RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15269
(1858 letters)
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 137 bits (344), Expect = 6e-35
Identities = 81/403 (20%), Positives = 141/403 (34%), Gaps = 42/403 (10%)
Query: 183 ISVAHS-------KVYTWGCNLHHQI-LDEVRGKCSRPRLQSLPSNIRHIEAGQFCTFLL 234
+ V+H V T G Q+ L E + +P L S+P ++ EAG T L
Sbjct: 3 VKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCL 62
Query: 235 DSTGGLLVYGKGWLG-LANTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSW 293
+G + +G G L T + VP + + V + ++
Sbjct: 63 SKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFL 122
Query: 294 GVGEHGKLGH-GNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHG 352
G G ++ + + V +V++G+ H +T DG LYT G G+ G
Sbjct: 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQG 182
Query: 353 RLGHGDLKSRHTPTLVT------------------ELSDVGAVSCGESHTLVLSQDGHTV 394
+LG + CG T +S +G V
Sbjct: 183 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG-HV 241
Query: 395 WSMGSGNLGKLGHEDTGKVTTPKVIEALRKFR--VRKVCAGTSFSVALTWDGLVFWWGL- 451
+ G N +LG T P+ + + + G +V + +G + G
Sbjct: 242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRA 301
Query: 452 -----GLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ 506
GL + P L++ L + + V+ G S A+++ V+AWG T Q G
Sbjct: 302 EYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGT 359
Query: 507 DNFSNPVDQPSKVVG--LEDVCVRQICAGSLFSIAYTVPPSNS 547
+ P +++G LE+ V + +G ++ S
Sbjct: 360 GQDED-AWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQS 401
Score = 112 bits (280), Expect = 1e-26
Identities = 60/345 (17%), Positives = 99/345 (28%), Gaps = 83/345 (24%)
Query: 275 KCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQR-RPKLIMGGLYGKRVTQVSAGHSH 333
K +H T G V + G G+ G+LG G + +R +P L+ + V Q AG H
Sbjct: 2 KVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP---EDVVQAEAGGMH 58
Query: 334 SAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSC-------------- 379
+ +++ G +Y++G D G LG V
Sbjct: 59 TVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDG 118
Query: 380 --------------------------------GESHTLVLSQDGHTVWSMGSGNL----- 402
V S + H V G+L
Sbjct: 119 RVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGC 178
Query: 403 ---GKLGHEDTGKVTTP----------------KVIEALRKFRVRKVCAGTSFSVALTWD 443
G+LG K + R + G F+ A++ +
Sbjct: 179 GEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE 238
Query: 444 GLVFWWGLGLRSSSISFHTPVLVTGLSSH-------QIVDVSIGDSHVLALSQYNEVYAW 496
G V+ +GL + T + V S G H + + + Y+
Sbjct: 239 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 298
Query: 497 GSNTMGQCGQDNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
G G+ G + P+ + L V + G+ A T
Sbjct: 299 GRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVT 341
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 69.4 bits (169), Expect = 2e-13
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 22/170 (12%)
Query: 1425 ECGGQSLIHGPGTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDYNH 1482
E + P + +G+T+G + W+ +G +GV ++
Sbjct: 39 EDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTH-AVVGVCTADAPLHSV 97
Query: 1483 R------TTGDMWLYRAYSGNVYHSGEQTT---------MLPSFTQGDYITVVLDMDAQT 1527
+T W + +YH + +F D V LDMD T
Sbjct: 98 GYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGT 157
Query: 1528 LSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKITDMTVCETP 1577
LSF + + +AF+ L LYPIV S ++ + + +
Sbjct: 158 LSFIVDQQYLGIAFRGL-RGKKLYPIV---SAVWGHCEITMRYIGGLDPE 203
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein
2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 68.0 bits (165), Expect = 6e-13
Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 21/162 (12%)
Query: 1423 TVECGGQSLIHGPGTRGYGV--ANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIRDY 1480
V+ GG P + G +RG + W+ + +GV
Sbjct: 47 DVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEI-SWPLEQRGTHAVVGVATALAPLQ 105
Query: 1481 NHRTTGDM--------------WLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQ 1526
+ LY G + + VVLDM+
Sbjct: 106 ADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEG 165
Query: 1527 TLSFGKNGEEPHLAFQDLDTSAPLYPIVLFYSTNANGEKVKI 1568
TL + G AF+ L LYP V S +V+I
Sbjct: 166 TLGYSIGGTYLGPAFRGLKGR-TLYPSV---SAVWGQCQVRI 203
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 66.7 bits (161), Expect = 4e-12
Identities = 51/276 (18%), Positives = 85/276 (30%), Gaps = 19/276 (6%)
Query: 252 NTTIQPLPKRVPLEAAIVSLSVSKCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRR 311
N ++ + +++ H L + G+V WG +G+L
Sbjct: 12 NNDWGEATVPAEAQSGVDAIA---GGYFHGLALKG-GKVLGWGANLNGQLTMPAATQSGV 67
Query: 312 PKLIMGG---LYGKRVTQVSAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLV 368
+ G L K ++ G + T + +
Sbjct: 68 DAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAW 127
Query: 369 TELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVR 428
+ SD E+ + V + DG ++ N G + D T EA
Sbjct: 128 GDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDD- 186
Query: 429 KVCAGTSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALS 488
AG F DG V WG + T V LS + ++ G+ + LAL
Sbjct: 187 --VAGGIFHSLALKDGKVIAWG-----DNRYKQTTVPTEALSG--VSAIASGEWYSLALK 237
Query: 489 QYNEVYAWGSNTMGQCG-QDNFSNPVDQPSKVVGLE 523
+V AWGS+ Q S+ P+ L+
Sbjct: 238 N-GKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALK 272
Score = 62.1 bits (149), Expect = 1e-10
Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 58/275 (21%)
Query: 286 SEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQVSAGHSHSAAVTEDGLLYT 345
+ V +WG G ++ V ++ G+ H A+ G +
Sbjct: 2 AATSVVAWGGNNDW--GEATVPAEA----------QSGVDAIAGGYFHGLALK-GGKVLG 48
Query: 346 WGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLVLSQDGHTVWSMGSGNLGKL 405
WG +G+L A++ G H+L V + G G+
Sbjct: 49 WGANLNGQLTMPAATQSGVD----------AIAAGNYHSLA--LKDGEVIAWGGNEDGQT 96
Query: 406 GHEDTGKVTTPKVIEALRKFRVRKVCA---------GTSFSVALTWDGLVFWWGL----- 451
+ + K G + A G+ G
Sbjct: 97 TVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTAL 156
Query: 452 -----GLRSSSISFHTPVLVTGLSSHQIVDVSIGDSHVLALSQYNEVYAWGSNTMGQCGQ 506
G+ + ++ V + + DV+ G H LAL + +V AWG N Q
Sbjct: 157 AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV 215
Query: 507 DNFSNPVDQPSKVVGLEDVCVRQICAGSLFSIAYT 541
P + S V I +G +S+A
Sbjct: 216 -----PTEALSGVS--------AIASGEWYSLALK 237
Score = 56.3 bits (134), Expect = 9e-09
Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 33/279 (11%)
Query: 161 NSNTDIDSTSTPKLTYNIGDTDISVAHS------KVYTWGCNLHHQILDEVRGKCSRPRL 214
+N ++T + + H KV WG NL+ Q+ ++ +
Sbjct: 11 GNNDWGEATVPAEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQL---TMPAATQSGV 67
Query: 215 QSLPSNIRHIEAGQFCTFLLDSTGGLLVYGKGWLGLANTTIQPLPKRVPLEAAIVSLSVS 274
++ + H A + + GG A + + + A+ V
Sbjct: 68 DAIAAGNYHSLALKDGEV--IAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVI 125
Query: 275 KCSEAHVLTVTSEGEVYSWGVGEHGKLGHGNTLSQRRPKLIMGGLYGKRVTQV------- 327
+ T E S G + + +G+
Sbjct: 126 AWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVD 185
Query: 328 -SAGHSHSAAVTEDGLLYTWGEGDHGRLGHGDLKSRHTPTLVTELSDVGAVSCGESHTLV 386
AG + +DG + WG+ + + LS V A++ GE ++L
Sbjct: 186 DVAGGIFHSLALKDGKVIAWGDNRYKQTTVP----------TEALSGVSAIASGEWYSLA 235
Query: 387 LSQDGHTVWSMGSGNLGKLG--HEDTGKVTTPKVIEALR 423
L +G V + GS + P AL+
Sbjct: 236 LK-NG-KVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALK 272
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 45.0 bits (106), Expect = 2e-05
Identities = 22/161 (13%), Positives = 51/161 (31%), Gaps = 15/161 (9%)
Query: 1423 TVECGG--QSLIHGPGTRGYGVANIG---ITRGCYQWKFLIVNEHKGNEGTCIGVTRWPI 1477
+ G Q+ + +G T G + W+ + ++ +GV + +
Sbjct: 31 SFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEV----DVGTSQVWDVGVCKESV 86
Query: 1478 R---DYNHRTTGDMWLYRAYSGNVY-HSGEQTTMLPSFTQGDYITVVLDMDAQTLSFGKN 1533
+ G V+ S T L Q + + LD+ ++++F
Sbjct: 87 NRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVSPQLHRVGIFLDVGMRSIAFYNV 146
Query: 1534 GEEPHL-AFQDLDTSAPLYPI-VLFYSTNANGEKVKITDMT 1572
+ H+ F ++ P P + + + I +
Sbjct: 147 SDGCHIYTFIEIPVCEPWRPFFAHKRGSQDDQSILSICSVI 187
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 39.6 bits (92), Expect = 0.001
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 1442 VANIGITRGCYQWKFLIVNEHKGNEGTCIGVTRWPIR---DYNHRTTGDMWLYRAYSGNV 1498
+ G + W+ + G E +GV R +R + + W ++
Sbjct: 46 LGAQHFHSGKHYWEV----DVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQK 101
Query: 1499 YHSGE-QTTMLPSFTQGDYITVVLDMDAQTLSFGKNGEEPHL--AFQDLDTSAPLYPIVL 1555
Y +G T L + + LD +A +SF + L +F + + PL P
Sbjct: 102 YEAGTYPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRP--- 158
Query: 1556 FYSTNANGEKVKITDMTVC 1574
F+S N +T+C
Sbjct: 159 FFSPGFNDGGKNTAPLTLC 177
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C
virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 40.3 bits (94), Expect = 0.001
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 16/140 (11%)
Query: 1060 VKQYLIRTPKSQKIVNLLSFLE---GKRSLIFVKTYRDASRIISAVQDSNMMTIPMSNNG 1116
+++ + T LE G R LIF + + + + + + +
Sbjct: 11 IEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 70
Query: 1117 TS-------WSHVECLELLNLFNTGKSSLVIMT---LSDFIGNDFTNVEQVIIYNLPLSI 1166
V + L TG VI ++ + + LP
Sbjct: 71 DVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDA 130
Query: 1167 NHYVFQI--AG-HKEAIAFY 1183
+ G K I +
Sbjct: 131 VSRTQRRGRTGRGKPGIYRF 150
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283
{Lactobacillus casei [TaxId: 1582]}
Length = 121
Score = 31.8 bits (72), Expect = 0.27
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 1140 IMTLSDFIGNDFTNVEQVIIYNLPLSINH--YVFQIAGHKEAIAFY 1183
+ +L + F ++ +N P+ +H ++ K+ +A
Sbjct: 19 VESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVA 64
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 29.9 bits (66), Expect = 2.7
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 1470 IGVTRWPIRDYNHRTTGDMWLYRAYSGNVYHSGEQTTMLPSFTQGDYITVVLDMDAQTLS 1529
IG+ R+ + G ++ +Y + +G + + ++ L
Sbjct: 6 IGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILF 65
Query: 1530 FG 1531
G
Sbjct: 66 PG 67
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 29.6 bits (65), Expect = 3.3
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 374 VGAVSCGESHTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAG 433
+G + G ++ D + T V ++I+ ++
Sbjct: 11 LGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVV---EIIDNTTLDHAGEIVIP 67
Query: 434 TSFSVALTWDGLVFWWGLGLRSSSISFHTPVLVTGLSSHQIVDVSIGDSH 483
+ + + G R + VT + + +S D+
Sbjct: 68 AKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTA 117
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza
sativa) [TaxId: 4530]}
Length = 73
Score = 27.4 bits (61), Expect = 3.3
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 14/72 (19%)
Query: 1652 LEEAQMELLCREVWPALVVMGGGD-------DG---LRMGGKCVEKPSGRVGTLLGTLKE 1701
L E +E + E+ P L GGG +R+ G + R+ + L+E
Sbjct: 3 LNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIA-VSKKLRE 61
Query: 1702 ---GIAKVKDLN 1710
I V+ L+
Sbjct: 62 KIPSIQIVQLLS 73
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease
virus [TaxId: 11976]}
Length = 497
Score = 29.2 bits (65), Expect = 5.2
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 1193 SSLIKLLEYSNKHVPTHPHANGNTLLREVSSNMIHILAIACANHIEDLNESVRSKLTSCL 1252
SS+++ LE+S L +E + L +A A H ++ V +L
Sbjct: 416 SSILRQLEWSKTTSRHMVIEETYDLAKEERGVQLEELQVAAAAHGQEFFNFVCRELERQQ 475
Query: 1253 HVYLETLLPPSDT 1265
Y + + D
Sbjct: 476 -AYTQFSVYSYDA 487
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 29.0 bits (65), Expect = 5.5
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 1785 SPLPKFEELSLDSEYCTMCESVVPTNNSGDLRSHYEEVHP 1824
+ K E+ L+SE+ T VP + D YE +
Sbjct: 172 HDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSK 211
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 29.0 bits (64), Expect = 5.8
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 383 HTLVLSQDGHTVWSMGSGNLGKLGHEDTGKVTTPKVIEALRKFRVRKVCAGTSFSVALTW 442
H LS G ++ +G + + TT I ++ S W
Sbjct: 65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI------KIGSEARSIETSKMEGW 118
Query: 443 DG 444
+
Sbjct: 119 ED 120
>d3cdda1 b.106.1.1 (A:181-348) Baseplate protein gpP {Shewanella
oneidensis [TaxId: 70863]}
Length = 168
Score = 27.5 bits (61), Expect = 9.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 1723 QLLRASVQGHRLVSQQQLWDFN 1744
+ +V G R+ +LW+ N
Sbjct: 99 NMAEYTVTGWRIPQTGKLWNIN 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.397
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,607,843
Number of extensions: 306491
Number of successful extensions: 744
Number of sequences better than 10.0: 1
Number of HSP's gapped: 701
Number of HSP's successfully gapped: 26
Length of query: 1858
Length of database: 2,407,596
Length adjustment: 99
Effective length of query: 1759
Effective length of database: 1,048,326
Effective search space: 1844005434
Effective search space used: 1844005434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)