RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15269
(1858 letters)
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is found
in the HERC1, a large protein related to chromosome
condensation regulator RCC1. It is widely expressed in
many tissues, playing an important role in intracellular
membrane trafficking in the cytoplasm as well as Golgi
apparatus. HERC1 also interacts with tuberous sclerosis 2
(TSC2, tuberin), which suppresses cell growth, and
results in the destabilization of TSC2. However, the
biological function of HERC1 has yet to be defined.
Length = 160
Score = 232 bits (595), Expect = 2e-70
Identities = 97/162 (59%), Positives = 127/162 (78%), Gaps = 5/162 (3%)
Query: 1412 VSFDKEKC-VCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFLIVNEHKGNEGTCI 1470
SFD EK CC VE GG L+H G RGYG+A G++ G YQWKF +V +++G+EGTC+
Sbjct: 2 ASFDPEKSTKCCVVENGGT-LVHSSGGRGYGLAATGLSSGTYQWKFYLVKDNRGDEGTCV 60
Query: 1471 GVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQT-TMLPSFTQGDYITVVLDMDAQTLS 1529
GV+R P+ D+++RT+ DMWLYRAY+GN+YH+GE+ + P FTQGDYIT VLDM+ +TLS
Sbjct: 61 GVSRKPVTDFSYRTSSDMWLYRAYNGNLYHNGEKLSRLSPKFTQGDYITCVLDMEERTLS 120
Query: 1530 FGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDM 1571
FGKNGEEP +AF+D+D++ LYP V+FYS+N GEKVKI DM
Sbjct: 121 FGKNGEEPGVAFEDVDST-ELYPCVMFYSSN-PGEKVKIKDM 160
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 133 bits (337), Expect = 1e-32
Identities = 102/407 (25%), Positives = 164/407 (40%), Gaps = 53/407 (13%)
Query: 163 NTDIDSTSTPKLTYNIGDTDISVAH-------SKVYTWGCNLHHQI-LDEVRGKCSRPRL 214
N +S P I H + VY+WG N +++ L K RP+L
Sbjct: 36 NKRARKSSIPIPWIIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQL 95
Query: 215 QSLPS----NIRHIEAGQFCTFLLDSTGGLLVYGKGWLG------LANTTIQP------- 257
+I I G + LD G L +G G + Q
Sbjct: 96 NPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFD 155
Query: 258 ------LPKRVPLEAAIVS-LSVSK--CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
P +VP ++ S L V K C + +T++G VYSWG G+LG G+ +
Sbjct: 156 DYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215
Query: 309 QRRPKLIMGGLY--GKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366
++ + L K + Q++AG H A+T +G +Y WG G+LG +
Sbjct: 216 SQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVV 275
Query: 367 LVT---ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGK----VTTPKVI 419
LV + ++ V+CG+ H+L L +DG +++ G G+LG G+ T P
Sbjct: 276 LVGDPFAIRNIKYVACGKDHSLALDEDGE-IYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRS-------SSISFHTPVLVTGLSSH 472
+ L + + AG S S+ L DG ++ +G G R +I TP ++
Sbjct: 335 QLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI-- 392
Query: 473 QIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKV 519
++ V+ G H +A + VY+WG G G V P+ +
Sbjct: 393 KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLI 439
Score = 116 bits (292), Expect = 6e-27
Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 39/300 (13%)
Query: 272 SVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGN-TLSQRRPKLIMGGLYGKR-VTQVSA 329
V++ H + VYSWG +LG GN RP+L G K + +++
Sbjct: 52 KVAQIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIAC 111
Query: 330 GHSHSAAVTEDGLLYTWGEGDHGRLG---HGDLKSRH-------------TPTLVTELS- 372
G +HS + DG LY+WG+ D G LG H D+ ++ TP V S
Sbjct: 112 GGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSS 171
Query: 373 -----DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLG---HEDTGKVTTPKVIEALRK 424
V ++CG +++L+ DG V+S G+ G+LG ++++ K + + K
Sbjct: 172 AKSHLRVVKLACGWEISVILTADGR-VYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK 230
Query: 425 FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVD-V 477
+ ++ AG +ALT +G V+ WG LG +S VLV + + + V
Sbjct: 231 KAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSE-RLKLVVLVGDPFAIRNIKYV 289
Query: 478 SIGDSHVLALSQYNEVYAWGSNTMGQCGQD-NFSNPVD--QPSKVVGLEDVCVRQICAGS 534
+ G H LAL + E+YAWG N GQ G + +P+ L V + I AG
Sbjct: 290 ACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGE 349
Score = 101 bits (253), Expect = 5e-22
Identities = 77/272 (28%), Positives = 117/272 (43%), Gaps = 25/272 (9%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLP-----SNIRHIEAGQFCTFLLDSTGGLLVYG 244
VY+WG ++ + +Q P I + AG L + G + +G
Sbjct: 197 VYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWG 256
Query: 245 ---KGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301
KG LG + L V AI ++ C + H L + +GE+Y+WGV G+L
Sbjct: 257 SNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQL 316
Query: 302 GHGN-------TLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRL 354
G G+ T +L L G + +SAG SHS + +DG LY +G GD G+L
Sbjct: 317 GAGSDGEIGALTTKPNYKQL----LSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372
Query: 355 GHGDLKSRH--TPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHED-TG 411
G + + TPT ++ + V+CG H + + DG +V+S G G G LG+
Sbjct: 373 GIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDG-SVYSWGWGEHGNLGNGPKEA 431
Query: 412 KVTTPKVI-EALRKFR-VRKVCAGTSFSVALT 441
V P +I + L + G FSV
Sbjct: 432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and the
RYanodine Receptor. Domain of unknown function. Distant
homologues are domains in butyrophilin/marenostrin/pyrin
homologues.
Length = 125
Score = 85.1 bits (211), Expect = 3e-19
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGDM---WLYRAYSGNVYHSGEQT 1505
G + ++ + G +G ++ R GD W Y G+ YH+GE
Sbjct: 1 SGKHYFEVEVDTGGGG--HVRVGWATKSVKKPGFRLLGDDEGSWGYDGSGGSKYHNGESE 58
Query: 1506 TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHL-AFQDLDTSAPLYPIVLFYSTNANGE 1564
F +GD I LD++ +SF KNG++ F++++ PLYP V + GE
Sbjct: 59 PYGLKFQEGDVIGCFLDLEEGEISFTKNGKDLGGYTFRNVEFGGPLYPAVSL---GSTGE 115
Query: 1565 KVKI 1568
V+
Sbjct: 116 AVQF 119
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor. Domain
of unknown function. Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 80.8 bits (200), Expect = 9e-18
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 1449 RGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGD---MWLYRAYSGNVYHSGEQT 1505
G + ++ I +GV + G+ W Y G YH+
Sbjct: 1 SGRHYFEVEIG----DGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGP 56
Query: 1506 TMLPSFTQ-GDYITVVLDMDAQTLSFGKNGEE-PHLAFQDLDTSAPLYPIVLFYSTN 1560
+ GD I LD++A T+SF KNG+ LAF D+ S PLYP S N
Sbjct: 57 EYGLPLQEPGDVIGCFLDLEAGTISFYKNGKYLHGLAFFDVKFSGPLYPAFSLGSGN 113
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 71.4 bits (176), Expect = 2e-15
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 287 EGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAV 337
+G VY+WG E+G+LG G+ P+L+ GL G RV QV+ G SH+ A+
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVE-GLSGVRVVQVACGASHTVAL 50
Score = 69.9 bits (172), Expect = 8e-15
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 340 DGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGA--VSCGESHTLVL 387
DG +YTWG ++G+LG GD + P LV LS V V+CG SHT+ L
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 56.0 bits (136), Expect = 7e-10
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 390 DGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVAL 440
DG V++ G G+LG D V P+++E L RV +V G S +VAL
Sbjct: 1 DGR-VYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 53.3 bits (129), Expect = 5e-09
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 492 EVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIA 539
VY WG N GQ G + + V P V GL V V Q+ G+ ++A
Sbjct: 3 RVYTWGRNEYGQLGLGDEED-VLVPQLVEGLSGVRVVQVACGASHTVA 49
Score = 45.6 bits (109), Expect = 3e-06
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 443 DGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLAL 487
DG V+ WG LGL P LV GLS ++V V+ G SH +AL
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEE-DVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 31.0 bits (71), Expect = 0.48
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRP-RLQSLPSN-IRHIEAGQFCTFLL 234
+VYTWG N + Q+ P ++ L + + G T L
Sbjct: 3 RVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in the
SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2. SPRY
domains have been identified in at least 11 protein
families, covering a wide range of functions, including
regulation of cytokine signaling (SOCS), RNA metabolism
(DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L). B30.2 also contains residues in the
N-terminus that form a distinct PRY domain structure;
i.e. B30.2 domain consists of PRY and SPRY subdomains.
B30.2 domains comprise the C-terminus of three protein
families: BTNs (receptor glycoproteins of immunoglobulin
superfamily); several TRIM proteins (composed of
RING/B-box/coiled-coil or RBCC core); Stonutoxin
(secreted poisonous protein of the stonefish Synanceia
horrida). While SPRY domains are evolutionarily ancient,
B30.2 domains are a more recent adaptation where the
SPRY/PRY combination is a possible component of immune
defense. Mutations found in the SPRY-containing proteins
have shown to cause Mediterranean fever and Opitz
syndrome.
Length = 118
Score = 74.0 bits (182), Expect = 2e-15
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 1450 GCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGD---MWLY---RAYSGNVYHSGE 1503
G + ++ + + + G +G R GD W + R G+ S
Sbjct: 1 GKWYYEVRVDSGNGGL--IQVGWATKSFSLDGERGVGDDEGSWGFDGSRLRKGHGGSSEP 58
Query: 1504 QTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSA-PLYPIVLFYSTNAN 1562
+ GD + +LD+DA TLSF NG + +AF++L PLYP V S
Sbjct: 59 GGR---PWKSGDVVGCLLDLDAGTLSFSLNGVDLGVAFENLFRKGGPLYPAVSLGS---- 111
Query: 1563 GEKVKI 1568
G+ V I
Sbjct: 112 GQGVTI 117
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4,
HECT E3 and SPRYD3. This family includes SPRY domains
found in Ran binding proteins (RBP or RanBPM) 9 and 10,
SSH4 (suppressor of SHR3 null mutation protein 4), SPRY
domain-containing protein 3 (SPRYD3) as well as HECT, a
C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as
androgen receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the SPRY
domain, and LisH-CTLH and CRA motifs. The SPRY domain in
SSH4 may be involved in cargo recognition, either
directly or by combination with other adaptors, possibly
leading to a higher selectivity. SPRYD3 is highly
expressed in most tissues in humans, possibly involved in
important cellular processes. HECT E3 mediates the direct
transfer of ubiquitin from E2 to substrate.
Length = 132
Score = 51.5 bits (124), Expect = 2e-07
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 1461 EHKGNEGTC-IGVTRWPIRDYNH-RTTGDMWLYRAYSGNVYHSGEQTTM-LPSFTQGDYI 1517
G +G IG + Y G VY G + P F GD +
Sbjct: 23 LDLGEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDGRVYLGGGEGENYGPPFGTGDVV 82
Query: 1518 TVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKI 1568
++ + F KNGE AF+++ LYP V S G KV++
Sbjct: 83 GCGINFKTGEIFFTKNGELLGTAFENVV-KGRLYPTVGLGS---PGVKVRV 129
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 47.9 bits (115), Expect = 3e-07
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 474 IVDVSIGDSHVLALSQYNEVYAWGSNTMGQ 503
+V ++ GD H LAL+ VY WG N+ GQ
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 45.6 bits (109), Expect = 2e-06
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGR 353
V ++AG H+ A+T DG +Y WG+ +G+
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 39.4 bits (93), Expect = 3e-04
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 376 AVSCGESHTLVLSQDGHTVWSMGSGNLG 403
+++ G+ HTL L+ DG TV+ G + G
Sbjct: 3 SIAAGDYHTLALTSDG-TVYCWGDNSYG 29
Score = 30.9 bits (71), Expect = 0.26
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHG 299
+VS++ + H L +TS+G VY WG +G
Sbjct: 1 VVSIA---AGDYHTLALTSDGTVYCWGDNSYG 29
Score = 28.6 bits (65), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 427 VRKVCAGTSFSVALTWDGLVFWWG 450
V + AG ++ALT DG V+ WG
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWG 24
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 53.6 bits (129), Expect = 8e-07
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 1058 HLVKQYLIRTPKSQKIVNLLSFL-----EGKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
H +KQ + + +K L L +G + LIFV+T + A + ++ + +
Sbjct: 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCI 407
Query: 1113 SNNGT----SWSHVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINH 1168
+ +W +LN F TGKS ++I T G D +V+ VI ++ P I
Sbjct: 408 HGDKKQEERTW-------VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIED 460
Query: 1169 YVFQI-----AG-HKEAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
YV +I AG + F P LA L+K+L + + VP
Sbjct: 461 YVHRIGRTGRAGAKGASYTFLTP-DKYRLARDLVKVLREAKQPVP 504
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication,
recombination, and repair / Transcription / Translation,
ribosomal structure and biogenesis].
Length = 513
Score = 51.7 bits (124), Expect = 3e-06
Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 41/202 (20%)
Query: 1035 DIEEESNIEVEDPIMKLVKP----SSVHLVKQYLIRTP----KSQKIVNLLSFLEGKRSL 1086
DI E + + DP+ V ++ +KQ+ + K + ++ LL + R +
Sbjct: 218 DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVI 277
Query: 1087 IFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKS 1136
+FV+T R + +++ V L L F G+
Sbjct: 278 VFVRTKRLVEELAESLRKRGF-------------KVAALHGDLPQEERDRALEKFKDGEL 324
Query: 1137 SLVIMTLSDFI--GNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVAD 1188
+++ T D G D +V VI Y+LPL YV +I AG K AI+F +
Sbjct: 325 RVLVAT--DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEE 382
Query: 1189 IGLASSLIKLLEYSNKHVPTHP 1210
+ + K LE P
Sbjct: 383 VKKLKRIEKRLERKLPSAVLLP 404
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium and
rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified in
at least 11 eukaryotic protein families, covering a wide
range of functions, including regulation of cytokine
signaling (SOCS), RNA metabolism (DDX1 and hnRNP),
immunity to retroviruses (TRIM5alpha), intracellular
calcium release (ryanodine receptors or RyR) and
regulatory and developmental processes (HERC1 and Ash2L).
Length = 128
Score = 47.5 bits (113), Expect = 4e-06
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 16/81 (19%)
Query: 1494 YSGNVY-HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQ---DLDTSA- 1548
SGN Y + FT GD I V LD+DA + F KNG +Q
Sbjct: 47 SSGNTYSGGSTVASFGAGFTAGDVIGVALDLDAGKIWFYKNG-----VWQGSGSPAPGTN 101
Query: 1549 ------PLYPIVLFYSTNANG 1563
+YP V S+
Sbjct: 102 PAFAGTQVYPAVTGGSSTGGS 122
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of
cytokine signaling (SOCS) proteins. This family consists
of the SPRY domain-containing SOCS box protein family
(SPSB1-4, also known as SSB-1 to -4) as well as F-box
protein 45 (Fbxo45), a novel synaptic E3 and ubiquitin
ligase. The SPSB protein is composed of a central SPRY
protein interaction domain and a C-terminal SOCS box.
SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis
response protein 4 (Par-4) and are negative regulators
that recruit the ECS E3 ubiquitin ligase complex to
polyubiquitinate inducible nitric-oxide synthase (iNOS),
resulting in its proteasomal degradation. Fbxo45 is
related to this family; it is located N-terminal to the
SPRY domain, and known to induce the degradation of a
synaptic vesicle-priming factor, Munc13-1, via the SPRY
domain, thus playing an important role in the regulation
of neurotransmission by modulating Munc13-1 at the
synapse. Suppressor of cytokine signaling (SOCS) proteins
negatively regulate signaling from JAK-associated
cytokine receptor complexes, and play key roles in the
regulation of immune homeostasis.
Length = 171
Score = 47.0 bits (112), Expect = 1e-05
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 1489 WLYRAYSGNVYHSGEQT-TMLPSFTQG------DYITVVLDMDAQTLSFGKNGEEPHLAF 1541
W + + +YH G+ P+ + D + V+LDM+ TL+F NGE +AF
Sbjct: 86 WGWDLSTNKLYHDGKVVIGSYPAGSATENYSVPDRVLVILDMEDGTLAFEANGEYLGVAF 145
Query: 1542 QDLDTSAPLYPIV 1554
+ L LYP V
Sbjct: 146 RGL-PGKLLYPAV 157
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and
10. This family includes SPRY domain in Ran binding
protein (RBP or RanBPM) 9 and 10, and similar proteins.
RanBP9 (also known as RanBPM), a binding partner of Ran,
is a small Ras-like GTPase that exerts multiple functions
via interactions with various proteins. RanBP9 and
RanBP10 also act as androgen receptor (AR) coactivators.
Both consist of the N-terminal proline- and
glutamine-rich regions, the SPRY domain, and LisH-CTLH
and CRA motifs. SPRY domain of RanBPM forms a complex
with CD39, a prototypic member of the NTPDase family,
thus down-regulating activity substantially. RanBP10
enhances the transcriptional activity of AR in a
ligand-dependent manner and exhibits a protein expression
pattern different from RanBPM in various cell lines.
RanBP10 is highly expressed in AR-positive prostate
cancer LNCaP cells, while RanBPM is abundant in WI-38 and
MCF-7 cells.
Length = 153
Score = 45.6 bits (109), Expect = 3e-05
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 1434 GPGTRGYGVANI----GITRGC--YQWKFLIVNEHKGNEGT-CIGVTRWPIRDYNHRTTG 1486
G G A + I C Y ++ I++ KG +G IG++ + N R G
Sbjct: 12 GSGKTDKDAAAVRANHPIPPQCGIYYFEVKILS--KGRDGYIGIGLST-KGVNLN-RLPG 67
Query: 1487 ---DMWLYRAYSGNVYH-SGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQ 1542
W Y G+ + SG P+FT GD I ++ T+ + KNG AF+
Sbjct: 68 WEKHSWGYHGDDGHSFSSSGTGKPYGPTFTTGDVIGCGINFVDNTIFYTKNGVNLGTAFR 127
Query: 1543 DLDTSAPLYPIVLFYSTNANGEKVK 1567
DL LYP V + GE V+
Sbjct: 128 DLPD-KNLYPTVGLRTP---GEHVE 148
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1 to
-4) is composed of a central SPRY protein interaction
domain and a C-terminal SOCS box. All four SPSB proteins
interact with c-Met, the hepatocyte growth factor
receptor, but SOCS3 regulates cellular response to a
variety of cytokines such as leukemia inhibitory factor
(LIF) and interleukin 6. SOCS3, along with SOCS1, are
expressed by immune cells and cells of the central
nervous system (CNS) and have the potential to impact
immune processes within the CNS. In non-small cell lung
cancer (NSCLC), SOCS3 is silenced and proline-rich
tyrosine kinase 2 (Pyk2) is over-expressed; it has been
suggested that SOCS3 could be an effective way to prevent
the progression of NSCLC due to its role in regulating
Pyk2 expression.
Length = 187
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 1494 YSGNVYHSGEQTTML--PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSA-PL 1550
Y G ++H+G ++ QG I V LDM + TL+F KNG+ +AF L L
Sbjct: 95 YKGLLWHNG-ESRPYTEKFGNQGTIIGVHLDMWSGTLTFYKNGKPLGVAFTGLQNDGKKL 153
Query: 1551 YPIVLFYSTNANGEKVKITDMTVCET 1576
YP+V ST A ++M +
Sbjct: 154 YPMVS--STAAK------SEMKLINA 171
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1.
This SPRY domain is associated with the DEAD box gene,
DDX1, an RNA-dependent ATPase involved in HIV-1 Rev
function and virus replication. It is suggested that DDX1
acts as a cellular cofactor by promoting oligomerization
of Rev on the Rev response element (RRE). DDX1 RNA is
overexpressed in breast cancer, data showing a strong and
independent association between poor prognosis and
deregulation of the DEAD box protein DDX1, thus
potentially serving as an effective prognostic biomarker
for early recurrence in primary breast cancer. DDX1 also
interacts with RelA and enhances nuclear factor
kappaB-mediated transcription. DEAD-box proteins are
associated with all levels of RNA metabolism and
function, and have been implicated in translation
initiation, transcription, RNA splicing, ribosome
assembly, RNA transport, and RNA decay.
Length = 155
Score = 40.6 bits (96), Expect = 0.002
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 1511 FTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSA--PLYPIV 1554
F +GD I +LD+D T+SF KNG++ +AF L+P V
Sbjct: 95 FGKGDVIGCLLDLDNGTISFSKNGKDLGVAFDIPPKLRNQALFPAV 140
>gnl|CDD|240487 cd12907, SPRY_Fbox, SPRY domain in the F-box family Fbxo45. Fbxo45
is a novel synaptic E3 and ubiquitin ligase, related to
the suppressor of cytokine signaling (SOCS) proteins and
located N-terminal to a SPRY (SPla and the ryanodine
receptor) domain. Fbxo45 induces the degradation of a
synaptic vesicle-priming factor, Munc13-1, via the SPRY
domain, thus playing an important role in the regulation
of neurotransmission by modulating Munc13-1 at the
synapse. F-box motifs are found in proteins that function
as the substrate recognition component of SCF E3
complexes.
Length = 175
Score = 39.4 bits (92), Expect = 0.006
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 1489 WLYRAYSGNVYHSGE------QTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQ 1542
W + ++ H+G+ Q P + G+ I V+LDM+ TL+F + E +AF+
Sbjct: 85 WGWNLVDNHLLHNGDVQGNYPQCNNAPKYQVGERIRVILDMEDNTLAFERGYEFLGVAFR 144
Query: 1543 DLDTSAPLYPIV 1554
L LYP V
Sbjct: 145 GL-PKVCLYPAV 155
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of heterogeneous nuclear ribonucleoprotein
U-like (hnRNP) protein 1 (also known as HNRPUL1 ) which
is a major constituent of nuclear matrix or scaffold and
binds directly to DNA sequences through the N-terminal
acidic region named serum amyloid P (SAP). Its function
is specifically modulated by E1B-55kDa in
adenovirus-infected cells. HNRPUL1 also participates in
ATR protein kinase signaling pathways during adenovirus
infection. Two transcript variants encoding different
isoforms have been found for this gene. When associated
with bromodomain-containing protein 7 (BRD7), it
activates transcription of glucocorticoid-responsive
promoter in the absence of ligand-stimulation.
Length = 176
Score = 39.1 bits (92), Expect = 0.008
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 1443 ANIGITRG--CYQWKFL--IVNEHKGNEGTCIGVTR--WPIRDYNHRTT---GDMWLYRA 1493
A G+ +G C++ K L + +H E T V R W + ++ G+ L
Sbjct: 38 ATYGVRKGKVCFEVKVLENLPVKHLPTEETDPHVVRVGWSV----DSSSLQLGEEKLSYG 93
Query: 1494 YSGN--VYHSGEQTTMLPSFTQGDYITVVLDMDAQ--TLSFGKNGEEPHLAFQDLDTS-- 1547
Y +G+ F +GD I LD++++ +SF KNG++ +AF+ +D
Sbjct: 94 YGSTGKKSTNGKFEDYGEPFGEGDVIGCYLDLESEPVEISFTKNGKDLGVAFR-IDKELE 152
Query: 1548 -APLYPIVL 1555
L+P +L
Sbjct: 153 GKALFPHIL 161
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 38.0 bits (89), Expect = 0.010
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLE-----GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSN 1114
+KQY++ + +K+ LL L+ G + LIF + + + ++ + +
Sbjct: 2 IKQYVLPV-EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHG 60
Query: 1115 NGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN--DFTNVEQVIIYNLPLSINHYVFQ 1172
+G S E E+L F G+ +++ T D I D NV VI Y+LP S + Y+ Q
Sbjct: 61 DG---SQEEREEVLKDFREGEIVVLVAT--DVIARGIDLPNVSVVINYDLPWSPSSYL-Q 114
Query: 1173 IAG 1175
G
Sbjct: 115 RIG 117
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases, whereas
this domain family is found in a wide variety of
helicases and helicase related proteins. It may be that
this is not an autonomously folding unit, but an integral
part of the helicase.
Length = 78
Score = 35.2 bits (82), Expect = 0.025
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 1126 ELLNLFNTGKSSLVIMTLSDFIGN--DFTNVEQVIIYNLPLSINHYVFQIAG 1175
E+L F GKS +++ T D G D +V VI Y+LP + Y+ Q G
Sbjct: 24 EILEDFRNGKSKVLVAT--DVAGRGIDLPDVNLVINYDLPWNPASYI-QRIG 72
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain.
Length = 82
Score = 34.9 bits (81), Expect = 0.038
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 1126 ELLNLFNTGKSSLVIMTLSDFIGN--DFTNVEQVIIYNLPLSINHYVFQIAG 1175
E+L+ FN GK +++ T D D V+ VIIY+LP S Y+ Q G
Sbjct: 28 EILDKFNNGKIKVLVAT--DVAERGLDLPGVDLVIIYDLPWSPASYI-QRIG 76
>gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine
signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4). The
SPRY domain-containing SOCS box protein family (SPSB1-4,
also known as SSB-1 to -4) is composed of a central SPRY
protein interaction domain and a C-terminal SOCS box. All
four SPSB proteins interact with c-Met, the hepatocyte
growth factor receptor, but only SPSB1, SPSB2, and SPSB4
interact with prostate apoptosis response protein 4
(Par-4). They are negative regulators that recruit the
ECS E3 ubiquitin ligase complex to polyubiquitinate
inducible nitric-oxide synthase (iNOS), resulting in its
proteasomal degradation, thus contributing to protection
against the cytotoxic effect of iNOS in activated
macrophages. It has been shown that SPSB1 and SPSB4
induce the degradation of iNOS more strongly than SPSB2.
The Drosophila melanogaster SPSB1 homolog, GUSTAVUS,
interacts with the DEAD box RNA helicase Vasa. Suppressor
of cytokine signaling (SOCS) proteins negatively regulate
signaling from JAK-associated cytokine receptor
complexes, and play key roles in the regulation of immune
homeostasis.
Length = 174
Score = 36.5 bits (85), Expect = 0.056
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 1510 SFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIV 1554
+F D VVLDMD TLSF +G+ +AF+ L LYPIV
Sbjct: 117 NFVVPDKFLVVLDMDEGTLSFVVDGQYLGVAFRGL-KGKTLYPIV 160
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 37.9 bits (88), Expect = 0.060
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 24/144 (16%)
Query: 860 MQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEP 919
MQ T+T S W + + A AL I L +LL P H + V WL+T LL P
Sbjct: 337 MQVKATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLKW---P 391
Query: 920 STAIID------IDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLI 973
T I+ ++ V D+ H+ L++ Y+ D Y + +Q KN
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHLHGQKLVT--YKGD---YDTFERTREEQLKN------- 439
Query: 974 QQTALSPREKTVLEQIFSVVNKFR 997
QQ A E++ + + ++KFR
Sbjct: 440 QQKAFESNERS-RSHMQAFIDKFR 462
>gnl|CDD|147786 pfam05823, Gp-FAR-1, Nematode fatty acid retinoid binding protein
(Gp-FAR-1). Parasitic nematodes produce at least two
structurally novel classes of small helix-rich retinol-
and fatty-acid-binding proteins that have no
counterparts in their plant or animal hosts and thus
represent potential targets for new nematicides.
Gp-FAR-1 is a member of the nematode-specific
fatty-acid- and retinol-binding (FAR) family of proteins
but localises to the surface of the organism, placing it
in a strategic position for interaction with the host.
Gp-FAR-1 functions as a broad-spectrum retinol- and
fatty-acid-binding protein, and it is thought that it is
involved in the evasion of primary host plant defence
systems.
Length = 154
Score = 35.0 bits (81), Expect = 0.15
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 960 IPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAE 999
IP +YK L+ + +++ +L+P EK L+++ KF+ E
Sbjct: 2 IPAEYKELIPAEVVEAYKSLTPEEKAALKEVAKNHKKFKNE 42
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2 mediates
the interaction with RbBP5 and has an important role in
regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 34.4 bits (80), Expect = 0.19
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 34/149 (22%)
Query: 1436 GTRGY--GVANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRW------PIRDYNHRTTGD 1487
G +GY AN G+ G + ++ I+ +G +R P+ G
Sbjct: 12 GEKGYRMARANHGVREGKWYFEVKILEGGGETGHVRVGWSRREASLQAPV--------G- 62
Query: 1488 MWLYRAYS-------GNVYHSGE-QTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHL 1539
Y YS G +H + P F +GD I ++ + + F KNG+ +
Sbjct: 63 ---YDKYSYAYRDKDGEKFHLSRGKPYGEPGFKEGDVIGCLITLP--KIEFFKNGKSQGV 117
Query: 1540 AFQDLDTSAPLYPIVLFYSTNANGEKVKI 1568
AF+D+ + YP V Y G V++
Sbjct: 118 AFEDIYGTGGYYPAVSLY----MGATVRL 142
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent
DNA helicase RecQ of E. coli is about 600 residues long.
This model represents bacterial proteins with a high
degree of similarity in domain architecture and in
primary sequence to E. coli RecQ. The model excludes
eukaryotic and archaeal proteins with RecQ-like regions,
as well as more distantly related bacterial helicases
related to RecQ [DNA metabolism, DNA replication,
recombination, and repair].
Length = 591
Score = 34.7 bits (80), Expect = 0.60
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 1068 PKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIP----MSNNGTSWS 1120
K+ K LL +L+ G+ +I+ + + + ++ + + +SN +
Sbjct: 207 KKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRA-- 264
Query: 1121 HVECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGH---- 1176
E F +++ T + +G D NV VI Y++P ++ Y +Q AG
Sbjct: 265 -----ENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESY-YQEAGRAGRD 318
Query: 1177 ---KEAIAFYDPVADIGLASSLIK 1197
EAI Y P ADI L I+
Sbjct: 319 GLPAEAILLYSP-ADIALLKRRIE 341
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at the
C-terminus of TRIM9 proteins. TRIM9 protein is expressed
mainly in the cerebral cortex, and functions as an E3
ubiquitin ligase. It has been shown that TRIM9 is
localized to the neurons in the normal human brain and
its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural differentiation,
including neuritogenesis.
Length = 172
Score = 33.4 bits (77), Expect = 0.64
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 1512 TQGDYITVVLDMDAQTLSFGKNGEEPH--LAFQDLDTSAPLYPIVLFYSTNANGEKVKIT 1569
T G I V+LD+D TLSF N EP +AF +L YP S N N V++T
Sbjct: 114 TVGSVIGVLLDLDRGTLSFYVND-EPQGPVAFTNL--PGLFYPAF---SLNRN---VQVT 164
Query: 1570 DMTVCETP 1577
T E P
Sbjct: 165 LHTGLEIP 172
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor
(RyR). This SPRY domain is the first of three structural
repeats in all three isoforms of the ryanodine receptor
(RyR), which are the major Ca2+ release channels in the
membranes of sarcoplasmic reticulum (SR). There are three
RyR genes in mammals; the skeletal RyR1, the cardiac RyR2
and the brain RyR3. The three SPRY domains are located in
the N-terminal part of the cytoplasmic region of the
RyRs, but no specific function has been found for this
first SPRY domain of the RyRs.
Length = 151
Score = 32.7 bits (75), Expect = 0.78
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 1508 LPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLF 1556
+GD + LD+ ++SF NG F++ + +P++ F
Sbjct: 92 QHLLKKGDVVGCCLDLSVPSISFRVNGRPVQGMFENFNLDGMFFPVMSF 140
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional.
Length = 518
Score = 34.0 bits (78), Expect = 0.89
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 1126 ELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI 1173
E++ F G+ +++ T G D V QVII+++P +I Y+ QI
Sbjct: 409 EVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQI 456
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the N-terminus
of RING finger protein 123 domain (also known as E3
ubiquitin-protein ligase RNF123). The ring finger domain
motif is present in a variety of functionally distinct
proteins and known to be involved in protein-protein and
protein-DNA interactions. RNF123 displays E3 ubiquitin
ligase activity toward the cyclin-dependent kinase
inhibitor p27 (Kip1).
Length = 128
Score = 31.5 bits (72), Expect = 1.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1509 PSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDL 1544
+ GD I +D+D T+SF +NG +AF ++
Sbjct: 68 EPWVAGDVIGCCIDLDEGTISFYRNGRSLGVAFDNV 103
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication,
recombination, and repair].
Length = 590
Score = 33.4 bits (77), Expect = 1.3
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 1082 GKRSLIFVKTYRDASRIISAVQDSNMMTIP----MSNNGTSWSHVECLELLNLFNTGKSS 1137
K +I+ T + + ++ + + +SN E + F +
Sbjct: 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNE-------ERERVQQAFLNDEIK 282
Query: 1138 LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYV--FQIAGH----KEAIAFYDPVADIGL 1191
+++ T + +G D +V VI Y+LP SI Y AG EAI Y P DI
Sbjct: 283 VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSP-EDIRW 341
Query: 1192 ASSLIK 1197
LI+
Sbjct: 342 QRYLIE 347
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional.
Length = 401
Score = 33.3 bits (76), Expect = 1.5
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
Query: 1046 DPIMKLVKPSSVHL--VKQYLIRTPKSQ----KIVNLLSFLEGKRSLIFVKTYRDASRII 1099
DP LVK + L ++Q+ + K + + +L L +++I+ T R +
Sbjct: 225 DPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLT 284
Query: 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQV 1157
+ + + M + + ++ F +G + ++I T D + G D V V
Sbjct: 285 KKMHERDFTVSCMHGD---MDQKDRDLIMREFRSGSTRVLITT--DLLARGIDVQQVSLV 339
Query: 1158 IIYNLPLSINHYVFQI 1173
I Y+LP S +Y+ +I
Sbjct: 340 INYDLPASPENYIHRI 355
>gnl|CDD|240473 cd12893, SPRY_PRY_TRIM35, PRY/SPRY domain in tripartite
motif-containing protein 35 (TRIM35). This PRY/SPRY
domain is found at the C-terminus of the overall domain
architecture of tripartite motif 35, TRIM35 (also known
as hemopoietic lineage switch protein), which includes a
RING finger domain (RING) and a B-box motif (BBOX).
TRIM35 may play a role as a tumor suppressor and is
implicated in the cell death mechanism.
Length = 171
Score = 31.1 bits (71), Expect = 3.4
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 1470 IGVTR---WPIRDYNHRTTGDMWLYRAYSGNVY---HSGEQTTMLPSFTQGDYITVVLDM 1523
+GV + W + Y S E +T L + I V LD
Sbjct: 69 VGVAAESVQRKGKFTSSPESGFW-SIGFYEGEYSARTSPEPSTPLRVKQKPQRIRVQLDW 127
Query: 1524 DAQTLSFGKNGEEPHL-AFQDLDTSAPLYPIVLFYSTNANGEKVKI 1568
D LSF H+ F T ++P ++ T E +KI
Sbjct: 128 DEGKLSFSDADTNTHIHTFTHTFTE-KVFP---YFYTGCKSEPLKI 169
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor
(RyR). This SPRY domain (SPRY2) is the second of three
structural repeats in all three isoforms of the ryanodine
receptor (RyR), which are the major Ca2+ release channels
in the membranes of sarcoplasmic reticulum (SR). There
are three RyR genes in mammals; the skeletal RyR1, the
cardiac RyR2 and the brain RyR3. The three SPRY domains
are located in the N-terminal part of the cytoplasmic
region of the RyRs, The SPRY2 domain has been shown to
bind to the dihydropryidine receptor (DHPR) II-III loop
and the ASI region of RyR1.
Length = 133
Score = 30.3 bits (69), Expect = 3.5
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 1514 GDYITVVLDMDAQTLSFGKNGE------EPHLAFQDLDTSAPLYPIVLFYSTNANGEKVK 1567
GD + +LD+ +T+SF NGE +AF+D++ P G+K +
Sbjct: 74 GDVVGCMLDLVDRTISFTLNGELLIDSSGSEVAFKDIEIGEGFVPACSL----GVGQKGR 129
Query: 1568 I 1568
+
Sbjct: 130 L 130
>gnl|CDD|176708 cd08360, MhqB_like_C, C-terminal domain of Burkholderia sp. NF100
MhqB and similar proteins; MhqB is a type I extradiol
dioxygenase involved in the catabolism of
methylhydroquinone, an intermediate in the degradation of
fenitrothion. This subfamily contains the C-terminal,
catalytic, domain of Burkholderia sp. NF100 MhqB and
similar proteins. MhqB is a type I extradiol dioxygenase
involved in the catabolism of methylhydroquinone, an
intermediate in the degradation of fenitrothion. The
purified enzyme has shown extradiol ring cleavage
activity toward 3-methylcatechol. Fe2+ was suggested as a
cofactor, the same as most other enzymes in the family.
Burkholderia sp. NF100 MhqB is encoded on the plasmid
pNF1. The type I family of extradiol dioxygenases
contains two structurally homologous barrel-shaped
domains at the N- and C-terminal. The active-site metal
is located in the C-terminal barrel and plays an
essential role in the catalytic mechanism.
Length = 134
Score = 30.3 bits (69), Expect = 3.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 1163 PLSINHYVFQIAGHKEAIAFY 1183
P + H V + + A AFY
Sbjct: 1 PRRLGHVVLFVPDVEAAEAFY 21
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 31.8 bits (72), Expect = 3.9
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 25/150 (16%)
Query: 1073 IVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMT------IPMSNNGTSWSHVECLE 1126
++ LLS EG R+++FV T R+ ++ +P +
Sbjct: 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRES--------- 298
Query: 1127 LLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI------AGHKEAI 1180
LLN F G+ +++ T G V+ V Y+LP YV +I +AI
Sbjct: 299 LLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358
Query: 1181 AFYDPVADIGLASSLIKLLEYSNKHVPTHP 1210
+F A A SL + Y + +P P
Sbjct: 359 SF----ACERYAMSLPDIEAYIEQKIPVEP 384
>gnl|CDD|177446 PHA02663, PHA02663, hypothetical protein; Provisional.
Length = 172
Score = 30.7 bits (69), Expect = 4.2
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 947 ESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSN 1006
+D++ +V+ Y+ +Y V + L+PRE+ LE + ++ R+ LL +SN
Sbjct: 4 RNDIDASAVVAAYLAGEYAAAV------EEQLTPREREALEALRISGDEVRSPLLQELSN 57
Query: 1007 A 1007
A
Sbjct: 58 A 58
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which ubiquitinates
RIG-I (retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of viral
infection. Normally, RIG-I is activated by TRIM25 in
response to viral infection, leading to activation of the
RIG-I signaling pathway, thus resulting in type I
interferon production to limit viral replication.
However, RNF135, consisting of an N-terminal RING finger
domain, C-terminal SPRY and PRY motifs and showing
sequence similarity to TRIM25, acts as an alternative
factor that promotes RIG-I activation independent of
TRIM25.
Length = 168
Score = 30.5 bits (69), Expect = 4.7
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 1446 GITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI--RDYNHRTTGDMWLYRAYSGN----VY 1499
G + GC+ W+ + + + G +GV W I RD RT D W +SG +
Sbjct: 47 GFSSGCHYWEV----DTRNSSGWAVGVASWEIGRRDKLGRT-MDSWCIE-WSGPKQLSAW 100
Query: 1500 HSGEQTTMLPSFTQGDYITVV---LDMDAQTLSFGKNGEEPHLAFQ-DLDTSAPLYPIVL 1555
H ++T F D +VV LD++ TLSF + L + ++ S+PLYP
Sbjct: 101 HKNKKT-----FLGKDKPSVVGVFLDLENGTLSFYSVDNQERLLHEFEVSFSSPLYPAFW 155
Query: 1556 FYSTNANG 1563
Y
Sbjct: 156 LYGLEPGN 163
>gnl|CDD|150276 pfam09547, Spore_IV_A, Stage IV sporulation protein A (spore_IV_A).
SpoIVA is designated stage IV sporulation protein A. It
acts in the mother cell compartment and plays a role in
spore coat morphogenesis. A comparative genome analysis
of all sequenced genomes of Firmicutes shows that the
proteins are strictly conserved among the sub-set of
endospore-forming species.
Length = 492
Score = 31.4 bits (72), Expect = 4.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 896 PEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRDMRHVSNNI 940
P+ EE ET HWLK S + A E A+ + K +RD+ +
Sbjct: 246 PKWVEELETEHWLKQSFIEAIKE---ALKGVRK-IRDIDRAVEAL 286
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 31.9 bits (72), Expect = 5.1
Identities = 49/187 (26%), Positives = 68/187 (36%), Gaps = 19/187 (10%)
Query: 1591 PILMVESYISLLRQLHKIDRWKAHVNQCLLDRLSVIKELTAAAEEDNASAFVPQADKGRL 1650
P+L E L+ + + Q + RL +E E A AF G
Sbjct: 486 PMLDAEERGQLVEGWNATAA--EYPLQRGVHRL--FEEQVERTPEAPALAF------GEE 535
Query: 1651 VLEEAQMELLCREVWPALVVMGGGDDGLRMGGKCVEKPSGRVGTLLGTLKEGIAKVKDLN 1710
L+ A++ + AL+ G G D + G +E+ V LL LK G A V
Sbjct: 536 TLDYAELNRRANRLAHALIERGVGPD--VLVGVAMERSIEMVVALLAILKAGGAYVP--- 590
Query: 1711 FDEIDLPRDYSQQLLRAS-VQGHRLVSQQQLWDFNPLDASSSQTRRSRLVAMFSGNQESA 1769
D + P + +L S VQ L+SQ L PL A R A G E
Sbjct: 591 LDP-EYPAERLAYMLEDSGVQ--LLLSQSHLGRKLPLAAGVQVLDLDRPAAWLEGYSEEN 647
Query: 1770 RLTRSHP 1776
T +P
Sbjct: 648 PGTELNP 654
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20 tandemly
arranged genes in the Treponema denticola genome. Two
other neighboring genes share the lipoprotein signal
peptide region but do not show more extensive homology.
The function of this locus is unknown.
Length = 394
Score = 31.4 bits (71), Expect = 5.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 1372 AHHNALKKEE-ELDKQ----IEHLYCPPPSGTSNASRQGYVDIDSVSFDKEKCVC 1421
A+ +LK+ + ELDK I+ P G N ++Q ++ V D E C
Sbjct: 69 AYEESLKQLQFELDKYDLVLIQAYKTPTNIGIDNLAQQKNLEFIKVKKDGEFIYC 123
>gnl|CDD|188163 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of phosphoribosylformylglycinamidine
synthase, also called FGAM synthase, an enzyme of purine
de novo biosynthesis. This form is found mostly in
eukaryotes and Proteobacteria. In Bacillus subtilis PurL
(FGAM synthase II) and PurQ (FGAM synthase I), homologous
to different parts of this model, perform the equivalent
function; the unrelated small protein PurS is also
required and may be a third subunit [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 1310
Score = 31.7 bits (72), Expect = 5.4
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 1601 LLRQLHKIDRWKAHVNQCLLDRLSVIKELTAAAEEDNASAFVPQADKGRLVLEEAQMEL 1659
LH DR + + +L EL + E N + + GRL LE+A EL
Sbjct: 127 AAALLH--DR----MTESVLPHEIEAFELFSVPEPLNLTT-IDVLGGGRLALEKANQEL 178
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family. All
proteins in this family for which functions are known are
3'-5' DNA-DNA helicases. These proteins are used for
recombination, recombinational repair, and possibly
maintenance of chromosome stability. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 470
Score = 30.9 bits (70), Expect = 6.7
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1139 VIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQI--AGH----KEAIAFYDPVADIGLA 1192
V+ T++ +G + +V VI Y+LP S+ Y + AG E FY P ADI
Sbjct: 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAP-ADINRL 338
Query: 1193 SSLI 1196
L+
Sbjct: 339 RRLL 342
>gnl|CDD|217005 pfam02378, PTS_EIIC, Phosphotransferase system, EIIC. The
bacterial phosphoenolpyruvate: sugar phosphotransferase
system (PTS) is a multi-protein system involved in the
regulation of a variety of metabolic and transcriptional
processes. The sugar-specific permease of the PTS
consists of three domains (IIA, IIB and IIC). The IIC
domain catalyzes the transfer of a phosphoryl group from
IIB to the sugar substrate.
Length = 313
Score = 30.8 bits (70), Expect = 7.8
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 784 IVFPHVIDILERSIAWVNQGKDIEVLNELLYNSLAGKILFSIVHSLLI--NIHRSMYPTL 841
+V V+ ++ +I L +L SL G ++ + LL +H +
Sbjct: 164 LVIGPVLGLIWPAIQGGLNA---LGLLLILAGSLLGSLIIGFLERLLWPFGLHGAFIAIA 220
Query: 842 RYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALLI 884
+ + Q + + LALL
Sbjct: 221 WFLPIGGSNAIANQQAYGAGAHILTGGFDVMFGGPGATLALLA 263
>gnl|CDD|204057 pfam08767, CRM1_C, CRM1 C terminal. CRM1 (also known as Exportin1)
mediates the nuclear export of proteins bearing a
leucine-rich nuclear export signal (NES). CRM1 forms a
complex with the NES containing protein and the small
GTPase Ran. This region forms an alpha helical structure
formed by six helical hairpin motifs that are
structurally similar to the HEAT repeat, but share little
sequence similarity to the HEAT repeat.
Length = 279
Score = 30.3 bits (69), Expect = 9.4
Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 23/146 (15%)
Query: 1036 IEEESNIEVEDPI---MKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTY 1092
I + + P+ ++ VK + L++ Y+ + +++ N + + +
Sbjct: 24 IAADGENATKTPLVRLLRTVKKEILKLIETYISKAEDLEEVGN--NLVPP----LLDAVL 77
Query: 1093 RDASRIISAVQDS---NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFIGN 1149
D R + ++ ++MT ++ G + L L +F TL D I
Sbjct: 78 GDYQRNVPDAREPEVLSLMTTIINKLGNEITDEVPLILEAVFEC--------TL-DMINK 128
Query: 1150 DFTNVEQ--VIIYNLPLSINHYVFQI 1173
DF + V + L +IN + F
Sbjct: 129 DFEEYPEHRVEFFKLLRAINLHCFDA 154
>gnl|CDD|240497 cd13739, SPRY_PRY_TRIM1, PRY/SPRY domain of tripartite motif-binding
protein 1 (TRIM1) or MID2. This domain, consisting of
the distinct N-terminal PRY subdomain followed by the
SPRY subdomain, is found at the C-terminus of TRIM1 (also
known as MID2 or midline 2). MID2 and its close homolog,
TRIM18 (also known as MID1), both contain a B30.2-like
domain at their C-terminus and a single fibronectin type
III (FN3) motif between it and their N-terminal RBCC
domain. MID2 and MID1 coiled-coil motifs mediate both
homo- and heterodimerization, a prerequisite for
association of the rapamycin-sensitive PP2A regulatory
subunit Alpha 4 with microtubules. Mutations in MID1 have
shown to cause Opitz syndrome, a disorder causing
congenital anomalies such as cleft lip and palate as well
as heart defects.
Length = 168
Score = 29.6 bits (66), Expect = 9.7
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 1436 GTRGYGVA-NIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNHRTTGDMWLYRAY 1494
GT YG A NI I GC+ W+ ++ + G I P ++ + R
Sbjct: 39 GTGCYGAAGNIFIDSGCHYWEVVVGSSTWYAIG--IAYKSAPKNEWIGKNASSWVFSRCN 96
Query: 1495 SGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYP 1552
+ V + ++ Q + V+LD D LSF HL D+ P+ P
Sbjct: 97 NNFVVRHNNKEMLVDVPPQLKRLGVLLDYDNNMLSFYDPANSLHLHTFDVSFILPVCP 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 92,269,323
Number of extensions: 9097761
Number of successful extensions: 7072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7022
Number of HSP's successfully gapped: 62
Length of query: 1858
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1747
Effective length of database: 6,014,308
Effective search space: 10506996076
Effective search space used: 10506996076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (29.1 bits)