RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15270
(506 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 132 bits (335), Expect = 1e-34
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 23/217 (10%)
Query: 198 VTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTI 257
+TVRR I RQ+ K+ SDL+ +V+ +GE DAGGV +
Sbjct: 3 ITVRRDR---------ILEDALRQLSKVSSSDLKKV---LEVEFVGEEGIDAGGVTREFF 50
Query: 258 TEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIR 317
T + EL + + L TP+ + NP L F+FLG L G A+
Sbjct: 51 TLVSKELFNPSYGLFRYTPD-------DSGLLYPNPSSFADEDHLKLFRFLGRLLGKALY 103
Query: 318 TKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPL 377
+ L LP S +K ++ +P++ DLE+ D +SL+ + D + I L
Sbjct: 104 EGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGD-EDDLELTFTIEL 162
Query: 378 ECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
+ G + GG+ +P+T N+ +Y + +
Sbjct: 163 DSSFG---GAVTVELKPGGRDIPVTNENKEEYVDLYV 196
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 114 bits (288), Expect = 2e-28
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 229 DLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDR 288
DL+ R +++ GE D GGV + + EL + L +PN D
Sbjct: 1 DLK--KRVLEIEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPN---DYLL---- 51
Query: 289 YILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDND 348
Y + + L +F+F+G + G A+ + L L + +K ++ +PVT DLE D
Sbjct: 52 YPNPRSGFANEEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLD 111
Query: 349 TLYAQSLRAIR-DIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRL 407
+SL+ + + S + F I+ F ++ + GG ++P+T N+
Sbjct: 112 PELYKSLKWLLLNNDTSEELDLTF-SIVLTSEFGQV----KVVELKPGGSNIPVTEENKK 166
Query: 408 QYYEAAI 414
+Y I
Sbjct: 167 EYVHLVI 173
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 91.6 bits (228), Expect = 1e-20
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 258 TEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIR 317
T + EL + L N NP ES FKFLG L G AI
Sbjct: 1 TLLSKELFNPDYGLFFYVTP-------NSGLLWPNPGSPESSADEELFKFLGALIGKAIY 53
Query: 318 TKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPL 377
L LP P WK ++ +P+T DLE+ D +SL+++ ++ E + L
Sbjct: 54 NGILLDLPFPPAFWKKLLGKPITLEDLEEVDPELYRSLKSLLELD-------GDEEELCL 106
Query: 378 ECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
F + ++ G ++P+T N+ +Y +
Sbjct: 107 -TFTVSGEGEGTIELIPNGSNIPVTNENKEEYVNLYV 142
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 67.2 bits (165), Expect = 2e-14
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 427 NGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCI 476
+G +YT+G +YG+LG G + VP+ V L+ V V V+CG +HTV +
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 63.7 bits (156), Expect = 3e-13
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 34 GQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAW 82
G+V+ WG N QLGLG++ + PQLV LS + QV+ G SH+ A
Sbjct: 2 GRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 483 VYAFGDGEYGKLGLGNTGLKPTPQ 506
VY +G EYG+LGLG+ PQ
Sbjct: 4 VYTWGRNEYGQLGLGDEEDVLVPQ 27
Score = 28.3 bits (64), Expect = 0.95
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAV 30
+ + + +V ++ G H +A+
Sbjct: 27 QLVEGLSGVRVVQVACGASHTVAL 50
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 67.9 bits (166), Expect = 4e-12
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
I+ G HS ++ +G LY FG GD G+LG + V + +E V+CG +H
Sbjct: 345 ISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHN 404
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGN 498
+ D G VY++G GE+G LG G
Sbjct: 405 IARTDDGS-VYSWGWGEHGNLGNGP 428
Score = 57.5 bits (139), Expect = 7e-09
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKV-HVESVSCGLN 471
+A G H +T+ G +Y +G+ G+LG T+ K+ V + +++ V+CG +
Sbjct: 235 QLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKD 294
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPT 504
H++ + D+ +YA+G +G+LG G+ G
Sbjct: 295 HSLAL-DEDGEIYAWGVNIFGQLGAGSDGEIGA 326
Score = 53.3 bits (128), Expect = 2e-07
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 3 GTSGRHIPAFKNIH-IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLV 61
TS + P IV ++ G +H++A++N G+V+ WG+N QLG + LV
Sbjct: 218 KTSIQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLV 277
Query: 62 -LALSNKNIRQVSAGRSHSAAWTAP 85
+ +NI+ V+ G+ HS A
Sbjct: 278 GDPFAIRNIKYVACGKDHSLALDED 302
Score = 52.5 bits (126), Expect = 3e-07
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 399 VPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGT-----TMNWKVPE 453
V FA R Y +ACG HS + +G +Y +G +G+LG G+ + K P
Sbjct: 277 VGDPFAIRNIKY---VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTK-PN 332
Query: 454 RVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLG 495
L+ V + S+S G +H++ + G +YAFG G+ G+LG
Sbjct: 333 YKQLLSGVTICSISAGESHSLILRKDGT-LYAFGRGDRGQLG 373
Score = 48.3 bits (115), Expect = 6e-06
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 21/109 (19%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMN--------------------WKVPE 453
IACG HS + +G LY++G+ D G LG + +KVP
Sbjct: 109 IACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPG 168
Query: 454 RVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLK 502
A + + V ++CG +V + G+ VY++G G+LG G+
Sbjct: 169 GSSAKSHLRVVKLACGWEISVILTADGR-VYSWGTFRCGELGQGSYKNS 216
Score = 47.5 bits (113), Expect = 1e-05
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMN---WKVPERVVALNKVHVESVSCG 469
+ACG++ S ++T++G +Y++G G LG G+ N + + + K + ++ G
Sbjct: 180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAG 239
Query: 470 LNHTVCIADKGKAVYAFGDGEYGKLG 495
+H + + ++GK VY +G + G+LG
Sbjct: 240 ADHLIALTNEGK-VYGWGSNQKGQLG 264
Score = 46.8 bits (111), Expect = 2e-05
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 11 AFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYR----EPQLVLALSN 66
F +I ++ G +H LA+ G+++AWG N QLG G+ +P LS
Sbjct: 280 PFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSG 339
Query: 67 KNIRQVSAGRSHSAAWTAP 85
I +SAG SHS
Sbjct: 340 VTICSISAGESHSLILRKD 358
Score = 44.1 bits (104), Expect = 1e-04
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 11 AFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIR 70
+ I IS G H L + G ++A+G QLG+ +I +
Sbjct: 336 LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLE 395
Query: 71 QVSAGRSHSAA 81
QV+ G H+ A
Sbjct: 396 QVACGTHHNIA 406
Score = 40.2 bits (94), Expect = 0.002
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 10 PAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGN-QINYREPQLV--LALSN 66
I + +H + V++WG+N +LGLGN + PQL +
Sbjct: 44 IPIPWIIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDK 103
Query: 67 KNIRQVSAGRSHSAA 81
+I +++ G +HS
Sbjct: 104 ASIIKIACGGNHSLG 118
Score = 39.8 bits (93), Expect = 0.003
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 13 KNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLG----------------LGNQINYR 56
I+ I+ G H L + + G +++WG+N D LG +
Sbjct: 102 DKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELES 161
Query: 57 EPQLV----LALSNKNIRQVSAGRSHSAAWTAPPL 87
P V A S+ + +++ G S TA
Sbjct: 162 TPFKVPGGSSAKSHLRVVKLACGWEISVILTADGR 196
Score = 38.7 bits (90), Expect = 0.006
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 15 IHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQ 52
I + ++ GT H +A ++ G V++WG LG G +
Sbjct: 392 IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429
Score = 35.2 bits (81), Expect = 0.072
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 419 KHSAVVTSNGYLYTFGNGDYGRLGHGT-TMNWKVPERVVAL--NKVHVESVSCGLNHTVC 475
KH+ ++ +Y++G+ LG G P+ +K + ++CG NH++
Sbjct: 59 KHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLG 118
Query: 476 IADKGKAVYAFGDGEYGKLG 495
+ D +Y++GD + G LG
Sbjct: 119 L-DHDGNLYSWGDNDDGALG 137
Score = 34.4 bits (79), Expect = 0.13
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLG---NQINYREPQLVLALSNKNIRQVS 73
+V ++ G E + ++ G+V++WG +LG G N L + K I Q++
Sbjct: 178 VVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLA 237
Query: 74 AGRSHSAAWT 83
AG H A T
Sbjct: 238 AGADHLIALT 247
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 62.5 bits (152), Expect = 3e-10
Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 34/230 (14%)
Query: 191 GKNFGP--SVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADD 248
K F P + VRR + + + +I + L ++ +GE D
Sbjct: 508 AKIFDPYLHIKVRR-----DRVFEDSYREIMDESGDDLKKTLE-------IEFVGEEGID 555
Query: 249 AGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYIL--NPDLSESLQSLMHFK 306
AGG+ + + + E+ + L D Y L NP S + + L +FK
Sbjct: 556 AGGLTREWLFLLSKEMFNPDYGLFEYITE---------DLYTLPINPLSSINPEHLSYFK 606
Query: 307 FLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGV 366
FLG + G AI + L + S +K ++ +PV+ DLE D +SL + + + +
Sbjct: 607 FLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLN---NDI 663
Query: 367 TEANFPEIIPLE--CFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
E +E F + R ++ G+++ +T N+ +Y + +
Sbjct: 664 DETILDLTFTVEDDSFGES----RTVELIPNGRNISVTNENKKEYVKKVV 709
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 44.8 bits (107), Expect = 8e-07
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQ 46
+V I+ G H LA+++ G V+ WG+NS Q
Sbjct: 1 VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 39.8 bits (94), Expect = 6e-05
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGR 440
+IA G H+ +TS+G +Y +G+ YG+
Sbjct: 3 SIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 463 VESVSCGLNHTVCIADKGKAVYAFGDGEYG 492
V S++ G HT+ + G VY +GD YG
Sbjct: 1 VVSIAAGDYHTLALTSDGT-VYCWGDNSYG 29
>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor;
Provisional.
Length = 526
Score = 32.4 bits (73), Expect = 0.63
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 70 RQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKP 119
R ++A + +A+WT P P SS R GLP +P H H+Q +P
Sbjct: 291 RHLAAREAEAASWTHRRAYTQAP--WPRSSRRDGLPYLVPIHTPHIQPRP 338
>gnl|CDD|217179 pfam02676, TYW3, Methyltransferase TYW3. The methyltransferase
TYW3 (tRNA-yW- synthesising protein 3) has been
identified in yeast to be involved in wybutosine (yW)
biosynthesis. yW is a complexly modified guanosine
residue that contains a tricyclic base and is found at
the 3' position adjacent the anticodon of phenylalanine
tRNA. TYW3 is an N-4 methylase that methylates yW-86 to
yield yW-72 in an Ado-Met-dependent manner.
Length = 190
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 404 ANRLQYYEAAIACGFKHSAVVTSNG 428
A +L AA GF+ S + + +G
Sbjct: 108 AQKL--LSAARESGFRESGIKSISG 130
>gnl|CDD|204888 pfam12341, DUF3639, Protein of unknown function (DUF3639). This
domain family is found in eukaryotes, and is
approximately 30 amino acids in length. The family is
found in association with pfam00400. There are two
completely conserved residues (E and R) that may be
functionally important.
Length = 27
Score = 27.0 bits (61), Expect = 1.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 413 AIACGFKHSAVVTSNGYLYTF 433
AIA G AV TS GYL F
Sbjct: 6 AIALGSGWVAVATSAGYLRIF 26
>gnl|CDD|218815 pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST). This
family consists of several bacterial
Arylsulfotransferase proteins. Arylsulfotransferase
(ASST) transfers a sulfate group from phenolic sulfate
esters to a phenolic acceptor substrate.
Length = 459
Score = 30.4 bits (69), Expect = 2.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 420 HSAVVTSNGYLYTFGNGDYGRLG 442
H+AV+ NG L F NGD L
Sbjct: 334 HTAVLIPNGELMVFDNGDGRSLE 356
>gnl|CDD|183699 PRK12720, PRK12720, secretion system apparatus protein SsaV;
Provisional.
Length = 675
Score = 30.1 bits (68), Expect = 3.0
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 227 GSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNR 286
+ + P+ + K A+ + E ++ GA PL++R +
Sbjct: 309 AALVAAPAILLRRKKSVVSANGVEAGGSEEGPEG-DSMVPGACPLMLRLAPTLHS----- 362
Query: 287 DRYILNPDLSESLQSLMHFKF--LGI-LFGVAIRTKKPLPLPLSPLVWKLIVQEPV 339
DL + +L F F LG+ L V I L + L+ QEPV
Sbjct: 363 ------ADLIRDIDALRWFLFEDLGVPLPEVNIEVDPELTEKTLTV---LLYQEPV 409
>gnl|CDD|212593 cd11719, FANC, Fanconi anemia ID complex proteins FANCI and FANCD2.
The Fanconi anemia ID complex consists of two subunits,
Fanconi anemia I and Fanconi anemia D2 (FANCI-FANCD2)
and plays a central role in the repair of DNA
interstrand cross-links (ICLs). The complex is activated
via DNA damage-induced phosphorylation by ATR (ataxia
telangiectasia and Rad3-related) and monoubiquitination
by the FA core complex ubiquitin ligase, and it binds to
DNA at the ICL site, recognizing branched DNA
structures. Defects in the complex cause Fanconi anemia,
a cancer predisposition syndrome.
Length = 977
Score = 29.9 bits (66), Expect = 4.4
Identities = 11/153 (7%), Positives = 26/153 (16%), Gaps = 17/153 (11%)
Query: 122 LIRARLKLLNRF---SDLIYQVVRLLPLG--NVDQDWVQCTPYSWLVHPSLRPLFAPRVY 176
+ DL V + + L + +
Sbjct: 51 GLLMLEVHHFPGPLLVDLASDFVGAVREDRLVNGKSLELLPII--LTALATKKEVLACGK 108
Query: 177 TLPLVRSVGKTMLVGKNFG-----PSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLR 231
+ ++ + + P + V S L
Sbjct: 109 GDLNGEE--YKRQLIDTLCSVRWPQRYMIQLTSVFKDVCLTPEEMNLVVAKVLTMFSKLN 166
Query: 232 LPSRAWKVKLLGEGADDAGGVFDDTITEMCGEL 264
L V L + ++ +
Sbjct: 167 LQEIPPLVYQL---LVLSSKGSRRSVLDGIIAF 196
>gnl|CDD|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated.
Length = 603
Score = 29.4 bits (67), Expect = 5.6
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 265 LSGAVPLLVRT-PNGVAD 281
LS VPLL R PNG AD
Sbjct: 326 LSDVVPLLARVYPNGPAD 343
>gnl|CDD|217923 pfam04140, ICMT, Isoprenylcysteine carboxyl methyltransferase
(ICMT) family. The isoprenylcysteine
o-methyltransferase (EC:2.1.1.100) family carry out
carboxyl methylation of cleaved eukaryotic proteins that
terminate in a CaaX motif. In Saccharomyces cerevisiae
this methylation is carried out by Ste14p, an integral
endoplasmic reticulum membrane protein. Ste14p is the
founding member of the isoprenylcysteine carboxyl
methyltransferase (ICMT) family, whose members share
significant sequence homology.
Length = 94
Score = 26.9 bits (60), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 158 PYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVG 191
PY +L HP+ F + T PL+ + T LV
Sbjct: 40 PYRYLRHPNYFGNFIWELATQPLLCNAWYTALVF 73
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 28.6 bits (65), Expect = 9.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 236 AWKVKLLGEGADD-----AGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGY 284
AW + G A D A FD ++ E+ LLSGA L++ P + D
Sbjct: 123 AWLQERYGLTAGDRVLQFASFSFDASVWEIFPPLLSGAT-LVLAPPEVLRDPEA 175
>gnl|CDD|224506 COG1590, COG1590, Uncharacterized conserved protein [Function
unknown].
Length = 208
Score = 28.1 bits (63), Expect = 9.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 410 YEAAIACGFKHSAVVTSN 427
A +CGFKHS + + +
Sbjct: 115 LNIARSCGFKHSGIKSIS 132
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.422
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,426,382
Number of extensions: 2595103
Number of successful extensions: 2102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2084
Number of HSP's successfully gapped: 42
Length of query: 506
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 405
Effective length of database: 6,457,848
Effective search space: 2615428440
Effective search space used: 2615428440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)