BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15270
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN-- 471
+A G HSA VT+ G LYT+G G YGRLGH + + P+ V AL V ++CG
Sbjct: 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA 223
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNT 499
T+C+ D V+++GDG+YGKLG G +
Sbjct: 224 QTLCLTDD-DTVWSWGDGDYGKLGRGGS 250
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 396 GQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERV 455
G VP+ + + CG + S +T +G +YT+G GDY RLGHG+ + + P +V
Sbjct: 252 GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311
Query: 456 VALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
L V +++ G H VC + G+ VY +GD + G+LG G T P+
Sbjct: 312 QGLQGKKVIAIATGSLHCVCCTEDGE-VYTWGDNDEGQLGDGTTNAIQRPR 361
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
R + + ++ I+ G+ H + + G+V+ WG+N + QLG G + P+LV AL
Sbjct: 309 RQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368
Query: 67 KNIRQVSAGRSHSAAWT 83
K + +V+ G +H+ AW+
Sbjct: 369 KKVNRVACGSAHTLAWS 385
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 414 IACGF--KHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
IACG + +T + ++++G+GDYG+LG G + KVP ++ +L + V V CG
Sbjct: 216 IACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ 275
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGN 498
+V + G AVY +G G+Y +LG G+
Sbjct: 276 FSVALTKSG-AVYTWGKGDYHRLGHGS 301
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 411 EAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGL 470
+ A+ G KH ++S G +Y++G + G+LGHG P + +L + V V+ G
Sbjct: 109 KVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG 168
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLG 495
H+ C+ G +Y +G G YG+LG
Sbjct: 169 AHSACVTAAGD-LYTWGKGRYGRLG 192
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 15 IHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSA 74
I V ++ G +H LA+S+ G+V++WG D +LG GN+ P+++ +L + V+A
Sbjct: 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA 166
Query: 75 GRSHSAAWTA 84
G +HSA TA
Sbjct: 167 GGAHSACVTA 176
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
AIA G H T +G +YT+G+ D G+LG GTT + P V AL V V+CG H
Sbjct: 321 AIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAH 380
Query: 473 TV 474
T+
Sbjct: 381 TL 382
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
R I + + I +VD++ G H V+ G ++ WG +LG + + +P+LV AL
Sbjct: 151 RVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210
Query: 67 KNIRQVSAG 75
+ ++ G
Sbjct: 211 HRVVDIACG 219
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
I + + +V + G++ +A++ +G V+ WG +LG G+ + R P+ V L K
Sbjct: 259 IDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318
Query: 69 IRQVSAGRSHSAAWT 83
+ ++ G H T
Sbjct: 319 VIAIATGSLHCVCCT 333
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 9 IPAFKNIHIVDISVGT--EHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ A + +VDI+ G+ L +++ V++WG+ +LG G + P + +L+
Sbjct: 205 VEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG 264
Query: 67 KNIRQVSAGRSHSAAWT 83
+ +V G S A T
Sbjct: 265 LGVVKVECGSQFSVALT 281
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 423 VVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVE--SVSCGLNHTVCIADKG 480
VT++G LY G G GRLG G T + P + ++ V ++ +V+ G H + ++ +G
Sbjct: 67 AVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 481 KAVYAFGDGEYGKLGLGN 498
+ VY++G+ E GKLG GN
Sbjct: 127 E-VYSWGEAEDGKLGHGN 143
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+ +ACG++H+ V+ +G LYT+G YG+LGHG + +P ++ AL+ + +S G
Sbjct: 216 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFR 275
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
HT+ + GK +Y +G ++G++G+GN + +P
Sbjct: 276 HTMALTSDGK-LYGWGWNKFGQVGVGNNLDQCSP 308
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
I+ G HS + S + ++G G+ G+LGHG + P ++ AL+ + SV+CG +HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
V + G VY++G G++G+LG GN+ TP
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 100
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 405 NRLQYYEA----AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNK 460
++Q +E +A G +H+A VT +G LY +G G YG LG G + VPERV +
Sbjct: 153 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 212
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGN 498
+ V+CG HT+ ++ G A+Y +G +YG+LG G+
Sbjct: 213 EKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGD 249
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 413 AIACGFKHSAVVTSNGY-LYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
++ CG H+ + +G +Y++G GD+GRLGHG + + P + AL+ + ++ ++CG +
Sbjct: 60 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 119
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H + + +G+ V ++G + G+LGLG+T PQ
Sbjct: 120 HCLAVTMEGE-VQSWGRNQNGQLGLGDTEDSLVPQ 153
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
IACG H VT G + ++G G+LG G T + VP+++ A + ++ V+ G HT
Sbjct: 114 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + G +Y +G G YG LGLG+ + P+
Sbjct: 174 AAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPE 205
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
I A I I I+ G H LAV+ G+V +WG N + QLGLG+ + PQ + A
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 162
Query: 69 IRQVSAGRSHSAA 81
I+ V+AG H+AA
Sbjct: 163 IKMVAAGAEHTAA 175
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 399 VPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL 458
+P + + I+ GF+H+ +TS+G LY +G +G++G G ++ P +V
Sbjct: 255 IPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 314
Query: 459 NKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+ V VSCG HT+ + ++ V+A+G G G+LG+G +
Sbjct: 315 DDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGES 354
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+ A N I IS G H +A+++ G+++ WG N Q+G+GN ++ P V ++
Sbjct: 259 LEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK 318
Query: 69 IRQVSAGRSHSAA 81
+ QVS G H+ A
Sbjct: 319 VVQVSCGWRHTLA 331
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALS 65
+V +S G H LAV+ VFAWG ++ QLG+G ++ P+++ ALS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ I AF+ I I ++ G EH AV+ G ++ WG LGLG++ + P+ V +
Sbjct: 153 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 212
Query: 67 KNIRQVSAGRSHS 79
+ + V+ G H+
Sbjct: 213 EKMSMVACGWRHT 225
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 8 HIPAFKNIHIVDISVGTEHVLAVSNTG-QVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ A IV ++ G +H +A S +G +V++WG +LG GN + P + AL
Sbjct: 49 QLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHG 108
Query: 67 KNIRQVSAGRSHSAA 81
I+Q++ G SH A
Sbjct: 109 IRIKQIACGDSHCLA 123
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 20 ISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHS 79
++ G H ++VS +G ++ +G + QLG G+ ++ P + ALSN I Q+S G H+
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHT 277
Query: 80 AAWTA 84
A T+
Sbjct: 278 MALTS 282
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
++ IS G H +A+ + V +WG D QLG G+ + P + AL I V+ G
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 77 SHSAAWT 83
H+ A++
Sbjct: 66 DHTVAYS 72
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALN 459
++CG++H+ VT ++ +G G G+LG G +++ P+ + AL+
Sbjct: 322 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
+ACG++H+ V+ +G LYT+G YG+LGHG + +P ++ AL+ + +S G HT
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 289
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
+ + GK +Y +G ++G++G+GN + +P
Sbjct: 290 MALTSDGK-LYGWGWNKFGQVGVGNNLDQCSP 320
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
I+ G HS + S + ++G G+ G+LGHG + P ++ AL+ + SV+CG +HT
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
V + G VY++G G++G+LG GN+ TP
Sbjct: 81 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 112
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 405 NRLQYYEA----AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNK 460
++Q +E +A G +H+A VT +G LY +G G YG LG G + VPERV +
Sbjct: 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 224
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGN 498
+ V+CG HT+ ++ G A+Y +G +YG+LG G+
Sbjct: 225 EKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGD 261
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 413 AIACGFKHSAVVTSNGY-LYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
++ CG H+ + +G +Y++G GD+GRLGHG + + P + AL+ + ++ ++CG +
Sbjct: 72 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 131
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H + + +G+ V ++G + G+LGLG+T PQ
Sbjct: 132 HCLAVTMEGE-VQSWGRNQNGQLGLGDTEDSLVPQ 165
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
IACG H VT G + ++G G+LG G T + VP+++ A + ++ V+ G HT
Sbjct: 126 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 185
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + G +Y +G G YG LGLG+ + P+
Sbjct: 186 AAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPE 217
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
I A I I I+ G H LAV+ G+V +WG N + QLGLG+ + PQ + A
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 174
Query: 69 IRQVSAGRSHSAA 81
I+ V+AG H+AA
Sbjct: 175 IKMVAAGAEHTAA 187
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 399 VPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL 458
+P + + I+ G++H+ +TS+G LY +G +G++G G ++ P +V
Sbjct: 267 IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326
Query: 459 NKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+ V VSCG HT+ + ++ V+A+G G G+LG+G +
Sbjct: 327 DDQKVVQVSCGWRHTLAVTERNN-VFAWGRGTNGQLGIGES 366
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+ A N I IS G H +A+++ G+++ WG N Q+G+GN ++ P V ++
Sbjct: 271 LEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK 330
Query: 69 IRQVSAGRSHSAA 81
+ QVS G H+ A
Sbjct: 331 VVQVSCGWRHTLA 343
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALS 65
+V +S G H LAV+ VFAWG ++ QLG+G ++ P+++ ALS
Sbjct: 331 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ I AF+ I I ++ G EH AV+ G ++ WG LGLG++ + P+ V +
Sbjct: 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 224
Query: 67 KNIRQVSAGRSHS 79
+ + V+ G H+
Sbjct: 225 EKMSMVACGWRHT 237
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 8 HIPAFKNIHIVDISVGTEHVLAVSNTG-QVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ A IV ++ G +H +A S +G +V++WG +LG GN + P + AL
Sbjct: 61 QLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHG 120
Query: 67 KNIRQVSAGRSHSAA 81
I+Q++ G SH A
Sbjct: 121 IRIKQIACGDSHCLA 135
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 20 ISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHS 79
++ G H ++VS +G ++ +G + QLG G+ ++ P + ALSN I Q+S G H+
Sbjct: 230 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 289
Query: 80 AAWTA 84
A T+
Sbjct: 290 MALTS 294
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 20 ISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHS 79
IS G H +A+ + V +WG D QLG G+ + P + AL I V+ G H+
Sbjct: 21 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 80
Query: 80 AAWT 83
A++
Sbjct: 81 VAYS 84
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL-----NKVHVES 465
++CG++H+ VT ++ +G G G+LG G +++ P+ + AL + H+ES
Sbjct: 334 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGASGQHIES 390
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
+ACG++H+ V+ +G LYT+G YG+LGHG + +P ++ AL+ + +S G HT
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 277
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
+ + GK +Y +G ++G++G+GN + +P
Sbjct: 278 MALTSDGK-LYGWGWNKFGQVGVGNNLDQCSP 308
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
I+ G HS + S + ++G G+ G+LGHG + P ++ AL+ + SV+CG +HT
Sbjct: 9 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 68
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
V + G VY++G G++G+LG GN+ TP
Sbjct: 69 VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 100
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 405 NRLQYYEA----AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNK 460
++Q +E +A G +H+A VT +G LY +G G YG LG G + VPERV +
Sbjct: 153 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 212
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGN 498
+ V+CG HT+ ++ G A+Y +G +YG+LG G+
Sbjct: 213 EKMSMVACGWRHTISVSYSG-ALYTYGWSKYGQLGHGD 249
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 413 AIACGFKHSAVVTSNGY-LYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
++ CG H+ + +G +Y++G GD+GRLGHG + + P + AL+ + ++ ++CG +
Sbjct: 60 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 119
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H + + +G+ V ++G + G+LGLG+T PQ
Sbjct: 120 HCLAVTMEGE-VQSWGRNQNGQLGLGDTEDSLVPQ 153
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
IACG H VT G + ++G G+LG G T + VP+++ A + ++ V+ G HT
Sbjct: 114 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHT 173
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + G +Y +G G YG LGLG+ + P+
Sbjct: 174 AAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPE 205
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
I A I I I+ G H LAV+ G+V +WG N + QLGLG+ + PQ + A
Sbjct: 103 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 162
Query: 69 IRQVSAGRSHSAA 81
I+ V+AG H+AA
Sbjct: 163 IKMVAAGAEHTAA 175
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 399 VPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL 458
+P + + I+ G++H+ +TS+G LY +G +G++G G ++ P +V
Sbjct: 255 IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 314
Query: 459 NKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+ V VSCG HT+ + ++ V+A+G G G+LG+G +
Sbjct: 315 DDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGES 354
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+ A N I IS G H +A+++ G+++ WG N Q+G+GN ++ P V ++
Sbjct: 259 LEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK 318
Query: 69 IRQVSAGRSHSAA 81
+ QVS G H+ A
Sbjct: 319 VVQVSCGWRHTLA 331
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALS 65
+V +S G H LAV+ VFAWG ++ QLG+G ++ P+++ ALS
Sbjct: 319 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ I AF+ I I ++ G EH AV+ G ++ WG LGLG++ + P+ V +
Sbjct: 153 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 212
Query: 67 KNIRQVSAGRSHS 79
+ + V+ G H+
Sbjct: 213 EKMSMVACGWRHT 225
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 8 HIPAFKNIHIVDISVGTEHVLAVSNTG-QVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ A IV ++ G +H +A S +G +V++WG +LG GN + P + AL
Sbjct: 49 QLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHG 108
Query: 67 KNIRQVSAGRSHSAA 81
I+Q++ G SH A
Sbjct: 109 IRIKQIACGDSHCLA 123
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 20 ISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHS 79
++ G H ++VS +G ++ +G + QLG G+ ++ P + ALSN I Q+S G H+
Sbjct: 218 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHT 277
Query: 80 AAWTA 84
A T+
Sbjct: 278 MALTS 282
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
++ IS G H +A+ + V +WG D QLG G+ + P + AL I V+ G
Sbjct: 6 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 65
Query: 77 SHSAAWT 83
H+ A++
Sbjct: 66 DHTVAYS 72
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALN 459
++CG++H+ VT ++ +G G G+LG G +++ P+ + AL+
Sbjct: 322 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 367
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Query: 345 EDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWT-GRITPIVTGGQS---VP 400
+ D+L Q ++A I + V E + W GR + G ++ VP
Sbjct: 147 DTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVP 206
Query: 401 LTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNK 460
+ + +ACG++H+ V+ +G LYT+G YG+LGHG + +P ++ AL+
Sbjct: 207 ERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN 266
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
+ +S G HT + GK +Y +G ++G++G+GN + +P
Sbjct: 267 SFISQISGGARHTXALTSDGK-LYGWGWNKFGQVGVGNNLDQCSP 310
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
I+ G HS + S + ++G G+ G+LGHG + P ++ AL+ + SV+CG +HT
Sbjct: 11 ISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHT 70
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
V + G VY++G G++G+LG GN+ TP
Sbjct: 71 VAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTP 102
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 413 AIACGFKHSAVVTSNGY-LYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
++ CG H+ + +G +Y++G GD+GRLGHG + + P + AL+ + ++ ++CG +
Sbjct: 62 SVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 121
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H + + +G+ V ++G + G+LGLG+T PQ
Sbjct: 122 HCLAVTXEGE-VQSWGRNQNGQLGLGDTEDSLVPQ 155
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
IACG H VT G + ++G G+LG G T + VP+++ A + ++ V+ G HT
Sbjct: 116 IACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHT 175
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + G +Y +G G YG LGLG+ + P+
Sbjct: 176 AAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPE 207
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
I A I I I+ G H LAV+ G+V +WG N + QLGLG+ + PQ + A
Sbjct: 105 IKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR 164
Query: 69 IRQVSAGRSHSAA 81
I+ V+AG H+AA
Sbjct: 165 IKXVAAGAEHTAA 177
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 399 VPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL 458
+P + + I+ G +H+ +TS+G LY +G +G++G G ++ P +V
Sbjct: 257 IPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 316
Query: 459 NKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+ V VSCG HT+ + ++ V+A+G G G+LG+G +
Sbjct: 317 DDQKVVQVSCGWRHTLAVTER-NNVFAWGRGTNGQLGIGES 356
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+ A N I IS G H A+++ G+++ WG N Q+G+GN ++ P V ++
Sbjct: 261 LEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK 320
Query: 69 IRQVSAGRSHSAA 81
+ QVS G H+ A
Sbjct: 321 VVQVSCGWRHTLA 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALS 65
+V +S G H LAV+ VFAWG ++ QLG+G ++ P+++ ALS
Sbjct: 321 VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ I AF+ I I ++ G EH AV+ G ++ WG LGLG++ + P+ V +
Sbjct: 155 QKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 214
Query: 67 KNIRQVSAGRSHS 79
+ V+ G H+
Sbjct: 215 EKXSXVACGWRHT 227
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 8 HIPAFKNIHIVDISVGTEHVLAVSNTG-QVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ A IV ++ G +H +A S +G +V++WG +LG GN + P + AL
Sbjct: 51 QLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHG 110
Query: 67 KNIRQVSAGRSHSAA 81
I+Q++ G SH A
Sbjct: 111 IRIKQIACGDSHCLA 125
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 20 ISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHS 79
++ G H ++VS +G ++ +G + QLG G+ ++ P + ALSN I Q+S G H+
Sbjct: 220 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHT 279
Query: 80 AAWTA 84
A T+
Sbjct: 280 XALTS 284
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
++ IS G H +A+ + V +WG D QLG G+ + P + AL I V+ G
Sbjct: 8 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 67
Query: 77 SHSAAWT 83
H+ A++
Sbjct: 68 DHTVAYS 74
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALN 459
++CG++H+ VT ++ +G G G+LG G +++ P+ + AL+
Sbjct: 324 VSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 369
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 416 CGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESV--SCGLNHT 473
CG + ++ G++Y FG +Y +LG T + +P+ + + V S G +HT
Sbjct: 239 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGN 498
VC+ +GKA Y+ G EYG+LGLG
Sbjct: 299 VCMDSEGKA-YSLGRAEYGRLGLGE 322
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 420 HSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADK 479
H + T G + T G GD G+LG G + + +V++ + V++ + G+ HTVC++
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKS 77
Query: 480 GKAVYAFGDGEYGKLG 495
G+ VY+FG + G LG
Sbjct: 78 GQ-VYSFGCNDEGALG 92
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 7 RHIPAFKNI--HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLAL 64
R PA +I +V G H + +S +GQV+++G N + LG + E
Sbjct: 49 RKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE 108
Query: 65 SNKNIRQVSAGRSHSAAWT 83
+ + QVSAG SH+AA T
Sbjct: 109 LQEKVVQVSAGDSHTAALT 127
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 402 TFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWK-VPERVVALNK 460
+F N + + + G H+ + S G Y+ G +YGRLG G K +P + L
Sbjct: 280 SFKNSTKSW-VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA 338
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGN 498
V SV+CG + + G+ V+A+G G +LG G
Sbjct: 339 --VSSVACGASVGYAVTKDGR-VFAWGMGTNYQLGTGQ 373
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 417 GFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWK--VPERVVALNKVHVESVSCGLNHTV 474
G H+ ++ +G +Y+FG D G LG T++ VP +V KV VS G +HT
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKV--VQVSAGDSHTA 124
Query: 475 CIADKGK 481
+ D G+
Sbjct: 125 ALTDDGR 131
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLA--LSNKNIRQVSA 74
+ ++ G AV+ G+VFAWG ++ QLG G + P ++ L N+ + VS+
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 398
Query: 75 GRSHS 79
G H+
Sbjct: 399 GGQHT 403
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLG--------HGTTMNWK---VPERVVALNK-- 460
+A G H ++T++G LYT G G+ G+LG G + VP+ V+ ++
Sbjct: 169 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGS 228
Query: 461 ---VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
V + CG T I+ +G VY FG Y +LG T PQ
Sbjct: 229 RGHVRFQDAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIPQ 276
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 397 QSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVV 456
+S+P T +RL +++ACG VT +G ++ +G G +LG G + P ++
Sbjct: 327 KSIP-TLISRLPAV-SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 384
Query: 457 A--LNKVHVESVSCGLNHTVCI 476
L V SVS G HTV +
Sbjct: 385 GKQLENRVVLSVSSGGQHTVLL 406
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSD 44
+V +S G H A+++ G+VF WG+ D
Sbjct: 113 VVQVSAGDSHTAALTDDGRVFLWGSFRD 140
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 416 CGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESV--SCGLNHT 473
CG + ++ G++Y FG +Y +LG T + +P+ + + V S G +HT
Sbjct: 228 CGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 287
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGN 498
VC+ +GKA Y+ G EYG+LGLG
Sbjct: 288 VCMDSEGKA-YSLGRAEYGRLGLGE 311
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 7 RHIPAFKNI--HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLAL 64
R PA +I +V G H + +S +GQV+++G N + LG + E
Sbjct: 38 RKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE 97
Query: 65 SNKNIRQVSAGRSHSAAWT 83
+ + QVSAG SH+AA T
Sbjct: 98 LQEKVVQVSAGDSHTAALT 116
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 420 HSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADK 479
H + T G + T G GD G+LG G + + +V++ + V++ + G+ HTVC++
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGM-HTVCLSKS 66
Query: 480 GKAVYAFGDGEYGKLG 495
G+ VY+FG + G LG
Sbjct: 67 GQ-VYSFGCNDEGALG 81
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 402 TFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWK-VPERVVALNK 460
+F N + + + G H+ + S G Y+ G +YGRLG G K +P + L
Sbjct: 269 SFKNSTKSW-VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA 327
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGN 498
V SV+CG + + G+ V+A+G G +LG G
Sbjct: 328 --VSSVACGASVGYAVTKDGR-VFAWGMGTNYQLGTGQ 362
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 417 GFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWK--VPERVVALNKVHVESVSCGLNHTV 474
G H+ ++ +G +Y+FG D G LG T++ VP +V KV VS G +HT
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKV--VQVSAGDSHTA 113
Query: 475 CIADKGK 481
+ D G+
Sbjct: 114 ALTDDGR 120
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLA--LSNKNIRQVSA 74
+ ++ G AV+ G+VFAWG ++ QLG G + P ++ L N+ + VS+
Sbjct: 328 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 387
Query: 75 GRSHS 79
G H+
Sbjct: 388 GGQHT 392
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLG--------HGTTMNWK---VPERVVALNK-- 460
+A G H ++T++G LYT G G+ G+LG G + VP+ V+ ++
Sbjct: 158 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGS 217
Query: 461 ---VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
V + CG T I+ +G VY FG Y +LG T PQ
Sbjct: 218 RGHVRFQDAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIPQ 265
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 397 QSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVV 456
+S+P T +RL +++ACG VT +G ++ +G G +LG G + P ++
Sbjct: 316 KSIP-TLISRLPAV-SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 373
Query: 457 A--LNKVHVESVSCGLNHTVCI 476
L V SVS G HTV +
Sbjct: 374 GKQLENRVVLSVSSGGQHTVLL 395
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSD 44
+V +S G H A+++ G+VF WG+ D
Sbjct: 102 VVQVSAGDSHTAALTDDGRVFLWGSFRD 129
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 220 RQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGV 279
R+++ +K +D L +R W ++ GE D GGV + + E+ + L +
Sbjct: 44 RRIMGVKRADF-LKARLW-IEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDN 101
Query: 280 ADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXXVWKLIVQEPV 339
N + + N D L +FKF+G + G+A+ K +K+++ +P+
Sbjct: 102 YTLQINPNSGLCNED------HLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPI 155
Query: 340 TFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSV 399
T D+E D+ Y SLR I + + TE + II E F G + + GG +
Sbjct: 156 TLHDMESVDSEYYNSLRWILE---NDPTELDLRFIIDEELF-GQTHQHELK---NGGSEI 208
Query: 400 PLTFANRLQYYEAAIACGF 418
+T N+ +Y I F
Sbjct: 209 VVTNKNKKEYIYLVIQWRF 227
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 214 IFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLV 273
IF + R+++ +K D+ L +R W ++ E D GGV + + E+ + L
Sbjct: 37 IFEESYRRIMSVKRPDV-LKARLW-IEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFE 94
Query: 274 RTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXXVWKL 333
+ N + + N D L +F F+G + G+A+ K +K+
Sbjct: 95 YSATDNYTLQINPNSGLCNED------HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKM 148
Query: 334 IVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIV 393
++ + +T D+E D+ Y SL+ I + + TE + I E F G ++ + P
Sbjct: 149 MLGKQITLNDMESVDSEYYNSLKWILE---NDPTELDLMFCIDEENF-GQTYQVDLKP-- 202
Query: 394 TGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTF 433
G + +T N+ +Y + I F + N +L F
Sbjct: 203 -NGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGF 241
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 214 IFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLV 273
IF + R+++ +K D+ L +R W ++ E D GGV + + E+ + L
Sbjct: 37 IFEESYRRIMSVKRPDV-LKARLW-IEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFE 94
Query: 274 RTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXXVWKL 333
+ N + + N D L +F F+G + G+A+ K +K+
Sbjct: 95 YSATDNYTLQINPNSGLCNED------HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKM 148
Query: 334 IVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIV 393
++ + +T D+E D+ Y SL+ I + + TE + I E F G ++ + P
Sbjct: 149 MLGKQITLNDMESVDSEYYNSLKWILE---NDPTELDLMFCIDEENF-GQTYQVDLKP-- 202
Query: 394 TGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTF 433
G + +T N+ +Y + I F + N +L F
Sbjct: 203 -NGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGF 241
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 212 KPIFAQISRQVVKMKGSDLRLPSRAWK---VKLLGEGADDAGGVFDDTITEMCGELLSGA 268
+ IF + RQV K + DL WK +K GE D GGV + + + E L+
Sbjct: 32 EEIFEESYRQVXKXRPKDL------WKRLXIKFRGEEGLDYGGVAREWLYLLSHEXLNPY 85
Query: 269 VPLLVRTPNGVADTGYNRDRYI---LNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXX 325
L Y+RD +NPD + + + L +F F+G + G A+
Sbjct: 86 YGLF----------QYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIXGXAVFHGHYIDGG 135
Query: 326 XXXXVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASW 385
+K ++ + +T D E D SL I + ++GV + F C E ++
Sbjct: 136 FTLPFYKQLLGKSITLDDXELVDPDLHNSLVWILENDITGVLDHTF-------CVEHNAY 188
Query: 386 TGRIT-PIVTGGQSVPLTFANRLQY 409
I + G+S+P+ N+ +Y
Sbjct: 189 GEIIQHELKPNGKSIPVNEENKKEY 213
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQL-VLALSNK 67
+P F +IV ++ G +H+L + G VFAWGN QLG +R L +
Sbjct: 198 VPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLR 257
Query: 68 NIRQVSAGRSHSAAWT 83
+++ +++G +H A T
Sbjct: 258 HVKYIASGENHCFALT 273
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 19/100 (19%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLG--------------HGTTMNWKVPERVVAL 458
+IA G HS +++ +G LY+ G D +G HG +P + L
Sbjct: 317 SIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTK---L 373
Query: 459 NKV-HVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLG 497
N V +SV+ G +H+V +A G A Y++G GE +GLG
Sbjct: 374 NNVPKFKSVAAGSHHSVAVAQNGIA-YSWGFGETYAVGLG 412
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 397 QSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPE--- 453
Q P +Y +A G H + G ++ +GNG +LG +++
Sbjct: 192 QKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDP 251
Query: 454 RVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGL 496
R L HV+ ++ G NH + K V ++G ++G+ G+
Sbjct: 252 RPFGLR--HVKYIASGENHCFALTKDNKLV-SWGLNQFGQCGV 291
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 360 DIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFK 419
D+ G+ + N PE ++ R P+ T +VP ++A G
Sbjct: 341 DMFEVGIPKDNLPEYT----YKDVHGKARAVPLPTKLNNVPKF---------KSVAAGSH 387
Query: 420 HSAVVTSNGYLYTFGNGDYGRLGHGT-TMNWKVPERV--VALNKVHVESVSCGLNHTV 474
HS V NG Y++G G+ +G G + +VP R+ A ++ V CG +V
Sbjct: 388 HSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSV 445
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 4 TSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLG 50
T ++P FK++ + G+ H +AV+ G ++WG +GLG
Sbjct: 371 TKLNNVPKFKSV-----AAGSHHSVAVAQNGIAYSWGFGETYAVGLG 412
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 15/220 (6%)
Query: 214 IFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLV 273
IF + R++ +K D+ L +R W ++ E D GGV + + E + L
Sbjct: 52 IFEESYRRIXSVKRPDV-LKARLW-IEFESEKGLDYGGVAREWFFLLSKEXFNPYYGLFE 109
Query: 274 RTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXXVWKL 333
+ N + + N D L +F F+G + G+A+ K +K
Sbjct: 110 YSATDNYTLQINPNSGLCNED------HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKX 163
Query: 334 IVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIV 393
+ + +T D E D+ Y SL+ I + + TE + I E F G ++ + P
Sbjct: 164 XLGKQITLNDXESVDSEYYNSLKWILE---NDPTELDLXFCIDEENF-GQTYQVDLKP-- 217
Query: 394 TGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTF 433
G + +T N+ +Y + I F + N +L F
Sbjct: 218 -NGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNAFLEGF 256
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 243 GEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSL 302
GE DAGG+ + + E+ + L +P +R Y +NP + L
Sbjct: 83 GEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG-------DRVTYTINPSSHANPNHL 135
Query: 303 MHFKFLGILFGVAIRTKKXXXXXXXXXVWKLIVQEPVTFTDLEDNDTLYAQSL 355
+FKF+G + A+ + +K I+ + V +TD+E D + Q L
Sbjct: 136 SYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 188
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 212 KPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPL 271
K IF +++++ DL+ + +K GE D GGV + + E+ + L
Sbjct: 82 KNIFEDAYQEIMRQTPEDLK---KRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCL 138
Query: 272 LVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXXVW 331
+ Y+ +NP+ + + L +FKF+G + G+ + ++ ++
Sbjct: 139 F-------EYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALY 191
Query: 332 KLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITP 391
K+++++ V D+E D SL + + + GV + F ++ R
Sbjct: 192 KMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGVLDLTF-----------SADDERFGE 240
Query: 392 IVT-----GGQSVPLTFANRLQYYE 411
+VT G+++ +T N+ +Y E
Sbjct: 241 VVTVDLKPDGRNIEVTDGNKKEYVE 265
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 243 GEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSL 302
GE DAGG+ + + E+ + L +P +R Y +NP + L
Sbjct: 66 GEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG-------DRVTYTINPSSHCNPNHL 118
Query: 303 MHFKFLGILFGVAIRTKKXXXXXXXXXVWKLIVQEPVTFTDLEDNDTLYAQSL 355
+FKF+G + A+ + +K I+ + V +TD+E D + Q L
Sbjct: 119 SYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGL 171
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 85/205 (41%), Gaps = 22/205 (10%)
Query: 207 SKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLS 266
S+QT +F +Q++ +K DLR R V GE D GG+ + + E+L+
Sbjct: 29 SRQT---LFEDSFQQIMALKPYDLR---RRLYVIFRGEEGLDYGGLAREWFFLLSHEVLN 82
Query: 267 GAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXX 326
L G N +NP + + L +F F+G +A+ K
Sbjct: 83 PMYCLF-------EYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGF 135
Query: 327 XXXVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWT 386
+K ++ + +T DLE DT + SL IRD + + E ++
Sbjct: 136 SLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRD---NNIEECGLEMYFSVD----MEIL 188
Query: 387 GRITP--IVTGGQSVPLTFANRLQY 409
G++T + GG ++ +T N+ +Y
Sbjct: 189 GKVTSHDLKLGGSNILVTEENKDEY 213
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAV 269
T K +F +Q++ DLR R W V GE D GGV + + E+ +
Sbjct: 48 TRKTLFEDSFQQIMSFSPQDLR--RRLW-VIFPGEEGLDYGGVAREWFFLLSHEVSNPMY 104
Query: 270 PLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXX 329
L N YI NPD L +F+F+G +A+ K
Sbjct: 105 CLFEYAGKDNYCLQINPASYI-NPD------HLKYFRFIGRFIAMALFHGKFIDTGFSLP 157
Query: 330 VWKLIVQEPVTFTDLEDNDTLYAQSLRAIRD 360
+K I+ +PV DLE D + SL +++
Sbjct: 158 FYKRILNKPVGLKDLESIDPEFYNSLIWVKE 188
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
IA G H+ ++T++ G +YGRLG G + +V + SV CG +
Sbjct: 299 IAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCS 358
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGN 498
+ GK +Y++G G +LG+G+
Sbjct: 359 YAVTIDGK-LYSWGSGVNNQLGVGD 382
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLA--LSNKNIRQVSA 74
IV + G AV+ G++++WG+ + QLG+G+ + EP +V++ K++ S
Sbjct: 348 IVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASG 407
Query: 75 GRSHS 79
G H+
Sbjct: 408 GGQHA 412
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 402 TFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNK- 460
T +L ++ CG S VT +G LY++G+G +LG G + P VV+ N
Sbjct: 339 TIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQ 398
Query: 461 -VHVESVSCGLNHTVCI--ADK 479
H+ S G H + + ADK
Sbjct: 399 GKHMLLASGGGQHAIFLVKADK 420
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 20 ISVGTEHVLAVSNTGQVFAWGN--NSDAQLGLGNQINYREP 58
IS G H + G+VFAWG+ +S +GL N R P
Sbjct: 132 ISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP 172
>pdb|1SEK|A Chain A, The Structure Of Active Serpin K From Manduca Sexta And A
Model For Serpin-Protease Complex Formation
Length = 378
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 200 VRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTI-T 258
+R L + K +FA ++R V +KG DL++ S+ + K L E DD V D +
Sbjct: 62 LRALALPNDNVTKDVFADLNRGVRAVKGVDLKMASKIYVAKGL-ELNDDFAAVSRDVFGS 120
Query: 259 EMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPD-LSESLQSLM 303
E+ +V V D NR + +++PD L E+ +S++
Sbjct: 121 EVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETTRSVL 166
>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
Length = 378
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 200 VRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTI-T 258
+R L + K +FA ++R V +KG DL++ S+ + K L E DD V D +
Sbjct: 62 LRALALPNDNVTKDVFADLNRGVRAVKGVDLKMASKIYVAKGL-ELNDDFAAVSRDVFGS 120
Query: 259 EMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPD-LSESLQSLM 303
E+ +V V D NR + +++PD L E+ +S++
Sbjct: 121 EVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETTRSVL 166
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 103 GLPQDIPDHYGHLQN-KPLPLI--RARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQC 156
G PQ +P G ++N K L L+ + L F + YQ R LP G Q V+C
Sbjct: 622 GCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVEC 678
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQ 46
+PA + I+ G H LA+ + G+V AWG N D Q
Sbjct: 57 MPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQ 93
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQ 46
+PA + I+ G H LA+ + G+V AWG N D Q
Sbjct: 59 MPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQ 95
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 82/196 (41%), Gaps = 20/196 (10%)
Query: 216 AQISRQVVKMKG-SDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVR 274
A + +++ M+ +DL+ + V+ GE D GGV + + E+ + +
Sbjct: 19 ALVRLEMIAMENPADLK---KQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDI----- 70
Query: 275 TPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKXXXXXXXXXVWKLI 334
G+ + + NP S ++ F +GI+ G+AI V++ +
Sbjct: 71 ---GMFTYDESTKLFWFNPS---SFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKL 124
Query: 335 VQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTG-RITPIV 393
+ + TF DL D+ + QSL+ + + G E + +I + + + + +
Sbjct: 125 MGKKGTFRDLGDSHPVLYQSLKDL--LEYEGNVEDDM--MITFQISQTDLFGNPMMYDLK 180
Query: 394 TGGQSVPLTFANRLQY 409
G +P+T NR ++
Sbjct: 181 ENGDKIPITNENRKEF 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,442,382
Number of Sequences: 62578
Number of extensions: 646853
Number of successful extensions: 1404
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 130
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)