Query psy15270
Match_columns 506
No_of_seqs 204 out of 2952
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 16:46:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0941|consensus 100.0 4.3E-37 9.4E-42 300.6 1.8 249 210-492 507-759 (850)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 3.1E-34 6.6E-39 265.4 17.0 99 4-105 91-211 (476)
3 KOG1427|consensus 100.0 7.5E-33 1.6E-37 239.3 11.2 98 5-105 46-145 (443)
4 COG5184 ATS1 Alpha-tubulin sup 100.0 2.9E-29 6.3E-34 232.5 20.3 102 4-111 161-272 (476)
5 cd00078 HECTc HECT domain; C-t 100.0 1.6E-31 3.5E-36 256.4 4.9 248 210-489 6-258 (352)
6 COG5021 HUL4 Ubiquitin-protein 100.0 9E-30 1.9E-34 259.6 4.2 243 210-485 520-768 (872)
7 smart00119 HECTc Domain Homolo 100.0 1.9E-29 4.1E-34 238.8 2.4 224 236-490 11-241 (336)
8 KOG0939|consensus 99.9 2.4E-29 5.2E-34 241.4 -0.2 249 209-487 368-617 (720)
9 KOG1427|consensus 99.9 6.8E-27 1.5E-31 202.6 9.2 99 3-105 98-197 (443)
10 KOG0942|consensus 99.9 1.9E-24 4.1E-29 213.1 7.7 250 210-492 645-908 (1001)
11 KOG4427|consensus 99.9 4.7E-23 1E-27 198.5 2.5 252 210-494 717-980 (1096)
12 KOG0783|consensus 99.8 4.7E-19 1E-23 173.2 5.1 75 28-105 136-212 (1267)
13 KOG0170|consensus 99.8 4.1E-19 8.8E-24 165.0 4.3 238 208-472 229-501 (621)
14 KOG1428|consensus 99.7 2.4E-17 5.1E-22 167.9 12.2 86 411-497 769-854 (3738)
15 KOG0783|consensus 99.7 4.7E-17 1E-21 159.4 11.2 99 4-105 164-264 (1267)
16 PF00632 HECT: HECT-domain (ub 99.7 8.8E-19 1.9E-23 167.1 -7.1 205 258-489 1-219 (317)
17 KOG1428|consensus 99.6 1.1E-15 2.5E-20 156.0 10.8 92 12-106 764-855 (3738)
18 PF00415 RCC1: Regulator of ch 99.6 3.7E-16 8E-21 104.8 3.6 50 33-82 1-51 (51)
19 KOG0940|consensus 99.6 6.1E-17 1.3E-21 150.9 -3.7 241 210-485 22-263 (358)
20 PF13540 RCC1_2: Regulator of 99.5 2.8E-14 6E-19 82.3 3.9 30 17-46 1-30 (30)
21 PF13540 RCC1_2: Regulator of 99.3 4.6E-13 1E-17 77.2 1.9 30 69-101 1-30 (30)
22 PF00415 RCC1: Regulator of ch 99.3 8.6E-12 1.9E-16 83.5 5.5 49 427-475 1-50 (51)
23 KOG0943|consensus 98.8 4.3E-09 9.3E-14 107.6 4.6 175 288-479 2729-2907(3015)
24 KOG0941|consensus 98.3 1.8E-07 4E-12 93.9 -0.1 96 409-505 14-116 (850)
25 smart00706 TECPR Beta propelle 81.4 2.8 6E-05 24.8 3.4 24 15-38 8-32 (35)
26 smart00706 TECPR Beta propelle 79.3 2.9 6.3E-05 24.7 3.0 22 68-89 9-31 (35)
27 KOG0943|consensus 72.8 4.3 9.4E-05 44.2 4.1 82 12-94 371-455 (3015)
28 PF11725 AvrE: Pathogenicity f 64.7 12 0.00026 42.8 5.5 79 8-100 696-780 (1774)
29 PF07569 Hira: TUP1-like enhan 60.6 12 0.00025 33.5 3.9 36 4-42 5-40 (219)
30 PF06739 SBBP: Beta-propeller 59.5 10 0.00022 23.0 2.3 18 25-42 15-32 (38)
31 PF07569 Hira: TUP1-like enhan 59.3 8.5 0.00018 34.4 2.8 26 68-94 14-39 (219)
32 KOG3669|consensus 57.9 38 0.00083 34.2 7.0 68 16-89 228-297 (705)
33 PF12341 DUF3639: Protein of u 55.7 34 0.00073 19.0 3.7 23 15-37 2-24 (27)
34 PF07312 DUF1459: Protein of u 55.2 7.8 0.00017 27.4 1.4 15 32-46 54-69 (84)
35 KOG0649|consensus 47.8 30 0.00066 30.9 4.2 34 423-456 76-110 (325)
36 PF13418 Kelch_4: Galactose ox 38.4 30 0.00065 21.9 2.2 16 25-40 4-19 (49)
37 PF03785 Peptidase_C25_C: Pept 30.0 90 0.0019 22.6 3.5 41 6-48 9-50 (81)
38 PF13938 DUF4213: Domain of un 29.9 71 0.0015 23.5 3.3 26 9-34 6-31 (87)
39 PF13570 PQQ_3: PQQ-like domai 27.8 74 0.0016 19.1 2.6 21 20-40 17-37 (40)
40 PF05862 IceA2: Helicobacter p 26.7 1.1E+02 0.0024 20.2 3.2 26 14-39 25-50 (59)
41 PF11725 AvrE: Pathogenicity f 25.1 68 0.0015 37.2 3.4 71 9-86 739-815 (1774)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 24.7 99 0.0021 23.9 3.2 39 3-41 8-47 (107)
43 KOG0883|consensus 22.4 51 0.0011 31.6 1.5 20 22-41 112-131 (518)
44 PF01436 NHL: NHL repeat; Int 22.4 1.4E+02 0.0031 16.3 2.8 17 26-42 5-21 (28)
45 cd00265 MADS_MEF2_like MEF2 (m 22.0 1E+02 0.0023 22.1 2.8 26 465-490 35-60 (77)
46 PF08887 GAD-like: GAD-like do 21.9 83 0.0018 24.5 2.4 21 23-43 78-98 (109)
47 PF06204 CBM_X: Putative carbo 21.2 2.6E+02 0.0056 19.4 4.5 30 16-45 26-55 (66)
48 PF03785 Peptidase_C25_C: Pept 21.0 1.9E+02 0.004 21.0 3.8 42 451-494 8-49 (81)
49 KOG1034|consensus 20.7 2.2E+02 0.0047 27.0 5.1 57 29-94 324-382 (385)
50 COG4256 HemP Hemin uptake prot 20.3 1.2E+02 0.0027 20.3 2.5 26 22-47 34-59 (63)
No 1
>KOG0941|consensus
Probab=100.00 E-value=4.3e-37 Score=300.61 Aligned_cols=249 Identities=20% Similarity=0.287 Sum_probs=217.9
Q ss_pred CCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceE
Q psy15270 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRY 289 (506)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~ 289 (506)
.|..+..++.+++......|++ ++++|+|.||.|+|+||+.+|||.++.+++++|.+|||+...+.. ..
T Consensus 507 rR~~lv~Dsl~~l~~~~~~Dl~---K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~--------~~ 575 (850)
T KOG0941|consen 507 RRDHLVEDALRQLSMISMSDLK---KQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESS--------LL 575 (850)
T ss_pred ehhhhHHHHHHHHHhhhhhhhh---cceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccccc--------ee
Confidence 6888999999999999999999 789999999999999999999999999999999999999887643 37
Q ss_pred EeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCCcC
Q psy15270 290 ILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEA 369 (506)
Q Consensus 290 ~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~~ 369 (506)
|+++....... +|.++|+++|+||++...++++||..+||.+++.+.+++|+.++.|.++++|+.+++.+..++. +
T Consensus 576 WF~~~~~~~~~---~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~e-d 651 (850)
T KOG0941|consen 576 WFNPSPFEEEK---QYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVE-D 651 (850)
T ss_pred eecCCCCCccc---eeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchh-h
Confidence 78777762222 6888999999999999999999999999999999999999999999999999999997754332 3
Q ss_pred cccccccCcceeeec-C--CCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCC
Q psy15270 370 NFPEIIPLECFEGAS-W--TGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTT 446 (506)
Q Consensus 370 ~~~~~~~~~~f~~~~-~--~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~ 446 (506)
.|.. +|...- . ..+..+|+|+|.+++|+.+|+.+||.+.+...++.++ ..+..++..|
T Consensus 652 ~f~l-----~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv--------------~~q~~aF~~G 712 (850)
T KOG0941|consen 652 VFDL-----TFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSV--------------KKQFEAFRRG 712 (850)
T ss_pred heee-----EEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhH--------------HHHHHHHHHH
Confidence 3333 233221 1 3457899999999999999999999999999999999 8999999999
Q ss_pred CcccccEEeec-cCCCcEEEEEecCCcceEEEecCCcEEEEEcCCCC
Q psy15270 447 MNWKVPERVVA-LNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYG 492 (506)
Q Consensus 447 ~~~~~P~~v~~-l~~~~v~~i~~G~~ht~~~~~~~g~vy~wG~n~~G 492 (506)
|..+.-..++. |.++|++.+.||....++...++.+.|.-|+.+..
T Consensus 713 F~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~~ 759 (850)
T KOG0941|consen 713 FYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSDS 759 (850)
T ss_pred HHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCCC
Confidence 99998888888 99999999999999999988999999998877643
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.1e-34 Score=265.39 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=87.6
Q ss_pred CCceeeCCC--CCCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCC-------------C---CcCcCEEecc--
Q psy15270 4 TSGRHIPAF--KNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQ-------------I---NYREPQLVLA-- 63 (506)
Q Consensus 4 ~~P~~v~~l--~~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~-------------~---~~~~P~~v~~-- 63 (506)
..|++++.. +...|+++|||++|+++|++||+||+||+|..|+||.... . ...+|..|+.
T Consensus 91 ~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s 170 (476)
T COG5184 91 DRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGS 170 (476)
T ss_pred cCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccc
Confidence 579999988 7889999999999999999999999999999999998872 1 2779999987
Q ss_pred --CCCCCEEEEEcCCCceEEEeCCCCceecCCCCCCCCCccCCC
Q psy15270 64 --LSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLP 105 (506)
Q Consensus 64 --l~~~~i~~Ia~G~~hs~al~~~G~vy~~WG~~~n~~GqLG~~ 105 (506)
....+|++++||+++|++|+++|.|| +||. +..+.++.+
T Consensus 171 ~~~s~~~vv~l~cg~e~svil~~~G~V~-~~gt--~r~~e~~~g 211 (476)
T COG5184 171 SAKSHLRVVKLACGWEISVILTADGRVY-SWGT--FRCGELGQG 211 (476)
T ss_pred cccCChheEEeecCCceEEEEccCCcEE-EecC--ccccccccc
Confidence 22238999999999999999999999 9999 888888765
No 3
>KOG1427|consensus
Probab=100.00 E-value=7.5e-33 Score=239.34 Aligned_cols=98 Identities=26% Similarity=0.452 Sum_probs=93.7
Q ss_pred CceeeCCCCCCCEEEEEcCC--CceEEEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEEE
Q psy15270 5 SGRHIPAFKNIHIVDISVGT--EHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAW 82 (506)
Q Consensus 5 ~P~~v~~l~~~~i~~va~G~--~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~al 82 (506)
.|.+...+.+++|.-|+.|. .|+++|+-+|+.|+||.|..||||+++..-+..|+.|+.|...+|++.|||.+||++|
T Consensus 46 sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~l 125 (443)
T KOG1427|consen 46 SPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVL 125 (443)
T ss_pred cceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEE
Confidence 68888999999999999885 8999999999999999999999999988889999999999999999999999999999
Q ss_pred eCCCCceecCCCCCCCCCccCCC
Q psy15270 83 TAPPLPPHTPGHTPSSSLRLGLP 105 (506)
Q Consensus 83 ~~~G~vy~~WG~~~n~~GqLG~~ 105 (506)
+++|+|| ++|. |.+||||++
T Consensus 126 tdtG~v~-afGe--NK~GQlGlg 145 (443)
T KOG1427|consen 126 TDTGQVL-AFGE--NKYGQLGLG 145 (443)
T ss_pred ecCCcEE-Eecc--ccccccccc
Confidence 9999999 9999 999999965
No 4
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.97 E-value=2.9e-29 Score=232.50 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=85.8
Q ss_pred CCceeeCC----CCCCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCCCCc------CcCEEeccCCCCCEEEEE
Q psy15270 4 TSGRHIPA----FKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINY------REPQLVLALSNKNIRQVS 73 (506)
Q Consensus 4 ~~P~~v~~----l~~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~~------~~P~~v~~l~~~~i~~Ia 73 (506)
.+|.+|+. ..-.+|++++||..|+++|+++|+||+||.+..+-|+.|...++ .+|..++ ...|+++|
T Consensus 161 ~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla 237 (476)
T COG5184 161 STPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLA 237 (476)
T ss_pred cCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeec
Confidence 57999998 22347999999999999999999999999999999999966542 3455555 23699999
Q ss_pred cCCCceEEEeCCCCceecCCCCCCCCCccCCCCCCCCc
Q psy15270 74 AGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDH 111 (506)
Q Consensus 74 ~G~~hs~al~~~G~vy~~WG~~~n~~GqLG~~~~~~~~ 111 (506)
+|.+|.+||+.+|+|| +||+ |.+||||.+.....+
T Consensus 238 ~G~dh~i~lt~~G~vy-~~Gs--~qkgqlG~~~~e~~~ 272 (476)
T COG5184 238 AGADHLIALTNEGKVY-GWGS--NQKGQLGRPTSERLK 272 (476)
T ss_pred cCCceEEEEecCCcEE-EecC--CcccccCCchhhhcc
Confidence 9999999999999999 9999 999999987444333
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.97 E-value=1.6e-31 Score=256.43 Aligned_cols=248 Identities=24% Similarity=0.346 Sum_probs=221.8
Q ss_pred CCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceE
Q psy15270 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRY 289 (506)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~ 289 (506)
.|.+++.++++++....+.+++ ++|+|+|.||.|+|+||++||||.+++++++++..+||+.++|. +..+
T Consensus 6 ~R~~i~~~~~~~l~~~~~~~l~---~~l~V~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~-------~~~~ 75 (352)
T cd00078 6 RRDRILEDALRQLSKVSSSDLK---KVLEVEFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDD-------SGLL 75 (352)
T ss_pred ECCcHHHHHHHHHHhcCHHHhc---CceEEEECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCC-------CceE
Confidence 5778999999999998888887 69999999999999999999999999999999999999999874 3458
Q ss_pred EeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCCcC
Q psy15270 290 ILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEA 369 (506)
Q Consensus 290 ~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~~ 369 (506)
+|+|.+...+.+.++|+++|+++|+|++++.+++++|++.+||.+++.+++++|+.++|+.+++++..+++++.. .+
T Consensus 76 ~~~p~~~~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~---~~ 152 (352)
T cd00078 76 YPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGD---ED 152 (352)
T ss_pred EeCCCcccchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCc---hh
Confidence 999999866788999999999999999999999999999999999999999999999999999999999987642 22
Q ss_pred cccccccCcceeee----cCCCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCC
Q psy15270 370 NFPEIIPLECFEGA----SWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGT 445 (506)
Q Consensus 370 ~~~~~~~~~~f~~~----~~~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~ 445 (506)
.+.. .|... ..++..++|+++|.+++||.+|+.+||...+.+.++..+ ..+...+.+
T Consensus 153 ~l~l-----~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~--------------~~~~~afr~ 213 (352)
T cd00078 153 DLEL-----TFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGI--------------EEQVEAFRD 213 (352)
T ss_pred hhcc-----eeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchH--------------HHHHHHHHH
Confidence 2222 23322 445788999999999999999999999999999887677 788888999
Q ss_pred CCcccccEEeec-cCCCcEEEEEecCCcceEEEecCCcEEEEEcC
Q psy15270 446 TMNWKVPERVVA-LNKVHVESVSCGLNHTVCIADKGKAVYAFGDG 489 (506)
Q Consensus 446 ~~~~~~P~~v~~-l~~~~v~~i~~G~~ht~~~~~~~g~vy~wG~n 489 (506)
|+..++|...+. |++.|++.++||...+++..++.++.|..|..
T Consensus 214 Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~ 258 (352)
T cd00078 214 GFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYS 258 (352)
T ss_pred HHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCC
Confidence 999999999888 99999999999999999999999999998875
No 6
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9e-30 Score=259.62 Aligned_cols=243 Identities=19% Similarity=0.312 Sum_probs=219.6
Q ss_pred CCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceE
Q psy15270 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRY 289 (506)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~ 289 (506)
.|.++|.+++++++.....+++ ..+.++|.||.|+|+||+.|||+..+++++++|.+++|...++.. ...
T Consensus 520 rRd~vf~Dsy~~i~~~~~~~~k---~~L~i~F~~EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~-------~~~ 589 (872)
T COG5021 520 RRDRVFEDSYREIMDESGDDLK---KTLEIEFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDL-------YTL 589 (872)
T ss_pred ecccchHHHHHHHHHhchhhhc---ceEEEEecCcccccCCccchHHHHHHhHHhcCCcccceeeecccc-------ccc
Confidence 7889999999999999999988 579999999999999999999999999999999999999888643 335
Q ss_pred EeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCC-CCc
Q psy15270 290 ILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSG-VTE 368 (506)
Q Consensus 290 ~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~-~~~ 368 (506)
.++|.+..+++++.+|+|+|++||.||+++..|++.|+..|||.+++.++.+.|+.++||.++++|.++++++... ..+
T Consensus 590 ~~n~~s~~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~l~ 669 (872)
T COG5021 590 PINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETILD 669 (872)
T ss_pred CcCccccCCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcceee
Confidence 6777777789999999999999999999999999999999999999999999999999999999999999987654 222
Q ss_pred CcccccccCcceeeecC---CCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCC
Q psy15270 369 ANFPEIIPLECFEGASW---TGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGT 445 (506)
Q Consensus 369 ~~~~~~~~~~~f~~~~~---~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~ 445 (506)
. +|+.... .-..|+|+|+|++++||.+|+.+||.+++.+.+...+ +.+.-++-+
T Consensus 670 l---------~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~i--------------e~Q~~AF~~ 726 (872)
T COG5021 670 L---------TFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRV--------------EKQFSAFKS 726 (872)
T ss_pred e---------eEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhH--------------HHHHHHHHh
Confidence 2 2333222 2346999999999999999999999999999999999 999999999
Q ss_pred CCcccccEEeec-cCCCcEEEEEecCCc-ceEEEecCCcEEE
Q psy15270 446 TMNWKVPERVVA-LNKVHVESVSCGLNH-TVCIADKGKAVYA 485 (506)
Q Consensus 446 ~~~~~~P~~v~~-l~~~~v~~i~~G~~h-t~~~~~~~g~vy~ 485 (506)
|+..++|..++. |.+.|++.+.||.+. +++.+++++|.|.
T Consensus 727 GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~ 768 (872)
T COG5021 727 GFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYH 768 (872)
T ss_pred hHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhccccc
Confidence 999999998888 999999999999999 9999999999997
No 7
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.95 E-value=1.9e-29 Score=238.83 Aligned_cols=224 Identities=22% Similarity=0.296 Sum_probs=195.7
Q ss_pred eEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceEEeCCCCCC-chhhhhHHHHHHHHHHh
Q psy15270 236 AWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSE-SLQSLMHFKFLGILFGV 314 (506)
Q Consensus 236 ~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~~~~p~~~~-~~~~~~~~~~~G~~~~~ 314 (506)
+|+|+|.||.|+|+||++||||.++++++++++.+||+.++|.+ .++++|.... ++.++++|+++|+++|+
T Consensus 11 ~l~V~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~--------~~~~~p~~~~~~~~~l~~f~~~G~lig~ 82 (336)
T smart00119 11 VLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDY--------LLYPNPRAFFANPEHLAYFRFIGRVLGK 82 (336)
T ss_pred eEEEEECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCC--------eEEeCCCccccchHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999988753 3778776653 47789999999999999
Q ss_pred hhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHH-hcccCCCCcCcccccccCcceee----ecCCCCc
Q psy15270 315 AIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIR-DIHLSGVTEANFPEIIPLECFEG----ASWTGRI 389 (506)
Q Consensus 315 a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~f~~----~~~~g~~ 389 (506)
|++++.+++++|++.+||.+++.+++++|+.++|+.+++++..++ +.+..+ .+.. +|.. ....+..
T Consensus 83 al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~----~~~l-----~F~~~~~~~~g~~~~ 153 (336)
T smart00119 83 ALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSE----ELDL-----TFSIVLTSEFGQVKV 153 (336)
T ss_pred HHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcc----cccc-----eEEEEeeecCCCcce
Confidence 999999999999999999999999999999999999999999994 433221 1221 3331 2234578
Q ss_pred cccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcccccEEeec-cCCCcEEEEEe
Q psy15270 390 TPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVA-LNKVHVESVSC 468 (506)
Q Consensus 390 ~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~~~P~~v~~-l~~~~v~~i~~ 468 (506)
+||+++|++++||.+|+.+||...+.+.+.+++ ..+...+.+|+..++|...+. |++.|++.++|
T Consensus 154 ~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~--------------~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lic 219 (336)
T smart00119 154 VELKPGGSNIPVTEENKKEYVHLVIEYRLNKGI--------------EKQLEAFREGFSEVIPENLLRLFTPEELELLIC 219 (336)
T ss_pred EecCCCCCCCcCCHHHHHHHHHHHHHHHHhhhH--------------HHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhC
Confidence 999999999999999999999999999988888 888889999999999998888 99999999999
Q ss_pred cCCcceEEEecCCcEEEEEcCC
Q psy15270 469 GLNHTVCIADKGKAVYAFGDGE 490 (506)
Q Consensus 469 G~~ht~~~~~~~g~vy~wG~n~ 490 (506)
|.+++++..++.++.|..|+..
T Consensus 220 G~~~i~~~~l~~~~~~~~g~~~ 241 (336)
T smart00119 220 GSPEIDVDDLKSNTEYKGGYSE 241 (336)
T ss_pred CCCCCCHHHHhhheEEcCCCCC
Confidence 9999999999999999877654
No 8
>KOG0939|consensus
Probab=99.95 E-value=2.4e-29 Score=241.35 Aligned_cols=249 Identities=21% Similarity=0.273 Sum_probs=222.6
Q ss_pred CCCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcce
Q psy15270 209 QTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDR 288 (506)
Q Consensus 209 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~ 288 (506)
+.|..+|.++++.+...++++++ ..+.|.|.||+|.|+||+.||||..++++++++.+.+|+..+++ ..+
T Consensus 368 v~R~~v~~~S~~~~~~~s~~e~~---~rl~I~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d-------~tt 437 (720)
T KOG0939|consen 368 VRRALVLEDSFRALLYKSPEELK---TRLEVTFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSD-------QTT 437 (720)
T ss_pred EeHHHHHHHHHHHHHhCCHHHHh---cceEEEEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCCC-------ceE
Confidence 37889999999999999999999 58999999999999999999999999999999999999988753 357
Q ss_pred EEeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCCc
Q psy15270 289 YILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTE 368 (506)
Q Consensus 289 ~~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~ 368 (506)
+.|||++..+++|+.+|+|+|+++|.|++++..+.+.|.+.+||+++|.+++..|++..||.|++++.++++++..+..+
T Consensus 438 ~~pn~~s~~np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~DP~y~k~l~~il~ndis~~l~ 517 (720)
T KOG0939|consen 438 FHPNPNSYVNPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESADPEYYKSLVWILKNDISDTLE 517 (720)
T ss_pred EeeCCcccCChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhcChHHhhceeehhcCCccccee
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred CcccccccCcceeeecCCCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCc
Q psy15270 369 ANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMN 448 (506)
Q Consensus 369 ~~~~~~~~~~~f~~~~~~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~ 448 (506)
..|.. ..+.|. --++++|+|+|.++.|+..||.+||.+.....+.+++ ..+.-++..|+.
T Consensus 518 ltfs~--e~~~~g----~~~~~eL~p~G~~i~Vt~~nK~~yv~lv~q~rL~~~i--------------r~ql~afl~Gl~ 577 (720)
T KOG0939|consen 518 LTFSE--EDDEFG----VESVVELKPGGAKIYVTEANKQEYVQLVTQYRLTNSI--------------RKQLDAFLAGLH 577 (720)
T ss_pred EEEEE--eecccc----ccceeecccCCCceeeccccHHHHHHHHHHHHHHhhH--------------HHHHHHHHHHHH
Confidence 22221 111121 1378999999999999999999999999999999999 888888999999
Q ss_pred ccccEEeec-cCCCcEEEEEecCCcceEEEecCCcEEEEE
Q psy15270 449 WKVPERVVA-LNKVHVESVSCGLNHTVCIADKGKAVYAFG 487 (506)
Q Consensus 449 ~~~P~~v~~-l~~~~v~~i~~G~~ht~~~~~~~g~vy~wG 487 (506)
..+|..++. |+..|++.+.||-+.+++-+++.++.|--+
T Consensus 578 ~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~ 617 (720)
T KOG0939|consen 578 EIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGY 617 (720)
T ss_pred HhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhcc
Confidence 999999999 999999999999999999999998888644
No 9
>KOG1427|consensus
Probab=99.94 E-value=6.8e-27 Score=202.58 Aligned_cols=99 Identities=28% Similarity=0.396 Sum_probs=87.1
Q ss_pred CCCceeeCCCCCCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCCCC-cCcCEEeccCCCCCEEEEEcCCCceEE
Q psy15270 3 GTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQIN-YREPQLVLALSNKNIRQVSAGRSHSAA 81 (506)
Q Consensus 3 ~~~P~~v~~l~~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~Ia~G~~hs~a 81 (506)
+.+|+.|++|...+|++.|||.+||++|+++|+||+||.|.+||||+|++.+ ...|.++.-.. ..|+.|+||.++|+.
T Consensus 98 ~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~-~~v~~v~cga~ftv~ 176 (443)
T KOG1427|consen 98 RERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVS-DEVTNVACGADFTVW 176 (443)
T ss_pred ccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccC-ccceeeccccceEEE
Confidence 5689999999999999999999999999999999999999999999999875 33333332222 259999999999999
Q ss_pred EeCCCCceecCCCCCCCCCccCCC
Q psy15270 82 WTAPPLPPHTPGHTPSSSLRLGLP 105 (506)
Q Consensus 82 l~~~G~vy~~WG~~~n~~GqLG~~ 105 (506)
|+..+.+. +.|. -.+||||.+
T Consensus 177 l~~~~si~-t~gl--p~ygqlgh~ 197 (443)
T KOG1427|consen 177 LSSTESIL-TAGL--PQYGQLGHG 197 (443)
T ss_pred eeccccee-ecCC--ccccccccC
Confidence 99999999 9999 999999966
No 10
>KOG0942|consensus
Probab=99.90 E-value=1.9e-24 Score=213.13 Aligned_cols=250 Identities=16% Similarity=0.231 Sum_probs=216.3
Q ss_pred CCccHHHHHHHHHhcCCCCCccCCCceEEEEEec-----ccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCC
Q psy15270 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLG-----EGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGY 284 (506)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~g-----e~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~ 284 (506)
.|+.|+.++|+++......+++ ..++|+|++ |.|+|.||.+|||++.++++.+++++++|.-+....
T Consensus 645 RRd~iyeDAfd~f~p~~e~dlk---~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~~l----- 716 (1001)
T KOG0942|consen 645 RRDHIYEDAFDAFSPKGEPDLK---SSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETEDHL----- 716 (1001)
T ss_pred ehhhhHHHHHHhcCccCCcccc---cceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeecccce-----
Confidence 7889999999999999888888 678899985 778899999999999999999999999998877433
Q ss_pred CcceEEeCCCCCC--chhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCC--CcCccccchHHHHHHHHHHHh
Q psy15270 285 NRDRYILNPDLSE--SLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPV--TFTDLEDNDTLYAQSLRAIRD 360 (506)
Q Consensus 285 ~~~~~~~~p~~~~--~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~--~~~d~~~~d~~~~~~l~~~~~ 360 (506)
..|||+..- ..+.++.|.|+|+++|.+++++..++++|+.+|.+.+++.+- .+.|+.+.||.+++.|..++.
T Consensus 717 ----LYPNp~~~~l~~~~~lkhy~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~ 792 (1001)
T KOG0942|consen 717 ----LYPNPTAAMLLDVDCLKHYYFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKN 792 (1001)
T ss_pred ----ecCCCCchhhhhhHHHHHHHHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHh
Confidence 678887763 345789999999999999999999999999999999998876 789999999999999999999
Q ss_pred cccCCCCcCcccccccCcceeeecC---CCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCC
Q psy15270 361 IHLSGVTEANFPEIIPLECFEGASW---TGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGD 437 (506)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~f~~~~~---~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~ 437 (506)
++..++.+-.+. |+.... .-++++|+|+|++++||.+|+.+|+.++....++.-+ .
T Consensus 793 y~gddi~eL~L~-------FtVv~~e~G~~~vVeLkPnGs~i~VTneNvi~YihLVsnY~LN~ri--------------r 851 (1001)
T KOG0942|consen 793 YNGDDISELQLD-------FTVVNSELGERQVVELKPNGSKIRVTNENVIEYIHLVSNYKLNQRI--------------R 851 (1001)
T ss_pred cCCCchhhccce-------EEEeccccccceeEEeccCCccceeechhhhhhhHHhhhhHHHHHH--------------H
Confidence 887666655443 433322 2368999999999999999999999999999888888 7
Q ss_pred CCcccCCCCCcccccEEeec-cCCCcEEEEEecCCc-ceEEEecCCcEEEEEcCCCC
Q psy15270 438 YGRLGHGTTMNWKVPERVVA-LNKVHVESVSCGLNH-TVCIADKGKAVYAFGDGEYG 492 (506)
Q Consensus 438 ~gqlg~~~~~~~~~P~~v~~-l~~~~v~~i~~G~~h-t~~~~~~~g~vy~wG~n~~G 492 (506)
.+..++..|+..++|.+++. |...|++-+..|++. +++..++.++.|+-|+....
T Consensus 852 ~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~h 908 (1001)
T KOG0942|consen 852 RQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDH 908 (1001)
T ss_pred HHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCC
Confidence 88889999999999999998 999999999999987 55666788999987765543
No 11
>KOG4427|consensus
Probab=99.86 E-value=4.7e-23 Score=198.51 Aligned_cols=252 Identities=15% Similarity=0.221 Sum_probs=209.8
Q ss_pred CCccHHHHHHHHHhcCCCCCccCCCceEEEEEec-----ccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCC
Q psy15270 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLG-----EGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGY 284 (506)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~g-----e~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~ 284 (506)
.|..|.++.|+++..+....+. ...+|+|++ |.|+|.+|+++||++++.+..+++.++||-.++.
T Consensus 717 rR~rivEDGf~qL~~l~~~alK---s~IrVkFVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~------- 786 (1096)
T KOG4427|consen 717 RRGRIVEDGFQQLNSLGSPALK---SVIRVKFVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTST------- 786 (1096)
T ss_pred EcccchhhHHHHHHhccchhhh---ceEEEEEecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCC-------
Confidence 6788999999999999888888 688999986 6788999999999999999999999999988773
Q ss_pred CcceEEeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCC--CcCccccchHHHHHHHHHHHhcc
Q psy15270 285 NRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPV--TFTDLEDNDTLYAQSLRAIRDIH 362 (506)
Q Consensus 285 ~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~--~~~d~~~~d~~~~~~l~~~~~~~ 362 (506)
+...+|.|++..-..++++|+|+|+++|.|++++..++++|++.|...++|.-- ..+.+..+||++|+++..++..+
T Consensus 787 -d~~LyPSPts~~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYd 865 (1096)
T KOG4427|consen 787 -DRRLYPSPTSYHHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYD 865 (1096)
T ss_pred -CceecCCchhhhhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhc
Confidence 234779999887889999999999999999999999999999999999998754 66899999999999999998875
Q ss_pred cCCCCcCcccccccCcceeee-cCCCC--ccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCC
Q psy15270 363 LSGVTEANFPEIIPLECFEGA-SWTGR--ITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYG 439 (506)
Q Consensus 363 ~~~~~~~~~~~~~~~~~f~~~-~~~g~--~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~g 439 (506)
.+ +. +++. +|+.. +--|+ .+++.|+|+.++||.+||.+|+.......++.-+ ..+
T Consensus 866 gd-~~--dL~L-----tfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi--------------~eq 923 (1096)
T KOG4427|consen 866 GD-LK--DLCL-----TFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQI--------------VEQ 923 (1096)
T ss_pred cc-Hh--hhee-----eeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHH--------------HHH
Confidence 32 11 1211 12111 11233 5899999999999999999999998888887777 777
Q ss_pred cccCCCCCcccccEEeec-cCCCcEEEEEecCCc-ceEEEecCCcEEEEEcCCCCcc
Q psy15270 440 RLGHGTTMNWKVPERVVA-LNKVHVESVSCGLNH-TVCIADKGKAVYAFGDGEYGKL 494 (506)
Q Consensus 440 qlg~~~~~~~~~P~~v~~-l~~~~v~~i~~G~~h-t~~~~~~~g~vy~wG~n~~GqL 494 (506)
..++-.|+...+-..++. |++.|+..+..|.++ +++..++.++.|.-|.-+..|+
T Consensus 924 t~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrv 980 (1096)
T KOG4427|consen 924 TNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRV 980 (1096)
T ss_pred HHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchh
Confidence 777888887776555666 999999999999887 6777788899999998776653
No 12
>KOG0783|consensus
Probab=99.75 E-value=4.7e-19 Score=173.15 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=68.3
Q ss_pred EEEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCC--CCCEEEEEcCCCceEEEeCCCCceecCCCCCCCCCccCCC
Q psy15270 28 LAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALS--NKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLP 105 (506)
Q Consensus 28 ~al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~--~~~i~~Ia~G~~hs~al~~~G~vy~~WG~~~n~~GqLG~~ 105 (506)
.++|....||.||.|.+--||+|+....++|..|..+. +.-+.||+.+.+||++|++.|+|| ++|. +..|.||.+
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY-~cGh--G~GGRlG~g 212 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVY-VCGH--GAGGRLGFG 212 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEE-Eecc--CCCCccCcC
Confidence 47888899999999999999999999999999998765 345789999999999999999999 9999 999999954
No 13
>KOG0170|consensus
Probab=99.75 E-value=4.1e-19 Score=164.97 Aligned_cols=238 Identities=17% Similarity=0.208 Sum_probs=184.5
Q ss_pred CCCCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCC-CCCCCCCc
Q psy15270 208 KQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNG-VADTGYNR 286 (506)
Q Consensus 208 ~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~-~~~~g~~~ 286 (506)
+.+|+.||.++.+.|....... ..+.|+|.+|.|.+. ||+-|||+.++++++.+.++||....-. +..-+...
T Consensus 229 risR~~Il~sa~kvm~~ygss~-----~vLEIEY~~EvGTGL-GPTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~~~ 302 (621)
T KOG0170|consen 229 RISRKTILASALKVMEKYGSSK-----AVLEIEYEEEVGTGL-GPTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQEN 302 (621)
T ss_pred hhhHHHHHHHHHHHHHHhcCCc-----ceEEEEeccccccCC-CcceeeHHHHHHHHhhccccccccCceeeccCCCCCC
Confidence 4589999999999998775554 578999999999987 8999999999999999999999764210 00011111
Q ss_pred ceE-------EeCC--CCCCc---hhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHH
Q psy15270 287 DRY-------ILNP--DLSES---LQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQS 354 (506)
Q Consensus 287 ~~~-------~~~p--~~~~~---~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~ 354 (506)
..+ .|.| ....+ ...+++|.++|++++.|+.++..++++++..|||++++++++..|+..+|+.+.++
T Consensus 303 t~~v~~~sgLFp~P~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~s 382 (621)
T KOG0170|consen 303 TKDVYITSGLFPRPWPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELAKS 382 (621)
T ss_pred cchhhhccccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHHHH
Confidence 111 1222 22222 34788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCC---------------------CCcCcccccccCcceeeecCCCCccccccCCCceeeeeccchhhhhhh
Q psy15270 355 LRAIRDIHLSG---------------------VTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAA 413 (506)
Q Consensus 355 l~~~~~~~~~~---------------------~~~~~~~~~~~~~~f~~~~~~g~~~~l~~~g~~~~v~~~n~~~~v~~~ 413 (506)
+..++.....- ...++++. .|+.. .-..++|+|+|.+++|+..|.++|+.-+
T Consensus 383 L~~Le~vv~~k~~~~~~~~d~~~a~~dltl~g~~iEdL~L-----dFTLP--G~p~ieL~p~g~~~~V~~~NleEYi~~V 455 (621)
T KOG0170|consen 383 LLELELVVPRKKKLEKYIGDVANADDDLTLNGCSIEDLSL-----DFTLP--GFPDIELIPGGANKPVTISNLEEYIHGV 455 (621)
T ss_pred HHHHHHHhhhhhhhhhhcccccccccceeecCcchhhcee-----eEecC--CCCCeeeccCCCCCccccccHHHHHHHH
Confidence 98876432110 00011111 11111 1246899999999999999999999999
Q ss_pred hhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcccccEEeec-cCCCcEEEEEecCCc
Q psy15270 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVA-LNKVHVESVSCGLNH 472 (506)
Q Consensus 414 i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~~~P~~v~~-l~~~~v~~i~~G~~h 472 (506)
|.+-....+ +.+.-++.+||+++.|-.-+. |.++|++.+.||...
T Consensus 456 Id~tv~kGV--------------qkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e 501 (621)
T KOG0170|consen 456 IDATVGKGV--------------QKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEE 501 (621)
T ss_pred HHHHHhhhH--------------HHHHHHHHhhhhhccchhheeecCHHHHHHHhccchh
Confidence 998888888 888899999999999977666 999999999999765
No 14
>KOG1428|consensus
Probab=99.72 E-value=2.4e-17 Score=167.95 Aligned_cols=86 Identities=28% Similarity=0.530 Sum_probs=81.0
Q ss_pred hhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcccccEEeeccCCCcEEEEEecCCcceEEEecCCcEEEEEcCC
Q psy15270 411 EAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGE 490 (506)
Q Consensus 411 ~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~~~P~~v~~l~~~~v~~i~~G~~ht~~~~~~~g~vy~wG~n~ 490 (506)
+.+++||.+|++.|.+|++||++|.|..||||+|+...+..|+.+..+++.-+++|++|.+|| ++...+|.||++|.=.
T Consensus 769 v~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT-~l~~~DGsVFTFGaF~ 847 (3738)
T KOG1428|consen 769 VSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHT-ILRANDGSVFTFGAFG 847 (3738)
T ss_pred EEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCce-EEEecCCcEEEecccc
Confidence 456999999999999999999999999999999999999999999998888899999999998 6778888999999999
Q ss_pred CCcccCC
Q psy15270 491 YGKLGLG 497 (506)
Q Consensus 491 ~GqLG~g 497 (506)
.||||.-
T Consensus 848 KGQL~RP 854 (3738)
T KOG1428|consen 848 KGQLARP 854 (3738)
T ss_pred CccccCc
Confidence 9999974
No 15
>KOG0783|consensus
Probab=99.71 E-value=4.7e-17 Score=159.39 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=90.5
Q ss_pred CCceeeCCCC--CCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEE
Q psy15270 4 TSGRHIPAFK--NIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAA 81 (506)
Q Consensus 4 ~~P~~v~~l~--~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~a 81 (506)
-.|..|..++ ++=+.||+.+.+|+++|++.|.||++|-+..|+||+|+......|.+|++|.+.+|.+||+...||++
T Consensus 164 ~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~Hslv 243 (1267)
T KOG0783|consen 164 SSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLV 243 (1267)
T ss_pred CChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEE
Confidence 3566666654 44567899999999999999999999999999999998888999999999999999999999999999
Q ss_pred EeCCCCceecCCCCCCCCCccCCC
Q psy15270 82 WTAPPLPPHTPGHTPSSSLRLGLP 105 (506)
Q Consensus 82 l~~~G~vy~~WG~~~n~~GqLG~~ 105 (506)
||.+|-|| +||. |..+|||+.
T Consensus 244 LT~~g~Vy-s~Gl--N~~hqLG~~ 264 (1267)
T KOG0783|consen 244 LTKFGSVY-SWGL--NGSHQLGLS 264 (1267)
T ss_pred EeecceEE-Eeec--CcccccCCc
Confidence 99999999 9999 999999953
No 16
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.66 E-value=8.8e-19 Score=167.11 Aligned_cols=205 Identities=27% Similarity=0.409 Sum_probs=159.7
Q ss_pred HHHHHHhcCCCCCceEeCCCCCCCCCCCcceEEeCCCC-------CCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhh
Q psy15270 258 TEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDL-------SESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLV 330 (506)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~~~~p~~-------~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~ 330 (506)
+++++++++++.+||..+++.. .+.++|.. .....+..+|+++|+++|.|++++.++++++++.+
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~ 72 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNG--------LFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAF 72 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTC--------EEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHH
T ss_pred CHHHHHhcCccCCCceEcCCCC--------EEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHH
Confidence 4689999999999997776543 36676652 22456889999999999999999999999999999
Q ss_pred hhhhc-ccCCCcCccccchHHHHHHHHHHHhcccCCCCcCcccccccCcceeeecC--C--CCccccccCCCceeeeecc
Q psy15270 331 WKLIV-QEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASW--T--GRITPIVTGGQSVPLTFAN 405 (506)
Q Consensus 331 ~~~~~-~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~--g~~~~l~~~g~~~~v~~~n 405 (506)
|+.++ +.+++++|+.++|+.+++++..+++.+......+++.. .|..... . .+.++++++|.++.|+.+|
T Consensus 73 ~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l-----~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N 147 (317)
T PF00632_consen 73 WKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDL-----TFSVPSSSGGGQVEEVELIPGGSNIPVTNEN 147 (317)
T ss_dssp HHHHT-T----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTE-----BSEEEEEECTTEEEEEESSTTGGGSB-TTTT
T ss_pred HHHHhcCCCCccccchhcCchhhcchhhheeccccccceeecce-----EEEEecccccCceeEeeecCCCcccccchhh
Confidence 99999 99999999999999999999999976544332223322 3432211 1 2468999999999999999
Q ss_pred chhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcccccEEeec-cCCCcEEEEEecCCc-ceEEEecCCcE
Q psy15270 406 RLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVA-LNKVHVESVSCGLNH-TVCIADKGKAV 483 (506)
Q Consensus 406 ~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~~~P~~v~~-l~~~~v~~i~~G~~h-t~~~~~~~g~v 483 (506)
+.+|+...+.+.....+ ......+.+|+..++|...+. |+++++..+.||..+ +++..+++.+.
T Consensus 148 ~~eyv~~~~~~~l~~~~--------------~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~ 213 (317)
T PF00632_consen 148 KEEYVRLLAQYRLNESV--------------KKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTR 213 (317)
T ss_dssp HHHHHHHHHHHHHTTTT--------------HHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEE
T ss_pred hhHHHHhhhhhhccccc--------------chhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhccc
Confidence 99999999998876667 777888999999999999888 999999999999999 77888888888
Q ss_pred EEEEcC
Q psy15270 484 YAFGDG 489 (506)
Q Consensus 484 y~wG~n 489 (506)
|.-|.+
T Consensus 214 ~~~g~~ 219 (317)
T PF00632_consen 214 YEGGYT 219 (317)
T ss_dssp EESSS-
T ss_pred chhccc
Confidence 886655
No 17
>KOG1428|consensus
Probab=99.63 E-value=1.1e-15 Score=155.98 Aligned_cols=92 Identities=27% Similarity=0.411 Sum_probs=88.1
Q ss_pred CCCCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEEEeCCCCceec
Q psy15270 12 FKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHT 91 (506)
Q Consensus 12 l~~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~al~~~G~vy~~ 91 (506)
.-+.++++|+||..|+.+|.+|++||.||+|-.||||+|++.+..+|++|..+++..|+||+||.+||+.+..||.|| +
T Consensus 764 ~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVF-T 842 (3738)
T KOG1428|consen 764 PHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVF-T 842 (3738)
T ss_pred CcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEE-E
Confidence 446789999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCCCCCccCCCC
Q psy15270 92 PGHTPSSSLRLGLPQ 106 (506)
Q Consensus 92 WG~~~n~~GqLG~~~ 106 (506)
+|. -.+|||+.|.
T Consensus 843 FGa--F~KGQL~RP~ 855 (3738)
T KOG1428|consen 843 FGA--FGKGQLARPA 855 (3738)
T ss_pred ecc--ccCccccCcc
Confidence 999 9999999863
No 18
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.61 E-value=3.7e-16 Score=104.83 Aligned_cols=50 Identities=40% Similarity=0.616 Sum_probs=47.2
Q ss_pred CCCEEEEeCCCCCCCC-CCCCCCcCcCEEeccCCCCCEEEEEcCCCceEEE
Q psy15270 33 TGQVFAWGNNSDAQLG-LGNQINYREPQLVLALSNKNIRQVSAGRSHSAAW 82 (506)
Q Consensus 33 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~al 82 (506)
||+||+||+|.+|||| .++.....+|++|+.+.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 7777789999999999988999999999999997
No 19
>KOG0940|consensus
Probab=99.58 E-value=6.1e-17 Score=150.91 Aligned_cols=241 Identities=17% Similarity=0.166 Sum_probs=199.3
Q ss_pred CCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceE
Q psy15270 210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRY 289 (506)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~ 289 (506)
.+.++|.++|++++..++.+++ +...+.|.+|.+.|.||+.|||+..++.+.+++.+.+|-...+. .+.
T Consensus 22 ~~~~~~e~~f~~iM~~~~~~~~---~~l~~~~~~ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~--------~tl 90 (358)
T KOG0940|consen 22 DRDHLLEDSFNQIMNPKPSDLQ---KRLMREFKGEEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKD--------YTL 90 (358)
T ss_pred chhhhHHHHHHHHhCCCchhhh---hcceeecccccccccCCCCcceeeeeccccCCcceeeeeecccc--------ccc
Confidence 7889999999999999999977 67789999999999999999999999999999988888766542 357
Q ss_pred EeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCCcC
Q psy15270 290 ILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEA 369 (506)
Q Consensus 290 ~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~~ 369 (506)
+++|.+..+++++..|.|+|+++|+|+.+...++.. ..+||+.+.+..+++.|.+.+|+.+++++.++++++...
T Consensus 91 q~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en~~~~---- 165 (358)
T KOG0940|consen 91 WLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIRENDPTN---- 165 (358)
T ss_pred ccCCccCCCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccCCccc----
Confidence 889988888999999999999999999999988887 999999999999999999999999999999999877554
Q ss_pred cccccccCcceeeecCCCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcc
Q psy15270 370 NFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNW 449 (506)
Q Consensus 370 ~~~~~~~~~~f~~~~~~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~ 449 (506)
.+....+...+ ..-...+++++|.++.|+.+|+.+|+...+. .....+ ..++..+..++..
T Consensus 166 ~~~f~~~~~~~----g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~--------------~~q~~~l~~~~~~ 226 (358)
T KOG0940|consen 166 DLTFSVESEVL----GQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGI--------------QEQLKALLQGFNE 226 (358)
T ss_pred chhhhcchhhc----CCccceeecCCCcccccccccHHHHHHHHHH-HHHHHH--------------HHHHHHHhccccc
Confidence 11111111111 1124567999999999999999999987766 111233 4555666677788
Q ss_pred cccEEeec-cCCCcEEEEEecCCcceEEEecCCcEEE
Q psy15270 450 KVPERVVA-LNKVHVESVSCGLNHTVCIADKGKAVYA 485 (506)
Q Consensus 450 ~~P~~v~~-l~~~~v~~i~~G~~ht~~~~~~~g~vy~ 485 (506)
..|+.... +...+.+.+.||...+++..++.++.|-
T Consensus 227 ~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~ 263 (358)
T KOG0940|consen 227 LLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYR 263 (358)
T ss_pred cCCcccccccchhhHHHHhcCCcccchhHHhhhcccc
Confidence 88999888 8888999999999999888888887766
No 20
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.49 E-value=2.8e-14 Score=82.27 Aligned_cols=30 Identities=37% Similarity=0.798 Sum_probs=26.4
Q ss_pred EEEEEcCCCceEEEecCCCEEEEeCCCCCC
Q psy15270 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQ 46 (506)
Q Consensus 17 i~~va~G~~Ht~al~~~G~vy~wG~n~~Gq 46 (506)
|++||||..|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 21
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.33 E-value=4.6e-13 Score=77.17 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=26.3
Q ss_pred EEEEEcCCCceEEEeCCCCceecCCCCCCCCCc
Q psy15270 69 IRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLR 101 (506)
Q Consensus 69 i~~Ia~G~~hs~al~~~G~vy~~WG~~~n~~Gq 101 (506)
|++||||.+||+||+++|+|| +||. |.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~-~wG~--n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVY-CWGD--NNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEE-EEE----TTST
T ss_pred CEEEEecCCEEEEEEcCCCEE-EEcC--CcCCC
Confidence 789999999999999999999 9999 99998
No 22
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=8.6e-12 Score=83.47 Aligned_cols=49 Identities=41% Similarity=0.830 Sum_probs=45.2
Q ss_pred CCcEEEEecCCCCccc-CCCCCcccccEEeeccCCCcEEEEEecCCcceE
Q psy15270 427 NGYLYTFGNGDYGRLG-HGTTMNWKVPERVVALNKVHVESVSCGLNHTVC 475 (506)
Q Consensus 427 ~G~v~~wG~n~~gqlg-~~~~~~~~~P~~v~~l~~~~v~~i~~G~~ht~~ 475 (506)
||+||+||.|.+|||| ..+......|+++..+...++++|+||..|+.+
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~ 50 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLA 50 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEE
Confidence 7999999999999999 788888899999999888999999999999843
No 23
>KOG0943|consensus
Probab=98.79 E-value=4.3e-09 Score=107.64 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=136.3
Q ss_pred eEEeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCC
Q psy15270 288 RYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVT 367 (506)
Q Consensus 288 ~~~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~ 367 (506)
.|.|.+... .+..+..|+-+|+++|+++..+...++.|+..++|.+++.++.+.|+..+||.++.+|..+-......-.
T Consensus 2729 FYtPkiGkg-a~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd~ 2807 (3015)
T KOG0943|consen 2729 FYTPKIGKG-AEARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSDA 2807 (3015)
T ss_pred ccCCCCCCC-cHHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcccc
Confidence 466777666 7889999999999999999999999999999999999999999999999999999999998765443222
Q ss_pred cCcccccccCcceeee---cCCCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCC
Q psy15270 368 EANFPEIIPLECFEGA---SWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHG 444 (506)
Q Consensus 368 ~~~~~~~~~~~~f~~~---~~~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~ 444 (506)
+..|..+- ..+..- ...+..++|+|+|.+++|+.+|..+||.++....+--.. ..-.-+++
T Consensus 2808 DadFS~md--~aa~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~--------------~i~feAiR 2871 (3015)
T KOG0943|consen 2808 DADFSAMD--LAAAGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKA--------------EIPFEAIR 2871 (3015)
T ss_pred cchhhHHH--HhhccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheee--------------eccHHHHH
Confidence 33333211 011110 113456899999999999999999999998885443222 55566777
Q ss_pred CCCcccccEEeec-cCCCcEEEEEecCCcceEEEec
Q psy15270 445 TTMNWKVPERVVA-LNKVHVESVSCGLNHTVCIADK 479 (506)
Q Consensus 445 ~~~~~~~P~~v~~-l~~~~v~~i~~G~~ht~~~~~~ 479 (506)
++.-.++|...+. |+.+++..|+||-....+..+.
T Consensus 2872 eGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~ 2907 (3015)
T KOG0943|consen 2872 EGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLI 2907 (3015)
T ss_pred HhHHhhcchhhhcccCHhHheeeeecccceehhHhh
Confidence 8888899999888 9999999999999886555443
No 24
>KOG0941|consensus
Probab=98.25 E-value=1.8e-07 Score=93.94 Aligned_cols=96 Identities=28% Similarity=0.457 Sum_probs=82.7
Q ss_pred hhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcccccEEeeccCCCcEEEEEecCCcceEEEec-------CC
Q psy15270 409 YYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADK-------GK 481 (506)
Q Consensus 409 ~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~~~P~~v~~l~~~~v~~i~~G~~ht~~~~~~-------~g 481 (506)
+-+.++.||.+|++|++..|.++.||.|.+||+|.+..+....|..+.++.+.-+.+|+||..|+ +++.. .+
T Consensus 14 k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs-~~lS~~~~~lt~e~ 92 (850)
T KOG0941|consen 14 KHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHS-FALSSHTVLLTDEG 92 (850)
T ss_pred hhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcc-hhhhhchhhcchhc
Confidence 34678999999999999999999999999999999966655569999998888899999999995 55444 78
Q ss_pred cEEEEEcCCCCcccCCCCCCCCCC
Q psy15270 482 AVYAFGDGEYGKLGLGNTGLKPTP 505 (506)
Q Consensus 482 ~vy~wG~n~~GqLG~g~~~~~~~P 505 (506)
.++++|....||+|.+-+.+..-|
T Consensus 93 ~~fs~Ga~~~~q~~h~~~~~~~~~ 116 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSLTENEVLP 116 (850)
T ss_pred cccccCCccccccccccccccccc
Confidence 999999999999999766655444
No 25
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=81.44 E-value=2.8 Score=24.76 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.2
Q ss_pred CCEEEEEcCC-CceEEEecCCCEEE
Q psy15270 15 IHIVDISVGT-EHVLAVSNTGQVFA 38 (506)
Q Consensus 15 ~~i~~va~G~-~Ht~al~~~G~vy~ 38 (506)
.++++|++|. ...-+|+.+|.+|-
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~ 32 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYR 32 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEE
Confidence 4699999999 88889999999985
No 26
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=79.33 E-value=2.9 Score=24.66 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=20.9
Q ss_pred CEEEEEcCC-CceEEEeCCCCce
Q psy15270 68 NIRQVSAGR-SHSAAWTAPPLPP 89 (506)
Q Consensus 68 ~i~~Ia~G~-~hs~al~~~G~vy 89 (506)
.+++|++|. +.-.+++.+|.+|
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~ 31 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIY 31 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEE
Confidence 799999999 9999999999999
No 27
>KOG0943|consensus
Probab=72.82 E-value=4.3 Score=44.23 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCCC--CcCcCEEe-ccCCCCCEEEEEcCCCceEEEeCCCCc
Q psy15270 12 FKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQI--NYREPQLV-LALSNKNIRQVSAGRSHSAAWTAPPLP 88 (506)
Q Consensus 12 l~~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~--~~~~P~~v-~~l~~~~i~~Ia~G~~hs~al~~~G~v 88 (506)
-+..+++.|.|=++..+||...|++|.|-+...--|-..-+. +...|.-- .++.+.+|+++++-.--.-.+|++|.|
T Consensus 371 ddan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 371 DDANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 355689999999999999999999999998765544432222 24444322 255566999999999999999999999
Q ss_pred eecCCC
Q psy15270 89 PHTPGH 94 (506)
Q Consensus 89 y~~WG~ 94 (506)
- +|=.
T Consensus 451 a-sWlD 455 (3015)
T KOG0943|consen 451 A-SWLD 455 (3015)
T ss_pred h-hHHh
Confidence 9 9944
No 28
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=64.74 E-value=12 Score=42.76 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=59.9
Q ss_pred eeCCCCCCCEEEEE-cCCCceEEEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCce-EEEeCC
Q psy15270 8 HIPAFKNIHIVDIS-VGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHS-AAWTAP 85 (506)
Q Consensus 8 ~v~~l~~~~i~~va-~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs-~al~~~ 85 (506)
.++++++..|..+| .+.+|.++|+++|++-+.= .-| ...|..-++|.+ .|+.|++=..|. .||+.+
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g---------~p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~ 763 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPG---------RPVPLSRPGLSG-EIKDLALDEKQNLYALTST 763 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--CCC---------CCccCCCCCCCc-chhheeeccccceeEecCC
Confidence 46788888888885 7899999999999886653 222 233333346665 899999999865 589999
Q ss_pred CCce----ecCCCCCCCCC
Q psy15270 86 PLPP----HTPGHTPSSSL 100 (506)
Q Consensus 86 G~vy----~~WG~~~n~~G 100 (506)
|++| +.|=. +..|
T Consensus 764 G~Lf~~~k~~WQ~--~~~~ 780 (1774)
T PF11725_consen 764 GELFRLPKEAWQG--NAEG 780 (1774)
T ss_pred CceeecCHHHhhC--cccC
Confidence 9999 66877 7766
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.57 E-value=12 Score=33.50 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCceeeCCCCCCCEEEEEcCCCceEEEecCCCEEEEeCC
Q psy15270 4 TSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNN 42 (506)
Q Consensus 4 ~~P~~v~~l~~~~i~~va~G~~Ht~al~~~G~vy~wG~n 42 (506)
+-|..+- +.+++.+.|-+.+.++||++|.+|+|=-.
T Consensus 5 l~P~i~L---gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 5 LLPPIVL---GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred ccCcEec---CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 3454443 24688899999999999999999999533
No 30
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=59.53 E-value=10 Score=22.95 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.6
Q ss_pred CceEEEecCCCEEEEeCC
Q psy15270 25 EHVLAVSNTGQVFAWGNN 42 (506)
Q Consensus 25 ~Ht~al~~~G~vy~wG~n 42 (506)
.+.++++.+|.||.-|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 567899999999999964
No 31
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.28 E-value=8.5 Score=34.39 Aligned_cols=26 Identities=15% Similarity=-0.086 Sum_probs=24.0
Q ss_pred CEEEEEcCCCceEEEeCCCCceecCCC
Q psy15270 68 NIRQVSAGRSHSAAWTAPPLPPHTPGH 94 (506)
Q Consensus 68 ~i~~Ia~G~~hs~al~~~G~vy~~WG~ 94 (506)
+++.+.|-..+-+|||++|.+| +|=-
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~-vWnl 39 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLY-VWNL 39 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEE-EEEC
Confidence 6888999999999999999999 9955
No 32
>KOG3669|consensus
Probab=57.86 E-value=38 Score=34.24 Aligned_cols=68 Identities=24% Similarity=0.194 Sum_probs=49.3
Q ss_pred CEEEEEcCC-CceEEEecCCCEE-EEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEEEeCCCCce
Q psy15270 16 HIVDISVGT-EHVLAVSNTGQVF-AWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPP 89 (506)
Q Consensus 16 ~i~~va~G~-~Ht~al~~~G~vy-~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~al~~~G~vy 89 (506)
.+++|++|. .-.-||+.+|+|+ =-|--..-+.|.-=. +..+|+... . ++.|+-|..---||+.||.||
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a~--~---~v~iSvGt~t~Waldndg~lw 297 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQAL--E---PVCISVGTQTLWALDNDGNLW 297 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCccccc--c---eEEEEeccceEEEEecCCcEE
Confidence 589999999 6677999999887 556555545442111 233333322 2 999999999999999999999
No 33
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=55.71 E-value=34 Score=18.96 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCceEEEecCCCEE
Q psy15270 15 IHIVDISVGTEHVLAVSNTGQVF 37 (506)
Q Consensus 15 ~~i~~va~G~~Ht~al~~~G~vy 37 (506)
..|..|++|....++.|+.+-|-
T Consensus 2 E~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEE
Confidence 46999999999999999988654
No 34
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=55.24 E-value=7.8 Score=27.44 Aligned_cols=15 Identities=40% Similarity=0.798 Sum_probs=11.2
Q ss_pred cCCCE-EEEeCCCCCC
Q psy15270 32 NTGQV-FAWGNNSDAQ 46 (506)
Q Consensus 32 ~~G~v-y~wG~n~~Gq 46 (506)
.--.| |+||+|++-|
T Consensus 54 AYPsv~waWGSNKnk~ 69 (84)
T PF07312_consen 54 AYPSVYWAWGSNKNKQ 69 (84)
T ss_pred cCcceeeeeccCCCCC
Confidence 34467 9999998654
No 35
>KOG0649|consensus
Probab=47.78 E-value=30 Score=30.91 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=24.8
Q ss_pred EEeeCCcEEEEecCCCCc-ccCCCCCcccccEEee
Q psy15270 423 VVTSNGYLYTFGNGDYGR-LGHGTTMNWKVPERVV 456 (506)
Q Consensus 423 alt~~G~v~~wG~n~~gq-lg~~~~~~~~~P~~v~ 456 (506)
..-.||.||+|=.|+.-. ++...-.....|.++.
T Consensus 76 ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 76 LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred eeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 344579999999998877 7776655566676663
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=38.40 E-value=30 Score=21.92 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=11.6
Q ss_pred CceEEEecCCCEEEEe
Q psy15270 25 EHVLAVSNTGQVFAWG 40 (506)
Q Consensus 25 ~Ht~al~~~G~vy~wG 40 (506)
.|+++...+++||.+|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 6888888889999999
No 37
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.97 E-value=90 Score=22.61 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=28.9
Q ss_pred ceeeCCCCCCCEEEEEcC-CCceEEEecCCCEEEEeCCCCCCCC
Q psy15270 6 GRHIPAFKNIHIVDISVG-TEHVLAVSNTGQVFAWGNNSDAQLG 48 (506)
Q Consensus 6 P~~v~~l~~~~i~~va~G-~~Ht~al~~~G~vy~wG~n~~GqLG 48 (506)
|..|+. +..=..|+|. ..-..+|+.||.+|.-|--..|++=
T Consensus 9 Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 9 PASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp -SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred cccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 444543 3346789999 8888999999999999976677754
No 38
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=29.90 E-value=71 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=20.9
Q ss_pred eCCCCCCCEEEEEcCCCceEEEecCC
Q psy15270 9 IPAFKNIHIVDISVGTEHVLAVSNTG 34 (506)
Q Consensus 9 v~~l~~~~i~~va~G~~Ht~al~~~G 34 (506)
++.+++.+|+++..|-..|++..++|
T Consensus 6 ~~~~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 6 IERAPDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp HCCCGC-EEEEEEEBSSEEEEEETT-
T ss_pred hhhCCCCEEEEEEEcCCEEEEEeCCC
Confidence 34566889999999999999999988
No 39
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.80 E-value=74 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=14.4
Q ss_pred EEcCCCceEEEecCCCEEEEe
Q psy15270 20 ISVGTEHVLAVSNTGQVFAWG 40 (506)
Q Consensus 20 va~G~~Ht~al~~~G~vy~wG 40 (506)
++..+.+..+.+.+|+||+.-
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEE
T ss_pred CEEECCEEEEEcCCCEEEEEe
Confidence 355567888888889998863
No 40
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=26.74 E-value=1.1e+02 Score=20.16 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCceEEEecCCCEEEE
Q psy15270 14 NIHIVDISVGTEHVLAVSNTGQVFAW 39 (506)
Q Consensus 14 ~~~i~~va~G~~Ht~al~~~G~vy~w 39 (506)
+.+++.+.+.+.-.++.+.+|+|=-.
T Consensus 25 GsN~v~v~~~g~~VA~~ta~GkveeY 50 (59)
T PF05862_consen 25 GSNAVAVQVDGGIVAAVTANGKVEEY 50 (59)
T ss_pred CCceEEEeeCCCEEEEEecCCceeee
Confidence 45789999999999999999988544
No 41
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=25.12 E-value=68 Score=37.17 Aligned_cols=71 Identities=14% Similarity=0.342 Sum_probs=53.2
Q ss_pred eCCCCCCCEEEEEcCCCceE-EEecCCCEEE-----EeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEEE
Q psy15270 9 IPAFKNIHIVDISVGTEHVL-AVSNTGQVFA-----WGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAW 82 (506)
Q Consensus 9 v~~l~~~~i~~va~G~~Ht~-al~~~G~vy~-----wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~al 82 (506)
-++|++ .|.+|++-..|.| |++.+|.+|+ |=.+..|- ......+|+..+ .+.+|..+....+|.+.+
T Consensus 739 ~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~----~~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~ 811 (1774)
T PF11725_consen 739 RPGLSG-EIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGD----QMAAKWQKVALP--DEQPVKSLRTNDDNHLSA 811 (1774)
T ss_pred CCCCCc-chhheeeccccceeEecCCCceeecCHHHhhCcccCC----ccccCceeccCC--CCCchhhhhcCCCCceEE
Confidence 345655 7999999999887 9999999996 55555441 112356666666 455899999999999999
Q ss_pred eCCC
Q psy15270 83 TAPP 86 (506)
Q Consensus 83 ~~~G 86 (506)
.-++
T Consensus 812 ~~~d 815 (1774)
T PF11725_consen 812 QIED 815 (1774)
T ss_pred EecC
Confidence 8777
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=24.69 E-value=99 Score=23.94 Aligned_cols=39 Identities=10% Similarity=-0.006 Sum_probs=30.2
Q ss_pred CCCceeeCCCCCCCEEEEEc-CCCceEEEecCCCEEEEeC
Q psy15270 3 GTSGRHIPAFKNIHIVDISV-GTEHVLAVSNTGQVFAWGN 41 (506)
Q Consensus 3 ~~~P~~v~~l~~~~i~~va~-G~~Ht~al~~~G~vy~wG~ 41 (506)
++.|.++..|..-...-|-. ++...++...+|++|+.-+
T Consensus 8 ~~~~~~l~eL~~G~~~~v~v~~g~~I~V~~~~G~~~A~~n 47 (107)
T cd03473 8 SLSPEEVANLKEGINFFRNKEDGKKYIIYKSKSELKACKN 47 (107)
T ss_pred EcCHHHHhcCCCCceEEEEecCCcEEEEEEECCEEEEEcC
Confidence 36788888877766666666 7777778888999999864
No 43
>KOG0883|consensus
Probab=22.44 E-value=51 Score=31.56 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=16.9
Q ss_pred cCCCceEEEecCCCEEEEeC
Q psy15270 22 VGTEHVLAVSNTGQVFAWGN 41 (506)
Q Consensus 22 ~G~~Ht~al~~~G~vy~wG~ 41 (506)
.-..|.+|+...|+||||--
T Consensus 112 T~~sHIvAv~TTGNvy~~ea 131 (518)
T KOG0883|consen 112 TRFSHIVAVRTTGNVYSWEA 131 (518)
T ss_pred cccceEEEEEecCceeeHHH
Confidence 34578999999999999973
No 44
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.38 E-value=1.4e+02 Score=16.30 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=12.7
Q ss_pred ceEEEecCCCEEEEeCC
Q psy15270 26 HVLAVSNTGQVFAWGNN 42 (506)
Q Consensus 26 Ht~al~~~G~vy~wG~n 42 (506)
|.++++.+|++|..=++
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56788889999876543
No 45
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=21.96 E-value=1e+02 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEecCCcceEEEecCCcEEEEEcCC
Q psy15270 465 SVSCGLNHTVCIADKGKAVYAFGDGE 490 (506)
Q Consensus 465 ~i~~G~~ht~~~~~~~g~vy~wG~n~ 490 (506)
.+.||.+...++...+|.+|.|++.+
T Consensus 35 s~Lc~~~v~lvv~sp~gk~~~f~s~s 60 (77)
T cd00265 35 SVLCDAEVALIIFSSSGKLYEFSSPS 60 (77)
T ss_pred eeccCCceeEEEEcCCCceEEecCCC
Confidence 46799999877777788999998765
No 46
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=21.87 E-value=83 Score=24.47 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=18.7
Q ss_pred CCCceEEEecCCCEEEEeCCC
Q psy15270 23 GTEHVLAVSNTGQVFAWGNNS 43 (506)
Q Consensus 23 G~~Ht~al~~~G~vy~wG~n~ 43 (506)
-.+|.+|.|.=|.||.|+.+.
T Consensus 78 ~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 78 DNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred ceEEEEEEcccccEEEEEcCC
Confidence 468999999999999999874
No 47
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=21.20 E-value=2.6e+02 Score=19.44 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=20.6
Q ss_pred CEEEEEcCCCceEEEecCCCEEEEeCCCCC
Q psy15270 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDA 45 (506)
Q Consensus 16 ~i~~va~G~~Ht~al~~~G~vy~wG~n~~G 45 (506)
+.+++=+-+..+++|++.|.-|+|-.+...
T Consensus 26 P~~n~LsNg~y~~mvt~~G~GySw~~~~~~ 55 (66)
T PF06204_consen 26 PWVNVLSNGSYGVMVTNSGSGYSWAKNSRD 55 (66)
T ss_dssp --EEEE-SSSEEEEEETTSBEEEEES-TTT
T ss_pred CEEEEeeCCcEEEEEcCCCceeecccccCc
Confidence 456665666777799999999999877543
No 48
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.05 E-value=1.9e+02 Score=21.05 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=29.2
Q ss_pred ccEEeeccCCCcEEEEEecCCcceEEEecCCcEEEEEcCCCCcc
Q psy15270 451 VPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKL 494 (506)
Q Consensus 451 ~P~~v~~l~~~~v~~i~~G~~ht~~~~~~~g~vy~wG~n~~GqL 494 (506)
.|..+.. +..=..|.|..+-..+++.++|.+|+-+--+.|++
T Consensus 8 ~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 8 HPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp --SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred ccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4555544 33457899998887899999999999997777765
No 49
>KOG1034|consensus
Probab=20.72 E-value=2.2e+02 Score=26.99 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCc--eEEEeCCCCceecCCC
Q psy15270 29 AVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSH--SAAWTAPPLPPHTPGH 94 (506)
Q Consensus 29 al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~h--s~al~~~G~vy~~WG~ 94 (506)
+..+.|+||.|--. +.+....|+......+..|.|.+-..+- -+++.+||.|| .|-.
T Consensus 324 ~gnq~g~v~vwdL~--------~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw-rwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLD--------NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW-RWDR 382 (385)
T ss_pred hccCCCcEEEEECC--------CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEE-EEEe
Confidence 45678999999732 1222355666666666778887766544 45667999999 8843
No 50
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=20.26 E-value=1.2e+02 Score=20.27 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=20.8
Q ss_pred cCCCceEEEecCCCEEEEeCCCCCCC
Q psy15270 22 VGTEHVLAVSNTGQVFAWGNNSDAQL 47 (506)
Q Consensus 22 ~G~~Ht~al~~~G~vy~wG~n~~GqL 47 (506)
-|+.|-++++.+|.+|--=.-..|.|
T Consensus 34 fgg~~~i~I~H~Ga~Y~lr~Tr~GKL 59 (63)
T COG4256 34 FGGDGKIIIDHDGAEYLLRKTRAGKL 59 (63)
T ss_pred ccCCCeEEEecCCceEEEeeeeccee
Confidence 58899999999999998766555544
Done!