_A 90 IQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTN---LRDDILR----LNETVHILVGTPGRVLDLASRKVADLS 162 (400)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSC---HHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred ccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcc---hHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccc
Confidence 5899999999998888887775 3788999999987 4333221 245789999994 2223 34556
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 163 ~~~~vI 168 (400)
T 1s2m_A 163 DCSLFI 168 (400)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 666555
No 235
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=22.82 E-value=9.7e+02 Score=28.08 Aligned_cols=297 Identities=9% Similarity=-0.053 Sum_probs=0.0
Q ss_pred cccccCCCCCeEEEEE---cCCEEEEEecCCcEEEEcccccCCCCCCCCCCceeecCccCcceEEEEE---ecCcEEEEE
Q psy15269 211 RPRLQSLPSNIRHIEA---GQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSK---CSEAHVLTV 284 (1858)
Q Consensus 211 ~P~~v~~~~~IkqVA~---G~~hTlaLt~dG~VyawG~NqLGlg~~~~~~~P~~V~~~~~i~~Is~Ia---~G~~HtlaL 284 (1858)
.+........|..|+. .....+.=..||.|+.| +......+..+.+......|..++ ......+.-
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lW--------d~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLW--------NFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEE--------CSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEE--------ECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE
Q ss_pred eeCCcEEEEeCCCCCCcCCCCCcccccceeeecCCCCCcEEEEEecCce-----EEEEEeCCeEEEEecCCCCCCCCCCC
Q psy15269 285 TSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSH-----SAAVTEDGLLYTWGEGDHGRLGHGDL 359 (1858)
Q Consensus 285 T~dG~VysWG~N~~GQLG~g~~~~~~~P~~V~~~l~~~~IvqVa~G~~H-----S~aLT~dG~VYtWG~N~~GQLG~G~~ 359 (1858)
..||.|..| .+.+..+..+..+..+ +++...+|++++.|..+ |.+-.-+.
T Consensus 184 s~D~~v~iw------------------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-g~i~~wd~ 238 (435)
T 4e54_B 184 SMEGTTRLQ------------------------DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-GNVILLNM 238 (435)
T ss_dssp CSSSCEEEE------------------------ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-SBEEEEES
T ss_pred eCCCEEEEe------------------------eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-CcEeeecc
Q ss_pred CccccccccccCCCceEEe---ecCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEEEEecCc-
Q psy15269 360 KSRHTPTLVTELSDVGAVS---CGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTS- 435 (1858)
Q Consensus 360 ~~~~~P~~V~~l~~I~~IA---cG~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~- 435 (1858)
.....-..-.....|..|+ .|....+.-..|| +|..|-.........-.... .....|..++...+
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~-~v~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~spdg 308 (435)
T 4e54_B 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ-TVKIWDLRQVRGKASFLYSL---------PHRHPVNAACFSPDG 308 (435)
T ss_dssp SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTS-BCCEEETTTCCSSSCCSBCC---------BCSSCEEECCBCTTS
T ss_pred CcceeEEEecccceEEeeeecCCCceEEEEecCcc-eeeEEecccccccceEEEee---------eccccccceeECCCC
Q ss_pred -eEEEEecCCcEEEEe--CCCCCCCccccccEEecCCCCCCEEEEEEcCceEEEEEeCCeEEEEeCCCCCCCCCCCCCCC
Q psy15269 436 -FSVALTWDGLVFWWG--LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNP 512 (1858)
Q Consensus 436 -hSlALT~dG~Vy~WG--LG~gss~~~~~~P~~V~~l~~~~Iv~Ia~G~~HtlALt~dG~VYaWG~N~~GQLG~G~~~~~ 512 (1858)
+.+.-..||.|..|- .|....................+...-..+....++...+|.++.|+..+.+.+-.=+..+.
T Consensus 309 ~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g 388 (435)
T 4e54_B 309 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG 388 (435)
T ss_dssp SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC
T ss_pred CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC
Q ss_pred cccCeeeecCCCceEEEEEecCcceEEEeecCCCCcEEee
Q psy15269 513 VDQPSKVVGLEDVCVRQICAGSLFSIAYTVPPSNSALSSA 552 (1858)
Q Consensus 513 vs~P~~V~~L~~~~I~~Ia~G~~hS~alt~~~~dG~vy~W 552 (1858)
.........-......-.+...+-.++.+. .|+.+..|
T Consensus 389 ~~~~~l~~~~~~~v~s~~~fspdg~~lasg--~d~~i~iW 426 (435)
T 4e54_B 389 KMMCQLYDPESSGISSLNEFNPMGDTLASA--MGYHILIW 426 (435)
T ss_dssp CEEEEECCSSCCCCCCEEEECTTSSCEEEE--CSSEEEEC
T ss_pred cEEEEEeCCCCCcEEEEEEECCCCCEEEEE--cCCcEEEE
No 236
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=22.69 E-value=52 Score=31.18 Aligned_cols=35 Identities=3% Similarity=-0.039 Sum_probs=32.0
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
.+++|+|++-.++...+..|++.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999999999999999999999888899886
No 237
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=22.69 E-value=48 Score=36.05 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=46.1
Q ss_pred CcEEEEecChHHHHHHHHHHhhC--------CCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-C
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDS--------NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-G 1148 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~--------g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-G 1148 (1858)
.++||.++|+.-++..++.+++. ++.+..++|+.+ ..++. +.+ ....+|+|+|. ...+ .
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~ 145 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTD---KQKAL---EKL-NVQPHIVIGTPGRINDFIREQA 145 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSH---HHHTT---CCC-SSCCSEEEECHHHHHHHHHTTC
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCC---HHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCC
Confidence 58999999999998888877652 688999999875 33221 111 23578999995 2222 3
Q ss_pred CCCCCcceEE
Q psy15269 1149 NDFTNVEQVI 1158 (1858)
Q Consensus 1149 LDIp~V~~VI 1158 (1858)
++..++++||
T Consensus 146 ~~~~~~~~lV 155 (219)
T 1q0u_A 146 LDVHTAHILV 155 (219)
T ss_dssp CCGGGCCEEE
T ss_pred CCcCcceEEE
Confidence 4555565555
No 238
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=22.62 E-value=7.5e+02 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=10.8
Q ss_pred ceEEEEEcCCCEEEEEeC
Q psy15269 382 SHTLVLSQDGHTVWSMGS 399 (1858)
Q Consensus 382 ~HTlaLt~dG~tVysWG~ 399 (1858)
-+.++++.+|+ +|....
T Consensus 143 ~~~i~~~~~g~-l~v~~~ 159 (299)
T 2z2n_A 143 PSFITLGSDNA-LWFTEN 159 (299)
T ss_dssp EEEEEECTTSC-EEEEET
T ss_pred CceEEEcCCCC-EEEEeC
Confidence 35667777775 776543
No 239
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=22.21 E-value=9e+02 Score=29.46 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=40.2
Q ss_pred CCcEEEEEecCceEEEEEeCCe-EEEEecCCCCCCCCCCCCccccccccccCCCceEEeec---------CceEEEEEcC
Q psy15269 321 GKRVTQVSAGHSHSAAVTEDGL-LYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCG---------ESHTLVLSQD 390 (1858)
Q Consensus 321 ~~~IvqVa~G~~HS~aLT~dG~-VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG---------~~HTlaLt~d 390 (1858)
.+.+..|..|...-++++.||+ +|+.-.. +++...|.......-.-.....-+..|..+ .-|.++++.|
T Consensus 109 ~~vv~~I~vG~~Pgia~SpDgk~lyVan~~-~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD 187 (426)
T 3c75_H 109 GRILGMTDGGFLPHPVAAEDGSFFAQASTV-FERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD 187 (426)
T ss_dssp TEEEEEEEECSSCEEEECTTSSCEEEEEEE-EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT
T ss_pred CEEEEEEECCCCCceEECCCCCEEEEEecc-ccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC
Confidence 3456778888877888888886 6664210 000000100000000001111124455554 4578999999
Q ss_pred CCEEEEEe
Q psy15269 391 GHTVWSMG 398 (1858)
Q Consensus 391 G~tVysWG 398 (1858)
|+.+|+..
T Consensus 188 Gk~lyV~n 195 (426)
T 3c75_H 188 NKNLLFYQ 195 (426)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 98788774
No 240
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=22.21 E-value=8.3e+02 Score=27.05 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=15.0
Q ss_pred EEEEEEcCceEEEEEeCCe-EEEEeC
Q psy15269 474 IVDVSIGDSHVLALSQYNE-VYAWGS 498 (1858)
Q Consensus 474 Iv~Ia~G~~HtlALt~dG~-VYaWG~ 498 (1858)
+..+..+....++++.+|+ +|+-+.
T Consensus 266 ~~~~~~~~~~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 266 LAKVAAPESLAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEEEECSSCCCEEEETTTTEEEEEET
T ss_pred EEEEEcCCCceEEECCCCCEEEEEEC
Confidence 4445555556677777776 666553
No 241
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=22.06 E-value=6e+02 Score=30.68 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=58.0
Q ss_pred EEEEEecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCC
Q psy15269 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLG 403 (1858)
Q Consensus 324 IvqVa~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~G 403 (1858)
|.++++ +...+++..+|.|..|=-....+. .. .... -..+..+.+.....++++.+| .|+.|--.+ +
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~---~~---~~~~----~~~v~~i~~~~p~~av~~~dG-~L~v~dl~~-~ 156 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF---RT---VTSF----EKPVFQLKNVNNTLVILNSVN-DLSALDLRT-K 156 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE---EE---EEEC----SSCEEEEEECSSEEEEEETTS-EEEEEETTT-C
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc---Cc---ccee----ecceeeEEecCCCEEEEECCC-CEEEEEccC-C
Confidence 999999 777777789999999965433221 10 0000 012445555555577788999 599995332 1
Q ss_pred CCCCCCCCceeccEEeeecccccEEEEEecCceEEEEecCCcEEEEe
Q psy15269 404 KLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 404 QLG~g~~~~~~~P~~V~~l~~~~Iv~IaaG~~hSlALT~dG~Vy~WG 450 (1858)
++ .+ + ...|..|+-...-.++...||++..|=
T Consensus 157 ~~---------~~--~----~~~Vs~v~WSpkG~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 157 ST---------KQ--L----AQNVTSFDVTNSQLAVLLKDRSFQSFA 188 (388)
T ss_dssp CE---------EE--E----EESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cc---------cc--c----cCCceEEEEcCCceEEEEcCCcEEEEc
Confidence 11 01 1 124666666555555666677766663
No 242
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=21.65 E-value=1.2e+02 Score=36.80 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=48.3
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----ccccC-CCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFIG-NDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAARG-LDIp 1152 (1858)
.++||.++|+.-+..+++.+++ .++.+..++|+.+ ..++... .+ ...+|+|+|. ...++ +++.
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~---~~~~~~~---l~-~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTS---FRHQNEC---IT-RGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSC---HHHHHHH---HT-TCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCC---HHHHHHH---hh-cCCCEEEEChHHHHHHHHhCCcccc
Confidence 5899999999999998888775 3678899999987 5444332 23 3589999995 22232 4455
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
++++||
T Consensus 203 ~~~~lV 208 (434)
T 2db3_A 203 DTRFVV 208 (434)
T ss_dssp TCCEEE
T ss_pred cCCeEE
Confidence 555554
No 243
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=21.43 E-value=1.7e+02 Score=34.61 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=48.8
Q ss_pred CcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-CCCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-GNDFT 1152 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-GLDIp 1152 (1858)
.++||.++|+.-+..+++.+++ .++.+..++|+.. ..++...+. . ...|+|+|. ...+ .++..
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~---~-~~~ivv~Tp~~l~~~l~~~~~~~~ 178 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTN---VGEDIRKLD---Y-GQHVVAGTPGRVFDMIRRRSLRTR 178 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSC---HHHHHHHHH---H-CCSEEEECHHHHHHHHHTTSSCCT
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCC---HHHHHHHhh---c-CCCEEEcCHHHHHHHHHhCCccHh
Confidence 7899999999999988887765 4678899999987 555444332 2 468999994 3333 34555
Q ss_pred CcceEE
Q psy15269 1153 NVEQVI 1158 (1858)
Q Consensus 1153 ~V~~VI 1158 (1858)
.+++||
T Consensus 179 ~~~~vV 184 (410)
T 2j0s_A 179 AIKMLV 184 (410)
T ss_dssp TCCEEE
T ss_pred heeEEE
Confidence 566555
No 244
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=21.21 E-value=1.5e+02 Score=34.90 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=50.2
Q ss_pred CCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc-----cccc-CCCC
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL-----SDFI-GNDF 1151 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD-----VAAR-GLDI 1151 (1858)
..++||.++|+.-++.+++.+++ .+..+..++|+.. ...+ ++.++.+..+|+|+|. ...+ .++.
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~ 181 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN---VRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSP 181 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTT---HHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCS
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcc---hHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccc
Confidence 36899999999998888888775 4678888888876 3333 4556768899999995 2222 3455
Q ss_pred CCcceEE
Q psy15269 1152 TNVEQVI 1158 (1858)
Q Consensus 1152 p~V~~VI 1158 (1858)
..+++||
T Consensus 182 ~~~~~vV 188 (414)
T 3eiq_A 182 KYIKMFV 188 (414)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 5555554
No 245
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=20.96 E-value=5.4e+02 Score=29.46 Aligned_cols=149 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred CceEEEEEeCCeEEEEecCCCCCCCCCCCCc-cccccccccCCCceEEeecCceEEEEEcCCCEEEEEeCCCCCCCCC--
Q psy15269 331 HSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS-RHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH-- 407 (1858)
Q Consensus 331 ~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~-~~~P~~V~~l~~I~~IAcG~~HTlaLt~dG~tVysWG~N~~GQLG~-- 407 (1858)
..|++++- +++||++|-.....+-.-+... ......+..++. ..-..|++++..+- +|++| |.
T Consensus 11 ~~~~~~~~-~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~----~~R~~~~~~~~~~~--lyv~G-------G~~~ 76 (357)
T 2uvk_A 11 KSGTGAID-NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG----GPRDQATSAFIDGN--LYVFG-------GIGK 76 (357)
T ss_dssp CSCEEEEE-TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT----CCCBSCEEEEETTE--EEEEC-------CEEE
T ss_pred cceEEEEE-CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC----CcCccceEEEECCE--EEEEc-------CCCC
Q ss_pred --CCCCceeccEEeeecccccEEEE-----EecCceEEEEecCCcEEEEeCCCCCCCcc---------------------
Q psy15269 408 --EDTGKVTTPKVIEALRKFRVRKV-----CAGTSFSVALTWDGLVFWWGLGLRSSSIS--------------------- 459 (1858)
Q Consensus 408 --g~~~~~~~P~~V~~l~~~~Iv~I-----aaG~~hSlALT~dG~Vy~WGLG~gss~~~--------------------- 459 (1858)
........-..+-.+.......+ ..-..|+++. .+|++|++| |.....
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~G---G~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTG---GVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEE---CCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEe---CcCCCcCcccccchhhcCCcccchhhh
Q ss_pred -------------ccccEEecCCCCCCEEEEEE----cCceEEEEEeCCeEEEEe
Q psy15269 460 -------------FHTPVLVTGLSSHQIVDVSI----GDSHVLALSQYNEVYAWG 497 (1858)
Q Consensus 460 -------------~~~P~~V~~l~~~~Iv~Ia~----G~~HtlALt~dG~VYaWG 497 (1858)
...-..+-.+.......+.. ...+..+...+|++|.+|
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~G 207 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLIN 207 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEEC
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEe
No 246
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=20.94 E-value=50 Score=31.83 Aligned_cols=35 Identities=3% Similarity=0.077 Sum_probs=31.9
Q ss_pred CcEEEEecChHHHHHHHHHHhhCCCeEEEEecCCC
Q psy15269 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGT 1117 (1858)
Q Consensus 1083 ~k~IIFvnTk~~ad~L~~~L~~~g~~~~~LHG~ms 1117 (1858)
.++||+|++-.++...+..|++.|+++..+.|++.
T Consensus 57 ~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 67999999998999999999999999999999874
No 247
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.71 E-value=1e+03 Score=27.53 Aligned_cols=214 Identities=13% Similarity=0.108 Sum_probs=107.3
Q ss_pred EEEcCCEEEEEecCCcEEEEcccccCCCCCCCC--CCceeecCc--cCcceEEEEEe--cCcEEEEEeeCCcEEEEeCCC
Q psy15269 224 IEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQ--PLPKRVPLE--AAIVSLSVSKC--SEAHVLTVTSEGEVYSWGVGE 297 (1858)
Q Consensus 224 VA~G~~hTlaLt~dG~VyawG~NqLGlg~~~~~--~~P~~V~~~--~~i~~Is~Ia~--G~~HtlaLT~dG~VysWG~N~ 297 (1858)
++.+..+.+++++.|.+|..--..+-....... +....+.+. +.+..+..+.. ...+.+++|++|.++-.-..+
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~ 133 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTD 133 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHH
Confidence 445667889999999999885432211111111 111122333 23333322110 345788999999999887655
Q ss_pred CCCc-CCCCCcccccceeeecCCCCCcEEEEE--ecCceEEEEEeCCeEEEEecCCCCCCCCCCCCccccccccccCCCc
Q psy15269 298 HGKL-GHGNTLSQRRPKLIMGGLYGKRVTQVS--AGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDV 374 (1858)
Q Consensus 298 ~GQL-G~g~~~~~~~P~~V~~~l~~~~IvqVa--~G~~HS~aLT~dG~VYtWG~N~~GQLG~G~~~~~~~P~~V~~l~~I 374 (1858)
+-.. +.| ......-.+..++.+. .+..+.+++|++|.++-+-.++.-..|.+...... ..+..-..|
T Consensus 134 ~~~~r~~G--------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~--i~L~~~d~v 203 (312)
T 1suu_A 134 FKAVKSRG--------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCG--MKLKEGDLF 203 (312)
T ss_dssp GCC----C--------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEEC--CCCCTTCCE
T ss_pred hhccCCCc--------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEe--EEeCCCCEE
Confidence 4211 111 1111111244555544 35678899999999998876554333332211110 011111224
Q ss_pred eEEee--cCceEEEEEcCCCEEEEEeCCCCCCCCCCCCCceeccEEeeecccccEEE--EEecCceEEEEecCCcEEEEe
Q psy15269 375 GAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRK--VCAGTSFSVALTWDGLVFWWG 450 (1858)
Q Consensus 375 ~~IAc--G~~HTlaLt~dG~tVysWG~N~~GQLG~g~~~~~~~P~~V~~l~~~~Iv~--IaaG~~hSlALT~dG~Vy~WG 450 (1858)
..+.. ...+.++++++| ...-.--.++-..+++..... .....+ -.+..++. ........+++|++|.+.-.-
T Consensus 204 v~~~~v~~~~~l~~vt~~G-~~kr~~~~e~~~~~R~~kGv~-~~~~~k-~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~ 280 (312)
T 1suu_A 204 VKVLSVKENPYLLIVSENG-YGKRLNMSKISELKRGATGYT-SYKKSD-KKAGSVVDAIAVSEDDEILLVSKRSKALRTV 280 (312)
T ss_dssp EEEEECTTCSEEEEEETTS-EEEEEEGGGSCBCCTTCCCEE-CSCTTC-TTTCSEEEEEEECTTCEEEEEETTCEEEEEE
T ss_pred EEEEEECCCCeEEEEECCC-ceEEEEHHHhcccCCCCCCEE-eeEccC-CCCCeEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 44322 345678888899 477776666655555433211 111000 01122332 223556677888888776654
No 248
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=20.41 E-value=1.5e+02 Score=33.71 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=41.9
Q ss_pred CCcEEEEecChHHHHHHHHHHhh----CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCcEEEecc
Q psy15269 1082 GKRSLIFVKTYRDASRIISAVQD----SNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143 (1858)
Q Consensus 1082 ~~k~IIFvnTk~~ad~L~~~L~~----~g~~~~~LHG~ms~~~Q~eR~~~L~~Fr~G~~~ILVATD 1143 (1858)
..++||.++|+.-++..++.+++ .+..+..+||+.+ ..++.. .++ ..+|+|+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~--~~~i~v~T~ 113 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMP---YKAQIN---RVR--NADIVVATP 113 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSC---HHHHHH---HHT--TCSEEEECH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcc---hHHHHh---hcC--CCCEEEECH
Confidence 47899999999999988888875 4678999999987 554433 233 378999995
Done!