RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15269
(1858 letters)
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 331 bits (851), Expect = e-102
Identities = 128/370 (34%), Positives = 179/370 (48%), Gaps = 22/370 (5%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSN--IRHIEAGQFCTFLLDSTGGLLVYGKG 246
+Y WG N Q+ K P + + G+ F + + G L G G
Sbjct: 21 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80
Query: 247 W---LGLANTTIQPLPKRVP--LEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKL 301
LG+ T P + I ++V+ H L ++SEGEVYSWG E GKL
Sbjct: 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVN-SGGKHCLALSSEGEVYSWGEAEDGKL 139
Query: 302 GHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS 361
GHGN RP++I L G V V+AG +HSA VT G LYTWG+G +GRLGH D +
Sbjct: 140 GHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED 198
Query: 362 RHTPTLVTELSD--VGAVSC--GESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPK 417
+ P LV L V ++C G++ TL L+ D TVWS G G+ GKLG + P
Sbjct: 199 QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDD-TVWSWGDGDYGKLGRGGSDGCKVPM 257
Query: 418 VIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSS 471
I++L V KV G+ FSVALT G V+ WG LG S P V GL
Sbjct: 258 KIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD-HVRRPRQVQGLQG 316
Query: 472 HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQIC 531
+++ ++ G H + ++ EVY WG N GQ G + + +P V L+ V ++
Sbjct: 317 KKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNA-IQRPRLVAALQGKKVNRVA 375
Query: 532 AGSLFSIAYT 541
GS ++A++
Sbjct: 376 CGSAHTLAWS 385
Score = 281 bits (720), Expect = 3e-84
Identities = 94/278 (33%), Positives = 127/278 (45%), Gaps = 16/278 (5%)
Query: 276 CSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSA 335
S L G +Y WG G+LG + P L R Q+ G
Sbjct: 8 SSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLF 66
Query: 336 AVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG----AVSCGESHTLVLSQDG 391
AVT DG LY G G GRLG G +S TPTL+ + V AV+ G H L LS +G
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 392 HTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG- 450
V+S G GKLGH + P+VIE+LR V V AG + S +T G ++ WG
Sbjct: 127 -EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGK 185
Query: 451 -----LGLRSSSISFHTPVLVTGLSSHQIVDVSI--GDSHVLALSQYNEVYAWGSNTMGQ 503
LG S P LV L H++VD++ GD+ L L+ + V++WG G+
Sbjct: 186 GRYGRLGHSDSE-DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGK 244
Query: 504 CGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
G+ P K+ L + V ++ GS FS+A T
Sbjct: 245 LGRGGSDG-CKVPMKIDSLTGLGVVKVECGSQFSVALT 281
Score = 210 bits (536), Expect = 1e-59
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 15/228 (6%)
Query: 324 VTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELS--DVGAVSCGE 381
+ + G +Y WG G+LG + PT L+ + GE
Sbjct: 3 HHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGE 62
Query: 382 SHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKV--CAGTSFSVA 439
++ DG +++ G G G+LG T V+TP ++E+++ ++KV +G +A
Sbjct: 63 QTLFAVTADG-KLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLA 121
Query: 440 LTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEV 493
L+ +G V+ WG LG + S P ++ L ++VDV+ G +H ++ ++
Sbjct: 122 LSSEGEVYSWGEAEDGKLGHGNRSPC-DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDL 180
Query: 494 YAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQI-C-AGSLFSIA 539
Y WG G+ G + + +P V L+ V I C +G ++
Sbjct: 181 YTWGKGRYGRLGHSDSED-QLKPKLVEALQGHRVVDIACGSGDAQTLC 227
Score = 121 bits (306), Expect = 2e-29
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 165 DIDSTSTPKLTYNIGD---TDISVA----HS-------KVYTWGCNLHHQILDEVRGKCS 210
D + PKL + DI+ + V++WG + ++ C
Sbjct: 195 DSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCK 254
Query: 211 RP-RLQSLPS-NIRHIEAGQFCTFLLDSTGGLLVYGKGW---LGLANTTIQPLPKRVPLE 265
P ++ SL + +E G + L +G + +GKG LG + P++V
Sbjct: 255 VPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL 314
Query: 266 AAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVT 325
++++ H + T +GEVY+WG + G+LG G T + +RP+L+ L GK+V
Sbjct: 315 QGKKVIAIA-TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA-LQGKKVN 372
Query: 326 QVSAGHSHSAAVTE 339
+V+ G +H+ A +
Sbjct: 373 RVACGSAHTLAWST 386
Score = 55.7 bits (135), Expect = 7e-08
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 473 QIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICA 532
L +Y WG N GQ G + V P+ L + Q+
Sbjct: 2 HHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK-VKVPTPCEALATLRPVQLIG 60
Query: 533 GSLFSIAYT 541
G A T
Sbjct: 61 GEQTLFAVT 69
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 300 bits (771), Expect = 1e-90
Identities = 90/390 (23%), Positives = 154/390 (39%), Gaps = 47/390 (12%)
Query: 189 KVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW 247
V T G Q+ L E + +P L S+P ++ EAG T L +G + +G
Sbjct: 28 LVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCND 87
Query: 248 ---LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE--HGK 300
LG + + +P +V L+ +V +S ++H +T +G V+ WG +G
Sbjct: 88 EGALGRDTSVEGSEMVPGKVELQEKVVQVS---AGDSHTAALTDDGRVFLWGSFRDNNGV 144
Query: 301 LGHGNTLS-QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGD- 358
+G + P + V +V++G+ H +T DG LYT G G+ G+LG
Sbjct: 145 IGLLEPMKKSMVPVQVQLD---VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE 201
Query: 359 ----------LKSRHTPTLVT-------ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGN 401
L+ P V CG T +S +G V+ G N
Sbjct: 202 LFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG-HVYGFGLSN 260
Query: 402 LGKLGHEDTGKVTTPKVIEALR--KFRVRKVCAGTSFSVALTWDGLVFWWG------LGL 453
+LG T P+ + + + G +V + +G + G LGL
Sbjct: 261 YHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL 320
Query: 454 RSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPV 513
+ P L++ L + + V+ G S A+++ V+AWG T Q G +
Sbjct: 321 GEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED-A 377
Query: 514 DQPSKVVG--LEDVCVRQICAGSLFSIAYT 541
P +++G LE+ V + +G ++
Sbjct: 378 WSPVEMMGKQLENRVVLSVSSGGQHTVLLV 407
Score = 257 bits (658), Expect = 1e-75
Identities = 91/377 (24%), Positives = 149/377 (39%), Gaps = 55/377 (14%)
Query: 164 TDIDSTSTPKLTYNIGD-TDISV--AHS-------KVYTWGCNLHHQIL---DEVRGKCS 210
++ P L D H+ +VY++GCN L V G
Sbjct: 44 ENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGA-LGRDTSVEGSEM 102
Query: 211 RPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW-----LGLANTT-IQPLPKRVPL 264
P L + + AG T L G + ++G +GL +P +V L
Sbjct: 103 VPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL 162
Query: 265 EAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR-----------PK 313
+ +V ++ H++ +T++G++Y+ G GE G+LG L R PK
Sbjct: 163 DVPVVKVA---SGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPK 219
Query: 314 LIM----GGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVT 369
+M G R G + A++ +G +Y +G ++ +LG +S P +T
Sbjct: 220 CVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLT 279
Query: 370 ELSDVG----AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH-EDTGKVTTPKVIEALRK 424
+ S G+ HT+ + +G +S+G G+LG E + + P +I L
Sbjct: 280 SFKNSTKSWVGFSGGQHHTVCMDSEG-KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA 338
Query: 425 FRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTG--LSSHQIVD 476
V V G S A+T DG VF WG LG +PV + G L + ++
Sbjct: 339 --VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDE-DAWSPVEMMGKQLENRVVLS 395
Query: 477 VSIGDSHVLALSQYNEV 493
VS G H + L + E
Sbjct: 396 VSSGGQHTVLLVKDKEQ 412
Score = 202 bits (517), Expect = 6e-57
Identities = 69/254 (27%), Positives = 103/254 (40%), Gaps = 32/254 (12%)
Query: 310 RRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGD-LKSRHTPTLV 368
RR SH + TE GL+ T G+GD G+LG G+ + R P LV
Sbjct: 1 RRSPPA-----DAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALV 55
Query: 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVR 428
+ DV G HT+ LS+ G V+S G + G LG + + + + + + +V
Sbjct: 56 SIPEDVVQAEAGGMHTVCLSKSG-QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVV 114
Query: 429 KVCAGTSFSVALTWDGLVFWWG--------LGLRSSSISFHTPVLVTGLSSHQIVDVSIG 480
+V AG S + ALT DG VF WG +GL PV V +V V+ G
Sbjct: 115 QVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV--PVVKVASG 172
Query: 481 DSHVLALSQYNEVYAWGSNTMGQCG----------QDNFSNPVDQPSKVV-----GLEDV 525
+ H++ L+ ++Y G GQ G + P V+ V
Sbjct: 173 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHV 232
Query: 526 CVRQICAGSLFSIA 539
+ G+ F+ A
Sbjct: 233 RFQDAFCGAYFTFA 246
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 296 bits (760), Expect = 3e-89
Identities = 82/382 (21%), Positives = 138/382 (36%), Gaps = 38/382 (9%)
Query: 189 KVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW 247
V G Q+ L E + R + + I AG +L +G + +G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCND 103
Query: 248 ---LGLANTT--IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGE--HGK 300
LG + + P + L + +S ++H + +G V++WG HG
Sbjct: 104 EGALGRDTSEDGSESKPDLIDLPGKALCIS---AGDSHSACLLEDGRVFAWGSFRDSHGN 160
Query: 301 LGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK 360
+G ++R P +M G +++G H +T G ++T G + G+LG +
Sbjct: 161 MGLTIDGNKRTPIDLMEG---TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSER 217
Query: 361 SR-----------HTPTLVT--ELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH 407
S PT + A+ T + +W+ G N +L H
Sbjct: 218 SISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAH 277
Query: 408 EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFH 461
E GK I+ K +R + G +V LT D G LGL
Sbjct: 278 ETKGKEFALTPIKTELK-DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVE 336
Query: 462 TPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG 521
P +V L+ IV V G+ A++ ++Y+WGS Q G + + +P VV
Sbjct: 337 KPTIVKKLTEK-IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD-ELEPIVVVS 394
Query: 522 --LEDVCVRQICAGSLFSIAYT 541
+ + G +I
Sbjct: 395 KNTQGKHMLLASGGGQHAIFLV 416
Score = 251 bits (644), Expect = 1e-73
Identities = 76/361 (21%), Positives = 134/361 (37%), Gaps = 46/361 (12%)
Query: 167 DSTSTPKLTYNIGDTDI-SVA----HS-------KVYTWGCNLHHQ--ILDEVRGKCSRP 212
D +L+ G D ++ H+ +Y++GCN G S+P
Sbjct: 61 DILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKP 120
Query: 213 RLQSLPSNIRHIEAGQFCTFLLDSTG-----GLLVYGKGWLGLANTTIQPLPKRVPLEAA 267
L LP I AG + L G G G +GL + P +
Sbjct: 121 DLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTV 180
Query: 268 IVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIM----------G 317
S++ H++ +T+ G+V++ G E G+LG + S
Sbjct: 181 CCSIA---SGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLI 237
Query: 318 GLYGKRVTQVSAGHSHSAAVT-EDGLLYTWGEGDHGRLGHGDLKSRHTPTLV-TELSDVG 375
K + A + + + +++ G + +L H T + TEL D+
Sbjct: 238 ITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIR 297
Query: 376 AVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDT-GKVTTPKVIEALRKFRVRKVCAGT 434
++ G+ HT++L+ D +G G+LG D V P +++ L + ++ V G
Sbjct: 298 HIAGGQHHTVILTTDL-KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGE 355
Query: 435 SFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTG--LSSHQIVDVSIGDSHVLA 486
S A+T DG ++ WG LG+ P++V ++ S G H +
Sbjct: 356 VCSYAVTIDGKLYSWGSGVNNQLGVGDGD-DELEPIVVVSKNTQGKHMLLASGGGQHAIF 414
Query: 487 L 487
L
Sbjct: 415 L 415
Score = 251 bits (642), Expect = 2e-73
Identities = 69/319 (21%), Positives = 110/319 (34%), Gaps = 33/319 (10%)
Query: 245 KGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHG 304
L N ++ P +A ++ T G V G G+ G+LG G
Sbjct: 3 PRRKALTNNNNAGEAEQQPPKAKRARIA---FHLELPKRRTVLGNVLVCGNGDVGQLGLG 59
Query: 305 NTLSQR-RPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLK--S 361
+ +R R + G +SAG H+ +T+ G +Y++G D G LG + S
Sbjct: 60 EDILERKRLSPVAGI---PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116
Query: 362 RHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSG--NLGKLGHEDTGKVTTPKVI 419
P L+ +S G+SH+ L +DG V++ GS + G +G G TP +
Sbjct: 117 ESKPDLIDLPGKALCISAGDSHSACLLEDG-RVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGL----------RSSSISFHTP 463
+ +G V LT G VF G LG R P
Sbjct: 176 MEGTV--CCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233
Query: 464 VLVTGLSSHQIVDVSIGDSHVLAL-SQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGL 522
+ + + + SQ ++A G N Q + L
Sbjct: 234 TQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL 293
Query: 523 EDVCVRQICAGSLFSIAYT 541
+D+ I G ++ T
Sbjct: 294 KDIR--HIAGGQHHTVILT 310
Score = 202 bits (516), Expect = 1e-56
Identities = 63/323 (19%), Positives = 113/323 (34%), Gaps = 42/323 (13%)
Query: 154 LGDRKSSNSNTDIDSTSTPKLTYNIGDTDISVA----HS-------KVYTWGCNLHH--Q 200
LG S + S S P L G + ++ HS +V+ WG
Sbjct: 107 LGRDTSEDG-----SESKPDLIDLPGKA-LCISAGDSHSACLLEDGRVFAWGSFRDSHGN 160
Query: 201 ILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGW---LGLANTT--- 254
+ + G P + I +G +L + G + G LG +
Sbjct: 161 MGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220
Query: 255 --------IQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSE-GEVYSWGVGEHGKLGHGN 305
P ++ + A ++ + S+ +++ G+ +L H
Sbjct: 221 GEGRRGKRDLLRPTQLIITRAKPFEAIW-ATNYCTFMRESQTQVIWATGLNNFKQLAHET 279
Query: 306 TLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRH-T 364
+ I K + ++ G H+ +T D G ++GRLG GD+K
Sbjct: 280 KGKEFALTPIKTE--LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337
Query: 365 PTLVTEL-SDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIE--A 421
PT+V +L + +V CGE + ++ DG ++S GSG +LG D P V+
Sbjct: 338 PTIVKKLTEKIVSVGCGEVCSYAVTIDG-KLYSWGSGVNNQLGVGDGDDELEPIVVVSKN 396
Query: 422 LRKFRVRKVCAGTSFSVALTWDG 444
+ + G ++ L
Sbjct: 397 TQGKHMLLASGGGQHAIFLVKAD 419
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 283 bits (727), Expect = 5e-85
Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 34/362 (9%)
Query: 165 DIDSTSTPKLTYNIGDTDI-SVA----HS--------KVYTWGCNLHHQILDEVRGKCSR 211
D + +P + I SV H+ +VY+WG ++
Sbjct: 52 DAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFT 111
Query: 212 PRLQSLPS--NIRHIEAGQFCTFLLDSTGGLLVYGKGW---LGLANTTIQPLPKRVPLEA 266
P I+ I G + G + +G+ LGL +T +P+++
Sbjct: 112 PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171
Query: 267 AIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQ 326
I V+ H VT +G++Y WG G +G LG G+ + P+ + G++++
Sbjct: 172 GIRIKMVA-AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSM 229
Query: 327 VSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVG--AVSCGESHT 384
V+ G H+ +V+ G LYT+G +G+LGHGDL+ P + LS+ +S G HT
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 289
Query: 385 LVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDG 444
+ L+ DG ++ G G++G + +P + +V +V G ++A+T
Sbjct: 290 MALTSDG-KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERN 348
Query: 445 LVFWWG------LGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGS 498
VF WG LG+ S + P ++ LS VD + G + + +W S
Sbjct: 349 NVFAWGRGTNGQLGIGESV-DRNFPKIIEALS----VDGASGQHIESSNIDPSSGKSWVS 403
Query: 499 NT 500
Sbjct: 404 PA 405
Score = 237 bits (608), Expect = 5e-69
Identities = 70/244 (28%), Positives = 120/244 (49%), Gaps = 13/244 (5%)
Query: 304 GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRH 363
G ++ ++V +SAG SHS A+ ++ +WG G+ G+LGHGD + R
Sbjct: 1 GMAEDMAADEVT---APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRP 57
Query: 364 TPTLVTELS--DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEA 421
+PT ++ L + +V+CG HT+ SQ G V+S G G+ G+LGH ++ + TP I+A
Sbjct: 58 SPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKA 117
Query: 422 LRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQIV 475
L R++++ G S +A+T +G V WG LGL + P + +I
Sbjct: 118 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE-DSLVPQKIQAFEGIRIK 176
Query: 476 DVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSL 535
V+ G H A+++ ++Y WG G G + ++ P +V + + G
Sbjct: 177 MVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTD-RLVPERVTSTGGEKMSMVACGWR 235
Query: 536 FSIA 539
+I+
Sbjct: 236 HTIS 239
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 284 bits (728), Expect = 3e-84
Identities = 87/428 (20%), Positives = 156/428 (36%), Gaps = 74/428 (17%)
Query: 189 KVYTWGCNLHHQI---LDEVRGKCSRPR----LQSLPSNIRHIEAGQFCTFLLDSTGGLL 241
++ WG ++ + RPR L + I G T LD +
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 242 VYG---KGWLGLANTT-----------------------IQPLPKRVPLEAAIVSLSVSK 275
+G G LG + ++ P ++P E+ K
Sbjct: 90 SWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHK 149
Query: 276 -----CSEAHVLTVTSEGEVYSWGVGE--HGKLGHGN--TLSQRRPKLIMGGLYGKRVTQ 326
++ + S GEVY+WG G LG Q+ P + + Q
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQ 208
Query: 327 VSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTE---LSDVGAVSCGESH 383
++ G H + E+G+++ WG G +LG ++ TL L V ++ GE+H
Sbjct: 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENH 268
Query: 384 TLVLSQDGHTVWSMGSGNLGKLGH----EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVA 439
L++D + S G G+ G ED VT PK + +R + AG S+
Sbjct: 269 CFALTKDN-KLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLI 327
Query: 440 LTWDGLVFWWG------LGLRSSSISFH-------------TPVLVTGLSSHQIVDVSIG 480
L+ DG ++ G +G+ ++ + P + + + V+ G
Sbjct: 328 LSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAG 385
Query: 481 DSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSI 538
H +A++Q Y+WG G F + + P+++ +D + + G FS+
Sbjct: 386 SHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSV 445
Query: 539 AYTVPPSN 546
+ V S+
Sbjct: 446 SGGVKLSD 453
Score = 220 bits (562), Expect = 3e-62
Identities = 63/371 (16%), Positives = 123/371 (33%), Gaps = 99/371 (26%)
Query: 219 SNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVSKCSE 278
S+I + +
Sbjct: 10 SHIINAQED--------------------------------------------------Y 19
Query: 279 AHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ---RRPKLI-MGGLYGKRVTQVSAGHSHS 334
H+ +++ WG G +LG G +RP+L ++ + G H+
Sbjct: 20 KHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHT 79
Query: 335 AAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSD--------------------- 373
A+ E+ +++WG D G LG ++ +
Sbjct: 80 LALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRE 139
Query: 374 ----------VGAVSCGESHTLVLSQDGHTVWSMGSG--NLGKLGH--EDTGKVTTPKVI 419
V ++ ++ + L +G V++ G+ N G LG + TP +
Sbjct: 140 SFPPLAEGHKVVQLAATDNMSCALFSNG-EVYAWGTFRCNEGILGFYQDKIKIQKTPWKV 198
Query: 420 EALRKFRVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFHTPVLVTGLSSHQ 473
K+ + ++ G + L +G+VF WG LG + +
Sbjct: 199 PTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRH 258
Query: 474 IVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSN---PVDQPSKVVGLEDVCVRQI 530
+ ++ G++H AL++ N++ +WG N GQCG V +P ++ ++V +R I
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318
Query: 531 CAGSLFSIAYT 541
AG S+ +
Sbjct: 319 AAGEHHSLILS 329
Score = 201 bits (513), Expect = 8e-56
Identities = 57/266 (21%), Positives = 93/266 (34%), Gaps = 48/266 (18%)
Query: 320 YGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKS-------RHTPTLVTELS 372
+ + + H + ++ WG G LG G L R P L + +
Sbjct: 8 HMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEA 67
Query: 373 DVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEA----------- 421
+ + + G HTL L ++ VWS G ++G LG + + K ++A
Sbjct: 68 KIISFAVGGMHTLALDEES-NVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDL 126
Query: 422 ------------------LRKFRVRKVCAGTSFSVALTWDGLVFWWG--------LGLRS 455
+V ++ A + S AL +G V+ WG LG
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQ 186
Query: 456 SSISFH-TPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVD 514
I TP V S + IV ++ G H+L L + V+AWG+ Q G
Sbjct: 187 DKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG-RKVMERFR 245
Query: 515 QPSKVVGLEDV-CVRQICAGSLFSIA 539
+ + V+ I +G A
Sbjct: 246 LKTLDPRPFGLRHVKYIASGENHCFA 271
Score = 127 bits (322), Expect = 6e-31
Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 43/220 (19%)
Query: 364 TPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH---EDTGKVTTPKVIE 420
+S + H + Q ++ G+G++ +LG +V P++
Sbjct: 2 GHHHHHHMSHIINAQEDYKHMYLSVQPL-DIFCWGTGSMCELGLGPLAKNKEVKRPRLNP 60
Query: 421 ALRKF--RVRKVCAGTSFSVALTWDGLVFWWG------LGLRSSSISFH----------- 461
L + ++ G ++AL + V+ WG LG +S+
Sbjct: 61 FLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSD 120
Query: 462 -----------TPVLVTGLSS------HQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQC 504
TP + S H++V ++ D+ AL EVYAWG+ +
Sbjct: 121 DEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG 180
Query: 505 G---QDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
+ P KV + Q+ G +
Sbjct: 181 ILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD 220
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 157 bits (399), Expect = 1e-42
Identities = 60/290 (20%), Positives = 98/290 (33%), Gaps = 64/290 (22%)
Query: 252 NTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR 311
N ++ + +++ H L + G+V WG +G+L
Sbjct: 10 NNDWGEATVPAEAQSGVDAIA---GGYFHGLALKG-GKVLGWGANLNGQLTMPAATQ--- 62
Query: 312 PKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTEL 371
V ++AG+ HS A+ DG + WG + G+
Sbjct: 63 ----------SGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP----------AEAR 101
Query: 372 SDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVC 431
S V A++ G + L +DG V + G + G+ + V +
Sbjct: 102 SGVDAIAAGAWASYAL-KDG-KVIAWGDDSDGQTTVPAEAQS------------GVTALD 147
Query: 432 AGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYN 491
G ++A+ +G V WG + T V S + DV+ G H LAL
Sbjct: 148 GGVYTALAVK-NGGVIAWG-----DNYFGQTTVPAEAQSG--VDDVAGGIFHSLALKD-G 198
Query: 492 EVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
+V AWG N Q P + S V I +G +S+A
Sbjct: 199 KVIAWGDNRYKQTT-----VPTEALSGVS--------AIASGEWYSLALK 235
Score = 153 bits (390), Expect = 2e-41
Identities = 70/319 (21%), Positives = 106/319 (33%), Gaps = 74/319 (23%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYG---KG 246
V WG N G+ + P S + I G F L G +L +G G
Sbjct: 4 VVAWGGNNDW-------GEATVP--AEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNG 53
Query: 247 WLGLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNT 306
L + T ++ + +++ H L + GEV +WG E G+
Sbjct: 54 QLTMPAAT----------QSGVDAIA---AGNYHSLALKD-GEVIAWGGNEDGQTTVPAE 99
Query: 307 LSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366
V ++AG S A+ DG + WG+ G+
Sbjct: 100 A-------------RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------- 136
Query: 367 LVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFR 426
S V A+ G L + +G V + G G+ + A +
Sbjct: 137 -AEAQSGVTALDGGVYTALAVK-NG-GVIAWGDNYFGQTT------------VPAEAQSG 181
Query: 427 VRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLA 486
V V G S+AL DG V WG T V LS + ++ G+ + LA
Sbjct: 182 VDDVAGGIFHSLALK-DGKVIAWGDNRYKQ-----TTVPTEALSG--VSAIASGEWYSLA 233
Query: 487 LSQYNEVYAWGSNTMGQCG 505
L +V AWGS+
Sbjct: 234 LKN-GKVIAWGSSRTAPSS 251
Score = 141 bits (358), Expect = 3e-37
Identities = 58/252 (23%), Positives = 80/252 (31%), Gaps = 59/252 (23%)
Query: 288 GEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWG 347
V +WG G P G V ++ G+ H A+ G + WG
Sbjct: 2 TSVVAWGGNNDW--GEATV-----PAEAQSG-----VDAIAGGYFHGLALK-GGKVLGWG 48
Query: 348 EGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGH 407
+G+L S V A++ G H+L L DG V + G G+
Sbjct: 49 ANLNGQLTMP----------AATQSGVDAIAAGNYHSLALK-DG-EVIAWGGNEDGQTT- 95
Query: 408 EDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVT 467
+ A + V + AG S AL DG V WG T V
Sbjct: 96 -----------VPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQ-----TTVPAE 138
Query: 468 GLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPSKVVGLEDVCV 527
S + + G LA+ V AWG N GQ P + S V
Sbjct: 139 AQS--GVTALDGGVYTALAVKN-GGVIAWGDNYFGQTT-----VPAEAQSGVD------- 183
Query: 528 RQICAGSLFSIA 539
+ G S+A
Sbjct: 184 -DVAGGIFHSLA 194
Score = 124 bits (314), Expect = 2e-31
Identities = 54/300 (18%), Positives = 96/300 (32%), Gaps = 72/300 (24%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWL 248
KV WG NL+ G+ + P + S + I AG + + L G ++ +G
Sbjct: 43 KVLGWGANLN--------GQLTMP--AATQSGVDAIAAGNYHSLALKD-GEVIAWGGNED 91
Query: 249 GLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
G Q + + +++ + G+V +WG G+
Sbjct: 92 G------Q-TTVPAEARSGVDAIA---AGAWASYALKD-GKVIAWGDDSDGQTTVPAEA- 139
Query: 309 QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368
VT + G ++A ++G + WG+ G+
Sbjct: 140 ------------QSGVTALDGG-VYTALAVKNGGVIAWGDNYFGQT----------TVPA 176
Query: 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVR 428
S V V+ G H+L L DG V + G + V
Sbjct: 177 EAQSGVDDVAGGIFHSLALK-DG-KVIAWGDNRYKQTTVPTEALSG------------VS 222
Query: 429 KVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALS 488
+ +G +S+AL +G V WG + + + S + + G + AL
Sbjct: 223 AIASGEWYSLALK-NGKVIAWGSSRTAP----------SSVQSG-VSSIEAGPNAAYALK 270
Score = 100 bits (250), Expect = 5e-23
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 50/203 (24%)
Query: 189 KVYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWL 248
KV WG + G+ + P S + ++ G + T L GG++ +G +
Sbjct: 121 KVIAWGDDSD--------GQTTVP--AEAQSGVTALDGGVY-TALAVKNGGVIAWGDNYF 169
Query: 249 GLANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLS 308
G ++ + ++ H L + G+V +WG + +
Sbjct: 170 G-------QTTVPAEAQSGVDDVA---GGIFHSLALKD-GKVIAWGDNRYKQTTVPTEA- 217
Query: 309 QRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368
V+ +++G +S A+ +G + WG
Sbjct: 218 ------------LSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------- 253
Query: 369 TELSDVGAVSCGESHTLVLSQDG 391
S V ++ G + L
Sbjct: 254 ---SGVSSIEAGPNAAYALKGGS 273
Score = 64.2 bits (157), Expect = 7e-11
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 44/162 (27%)
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLG 249
V WG N Q S + + G F + L G ++ +G
Sbjct: 161 VIAWGDNYFGQTTVPAEA----------QSGVDDVAGGIFHSLALKD-GKVIAWGDNRYK 209
Query: 250 LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ 309
+ + +++ E + L + + G+V +WG +
Sbjct: 210 -------QTTVPTEALSGVSAIA---SGEWYSLALKN-GKVIAWGSSRTAPSSVQSG--- 255
Query: 310 RRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDH 351
V+ + AG + + A+ G G H
Sbjct: 256 --------------VSSIEAGPNAAYALKGGS-----GSGHH 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 107 bits (267), Expect = 3e-23
Identities = 119/677 (17%), Positives = 215/677 (31%), Gaps = 207/677 (30%)
Query: 636 VDMETSPEIETLLTDCLAIGASLLLPPVVEQL------DLLKTLLSQ---DHPLS----- 681
+D ET E + D L++ V+ D+ K++LS+ DH +
Sbjct: 7 MDFETG-EHQYQYKDILSV----FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 682 NGQRMLLGVITSSLHKNEELAHIFYFDQNQDTNILMLEDLLKISCR------KSYAYTLT 735
+G L + L K EE+ F ++ N L +K R + Y
Sbjct: 62 SGTLRLFWTL---LSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 736 HFQSNACKVSP----QETPVSQVVTLLQSLIITQYVVKH-------SEICEEVYQHYLDI 784
++ + + P ++ L L + V+ + + +V Y
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--- 174
Query: 785 VFPHVIDILERSIAWVNQGKD------IEVLNELLYN-SLAGKILFSIVHSLLINIHRSM 837
V ++ I W+N +E+L +LLY ++ + IH S+
Sbjct: 175 ---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SI 230
Query: 838 YPTLRYFLAILPLLDSL-------------------------------NQLLPMQGNYTE 866
LR L P + L + L +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 867 TNSFLWLIDMERALALLIGKTLG---DMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAI 923
+ + + +LL+ K L L P E T + + S+++
Sbjct: 291 LDHHSMTLTPDEVKSLLL-KYLDCRPQDL--PREVL----TTNPRRLSIIAE-------- 335
Query: 924 IDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPRE- 982
+RD +N + D + ++ S L L P E
Sbjct: 336 -----SIRDGLATWDNWK---HVNCD-------------KLTTIIESSL---NVLEPAEY 371
Query: 983 KTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNI 1042
+ + ++ SV F ++ + S + W D+ +
Sbjct: 372 RKMFDR-LSV---FP-------------PSAHIPTILLSL-------I--WFDVIKS--- 402
Query: 1043 EVEDPIMKLVKPSSVHLVKQYLIRTPKSQKI------VNLLSFLEGKRSL--IFVKTYRD 1094
+V + KL K S LV+ + PK I + L LE + +L V Y
Sbjct: 403 DVMVVVNKLHKYS---LVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN- 454
Query: 1095 ASRIISAVQDSNMMTIPMSNNGTSWSHV-------ECLELLNLFNTGKSSLVIMTLSDFI 1147
I DS+ + P + +SH+ E E + LF M DF
Sbjct: 455 ----IPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFR--------MVFLDF- 500
Query: 1148 GNDFTNVEQVIIY-----NLPLSINHYVFQIAGHKEAIAFYDPVADIGLASSLIKLLEYS 1202
F +EQ I + N SI + + Q+ +K I DP + L ++++ L
Sbjct: 501 --RF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAILDFLPKI 555
Query: 1203 NKHVPTHPHANGNTLLR 1219
+++ + + LLR
Sbjct: 556 EENLICSKYTD---LLR 569
Score = 94.5 bits (234), Expect = 2e-19
Identities = 95/550 (17%), Positives = 175/550 (31%), Gaps = 157/550 (28%)
Query: 549 LSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIPFCSK--VTHAQFILLL---LRL 603
L S T R ++EQ + F +K V+ Q L L L
Sbjct: 94 LMSPIKTEQRQPSMMT----RMYIEQRDRLYNDNQ--VF-AKYNVSRLQPYLKLRQALLE 146
Query: 604 LSSHLYLALIGARSS--SVLGNETAALRHVLFKL------VDM--ETSPE--IETLLTDC 651
L + + G S + + + V K+ +++ SPE +E L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 652 LAIGASLLLPPVVEQLDLLKTLLSQDHPLSNGQRMLLGVITSSLHKN--------EELAH 703
I P + D + + H + R LL S ++N +
Sbjct: 207 YQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNAKA 258
Query: 704 IFYFDQN-------QDTNILMLEDLLKISCRK-----SYAYTLTHFQS------------ 739
F+ + + + D L + ++ TLT +
Sbjct: 259 WNAFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 740 -----NACKVSPQETPVSQVVTLLQSLIIT----QYVV--KHSEICE---------EVYQ 779
+P+ +S + ++ + T ++V K + I E E +
Sbjct: 316 QDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 780 HYLDI-VFPHVIDILER--SIAWVNQGKD--IEVLNELLYNSLAGK----ILFSIVHSLL 830
+ + VFP I S+ W + K + V+N+L SL K SI S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIY 432
Query: 831 I----------NIHRSM---YPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLW----- 872
+ +HRS+ Y + F DS + + P Y F
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTF-------DSDDLIPPYLDQY-----FYSHIGHH 480
Query: 873 LIDMERA-LALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVR 931
L ++E L D +L+ + A I ++
Sbjct: 481 LKNIEHPERMTLFRMVFLDF--------------RFLEQKIRHDST-AWNASGSILNTLQ 525
Query: 932 DMR----HVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYS-YL-IQQTALSPREKTV 985
++ ++ +N P YE VN +L ++P+ +NL+ S Y + + AL ++ +
Sbjct: 526 QLKFYKPYICDN---DPKYERLVNA---ILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 986 LEQIFSVVNK 995
E+ V +
Sbjct: 580 FEEAHKQVQR 589
Score = 66.8 bits (162), Expect = 6e-11
Identities = 108/765 (14%), Positives = 205/765 (26%), Gaps = 277/765 (36%)
Query: 925 DI-----DKFVRDM--RHVSN------------NILMSPNYESDVNKYSVLLKYIPQQYK 965
DI D FV + + V + +I+MS + V+ L + + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLRLFWTLLSKQE 76
Query: 966 NLVYSYLIQQTALSPREKTVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHN 1025
+V ++ + VL + KF + PS + Q +
Sbjct: 77 EMVQKFV----------EEVLRINY----KFLMSPIKTEQRQPSMM-----TRMYIEQRD 117
Query: 1026 STDSLFSWGDIEEES--NIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGK 1083
+ D + + N+ P +KL +Q L+ ++ ++ ++G
Sbjct: 118 RL-----YNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAKNVL-----IDG- 157
Query: 1084 RSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTL 1143
+ G+ GK+ + +
Sbjct: 158 ------------------------VL------GS----------------GKTWVALDVC 171
Query: 1144 SDF--------------IGNDFTNVEQVIIY-NLPLSINHYVFQIAGHKEAIAFYDPVAD 1188
+ + N + + + L I+ + H I +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRI 227
Query: 1189 IGLASSLIKLLEYSNKHVPTHPHANGNTLLREVSSNMIHILAIACANHIEDLNESVRSKL 1248
+ + L +LL+ + P+ N +L V + A N S + L
Sbjct: 228 HSIQAELRRLLK-------SKPYENCLLVLLNVQN----------AKAWNAFNLSCKILL 270
Query: 1249 TSCLHVYLETLLPPSDTQGNLEHDVHNHTEERNLAYYLSFIYSLTSVSTVCQLLATQPWI 1308
T+ + L + T +L+H T + LL +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----------------SLLLK--Y- 310
Query: 1309 QSLLYLLSISPSGL----CKLNLLRARLLTLNLLTAILPHAQQGELGIITELLTQLSHNM 1364
L P L N R L II E +
Sbjct: 311 ------LDCRPQDLPREVLTTNPRR--------------------LSIIAESIRD-GLAT 343
Query: 1365 WKVPRTVAHHNALKKEEELDKQIEHLYCPPPSGTSNASRQGY---------VDI------ 1409
W H N K ++ + L R+ + I
Sbjct: 344 WD---NWKHVNCDKLTTIIESSLNVL-------EPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 1410 ----DSVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQ-WKFLIVNE--- 1461
D + D V + SL+ I I Y K + NE
Sbjct: 394 LIWFDVIKSDVMVVVN---KLHKYSLVEKQPKEST----ISI-PSIYLELKVKLENEYAL 445
Query: 1462 HKGNEGTCIGVTRWPIRDYNHRTTG----DMWLYRAYSGNVYH--SGEQTTMLPSFTQGD 1515
H+ + + P + ++ D + Y ++ G +H + E + F
Sbjct: 446 HR----SIVDHYNIP-KTFDSDDLIPPYLDQYFY-SHIG--HHLKNIEHPERMTLFRM-- 495
Query: 1516 YITVVLDMD-------AQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVK- 1567
V LD + ++ +G + Q L Y + + V
Sbjct: 496 ---VFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLK----FYKPYICDNDPKYERLVNA 547
Query: 1568 ITD-MTVCETPRDLLCGEPYCAPVPI-LMVES---YISLLRQLHK 1607
I D + E +L+C Y + I LM E + +Q+ +
Sbjct: 548 ILDFLPKIEE--NLICS-KYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 65.3 bits (158), Expect = 2e-10
Identities = 102/706 (14%), Positives = 196/706 (27%), Gaps = 235/706 (33%)
Query: 75 VSTFLRQTVTSTSPKADKTVQSS---LRSRVPLTKSLP-PYNAALNLLEEVLRPATHYQV 130
V + ++ + D + S + L +EEVLR +Y+
Sbjct: 38 VQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYK- 92
Query: 131 DLIRSACLVYLILVTLADDNIKPLGDRKSSNSNTDIDSTSTPKLT-YNIGDTDISVAHSK 189
++ + + +P + D YN+
Sbjct: 93 ----------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----------- 131
Query: 190 VYTWGCNLHHQILDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLG 249
RLQ +R L +L+ G G
Sbjct: 132 ----------------------SRLQPY-LKLRQ------ALLELRPAKNVLIDGVLGSG 162
Query: 250 LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQ 309
K +++ C V + +++ W L N
Sbjct: 163 ----------KTW--------VALDVCLSYKVQCK-MDFKIF-W-------LNLKN---C 192
Query: 310 RRPKLIMG---GLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPT 366
P+ ++ L + ++ HS+ + L + + RL LKS+
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRL----LKSKPYEN 245
Query: 367 --LVTELSDVG--------AVSCGESHTLVLSQDGHTVWSMGSGNLGK--LGHEDTGKVT 414
LV L +V +SC L+ ++ + + L H +T
Sbjct: 246 CLLV--LLNVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMT-LT 299
Query: 415 TPKVIEALRKF---RV----RKVCAGTSFSVAL----------TWDGLVFWWGLGLRSSS 457
+V L K+ R R+V +++ TWD W +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NW----KHVNC 352
Query: 458 ISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQDNFSNPVDQPS 517
T I++ S+ +VL ++Y +++ + F P+
Sbjct: 353 DKLTT-----------IIESSL---NVLEPAEYRKMFD-------RLSV--FPPSAHIPT 389
Query: 518 KVVGL-----EDVCVRQI----CAGSL-----FSIAYTVPPSNSALSSAFTPLCVDVRPH 563
++ L V + SL ++P + ++++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----------SIYLELKVK 438
Query: 564 T---FTLIREFLEQYSA--CFETGDYIP------FCSKVTHAQFILLLLRLLSSHLYLAL 612
+ L R ++ Y+ F++ D IP F S + H HL
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-------------HLKNIE 485
Query: 613 IGARSSSVLGNETAALRHVLFKLVDMETSPEIETLLTDCLAIGASLLLPPVVEQLDLLKT 672
R V +E + + D A AS + ++QL K
Sbjct: 486 --------HPERMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 673 LLSQDHPLSNGQRMLLGVITSSLHKNEELAHIFYFDQNQDTNILML 718
+ + P L+ I L K EE ++ T++L +
Sbjct: 533 YICDNDPKYE---RLVNAILDFLPKIEENLIC-----SKYTDLLRI 570
Score = 46.8 bits (110), Expect = 9e-05
Identities = 86/682 (12%), Positives = 169/682 (24%), Gaps = 226/682 (33%)
Query: 1235 NHIEDLNESVRSKLTSCLHVYLETLLPPSDTQGNLEHDVHNHTEERNLAYYLSFIYSLTS 1294
++D+ +S+ SK H+ + + + L +
Sbjct: 36 KDVQDMPKSILSK-EEIDHIIMS---KDAVSG----------------TLRLFWTLLSKQ 75
Query: 1295 VSTVCQLLATQ-----PWIQSLLYLLSISPSGLCKLNLLRARLLTLNLLTAILPHAQQGE 1349
V + + ++ S + PS
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---------------------------- 107
Query: 1350 LGIITELLTQLSHNMWKVPRTVAHHNALKKEEELDKQIEHLYCPPPSGTSNASRQGYVDI 1409
+T + + ++ + A +N + + + K + L V
Sbjct: 108 ---MTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALL--------ELRPAKNV-- 153
Query: 1410 DSVSFDKEKCVCCTVECGGQSLIHGPGTRGYG----VANIGITRGCYQWKFLIVNEHK-- 1463
LI G G G ++ C +K + K
Sbjct: 154 ---------------------LIDGVL--GSGKTWVALDV-----CLSYKVQCKMDFKIF 185
Query: 1464 ----GNEGTCIGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPS--FTQGDYI 1517
N + V ++ ++ + +S N+ Y
Sbjct: 186 WLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 1518 T--VVLD-------MDA-----QTL---------SFGKNGEEPHLAFQDLDTSAPLYPIV 1554
+VL +A + L F H++ +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT------- 297
Query: 1555 LFYSTNANGEKVKITDMTVCETPRDLLCGEPYCAPVPILMVESYIS-LLRQ-LHKIDRWK 1612
+K D + PR++L P S I+ +R L D WK
Sbjct: 298 -LTPDEVKSLLLKYLDCRPQDLPREVLTTNP--------RRLSIIAESIRDGLATWDNWK 348
Query: 1613 AHVNQCLLDRLSVIKELTAAAEEDNASAFVPQADKGR---LVL--EEAQ--MELLCREVW 1665
HVN D+L+ I E + E P + L + A LL +W
Sbjct: 349 -HVN---CDKLTTIIESSLNVLE-------PAEYRKMFDRLSVFPPSAHIPTILLSL-IW 396
Query: 1666 PALVVMGGGDDGLRMGGKCVEKPSGRVGTLLGTLKEGIAKVKDLNFDEIDLPRDYSQQLL 1725
++ D + + K + + KE + + + + + + L
Sbjct: 397 FDVIK----SDVMVVVNKLHKY-----SLVEKQPKESTISIPSIYLE-LKVKLENEYALH 446
Query: 1726 RASVQGHRLVSQQQLWDFNPLDASS----------SQTRRSRLVAMF------------- 1762
R+ V + + D P + +F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 1763 ---SGNQESAR----------------LTRSHPVL-RSVG-LSSPLPKFEELSLDSEYCT 1801
+A + + P R V + LPK EE + S+Y
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 1802 MCESVVPTNNSGDLRSHYEEVH 1823
+ + + +EE H
Sbjct: 567 LLRIALMAEDEA----IFEEAH 584
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus
musculus} SCOP: b.29.1.22
Length = 226
Score = 87.1 bits (215), Expect = 5e-19
Identities = 39/214 (18%), Positives = 70/214 (32%), Gaps = 29/214 (13%)
Query: 1368 PRTVAHHNALKKEEELDKQIEHLYCPPPSGTSNASRQGYVDIDSVSFDKEKC-VCCTVEC 1426
++ AL + + +E L PP ++ + C V+
Sbjct: 5 RQSTPTSQALYSDFSPPEGLEELLSAPPPDLVAQRHH--------GWNPKDCSENIDVKE 56
Query: 1427 GGQSLIHGPGTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTCIGV--TRWPIRDYNH 1482
GG P + G +RG + W+ E +G +GV P++ ++
Sbjct: 57 GGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHA-VVGVATALAPLQADHY 115
Query: 1483 R----TTGDMWLYRAYSGNVYHSGEQT--------TMLPSFTQGDYITVVLDMDAQTLSF 1530
+ + W + G +YH + + + VVLDM+ TL +
Sbjct: 116 AALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGY 175
Query: 1531 GKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGE 1564
G AF+ L LYP V + +
Sbjct: 176 SIGGTYLGPAFRGLKGR-TLYPSV--SAVWGQCQ 206
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 87.1 bits (215), Expect = 5e-19
Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 30/199 (15%)
Query: 1387 IEHLYCPPPSGTSNASRQGYVDIDSVSFDKEKC-VCCTVECGGQSLIHGPGTRGYGV--A 1443
+E L PP ++ + C V+ GG P +
Sbjct: 27 LEELLSAPPPDLGAQ--------RRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARG 78
Query: 1444 NIGITRGCYQWKFLIVNEHKGNEGTCIGVTR--WPIRDYNHR----TTGDMWLYRAYSGN 1497
G +RG + W+ E +G +GV P++ ++ + + W + G
Sbjct: 79 KRGYSRGLHAWEISWPLEQRGTHA-VVGVATALAPLQTDHYAALLGSNSESWGWDIGRGK 137
Query: 1498 VYHSGEQT--------TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAP 1549
+YH + T + + VVLDM+ TL + G AF+ L
Sbjct: 138 LYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGL-KGRT 196
Query: 1550 LYPIVLFYSTNANGEKVKI 1568
LYP V S +V+I
Sbjct: 197 LYPAV---SAVWGQCQVRI 212
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation,
transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A
2v24_A 2ihs_A
Length = 212
Score = 83.2 bits (205), Expect = 7e-18
Identities = 40/199 (20%), Positives = 69/199 (34%), Gaps = 24/199 (12%)
Query: 1391 YCPPPSG--TSNASRQGYVDIDSVSFDKEKC-VCCTVECGGQSLIH-GPGTRGYGV--AN 1444
YC P + Y S++ + V+ + + H P +
Sbjct: 10 YCKPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGK 69
Query: 1445 IGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYNHRT----TGDMWLYRAYSGNVY 1499
+G TRG + W+ +G + P+ + T + W + +Y
Sbjct: 70 VGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLY 129
Query: 1500 HSGEQT---------TMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPL 1550
H G+ +F D V LDMD TLSF +G+ +AF+ L L
Sbjct: 130 HDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGK-KL 188
Query: 1551 YPIVLFYSTNANGEKVKIT 1569
YP+V S ++++
Sbjct: 189 YPVV---SAVWGHCEIRMR 204
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein
structural and functional analyses; 2.00A {Homo sapiens}
Length = 171
Score = 80.4 bits (198), Expect = 2e-17
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 33/182 (18%)
Query: 1397 GTSNASRQGYV--DIDSVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQW 1454
G+S +S ++ D D++S+ VA+ +T+ +
Sbjct: 1 GSSGSSGFKHILVDGDTLSYHGNSGEVGCY-----------------VASRPLTKDSNYF 43
Query: 1455 KFLIVNEHKGNEGTC-IGVTRWPIR-DYNHRTTGDMWLYRAYSGNVYHSGEQTTML-PSF 1511
+ IV+ G GT +G+ D+ D Y A G +Y+ +
Sbjct: 44 EVSIVD--SGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKC 101
Query: 1512 TQGDYITV-----VLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKV 1566
GD I D+ + F KNG+ + L+P V +S GE+V
Sbjct: 102 NSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMSPD-GLFPAVGMHS---LGEEV 157
Query: 1567 KI 1568
++
Sbjct: 158 RL 159
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 73.4 bits (181), Expect = 1e-14
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLE--GKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
++ V Q + + K+V LL L+ LIF + D I + + + +
Sbjct: 25 AASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84
Query: 1113 SNNGTSWSH-----VECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQVIIYNLPLS 1165
H E + + F GK +++ T D G DF ++ VI Y++P
Sbjct: 85 --------HGGKDQEERTKAIEAFREGKKDVLVAT--DVASKGLDFPAIQHVINYDMPEE 134
Query: 1166 INHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
I +YV +I +G+ A F + D + L LL + + VP
Sbjct: 135 IENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVP 182
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 71.1 bits (175), Expect = 6e-14
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLE----GKRSLIFVKTYRDASRIISAVQDSNMMTI 1110
S+ + Q ++ +S K LL L +L+FV+T + A + +
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 1111 PMSNNGTSWSH-----VECLELLNLFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLS 1165
+ H + E L+ F +GKS +++ T G D +NV+ VI ++LP
Sbjct: 75 SI--------HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 126
Query: 1166 INHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
I YV +I G+ A +F++ +I + L+ LL + + VP
Sbjct: 127 IEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.2 bits (179), Expect = 9e-13
Identities = 95/606 (15%), Positives = 180/606 (29%), Gaps = 196/606 (32%)
Query: 824 SIVHSLLINIHRSMYPTLRYFLAILPLLDSLNQLLPMQGNYTETNSFLWLIDMERALALL 883
S+ H LL+ PT +F+A L + N++LP T F D A L
Sbjct: 15 SLEHVLLV-------PTASFFIA-SQLQEQFNKILP-----EPTEGF-AADDEPTTPAEL 60
Query: 884 IGKTLGDMLLGPPEAHEETETVHWLKTSLLSAGLEPSTAIIDIDKFVRD-MRHVSNNI-- 940
+GK LG + E + + L L +F + N+I
Sbjct: 61 VGKFLG-YVSSLVEPSKVGQFDQVLNLCL--------------TEFENCYLEG--NDIHA 103
Query: 941 ----LMSPNYESDVNKYSVLLKY------IPQQYKNLVYSYLIQQTALSPREKTV----- 985
L+ N + V ++ Y + + S L + A+ +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR--AVGEGNAQLVAIFG 161
Query: 986 -----------LEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWG 1034
L ++ + +L+ + + + +F+ G
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET---------LSELIRTTLDAEKVFTQG 212
Query: 1035 -DIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTY- 1092
+I E +E+P P K YL+ P S ++ ++ ++ K
Sbjct: 213 LNILEW----LENPSNT---PD-----KDYLLSIPISCPLIGVIQLA---HYVVTAKLLG 257
Query: 1093 ------RDASR--------IISAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSL 1138
R + +++AV I ++ SW + F + + ++
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAV------AIAETD---SWE--------SFFVSVRKAI 300
Query: 1139 VIMTLSDFIGNDFTNVEQVI-IYNLPLSINHYVFQIAGHKEAIAFYDP---VADIGLASS 1194
++ FIG + +LP SI + + E + P ++++
Sbjct: 301 TVLF---FIG---VRCYEAYPNTSLPPSI---LEDSLENNEGVP--SPMLSISNLTQEQ- 348
Query: 1195 LIKLLEYSNKHVPTHPHA-----NG----------------NTLLREVSSNMIHILAIAC 1233
+ + +N H+P NG N LR+
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-----------K 397
Query: 1234 ANHIEDLNE---SVRSKLTSCLHVYLETLLP---P--SDTQGNLEHDVHNHTEERNLAYY 1285
A D + S R KL + +L P + D+ + N A
Sbjct: 398 APSGLDQSRIPFSER-KLK-FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKD 454
Query: 1286 LSF-IYS------LTSVST-----VCQLLATQP--WIQSL----LYLLSISPSGLCKLNL 1327
+ +Y L +S + + P W + ++L P G L +
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 1328 LRARLL 1333
L R
Sbjct: 515 LTHRNK 520
Score = 72.8 bits (178), Expect = 1e-12
Identities = 93/611 (15%), Positives = 171/611 (27%), Gaps = 245/611 (40%)
Query: 450 GLGLRSSSISFHTPVLVTGLSSHQIVDVSI---GDSHVLALSQYNEVYAWGSNTMGQCGQ 506
R ++S H ++ + S +A SQ Q
Sbjct: 3 AYSTRPLTLS------------HGSLEHVLLVPTASFFIA-SQL---------------Q 34
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFS-----IAYTVPPSNSALSSAFTPLCV--- 558
+ F+ + +P++ +D L ++ V PS LC+
Sbjct: 35 EQFNKILPEPTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 559 --------DVRPHTFT----------------LIREFLEQYSACFETGDYIPFCSKVTHA 594
D+ H LI+ + +A PF K A
Sbjct: 92 ENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNY---ITARIMAK--RPFDKKSNSA 144
Query: 595 QFILLLLRLLSS---HLYLALIGARSSSVLGN------ETAALRHVLFKLVDMETSPEIE 645
L R + L A+ G + GN E LR L+ +T
Sbjct: 145 -----LFRAVGEGNAQLV-AIFGGQ-----GNTDDYFEE---LRD-LY-----QTYH--- 181
Query: 646 TLLTDCLAIGASLLLPPVVEQLDLLKTLLSQDHPLSNGQRMLLGVIT--SSLHKNEELAH 703
L+ D + A L L++T L + + G +L + S+ + L
Sbjct: 182 VLVGDLIKFSAETLSE-------LIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLS 233
Query: 704 IFYFDQNQDTNILMLEDLLKISCRKSYAYTLTHFQSNACKV---SPQE-TPVSQVVTLLQ 759
I ISC L H+ K+ +P E + T
Sbjct: 234 IP------------------ISCPLIGVIQLAHYV-VTAKLLGFTPGELRSYLKGATGHS 274
Query: 760 SLIITQYVVKHSEICEEVYQHYLDIV-------------FPH------------------ 788
++T + ++ E + + +P+
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 789 ------VIDI----LERSIAWVNQ----GKDIEVLNELLYNS-----LAG--KILFSIVH 827
+ ++ ++ + N GK +E+ L N ++G + L+ +
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI---SLVNGAKNLVVSGPPQSLYGLNL 391
Query: 828 SLL-------INIHRSMY----PTLRY-FLAIL-----PLLDSLNQLLP---MQGN---- 863
+L ++ R + FL + LL + L+ ++ N
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 864 --------Y-TETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETETVHWLKTSLLS 914
Y T S D+ R L+ I + + D ++ V W T+
Sbjct: 452 AKDIQIPVYDTFDGS-----DL-RVLSGSISERIVDCII--------RLPVKWETTTQFK 497
Query: 915 AGLEPSTAIID 925
A T I+D
Sbjct: 498 A-----THILD 503
Score = 67.4 bits (164), Expect = 4e-11
Identities = 112/686 (16%), Positives = 202/686 (29%), Gaps = 272/686 (39%)
Query: 624 ETAALRHVLFKLVDMETSPEIETLLTDCLAIGASLLLP----PVVEQL--DLLKTL---- 673
+ + R L + +E LL+P + QL K L
Sbjct: 2 DAYSTRP--LTL----SHGSLEH----------VLLVPTASFFIASQLQEQFNKILPEPT 45
Query: 674 ---LSQDHPLSNGQRML----LGVITSSLHKNEE------LAHIF-YFDQN--QDTNI-- 715
+ D P + + L LG ++S + ++ L F+ + +I
Sbjct: 46 EGFAADDEPTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 716 ----LMLEDLLKISCRKSY--AYTLTHFQSNACKVSPQETPVS------------QVVTL 757
L+ E+ + K Y + P + + Q+V +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNY----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 758 -------------LQSL------IITQYVVKHSEICEEVYQHYLDI--VFPHVIDILERS 796
L+ L ++ + +E E+ + LD VF ++IL
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL--- 216
Query: 797 IAWVNQGKDIEVLNELLYNSLAGKILFSIVHSLLINIHRSMYPTLRYFLAI---LPLLDS 853
W+ + S P Y L+I PL+
Sbjct: 217 -EWLE--------------------------------NPSNTPDKDYLLSIPISCPLI-G 242
Query: 854 LNQLLPMQGNYTETNSFLWLIDMERALALLIGKTLGDMLLGPPEAHEETE--TVHWLKTS 911
+ QL +Y ++ K LG P E + T H
Sbjct: 243 VIQL----AHY-----------------VVTAKLLG---FTPGELRSYLKGATGH----- 273
Query: 912 LLSAGLEPSTAIIDIDKFVRDMRHVSNNILMSPNYES---DVNKYSVLLKYI---PQQ-Y 964
S GL TA+ I + ++ES V K +L +I + Y
Sbjct: 274 --SQGL--VTAVA---------------IAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 965 KNLVYSYLIQQTALSPREKT------V----LEQIFSVVNKFRAEL-----LS-AVSNAP 1008
N I + +L E + EQ+ VNK + L + ++ N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 1009 SFDDNNVSMGVTSTQHNSTDSLFSWGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTP 1068
N V V+ SL+ N+ + K PS + Q R P
Sbjct: 375 ---KNLV---VSG----PPQSLYGL-------NLTLR----KAKAPSG---LDQS--RIP 408
Query: 1069 KSQ-KIVNLLSFLEGKRSLIFV----KTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVE 1123
S+ K+ FL + AS +I +D + N S++ +
Sbjct: 409 FSERKLKFSNRFLP-----VASPFHSHLLVPASDLI--NKD-------LVKNNVSFNAKD 454
Query: 1124 CLELLNL--FNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGHKEAIA 1181
+ + ++T G+D +V+ ++ I + ++ E
Sbjct: 455 ----IQIPVYDTFD------------GSDL----RVLSGSISERIVDCIIRLPVKWETTT 494
Query: 1182 FYDP--VADIG-LASSLIKLLEYSNK 1204
+ + D G +S + +L + NK
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNK 520
Score = 65.8 bits (160), Expect = 1e-10
Identities = 88/565 (15%), Positives = 167/565 (29%), Gaps = 177/565 (31%)
Query: 354 LGHGDLKSRHT---PT----LVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGK-L 405
L HG L H PT + ++L + E T + D +GK L
Sbjct: 11 LSHGSL--EHVLLVPTASFFIASQLQEQFNKILPEP-TEGFAADDEPTTPAEL--VGKFL 65
Query: 406 GH-----EDTGKVTTPKVIE-ALRKFRVRKVCAGT---SFSVALTWDGLVFWWGLGLRSS 456
G+ E + +V+ L +F G + + L L +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKL----------LQENDT 114
Query: 457 SISFHTPVLVTGLSSHQIVDVSIGDSHVLAL-----SQYNEVYAWGSNTMGQCGQDNFSN 511
++ ++ +++ + AL ++ A G GQ N +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA----IFG--GQGNTDD 168
Query: 512 PVDQ-------PSKVVG---------LEDVCVRQICAGSLFSIAYTV---------PPSN 546
++ +VG L ++ + A +F+ + P
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 547 SALSSAFTPLCVDVRPHTFTLIREFLEQYSACFETGDYIPFC--SKVTHAQFILLLLRLL 604
L S P + LI + Q + Y+ T + L+
Sbjct: 229 DYLLSI---------PISCPLI--GVIQLAH------YVVTAKLLGFTPGEL-RSYLKGA 270
Query: 605 SSH---LYLALIGARSSSV---LGNETAALRHVLFK--LVDMETSPEIE---TLLTDCLA 653
+ H L A+ A + S + A+ VLF + E P ++L D L
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 654 IG---ASLLL-------PPVVEQLDLLKTLLSQDHPLS----NGQRMLLGVIT---SSLH 696
S +L V + ++ + L + NG + L V++ SL+
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGPPQSLY 387
Query: 697 KNEELAHIFYFDQNQDTNILMLEDLLKISCRKSYAYTLTHFQSNACKVSPQETPVSQ--V 754
L ++ RK+ A + QS P S+ +
Sbjct: 388 ------------------------GLNLTLRKAKAPS-GLDQS--------RIPFSERKL 414
Query: 755 VTLLQSLIITQYVVKHSEICEEVYQHYLDIVFPHVI-DILERSIAW-----------VNQ 802
+ L + HS H L + D+++ ++++
Sbjct: 415 KFSNRFLPVA--SPFHS--------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 803 GKDIEVLNELLYNSLAGKILFSIVH 827
G D+ VL+ + + I+ V
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVK 489
Score = 59.3 bits (143), Expect = 1e-08
Identities = 85/578 (14%), Positives = 154/578 (26%), Gaps = 231/578 (39%)
Query: 12 EQL-DTFWSNEKLENIILRSSSVATSTLGNQVLTTS--------LS-IVRNLPPLSLSNE 61
QL + F + T T+ L + + P +
Sbjct: 31 SQLQEQF----------NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 62 TQLSSLGIESLTQVSTFLRQ----TVTSTSPKADKTVQSSLRSRVPLTKSLPPYNAALNL 117
Q+ +L + + +L + + + + T +L L K+ Y A +
Sbjct: 81 DQVLNLCLTEFE--NCYLEGNDIHALAAKLLQENDT---TLVKTKELIKN---YITARIM 132
Query: 118 LEEVLRPATHYQVDLIRSACLVYLILVTLADDNIKPL-------GDRKSSNSNT------ 164
+ RP SA L + L G N++
Sbjct: 133 AK---RPFDKKS----NSA------LFRAVGEGNAQLVAIFGGQG-----NTDDYFEELR 174
Query: 165 DIDSTSTP---KLTYNIGDTDISVAHS-----KVYTWGCNLHHQILDEVRGKCSRPRLQ- 215
D+ T L +T + + KV+T G N IL+ + + P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDKDY 230
Query: 216 ------SLPSNIRHIEAGQFCTF-------------LLDSTGGLLVYGKG---------- 246
S P I Q + L G + +G
Sbjct: 231 LLSIPISCPL----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 247 ------------------WLGLA------NTTIQP------------LP---------KR 261
++G+ NT++ P +P +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 262 VPLEAAI------------VSLSVSKCSEAHVLTVTSEGEVYS-WGVGEH---GKLGHGN 305
++ + V +S+ ++ V++ G S +G+ K G
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS----GPPQSLYGLNLTLRKAKAPSGL 402
Query: 306 T-----LSQRRPKLIMGGLYGKRVTQVSAG-HSH---SAA------VTEDGLLYTWGE-- 348
S+R+ K L V++ HSH A+ + ++ + + +
Sbjct: 403 DQSRIPFSERKLKFSNRFL------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 349 --------GDHGRLGHGDLKSRHTPTLVTELSD-VGAVSCGESHTLVLSQDGHTVWSMGS 399
G R+ G + R ++ +H L G S
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG------AS 510
Query: 400 GNLGKLGH---EDTGKVTTPKVIEALRKFRVRKVCAGT 434
G LG L H + TG VR + AGT
Sbjct: 511 G-LGVLTHRNKDGTG---------------VRVIVAGT 532
Score = 56.6 bits (136), Expect = 9e-08
Identities = 125/773 (16%), Positives = 196/773 (25%), Gaps = 340/773 (43%)
Query: 1163 PLSINHYVFQIAGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPT--HPHANGNTLLRE 1220
PL+++H G LE+ VPT A + L+E
Sbjct: 8 PLTLSH------GS----------------------LEHVL-LVPTASFFIA---SQLQE 35
Query: 1221 VSSNMIHILAIACANHIEDLNESVRSKLTSCLHVYLETLLPPSDTQGNLEHDVHNHTEER 1280
+ + L P++ D T
Sbjct: 36 Q---------------------------------FNKILPEPTE---GFAADDEPTTPAE 59
Query: 1281 NLAYYLSFIYSLTSVSTVCQLLATQPWIQSLLYLLSISPSGLCKLNLLRARLLTLN---L 1337
+ +L ++ SL S V Q +L L L L N
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQF-------DQVLNLC---------LTEFENCYLEGNDIHA 103
Query: 1338 LTAILPHAQQGELGIITELLTQLSHNMWKVPRTVAHHNALKKEEELDKQIEHLYCPPPSG 1397
L A L L EL+ N + + + S
Sbjct: 104 LAAKLLQENDTTLVKTKELIK----------------NYITARIMAKRPFDK---KSNSA 144
Query: 1398 TSNASRQGYVDIDSVSFDKEKCVCCTVECGGQSLIHGPGTRGYGVANIGITRGCYQWKFL 1457
A +G + ++ F GGQ G T ++
Sbjct: 145 LFRAVGEGNAQLVAI-F------------GGQ----------------GNTDDYFE---- 171
Query: 1458 IVNEHKGNEGTCIGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQGDYI 1517
E +RD LY+ Y V GD I
Sbjct: 172 --------E----------LRD----------LYQTYHVLV---------------GDLI 188
Query: 1518 TVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVL-FYS--TNANGEKVKITDMTVC 1574
A+TLS L LD ++ L N +
Sbjct: 189 KFS----AETLS--------ELIRTTLDAE-KVFTQGLNILEWLENPS------------ 223
Query: 1575 ETPRDLLCGEPYCAPVPILMVESY--ISLLRQLHKIDRWKAH-VNQC---------LLDR 1622
TP + Y +PI S I ++ QL AH V L
Sbjct: 224 NTP-----DKDYLLSIPI----SCPLIGVI-QL-------AHYVVTAKLLGFTPGELRSY 266
Query: 1623 LS----VIKELTAA---AEEDNASAFVPQADKGRLVLEEAQMELL------CREVWPALV 1669
L + L A AE D+ +F K + +L C E +P
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKA--------ITVLFFIGVRCYEAYPNTS 318
Query: 1670 VMGGGDDGLRMGGKCVEKPSGRVGTLLGTLKEGIAKVKDLNFDEID---------LPRDY 1720
+ + +E G +L + +L +++ LP
Sbjct: 319 L------PPSILEDSLENNEGVPSPMLS--------ISNLTQEQVQDYVNKTNSHLPAG- 363
Query: 1721 SQQLLRASVQGHR-LV---SQQQLWDFNP----LDASSS--QTRRSRLVAMFSGNQESAR 1770
+Q+ + V G + LV Q L+ N A S Q+R FS + +
Sbjct: 364 -KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR-----IPFS--ERKLK 415
Query: 1771 LTRS--------H-PVLRSV--GLSSPLPKFEELSLDSEYCTMCESVVPTNNSGDLRSHY 1819
+ H +L ++ L K +S +++ + V T + DLR
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQI--PVYDTFDGSDLRVLS 472
Query: 1820 EEVHPG-----CNKPA-----------------PPPASGIRCGSVHVAHGVGV 1850
+ P P ASG+ + G GV
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Score = 38.5 bits (89), Expect = 0.025
Identities = 51/309 (16%), Positives = 84/309 (27%), Gaps = 120/309 (38%)
Query: 1589 PVPILMVESYISLLRQLHKIDRWKAHVNQ-----CLLDRLSVIKELTA--------AAEE 1635
VP S+ + QL +++ + + D + EL E
Sbjct: 21 LVP---TASFF-IASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 1636 DNASAFVPQADKGRLVLEEAQMELLCREVWPALVVMGGGDD--GLRMGGKCVEKPSGRVG 1693
F L L E + L G+D L
Sbjct: 75 SKVGQFDQVL---NLCLTEFENCYL------------EGNDIHAL-------------AA 106
Query: 1694 TLLGTLKEGIAKVKDLNFDEIDLPRDYSQQLLRASVQGHRLVSQQQ---LWDFNPLDASS 1750
LL + K K+L I ++Y + A + R ++ L+ +
Sbjct: 107 KLLQENDTTLVKTKEL----I---KNY----ITARIMAKRPFDKKSNSALFR-------A 148
Query: 1751 SQTRRSRLVAMFSGNQESARLTRSHPVLRSVGLSSPLPKFEEL-SLDSEYCTMCESVVPT 1809
++LVA+F G Q G + FEEL L Y + ++
Sbjct: 149 VGEGNAQLVAIFGG-Q---------------GNTDDY--FEELRDLYQTYHVLVGDLIKF 190
Query: 1810 ---------NNSGDLRSHYEEVHPGCN--------KPAPP-------PAS--GIRCGSVH 1843
+ D + + G N P P S I G +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQ---GLNILEWLENPSNTPDKDYLLSIPISCPLI--GVIQ 245
Query: 1844 VAHGVGVCR 1852
+AH V +
Sbjct: 246 LAHYVVTAK 254
Score = 36.6 bits (84), Expect = 0.12
Identities = 43/279 (15%), Positives = 78/279 (27%), Gaps = 95/279 (34%)
Query: 1520 VLD-MDAQTLS-FGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDMT-VCET 1576
V + D +G + D+ + P+ + F G++++ + ET
Sbjct: 1645 VWNRADNHFKDTYG-------FSILDIVINNPVNLTIHF--GGEKGKRIRENYSAMIFET 1695
Query: 1577 PRDLLCGEPYCAPV---------------------------PILMVESY--ISLLRQLHK 1607
D G+ + P L + L+
Sbjct: 1696 IVD---GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 1608 IDRWKA---HVNQCLLDRLSVIKE---LTAAAE----EDNASAFVPQADKGRLVLEEAQM 1657
I H S+ E L + A+ E V +G +
Sbjct: 1753 IPADATFAGH---------SL-GEYAALASLADVMSIES-LVEVV--FYRGMTMQVAVPR 1799
Query: 1658 ELLCRE------VWPALVVMGGGDDGLRMGGKCVEKPSGRV----------------GTL 1695
+ L R + P V + L+ + V K +G + G L
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 1696 --LGTLKEGIAKVKDLNFDEIDLPRDYSQQLLRASVQGH 1732
L T+ + +K D I+L + S + V+GH
Sbjct: 1860 RALDTVTNVLNFIKLQKIDIIELQKSLSLE----EVEGH 1894
Score = 33.1 bits (75), Expect = 1.2
Identities = 53/315 (16%), Positives = 89/315 (28%), Gaps = 129/315 (40%)
Query: 922 AIIDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPR 981
+I+DI V NN P ++ K I + Y +++
Sbjct: 1660 SILDI---------VINN----PV-NLTIHFGGEKGKRIRENYSAMIFET-------IVD 1698
Query: 982 EKTVLEQIFSVVNK------FR--AELLS----------AVSNAP--------SFDDNNV 1015
K E+IF +N+ FR LLS + A +
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 1016 SMGVTSTQHNSTDSL--FS----WGDIEEESNIEVEDPIMKLVKPSSVHLVKQYLIRTPK 1069
G H SL ++ D+ + +E V +V R
Sbjct: 1759 FAG-----H----SLGEYAALASLADV-----MSIES---------LVEVVFY---RGMT 1792
Query: 1070 SQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSWSHVECLELLN 1129
Q V +I + + R+ ++ + + VE +
Sbjct: 1793 MQVAVPRDELGRSNYGMIAI----NPGRVAASFSQEALQYV-----------VERVGK-- 1835
Query: 1130 LFNTGKSSLVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYVFQIAGHKEAIAFYDPVADI 1189
TG LV I N YN+ YV AG A+ D V ++
Sbjct: 1836 --RTGW--LV------EIVN----------YNVENQQ--YV--AAGDLRAL---DTVTNV 1868
Query: 1190 GLASSL----IKLLE 1200
+ + I ++E
Sbjct: 1869 --LNFIKLQKIDIIE 1881
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 70.3 bits (173), Expect = 2e-12
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 33/172 (19%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFL--EGKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
+ VKQ + K K L+ L + +++FV+T R A + S + + T +
Sbjct: 271 GACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSI 330
Query: 1113 SNNGTSWSH-----VECLELLNLFNTGKSSLVIMT------LSDFIGNDFTNVEQVIIYN 1161
H + + L F G ++I T L D N++ VI Y+
Sbjct: 331 --------HGDRLQSQREQALRDFKNGSMKVLIATSVASRGL------DIKNIKHVINYD 376
Query: 1162 LPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
+P I+ YV +I G+ A +F+DP D +A+ L+K+LE S + VP
Sbjct: 377 MPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 64.9 bits (159), Expect = 1e-10
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 36/174 (20%)
Query: 1055 SSVHLVKQYLIRTPKSQKIVNLLSFLE----GKRSLIFVKTYRDASRIISAVQDSNMMTI 1110
S+ + Q ++ +S K LL L +L+FV+T + A + +
Sbjct: 245 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 304
Query: 1111 PMSNNGTSWSH-----VECLELLNLFNTGKSSLVIMT------LSDFIGNDFTNVEQVII 1159
+ H + E L+ F +GKS +++ T L D +NV+ VI
Sbjct: 305 SI--------HGDRSQRDREEALHQFRSGKSPILVATAVAARGL------DISNVKHVIN 350
Query: 1160 YNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKHVP 1207
++LP I YV +I G+ A +F++ +I + L+ LL + + VP
Sbjct: 351 FDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVP 403
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 62.2 bits (151), Expect = 1e-10
Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 21/138 (15%)
Query: 1436 GTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTC-IGVTRWPIRDYN-HRTTGDM--- 1488
G +GY + A+ G+ +G + ++ + + +G ++ N G
Sbjct: 35 GEKGYSMVRASHGVRKGAWYFEITVD--EMPPDTAARLGWSQ---PLGNLQAPLGYDKFS 89
Query: 1489 WLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQTLS--------FGKNGEEPHLA 1540
+ +R+ G +H + QGD + +++ T+S F KNG +A
Sbjct: 90 YSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVA 149
Query: 1541 FQDLDTSAPLYPIVLFYS 1558
++D+ +P + Y
Sbjct: 150 YKDI-FEGVYFPAISLYK 166
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 43.7 bits (104), Expect = 5e-04
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 45/176 (25%)
Query: 1046 DPIMKLVKPS--SVHLVKQYLIRTPK-SQK---IVNLLSFLEGKRSLIFVKTYRDASRII 1099
+ +K SV +KQ + K +V L L +S+IF K A I
Sbjct: 315 NANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIA 374
Query: 1100 SAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI-- 1147
M+ +G + V CL +++ F G S +++ T + I
Sbjct: 375 RR----------MTADGHT---VACLTGNLEGAQRDAIMDSFRVGTSKVLVTT--NVIAR 419
Query: 1148 GNDFTNVEQVIIYNLPLSINH------YVFQI-----AGHK-EAIAFYDPVADIGL 1191
G D + V V+ Y++PL Y+ +I G +I F
Sbjct: 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEE 475
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like
fold, PRE-mRNA processing protein; 1.90A {Homo sapiens}
SCOP: c.37.1.19
Length = 172
Score = 39.9 bits (94), Expect = 0.002
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 1055 SSVHLVKQYLIRTPKSQK---IVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIP 1111
S+H ++QY ++ ++K + +LL LE + +IFVK+ + + + + N I
Sbjct: 1 GSLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 1112 MSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQVIIYNLPLSINHY 1169
+ E L F + +++ T + G D V Y++P + Y
Sbjct: 61 IHRG---MPQEERLSRYQQFKDFQRRILVAT--NLFGRGMDIERVNIAFNYDMPEDSDTY 115
Query: 1170 VFQI-----AGHK-EAIAFYDPVADI 1189
+ ++ G K AI F D
Sbjct: 116 LHRVARAGRFGTKGLAITFVSDENDA 141
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 41.4 bits (98), Expect = 0.002
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 19/151 (12%)
Query: 1046 DPIMKLVKPSS---VHLVKQYLIRTPKSQKI---VNLLSFLEGKRSLIFVKTYRDASRII 1099
DP+ V + +H ++QY ++ ++K +LL LE + +IFVK+ + +
Sbjct: 208 DPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALA 267
Query: 1100 SAVQDSNMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQV 1157
+ + N I + + E L F + +++ T + G D V
Sbjct: 268 QLLVEQNFPAIAI--HR-GMPQEERLSRYQQFKDFQRRILVAT--NLFGRGMDIERVNIA 322
Query: 1158 IIYNLPLSINHYVFQI-----AGHK-EAIAF 1182
Y++P + Y+ ++ G K AI F
Sbjct: 323 FNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 39.5 bits (93), Expect = 0.010
Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 27/154 (17%)
Query: 1046 DPIMKLVKPS-SVHLVKQYLIRTPKSQKI---VNLLSFLEGKRSLIFVKTYRDASRIISA 1101
P + ++ + QY + QK+ L S L+ +++IF + +
Sbjct: 218 KPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKK 277
Query: 1102 VQDSNMMTIPMSNNGTSWSH-----VECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNV 1154
+ D H E ++ + F GK ++ + D + G D V
Sbjct: 278 ITDLGYSCYYS--------HARMKQQERNKVFHEFRQGKVRTLVCS--DLLTRGIDIQAV 327
Query: 1155 EQVIIYNLPLSINHYVFQI-----AGHK-EAIAF 1182
VI ++ P + Y+ +I GH AI
Sbjct: 328 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 37.8 bits (88), Expect = 0.033
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNGTSW 1119
+ I + +K+V LL LIF +T + + ++ N
Sbjct: 231 ITHVRISSRSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKF-------NVGE- 281
Query: 1120 SHVECLELLNLFNTGKSSLVIMTLSDFI----GNDFTN-VEQVIIYNLP--LSINHYVFQ 1172
+ E + F GK +++I + + G D ++ VI + P + Y+
Sbjct: 282 TWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQA 341
Query: 1173 I--------AGHKEAIAFYDPVADIGLASSLIKLLEYSNKHVPTHPHANGNTLLREV 1221
+ ++ + S +LL + + + AN L+ EV
Sbjct: 342 SGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEV 398
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 37.2 bits (87), Expect = 0.041
Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 56/162 (34%)
Query: 316 MGGLYGKRVTQVSAGH--------SHSAAVTEDGLLYTWGEGDH----------GRLGHG 357
+G YG + + AGH H A+ GL D +
Sbjct: 30 VGCYYGGMLAR--AGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGA 87
Query: 358 DL-----KSRHTPTLVTELSDVGAVSCGESHTLVLS-QDGHTVWSMGSGNLGKLGHEDTG 411
DL KS T + + + LVLS Q+G + + DT
Sbjct: 88 DLVLFCVKSTDTQSAALAMKPA----LAK-SALVLSLQNG-------------VENADT- 128
Query: 412 KVTTPKVIEALRKFRVRKVCAG-TSFSVALTWDGLVFWWGLG 452
LR ++V A + + G V G G
Sbjct: 129 ----------LRSLLEQEVAAAVVYVATEMAGPGHVRHHGRG 160
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural
genomics, NPPSFA; NMR {Drosophila melanogaster}
Length = 168
Score = 35.6 bits (82), Expect = 0.055
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 1513 QGDYITVVLDMDAQTLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDMT 1572
+ + + ++ + +G N EE + +DT + L+ ++ Y ++ D
Sbjct: 108 KDNILYYYVNGAGD-VIYGINNEEKGVILTGIDTRSLLWTVIDIYGNC---TGIEFLDSR 163
Query: 1573 VC 1574
+
Sbjct: 164 IY 165
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 34.8 bits (81), Expect = 0.11
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 36/154 (23%)
Query: 1053 KPSSVHLVKQYLIRTPKSQKI---VNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMT 1109
+ ++ +I+ + K ++L +IF +T +++ + D
Sbjct: 3 AGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYP- 61
Query: 1110 IPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQV 1157
+ + +++N F G+ ++ T D G D N+ V
Sbjct: 62 ------------CDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT--DVAARGIDIENISLV 107
Query: 1158 IIYNLPLSINHYVFQI-----AGHK-EAIAFYDP 1185
I Y+LPL YV + AG+K +AI+F
Sbjct: 108 INYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA 141
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 34.5 bits (80), Expect = 0.15
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 1057 VHLVKQYLIRTPKSQ----KIVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIPM 1112
+ +KQ+ + + + + +L + +++IF T R + + +++ +
Sbjct: 1 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60
Query: 1113 SNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQVIIYNLPLSINHYV 1170
++ E ++ F +G S ++I T D + G D V VI Y+LP + +Y+
Sbjct: 61 YSD---LPQQERDTIMKEFRSGSSRILIST--DLLARGIDVQQVSLVINYDLPANKENYI 115
Query: 1171 FQI-----AGHK-EAIAF 1182
+I G K AI F
Sbjct: 116 HRIGRGGRFGRKGVAINF 133
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 35.2 bits (82), Expect = 0.22
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 45/176 (25%)
Query: 1046 DPIMKLVKPS--SVHLVKQYLIRTP----KSQKIVNLLSFLEGKRSLIFVKTYRDASRII 1099
+ ++ + +V +KQ + K + L + S+IFV T + A+ +
Sbjct: 201 NANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLY 260
Query: 1100 SAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI-- 1147
+ + G V L L++ F G+S ++I T + +
Sbjct: 261 GK----------LKSEGHE---VSILHGDLQTQERDRLIDDFREGRSKVLITT--NVLAR 305
Query: 1148 GNDFTNVEQVIIYNLPLSINH------YVFQI-----AGHK-EAIAFYDPVADIGL 1191
G D V V+ Y+LP N Y+ +I G K AI+F +
Sbjct: 306 GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNI 361
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 34.4 bits (79), Expect = 0.46
Identities = 31/248 (12%), Positives = 84/248 (33%), Gaps = 54/248 (21%)
Query: 1053 KPSSVHLVKQYLIRTPKSQKIV---------NLLSFLEGKRSLIFVKTYRDASRIISAVQ 1103
+P + + Q ++ + K + + +++IF T + S + S ++
Sbjct: 250 EPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILK 309
Query: 1104 DSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI--GNDF 1151
+ +P + L+ F +S +++ T D G DF
Sbjct: 310 NEFKKDLP----------ILEFHGKITQNKRTSLVKRFKKDESGILVCT--DVGARGMDF 357
Query: 1152 TNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAFYDPVADIGLASSLIKLLEYSNKH 1205
NV +V+ +P + +Y+ +I +G + ++ F ++ ++ LE
Sbjct: 358 PNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELP----FVRELE----- 407
Query: 1206 VPTHPHANGNTLLREVSSNMIHILAIACANHIEDLNESVRSKLTSCLHVYLETLLPPSDT 1265
A + ++ + + + E + + S + Y + +
Sbjct: 408 -----DAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFS 462
Query: 1266 QGNLEHDV 1273
+ + ++
Sbjct: 463 ERRILPEI 470
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 33.4 bits (77), Expect = 0.71
Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 45/178 (25%)
Query: 1044 VEDPIMKLVKPS--SVHLVKQYLIRTPK-SQK---IVNLLSFLEGKRSLIFVKTYRDASR 1097
V DP + +K ++ +KQY + +K + NL + +++IF T + AS
Sbjct: 289 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 348
Query: 1098 IISAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI 1147
+ + +S G V L ++ F GK +++ T +
Sbjct: 349 LAAE----------LSKEGHQ---VALLSGEMMVEQRAAVIERFREGKEKVLVTT--NVC 393
Query: 1148 --GNDFTNVEQVIIYNLPLSINH------YVFQI-----AGHK-EAIAFYDPVADIGL 1191
G D V VI ++LP+ + Y+ +I G + A+ D + +
Sbjct: 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 451
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 33.3 bits (77), Expect = 0.76
Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 45/178 (25%)
Query: 1044 VEDPIMKLVKPS--SVHLVKQYLIRTPK-SQK---IVNLLSFLEGKRSLIFVKTYRDASR 1097
V DP + +K ++ +KQY + +K + NL + +++IF T + AS
Sbjct: 222 VPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASW 281
Query: 1098 IISAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI 1147
+ + +S G V L ++ F GK +++ T +
Sbjct: 282 LAAE----------LSKEGHQ---VALLSGEMMVEQRAAVIERFREGKEKVLVTT--NVC 326
Query: 1148 --GNDFTNVEQVIIYNLPLSINH------YVFQI-----AGHK-EAIAFYDPVADIGL 1191
G D V VI ++LP+ + Y+ +I G + A+ D + +
Sbjct: 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 384
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A,
confirmed by transcript...; lipid transport; HET: CSX;
1.80A {Caenorhabditis elegans}
Length = 140
Score = 32.0 bits (72), Expect = 0.81
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 954 SVLLKYIPQQYKNLVYSYLIQQ-TALSPREKTVLEQIFSVVNKFRAE 999
++ + +P+ KN + ++ ++++ EK VL ++F + F
Sbjct: 2 AMSVASLPECVKNFFPTEQLEFSSSITADEKPVLHEVFQKHSCFSQC 48
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics,
structural consortium, SGC, alternative initiation,
ATP-binding, devel protein; 2.80A {Homo sapiens}
Length = 175
Score = 32.2 bits (74), Expect = 0.88
Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 43/158 (27%)
Query: 1056 SVHLVKQYLIRTPKSQK----IVNLLSFLEGKRSLIFVKTYRDASRIISAVQDSNMMTIP 1111
+++ ++QY + + + N+ + +++IF +T R+A +
Sbjct: 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVE---------- 53
Query: 1112 MSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI--GNDFTNVEQVII 1159
M +G V L ++ F GK ++I T + G D V V+
Sbjct: 54 MIQDGHQ---VSLLSGELTVEQRASIIQRFRDGKEKVLITT--NVCARGIDVKQVTIVVN 108
Query: 1160 YNLPLSINH------YVFQI-----AGHK-EAIAFYDP 1185
++LP+ Y+ +I G K A +
Sbjct: 109 FDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV 146
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.95
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 14/38 (36%)
Query: 80 RQTVTSTSPKADKTVQSSLRSRVPLTKSLPPYNA-ALN 116
+Q + K +Q+SL+ S P A A+
Sbjct: 19 KQAL--------KKLQASLKLYAD--DSAP---ALAIK 43
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding,
hydrolase, nucleotide-binding, RNA binding protein,
structural genomics; 1.90A {Sulfolobus tokodaii}
Length = 337
Score = 32.9 bits (76), Expect = 1.1
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 31/152 (20%)
Query: 1046 DPIMKLVKPSSVHLVKQYLIRTPKSQK-IVNLLSFLEGKRSLIFVKTYRDASRIISAVQD 1104
+ + V+ + + V L + K ++FV+T ++++ +
Sbjct: 184 NYEEIEACIG-LANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN 242
Query: 1105 S-----NMMTIPMSNNGTSWSHVECLELLNLFNTGKSSLVIMTLSDFI---GNDFTNVEQ 1156
+ ++ ++ F G+ ++I T D + G D VE+
Sbjct: 243 AIELRGDL------------PQSVRNRNIDAFREGEYDMLITT--D-VASRGLDIPLVEK 287
Query: 1157 VIIYNLPLSINHYVFQI-----AGHK-EAIAF 1182
VI ++ P + Y+ +I G K EAI F
Sbjct: 288 VINFDAPQDLRTYIHRIGRTGRMGRKGEAITF 319
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 32.8 bits (74), Expect = 1.1
Identities = 29/273 (10%), Positives = 80/273 (29%), Gaps = 26/273 (9%)
Query: 924 IDIDKFVRDMRHVSNNILMSPNYESDVNKYSVLLKYIPQQYKNLVYSYLIQQTALSPREK 983
I+ ++ + + +E + K + + + ++ L E
Sbjct: 182 IEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241
Query: 984 TVLEQIFSVVNKFRAELLSAVSNAPSFDDNNVSMGVTSTQHNSTDSLFSWG--------- 1034
+ + V + + ++ + + + + L
Sbjct: 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301
Query: 1035 -DIEEESNIEVEDPIMKLVKPSSVHLVKQYLIR-------TPKSQKIVNLLSFL----EG 1082
+ EE+ ++ + L++ PK K+ ++ +
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQN 361
Query: 1083 KRSLIFVKTYRDASRIISAVQDSNMMTIPM-----SNNGTSWSHVECLELLNLFNTGKSS 1137
+ ++F A +I++ + + N S E +L+ F G+ +
Sbjct: 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421
Query: 1138 LVIMTLSDFIGNDFTNVEQVIIYNLPLSINHYV 1170
+++ T G D V+ V+ Y S +
Sbjct: 422 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSI 454
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 32.5 bits (75), Expect = 1.4
Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 39/161 (24%)
Query: 1046 DPIMKLVKPS--SVHLVKQYLIRTPKSQK----IVNLLSFLEGKRSLIFVKTYRDASRII 1099
+P+ LVK ++ +KQ+ + + + + +L + +++IF T R +
Sbjct: 217 NPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELT 276
Query: 1100 SAVQDSNMMTIPMSNNGTSWSHVECL----------ELLNLFNTGKSSLVIMTLSDFI-- 1147
+ + N+ + V + ++ F +G S ++I T D +
Sbjct: 277 TK----------LRNDKFT---VSAIYSDLPQQERDTIMKEFRSGSSRILIST--DLLAR 321
Query: 1148 GNDFTNVEQVIIYNLPLSINHYVFQI-----AGHK-EAIAF 1182
G D V VI Y+LP + +Y+ +I G K AI F
Sbjct: 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 31.4 bits (72), Expect = 2.8
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 44/119 (36%)
Query: 316 MGGLYGKRVTQVSAGH-------SHSAAVTEDGLLYTWGEGDH-----------GRLGHG 357
+G YG + + +G A+ +GL GD +G
Sbjct: 13 LGLYYGALLQR--SGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPM 70
Query: 358 DL-----KSRHTPTLVTELSDVGAVSCGESHTLVLS-QDGHTVWSMGSGNLGKLGHEDT 410
DL K+ + + E T +L+ Q+G LG+E+
Sbjct: 71 DLVLVGLKTFANSRYEELIRPL----VEE-GTQILTLQNG-------------LGNEEA 111
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 31.0 bits (71), Expect = 3.8
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 1715 DLPRDYSQQLLRA----SVQG--HRLVSQ--QQLWDFNPLDASSSQTRRSRLV 1759
+L + + +LLR + G +RL+ Q Q+L+ + + S +V
Sbjct: 246 NLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMV 298
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 27,367,132
Number of extensions: 1649953
Number of successful extensions: 3476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3073
Number of HSP's successfully gapped: 91
Length of query: 1858
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1750
Effective length of database: 3,686,325
Effective search space: 6451068750
Effective search space used: 6451068750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.8 bits)