RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15270
(506 letters)
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 121 bits (307), Expect = 2e-30
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+A G +H+A VT +G LY +G G YG LG G + VPERV + + V+CG
Sbjct: 176 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 235
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
HT+ ++ G +Y +G +YG+LG G+ P
Sbjct: 236 HTISVSYSGA-LYTYGWSKYGQLGHGDLEDHLIPH 269
Score = 120 bits (304), Expect = 3e-30
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
I+ G HS + S + ++G G+ G+LGHG + P ++ AL+ + SV+CG +H
Sbjct: 20 IISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 473 TVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
TV + G VY++G G++G+LG GN+ TP
Sbjct: 80 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 113
Score = 120 bits (304), Expect = 4e-30
Identities = 32/95 (33%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+ +ACG++H+ V+ +G LYT+G YG+LGHG + +P ++ AL+ + +S G
Sbjct: 228 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR 287
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
HT+ + GK +Y +G ++G++G+GN + +P
Sbjct: 288 HTMALTSDGK-LYGWGWNKFGQVGVGNNLDQCSPV 321
Score = 120 bits (302), Expect = 7e-30
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
IACG H VT G + ++G G+LG G T + VP+++ A + ++ V+ G H
Sbjct: 125 QIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEH 184
Query: 473 TVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
T + + G +Y +G G YG LGLG+ + P+
Sbjct: 185 TAAVTEDGD-LYGWGWGRYGNLGLGDRTDRLVPE 217
Score = 118 bits (298), Expect = 2e-29
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+ I+ G++H+ +TS+G LY +G +G++G G ++ P +V + V VSCG
Sbjct: 280 SQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR 339
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
HT+ + ++ V+A+G G G+LG+G + + P+
Sbjct: 340 HTLAVTERNN-VFAWGRGTNGQLGIGESVDRNFPK 373
Score = 115 bits (289), Expect = 4e-28
Identities = 31/95 (32%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 413 AIACGFKHSAVVTSNGY-LYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
++ CG H+ + +G +Y++G GD+GRLGHG + + P + AL+ + ++ ++CG +
Sbjct: 72 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS 131
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H + + +G+ V ++G + G+LGLG+T PQ
Sbjct: 132 HCLAVTMEGE-VQSWGRNQNGQLGLGDTEDSLVPQ 165
Score = 93.5 bits (233), Expect = 9e-21
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
I A I I I+ G H LAV+ G+V +WG N + QLGLG+ + PQ + A
Sbjct: 113 LPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172
Query: 67 KNIRQVSAGRSHSAA 81
I+ V+AG H+AA
Sbjct: 173 IRIKMVAAGAEHTAA 187
Score = 89.2 bits (222), Expect = 2e-19
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ I AF+ I I ++ G EH AV+ G ++ WG LGLG++ + P+ V +
Sbjct: 165 QKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG 224
Query: 67 KNIRQVSAGRSHSAA 81
+ + V+ G H+ +
Sbjct: 225 EKMSMVACGWRHTIS 239
Score = 88.8 bits (221), Expect = 3e-19
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+ A N I IS G H +A+++ G+++ WG N Q+G+GN ++ P V ++
Sbjct: 271 LEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK 330
Query: 69 IRQVSAGRSHSAAWT 83
+ QVS G H+ A T
Sbjct: 331 VVQVSCGWRHTLAVT 345
Score = 88.5 bits (220), Expect = 4e-19
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
+ + + ++ G H ++VS +G ++ +G + QLG G+ ++ P + ALSN
Sbjct: 217 ERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSN 276
Query: 67 KNIRQVSAGRSHSAA 81
I Q+S G H+ A
Sbjct: 277 SFISQISGGWRHTMA 291
Score = 86.5 bits (215), Expect = 2e-18
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTG-QVFAWGNNSDAQLGLGNQINYREPQLVLALS 65
+ A IV ++ G +H +A S +G +V++WG +LG GN + P + AL
Sbjct: 60 TQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH 119
Query: 66 NKNIRQVSAGRSHSAA 81
I+Q++ G SH A
Sbjct: 120 GIRIKQIACGDSHCLA 135
Score = 85.8 bits (213), Expect = 3e-18
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
++CG++H+ VT ++ +G G G+LG G +++ P+ + AL+ + G +
Sbjct: 333 QVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS----VDGASGQHI 388
Query: 473 TVCIADKGKAVYAFGDG 489
D ++
Sbjct: 389 ESSNIDPSS-GKSWVSP 404
Score = 81.9 bits (203), Expect = 5e-17
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
++ IS G H +A+ + V +WG D QLG G+ + P + AL I V+ G
Sbjct: 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGA 77
Query: 77 SHSAAWT 83
H+ A++
Sbjct: 78 DHTVAYS 84
Score = 78.4 bits (194), Expect = 7e-16
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+ + +V +S G H LAV+ VFAWG ++ QLG+G ++ P+++ ALS
Sbjct: 323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV-- 380
Query: 69 IRQVSAGRSHSAA---------WTAP 85
++G+ ++ W +P
Sbjct: 381 --DGASGQHIESSNIDPSSGKSWVSP 404
Score = 56.9 bits (138), Expect = 6e-09
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 444 GTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKP 503
G + E KV +S G +H+V + V ++G GE G+LG G+ +P
Sbjct: 1 GMAEDMAADEVTAPPRKVL--IISAGASHSVALLSGDI-VCSWGRGEDGQLGHGDAEDRP 57
Query: 504 TPQ 506
+P
Sbjct: 58 SPT 60
Score = 34.9 bits (81), Expect = 0.058
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 18 VDISVGTEHVLAVSNTGQVFAWGNNSD 44
VD + G + + +W + ++
Sbjct: 380 VDGASGQHIESSNIDPSSGKSWVSPAE 406
Score = 29.5 bits (67), Expect = 2.5
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 50 GNQINYREPQLVLALSNKNIRQVSAGRSHSAA 81
G + ++ + + +SAG SHS A
Sbjct: 1 GMAEDMAADEVTAPP--RKVLIISAGASHSVA 30
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 120 bits (304), Expect = 3e-30
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 386 TGRITPI-VTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHG 444
TP + Q V + A+ G KH ++S G +Y++G + G+LGHG
Sbjct: 91 ESVSTPTLLESIQHVFIKKV--------AVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142
Query: 445 TTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPT 504
P + +L + V V+ G H+ C+ G +Y +G G YG+LG ++ +
Sbjct: 143 NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGD-LYTWGKGRYGRLGHSDSEDQLK 201
Query: 505 PQ 506
P+
Sbjct: 202 PK 203
Score = 118 bits (299), Expect = 1e-29
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+ CG + S +T +G +YT+G GDY RLGHG+ + + P +V L V +++ G
Sbjct: 268 VKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL 327
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H VC + G+ VY +GD + G+LG G T P+
Sbjct: 328 HCVCCTEDGE-VYTWGDNDEGQLGDGTTNAIQRPR 361
Score = 116 bits (293), Expect = 8e-29
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSC--G 469
+A G HSA VT+ G LYT+G G YGRLGH + + P+ V AL V ++C G
Sbjct: 162 VDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSG 221
Query: 470 LNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
T+C+ D V+++GDG+YGKLG G + P
Sbjct: 222 DAQTLCLTDDDT-VWSWGDGDYGKLGRGGSDGCKVPM 257
Score = 113 bits (284), Expect = 2e-27
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVE--SVSCG 469
+ G + VT++G LY G G GRLG G T + P + ++ V ++ +V+ G
Sbjct: 56 VQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSG 115
Query: 470 LNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
H + ++ +G+ VY++G+ E GKLG GN P+
Sbjct: 116 GKHCLALSSEGE-VYSWGEAEDGKLGHGNRSPCDRPR 151
Score = 112 bits (282), Expect = 2e-27
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
A G + +T + ++++G+GDYG+LG G + KVP ++ +L + V V CG
Sbjct: 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQF 276
Query: 473 TVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+V + G VY +G G+Y +LG G+ P+
Sbjct: 277 SVALTKSGA-VYTWGKGDYHRLGHGSDDHVRRPR 309
Score = 110 bits (276), Expect = 2e-26
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
+ + +G +Y +G+ G+LG KVP AL + + G
Sbjct: 6 HHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTL 65
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ GK +YA G G G+LG+G T TP
Sbjct: 66 FAVTADGK-LYATGYGAGGRLGIGGTESVSTPT 97
Score = 94.6 bits (236), Expect = 3e-21
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
R + + ++ I+ G+ H + + G+V+ WG+N + QLG G + P+LV AL
Sbjct: 309 RQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQG 368
Query: 67 KNIRQVSAGRSHSAAWT 83
K + +V+ G +H+ AW+
Sbjct: 369 KKVNRVACGSAHTLAWS 385
Score = 90.8 bits (226), Expect = 6e-20
Identities = 27/67 (40%), Positives = 36/67 (53%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
AIA G H T +G +YT+G+ D G+LG GTT + P V AL V V+CG
Sbjct: 320 IAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSA 379
Query: 472 HTVCIAD 478
HT+ +
Sbjct: 380 HTLAWST 386
Score = 88.4 bits (220), Expect = 4e-19
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
I + + +V + G++ +A++ +G V+ WG +LG G+ + R P+ V L K
Sbjct: 259 IDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318
Query: 69 IRQVSAGRSHSAAWTA 84
+ ++ G H T
Sbjct: 319 VIAIATGSLHCVCCTE 334
Score = 88.1 bits (219), Expect = 4e-19
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 7 RHIPAFKNIHI--VDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLAL 64
+ + +++ I V ++ G +H LA+S+ G+V++WG D +LG GN+ P+++ +L
Sbjct: 97 TLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESL 156
Query: 65 SNKNIRQVSAGRSHSAA 81
+ V+AG +HSA
Sbjct: 157 RGIEVVDVAAGGAHSAC 173
Score = 86.5 bits (215), Expect = 2e-18
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
R I + + I +VD++ G H V+ G ++ WG +LG + + +P+LV AL
Sbjct: 151 RVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210
Query: 67 KNIRQVS--AGRSHSAA 81
+ ++ +G + +
Sbjct: 211 HRVVDIACGSGDAQTLC 227
Score = 85.8 bits (213), Expect = 3e-18
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 7 RHIPAFKNIHIVDISVGT--EHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLAL 64
+ + A + +VDI+ G+ L +++ V++WG+ +LG G + P + +L
Sbjct: 203 KLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262
Query: 65 SNKNIRQVSAGRSHSAA 81
+ + +V G S A
Sbjct: 263 TGLGVVKVECGSQFSVA 279
Score = 83.4 bits (207), Expect = 1e-17
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
A + V + G + + AV+ G+++A G + +LG+G + P L+ ++ +
Sbjct: 45 TPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQH 104
Query: 67 KNIR--QVSAGRSHSAAWTA 84
I+ V++G H A ++
Sbjct: 105 VFIKKVAVNSGGKHCLALSS 124
Score = 80.4 bits (199), Expect = 2e-16
Identities = 15/67 (22%), Positives = 23/67 (34%)
Query: 15 IHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSA 74
+H L +G ++ WG+N QLG + P AL+ Q+
Sbjct: 1 MHHHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG 60
Query: 75 GRSHSAA 81
G A
Sbjct: 61 GEQTLFA 67
Score = 48.4 bits (116), Expect = 3e-06
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+H + G +Y +G G+LG P
Sbjct: 1 MHHHHHHSSGRENLYFQGSGT-IYGWGHNHRGQLGGIEGAKVKVPT 45
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 114 bits (287), Expect = 9e-28
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTT-----------MNWKVPERVVALNK 460
+IA G H ++T+ G ++T G + G+LG + + P +++
Sbjct: 182 CSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA 241
Query: 461 VHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
E++ T + + ++A G + +L G +
Sbjct: 242 KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALT 287
Score = 109 bits (275), Expect = 3e-26
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
IA G H+ ++T++ G +YGRLG G + +V + SV CG
Sbjct: 297 RHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV 356
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + GK +Y++G G +LG+G+ + P
Sbjct: 357 CSYAVTIDGK-LYSWGSGVNNQLGVGDGDDELEPI 390
Score = 107 bits (270), Expect = 2e-25
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
I+ G H+ V+T +G +Y+FG D G LG T+ + + + +S G +H
Sbjct: 79 DISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSH 138
Query: 473 TVCIADKGKAVYAFGDGE--YGKLGLGNTGLKPTP 505
+ C+ + G+ V+A+G +G +GL G K TP
Sbjct: 139 SACLLEDGR-VFAWGSFRDSHGNMGLTIDGNKRTP 172
Score = 100 bits (250), Expect = 6e-23
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNG--DYGRLGHGTTMNWKVPERVVALNKVHVESVSCGL 470
I+ G HSA + +G ++ +G+ +G +G N + P ++ S++ G
Sbjct: 131 CISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVC--CSIASGA 188
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+H V + GK V+ G E G+LG +
Sbjct: 189 DHLVILTTAGK-VFTVGCAEQGQLGRLSERSISGEG 223
Score = 99.7 bits (249), Expect = 7e-23
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNW-KVPERVVALNKVHVESVSCGL 470
A IA + T G + GNGD G+LG G + K V + +S G
Sbjct: 27 ARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAV--DISAGG 84
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLGLGNT--GLKPTPQ 506
H + + G +Y+FG + G LG + G + P
Sbjct: 85 MHNLVLTKSGD-IYSFGCNDEGALGRDTSEDGSESKPD 121
Score = 99.7 bits (249), Expect = 8e-23
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 412 AAIACGFKHSAVVTSN-GYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGL 470
AI + + S ++ G ++ +L H T + K + ++ G
Sbjct: 245 EAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRHIAGGQ 303
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
+HTV + K G EYG+LGLG+
Sbjct: 304 HHTVILTTDLK-CSVVGRPEYGRLGLGDVKDVVEK 337
Score = 87.8 bits (218), Expect = 6e-19
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVV--ALNKVHVESVSCGL 470
++ CG S VT +G LY++G+G +LG G + P VV H+ S G
Sbjct: 350 SVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGG 409
Query: 471 NHTVCIADKGK 481
H + + K
Sbjct: 410 QHAIFLVKADK 420
Score = 86.2 bits (214), Expect = 2e-18
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLV--LALSNKNIRQVS 73
IV + G AV+ G++++WG+ + QLG+G+ + EP +V K++ S
Sbjct: 347 KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLAS 406
Query: 74 AGRSHSAAWT 83
G H+
Sbjct: 407 GGGQHAIFLV 416
Score = 80.5 bits (199), Expect = 2e-16
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
VDIS G H L ++ +G ++++G N + LG + E + L +SAG
Sbjct: 77 AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD 136
Query: 77 SHSAA 81
SHSA
Sbjct: 137 SHSAC 141
Score = 77.4 bits (191), Expect = 2e-15
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYR-----------E 57
I + I+ G +H++ ++ G+VF G QLG ++ +
Sbjct: 173 IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLR 232
Query: 58 PQLVLALSNKNIRQVSAGRSHSAAWTA 84
P ++ K + A + +
Sbjct: 233 PTQLIITRAKPFEAIWATNYCTFMRES 259
Score = 77.0 bits (190), Expect = 2e-15
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
+ IS G H + G+VFAWG+ D+ +G I+ + + + +++G
Sbjct: 129 ALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA 188
Query: 77 SHSAAWTA 84
H T
Sbjct: 189 DHLVILTT 196
Score = 75.1 bits (185), Expect = 1e-14
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 2 SGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLV 61
+ +G I+ E + G V GN QLGLG I R +L
Sbjct: 11 NNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILER-KRLS 69
Query: 62 LALSNKNIRQVSAGRSHSAA 81
+ +SAG H+
Sbjct: 70 PVAGIPDAVDISAGGMHNLV 89
Score = 74.3 bits (183), Expect = 2e-14
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
I I+ G H + ++ + G +LGLG+ + E ++ + I V G
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE 355
Query: 77 SHSAAWTA 84
S A T
Sbjct: 356 VCSYAVTI 363
Score = 71.2 bits (175), Expect = 2e-13
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 2/76 (2%)
Query: 9 IPAFKNIHIVDISVGTEHVLAV-SNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNK 67
+ + I S T ++A G N+ QL + + K
Sbjct: 236 LIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI-KTELK 294
Query: 68 NIRQVSAGRSHSAAWT 83
+IR ++ G+ H+ T
Sbjct: 295 DIRHIAGGQHHTVILT 310
Score = 60.0 bits (146), Expect = 7e-10
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 434 GNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGK 493
G+ L + E K ++ L G V G+G+ G+
Sbjct: 1 GSPRRKALTNNNN----AGEAEQQPPKAKRARIAFHLELPKRRTVLGN-VLVCGNGDVGQ 55
Query: 494 LGLGNTGLKPTP 505
LGLG L+
Sbjct: 56 LGLGEDILERKR 67
Score = 31.5 bits (72), Expect = 0.59
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 4/45 (8%)
Query: 40 GNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTA 84
G+ L N E Q A +++ T
Sbjct: 1 GSPRRKALTNNNNAGEAEQQPPKA----KRARIAFHLELPKRRTV 41
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 110 bits (276), Expect = 2e-26
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALN--KVHVESVSCG 469
CG + ++ G++Y FG +Y +LG T + +P+ + + S G
Sbjct: 235 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 294
Query: 470 LNHTVCIADKGKAVYAFGDGEYGKLGLGNTGL-KPTPQ 506
+HTVC+ +GK Y+ G EYG+LGLG K P
Sbjct: 295 QHHTVCMDSEGK-AYSLGRAEYGRLGLGEGAEEKSIPT 331
Score = 108 bits (271), Expect = 1e-25
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTM-NWKVPERVVALNKVHVESVSCGL 470
+ G H+ + S G Y+ G +YGRLG G +P + L V SV+CG
Sbjct: 289 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV--SSVACGA 346
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + G+ V+A+G G +LG G +P
Sbjct: 347 SVGYAVTKDGR-VFAWGMGTNYQLGTGQDEDAWSPV 381
Score = 107 bits (269), Expect = 2e-25
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTT-----------MNWKVPERVVA--- 457
+A G H ++T++G LYT G G+ G+LG VP+ V+
Sbjct: 167 VKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSR 226
Query: 458 --LNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
V + CG T I+ +G VY FG Y +LG T PQ
Sbjct: 227 GSRGHVRFQDAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGTESCFIPQ 276
Score = 101 bits (253), Expect = 2e-23
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
G H+ ++ +G +Y+FG D G LG T++ + V VS G +H
Sbjct: 63 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSH 122
Query: 473 TVCIADKGKAVYAFGDGE--YGKLGLGNTGLK-PTPQ 506
T + D G+ V+ +G G +GL K P
Sbjct: 123 TAALTDDGR-VFLWGSFRDNNGVIGLLEPMKKSMVPV 158
Score = 100 bits (252), Expect = 3e-23
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHG-TTMNWKVPERVVALNKVHVESVSCGLN 471
+ H + T G + T G GD G+LG G M K P V V G
Sbjct: 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVV--QAEAGGM 69
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNT--GLKPTP 505
HTVC++ G+ VY+FG + G LG + G + P
Sbjct: 70 HTVCLSKSGQ-VYSFGCNDEGALGRDTSVEGSEMVP 104
Score = 97.4 bits (243), Expect = 5e-22
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNG--DYGRLGHGTTMNW-KVPERVVALNKVHVESVSCG 469
++ G H+A +T +G ++ +G+ + G +G M VP +V V V+ G
Sbjct: 115 QVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPV--VKVASG 172
Query: 470 LNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+H V + G +Y G GE G+LG
Sbjct: 173 NDHLVMLTADGD-LYTLGCGEQGQLGRVPELFANRGG 208
Score = 87.0 bits (216), Expect = 1e-18
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVV--ALNKVHVESVSCGL 470
++ACG VT +G ++ +G G +LG G + P ++ L V SVS G
Sbjct: 341 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 400
Query: 471 NHTVCIADKG 480
HTV +
Sbjct: 401 QHTVLLVKDK 410
Score = 82.8 bits (205), Expect = 3e-17
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLV--LALSN 66
I + ++ G AV+ G+VFAWG ++ QLG G + P + L N
Sbjct: 333 ISRLPAV--SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLEN 390
Query: 67 KNIRQVSAGRSHSAAWT 83
+ + VS+G H+
Sbjct: 391 RVVLSVSSGGQHTVLLV 407
Score = 81.6 bits (202), Expect = 7e-17
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
+V G H + +S +GQV+++G N + LG + E + + QVSAG
Sbjct: 61 VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD 120
Query: 77 SHSAAWTA 84
SH+AA T
Sbjct: 121 SHTAALTD 128
Score = 77.0 bits (190), Expect = 2e-15
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 11 AFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN--KN 68
+ ++ D G A+S+ G V+ +G ++ QLG + PQ + + N K+
Sbjct: 228 SRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKS 287
Query: 69 IRQVSAGRSHSAAWTA 84
S G+ H+ +
Sbjct: 288 WVGFSGGQHHTVCMDS 303
Score = 73.9 bits (182), Expect = 2e-14
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 2 SGTSGRHIP------AFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINY 55
GT IP V S G H + + + G+ ++ G +LGLG
Sbjct: 267 PGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE 326
Query: 56 R-EPQLVLALSNKNIRQVSAGRSHSAAWTA 84
+ P L+ L + V+ G S A T
Sbjct: 327 KSIPTLISRLP--AVSSVACGASVGYAVTK 354
Score = 71.2 bits (175), Expect = 2e-13
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 14 NIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLG-NQINYREPQLVLALSNKNIRQV 72
+ V H + G V G QLGLG N + ++P LV ++ Q
Sbjct: 7 DAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQA 64
Query: 73 SAGRSHSAAWTA 84
AG H+ +
Sbjct: 65 EAGGMHTVCLSK 76
Score = 70.4 bits (173), Expect = 3e-13
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGN--NSDAQLGLGNQINY-REPQLVLALSNKNIRQV 72
+V +S G H A+++ G+VF WG+ +++ +GL + P V + +V
Sbjct: 112 KVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD--VPVVKV 169
Query: 73 SAGRSHSAA 81
++G H
Sbjct: 170 ASGNDHLVM 178
Score = 68.9 bits (169), Expect = 9e-13
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 14 NIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQI-----------NYREPQLVL 62
++ +V ++ G +H++ ++ G ++ G QLG ++ P+ V+
Sbjct: 163 DVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVM 222
Query: 63 ALSNK-----NIRQVSAGRSHSAAWTA 84
S + G + A +
Sbjct: 223 LKSRGSRGHVRFQDAFCGAYFTFAISH 249
Score = 54.6 bits (132), Expect = 3e-08
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 454 RVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTG---LKPTP 505
R +S ++H + G V G G+ G+LGLG KP
Sbjct: 1 RRSPPADAIPKSKKVKVSHRSHSTEPGL-VLTLGQGDVGQLGLGENVMERKKPAL 54
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 109 bits (275), Expect = 4e-26
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKV-HVESVSCGL 470
+A G H + G ++ +GNG +LG +++ + HV+ ++ G
Sbjct: 207 VQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGE 266
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
NH + K + ++G ++G+ G+
Sbjct: 267 NHCFALTKDNK-LVSWGLNQFGQCGVSEDVEDGAL 300
Score = 106 bits (267), Expect = 6e-25
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMN----WKVPERVVALNKVHVESVS 467
IA G H +T + L ++G +G+ G + P+R+ + V + S++
Sbjct: 260 KYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIA 319
Query: 468 CGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
G +H++ ++ G +Y+ G + ++G+ L
Sbjct: 320 AGEHHSLILSQDGD-LYSCGRLDMFEVGIPKDNLPEYT 356
Score = 103 bits (259), Expect = 6e-24
Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPER-----VVALNKVHVESVS 467
+KH + ++ +G G LG G K +R + ++ + S +
Sbjct: 14 NAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFA 73
Query: 468 CGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
G HT+ + ++ V+++G + G LG + K +
Sbjct: 74 VGGMHTLALDEESN-VWSWGCNDVGALGRDTSNAKEQLK 111
Score = 102 bits (256), Expect = 1e-23
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHG----TTMNWKVPERVVALNKVHVESVSC 468
+A S + SNG +Y +G G K P +V +K ++ ++
Sbjct: 152 QLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP 211
Query: 469 GLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
G +H + + ++G V+A+G+G+ +LG
Sbjct: 212 GKDHILFLDEEGM-VFAWGNGQQNQLGRKVMERFRLKT 248
Score = 96.4 bits (240), Expect = 1e-21
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLG--------------HGTTMNWKVPERVVA 457
+IA G HS +++ +G LY+ G D +G HG +P ++
Sbjct: 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375
Query: 458 LNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+ K +SV+ G +H+V +A G Y++G GE +GLG
Sbjct: 376 VPK--FKSVAAGSHHSVAVAQNGI-AYSWGFGETYAVGLGPF 414
Score = 87.5 bits (217), Expect = 1e-18
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLV-LALS 65
+P F +IV ++ G +H+L + G VFAWGN QLG +R L
Sbjct: 196 WKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG 255
Query: 66 NKNIRQVSAGRSHSAA 81
++++ +++G +H A
Sbjct: 256 LRHVKYIASGENHCFA 271
Score = 87.1 bits (216), Expect = 1e-18
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 30/123 (24%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVA--------------- 457
+ A G H+ + ++++G D G LG T+ + + + A
Sbjct: 71 SFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELE 130
Query: 458 --------------LNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKP 503
V ++ N + + G+ VYA+G + LG K
Sbjct: 131 STPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE-VYAWGTFRCNEGILGFYQDKI 189
Query: 504 TPQ 506
Q
Sbjct: 190 KIQ 192
Score = 83.3 bits (206), Expect = 3e-17
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYRE-PQLV--LALSNKNIRQV 72
++ G+ H +AV+ G ++WG +GLG + E P + A + NI V
Sbjct: 378 KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILV 437
Query: 73 SAGRSHSAAWTAPP 86
G S +
Sbjct: 438 GCGGQFSVSGGVKL 451
Score = 79.0 bits (195), Expect = 7e-16
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMN-WKVPERV--VALNKVHVESVSCG 469
++A G HS V NG Y++G G+ +G G + +VP R+ A ++ V CG
Sbjct: 381 SVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCG 440
Query: 470 LNHTVCIADK 479
+V K
Sbjct: 441 GQFSVSGGVK 450
Score = 78.3 bits (193), Expect = 1e-15
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQIN----YREPQLVLALSNKNIRQ 71
H+ I+ G H A++ ++ +WG N Q G+ + +P+ + N IR
Sbjct: 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317
Query: 72 VSAGRSHSAA 81
++AG HS
Sbjct: 318 IAAGEHHSLI 327
Score = 75.2 bits (185), Expect = 1e-14
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 12/89 (13%)
Query: 7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQI------------N 54
+ + N+ I I+ G H L +S G +++ G ++G+
Sbjct: 305 KRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKA 364
Query: 55 YREPQLVLALSNKNIRQVSAGRSHSAAWT 83
P + + V+AG HS A
Sbjct: 365 RAVPLPTKLNNVPKFKSVAAGSHHSVAVA 393
Score = 74.8 bits (184), Expect = 2e-14
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQIN----YREPQLVLAL 64
P + +V ++ A+ + G+V+AWG + LG + + P V
Sbjct: 142 PPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTF 201
Query: 65 SNKNIRQVSAGRSHSAA 81
S NI Q++ G+ H
Sbjct: 202 SKYNIVQLAPGKDHILF 218
Score = 74.0 bits (182), Expect = 3e-14
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQL-----VLALSNKNIR 70
HI++ +H+ +F WG S +LGLG +E + L I
Sbjct: 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKII 70
Query: 71 QVSAGRSHSAAWT 83
+ G H+ A
Sbjct: 71 SFAVGGMHTLALD 83
Score = 66.7 bits (163), Expect = 6e-12
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 31/109 (28%)
Query: 7 RHIPAFK--NIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLA- 63
R P I+ +VG H LA+ V++WG N LG + + + A
Sbjct: 57 RLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDAD 116
Query: 64 ----------------------------LSNKNIRQVSAGRSHSAAWTA 84
+ Q++A + S A +
Sbjct: 117 DSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFS 165
Score = 51.3 bits (123), Expect = 4e-07
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 459 NKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+ H+ + H ++ +G G +LGLG
Sbjct: 8 HMSHIINAQEDYKHMYLSVQPLD-IFCWGTGSMCELGLGPL 47
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 79.9 bits (198), Expect = 2e-16
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 220 RQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGV 279
RQV+KM+ DL + +K GE D GGV + + + E+L+ L + +
Sbjct: 40 RQVMKMRPKDLW---KRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRD-- 94
Query: 280 ADTGYNRDRYIL--NPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQE 337
D Y L NPD + + + L +F F+G + G+A+ + + +K ++ +
Sbjct: 95 -------DIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGK 147
Query: 338 PVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQ 397
+T D+E D SL I + ++GV + F + + G + G+
Sbjct: 148 SITLDDMELVDPDLHNSLVWILENDITGVLDHTF--CVEHNAY-GEIIQ---HELKPNGK 201
Query: 398 SVPLTFANRLQY 409
S+P+ N+ +Y
Sbjct: 202 SIPVNEENKKEY 213
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 79.7 bits (197), Expect = 3e-16
Identities = 40/196 (20%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 214 IFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLV 273
IF +++++ DL+ + +K GE D GGV + + E+ + L
Sbjct: 84 IFEDAYQEIMRQTPEDLK---KRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFE 140
Query: 274 RTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKL 333
+ + +NP+ + + L +FKF+G + G+ + ++ L ++K+
Sbjct: 141 YSAY-------DNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKM 193
Query: 334 IVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIV 393
++++ V D+E D SL + + + GV + F E F G T +
Sbjct: 194 MLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGVLDLTF--SADDERF-GEVVT---VDLK 247
Query: 394 TGGQSVPLTFANRLQY 409
G+++ +T N+ +Y
Sbjct: 248 PDGRNIEVTDGNKKEY 263
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 78.7 bits (195), Expect = 4e-16
Identities = 41/202 (20%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 215 FAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVR 274
++ + +DL+ + V+ GE D GGV + + E+ +
Sbjct: 20 LVRLE-MIAMENPADLK---KQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFN-------- 67
Query: 275 TPNGVADTG---YNRDRYIL--NPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPL 329
P D G Y+ + NP S ++ F +GI+ G+AI L + +
Sbjct: 68 -P----DIGMFTYDESTKLFWFNPS---SFETEGQFTLIGIVLGLAIYNNCILDVHFPMV 119
Query: 330 VWKLIVQEPVTFTDLEDNDTLYAQSLRAIR--DIHLSGVTEANFPEIIPLECFEGASWTG 387
V++ ++ + TF DL D+ + QSL+ + + ++ F +I + F
Sbjct: 120 VYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITF-QISQTDLF----GNP 174
Query: 388 RITPIVTGGQSVPLTFANRLQY 409
+ + G +P+T NR ++
Sbjct: 175 MMYDLKENGDKIPITNENRKEF 196
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 77.6 bits (192), Expect = 1e-15
Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 17/191 (8%)
Query: 220 RQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGV 279
R++ + +++ + GE DAGG+ + + E+ + L +P
Sbjct: 63 RELHRKSPEEMKNR---LYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPG-- 117
Query: 280 ADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPV 339
+R Y +NP + L +FKF+G + A+ + L + +K I+ + V
Sbjct: 118 -----DRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSV 172
Query: 340 TFTDLEDNDTLYAQSLRAIRDIHLSGVT-EANFPEIIPLECFEGASWTGRITPIVTGGQS 398
+TD+E D + Q L + + +S + + F ++ F G + + G +
Sbjct: 173 RYTDMESEDYHFYQGLVYLLENDVSTLGYDLTF--STEVQEF-GVAEV---RDLKPNGAN 226
Query: 399 VPLTFANRLQY 409
+ +T N+ +Y
Sbjct: 227 ILVTEENKKEY 237
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 73.4 bits (181), Expect = 3e-14
Identities = 46/191 (24%), Positives = 79/191 (41%), Gaps = 17/191 (8%)
Query: 220 RQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGV 279
+Q++ +K DLR R V GE D GG+ + + E+L+ L
Sbjct: 39 QQIMALKPYDLR---RRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGK-- 93
Query: 280 ADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPV 339
N +NP + + L +F F+G +A+ K + S +K ++ + +
Sbjct: 94 -----NNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKL 148
Query: 340 TFTDLEDNDTLYAQSLRAIRDIHLSGVT-EANFPEIIPLECFEGASWTGRITPIVTGGQS 398
T DLE DT + SL IRD ++ E F + +E G + GG +
Sbjct: 149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYF--SVDMEIL-GKV---TSHDLKLGGSN 202
Query: 399 VPLTFANRLQY 409
+ +T N+ +Y
Sbjct: 203 ILVTEENKDEY 213
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 70.0 bits (172), Expect = 1e-13
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
AIA G+ H + G + +G G+L V++++ G H
Sbjct: 28 AIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQ------------SGVDAIAAGNYH 74
Query: 473 TVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
++ + D G+ V A+G E G+ +
Sbjct: 75 SLALKD-GE-VIAWGGNEDGQTTVPAEARSGVDA 106
Score = 66.2 bits (162), Expect = 3e-12
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+A G HS + +G + +G+ Y + T V +++ G
Sbjct: 183 DDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTEAL------------SGVSAIASGEW 229
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNT 499
+++ + + GK V A+G + +
Sbjct: 230 YSLALKN-GK-VIAWGSSRTAPSSVQSG 255
Score = 63.9 bits (156), Expect = 2e-11
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
AIA G HS + +G + +G + G+ V A ++ G
Sbjct: 67 AIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAE----ARSGVDA--------IAAGAWA 113
Query: 473 TVCIADKGKAVYAFGDGEYGKLGLGNTGLK 502
+ + D GK V A+GD G+ +
Sbjct: 114 SYALKD-GK-VIAWGDDSDGQTTVPAEAQS 141
Score = 63.5 bits (155), Expect = 2e-11
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
A+ G ++A+ NG + +G+ +G+ V A + V+ V+ G+
Sbjct: 144 TALDGGV-YTALAVKNGGVIAWGDNYFGQTT------------VPAEAQSGVDDVAGGIF 190
Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGL 501
H++ + D V A+GD Y + + L
Sbjct: 191 HSLALKDGK--VIAWGDNRYKQTTVPTEAL 218
Score = 62.7 bits (153), Expect = 4e-11
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+PA + I+ G H LA+ G+V WG N + QL + A +
Sbjct: 18 VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQLTMP------------AATQSG 64
Query: 69 IRQVSAGRSHSAA 81
+ ++AG HS A
Sbjct: 65 VDAIAAGNYHSLA 77
Score = 60.0 bits (146), Expect = 3e-10
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+PA + I+ G H LA+ + G+V AWG N D Q + +
Sbjct: 57 MPAATQSGVDAIAAGNYHSLALKD-GEVIAWGGNEDGQTTVPAEA------------RSG 103
Query: 69 IRQVSAGRSHSAA 81
+ ++AG S A
Sbjct: 104 VDAIAAGAWASYA 116
Score = 57.3 bits (139), Expect = 2e-09
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
AIA G S + +G + +G+ G+ V ++ G+
Sbjct: 106 AIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQ------------SGVTALDGGVYT 152
Query: 473 TVCIADKGKAVYAFGDGEYGKLGLGNTGLK 502
+A K V A+GD +G+ +
Sbjct: 153 --ALAVKNGGVIAWGDNYFGQTTVPAEAQS 180
Score = 54.6 bits (132), Expect = 2e-08
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+PA + D++ G H LA+ + G+V AWG+N Q + ALS
Sbjct: 174 VPAEAQSGVDDVAGGIFHSLALKD-GKVIAWGDNRYKQTTVP----------TEALS--G 220
Query: 69 IRQVSAGRSHSAA 81
+ +++G +S A
Sbjct: 221 VSAIASGEWYSLA 233
Score = 52.7 bits (127), Expect = 7e-08
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAG 75
+ I+ G + LA+ N G+V AWG++ A + + + + AG
Sbjct: 220 GVSAIASGEWYSLALKN-GKVIAWGSSRTAPSSVQS----------------GVSSIEAG 262
Query: 76 RSHSAAWTA 84
+ + A
Sbjct: 263 PNAAYALKG 271
Score = 51.9 bits (125), Expect = 2e-07
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGR 76
+ I+ G A+ + G+V AWG++SD Q + + + + + G
Sbjct: 104 VDAIAAGAWASYALKD-GKVIAWGDDSDGQTTVPAE------------AQSGVTALDGGV 150
Query: 77 SHSAA 81
+ A
Sbjct: 151 YTALA 155
Score = 50.0 bits (120), Expect = 7e-07
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+PA + + G LAV N G V AWG+N Q V A +
Sbjct: 135 VPAEAQSGVTALDGGVYTALAVKN-GGVIAWGDNYFGQTT------------VPAEAQSG 181
Query: 69 IRQVSAGRSHSAA 81
+ V+ G HS A
Sbjct: 182 VDDVAGGIFHSLA 194
Score = 48.8 bits (117), Expect = 1e-06
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 17/73 (23%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
+AIA G +S + NG + +G+ + V S+ G N
Sbjct: 222 SAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQSG----------------VSSIEAGPN 264
Query: 472 HTVCIADKGKAVY 484
+ + +
Sbjct: 265 AAYALKGGSGSGH 277
Score = 42.3 bits (100), Expect = 2e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 13/75 (17%)
Query: 428 GYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFG 487
+ +G + V A + V++++ G H + + GK V +G
Sbjct: 2 TSVVAWGGNNDWGEA-----------TVPAEAQSGVDAIAGGYFHGLALKG-GK-VLGWG 48
Query: 488 DGEYGKLGLGNTGLK 502
G+L +
Sbjct: 49 ANLNGQLTMPAATQS 63
Score = 38.8 bits (91), Expect = 0.002
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 11/48 (22%)
Query: 34 GQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAA 81
V AWG N+D V A + + ++ G H A
Sbjct: 2 TSVVAWGGNNDWGEA-----------TVPAEAQSGVDAIAGGYFHGLA 38
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 67.6 bits (166), Expect = 2e-12
Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 220 RQVVKMKGSD-LRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNG 278
R+++ +K D L+ ++ E D GGV + + E+ + L +
Sbjct: 58 RRIMSVKRPDVLKAR---LWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATD 114
Query: 279 VADTGY--NRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQ 336
+ N + + N D L +F F+G + G+A+ K L +K+++
Sbjct: 115 --NYTLQINPNSGLCNED------HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLG 166
Query: 337 EPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGG 396
+ +T D+E D+ Y SL+ I + + + + F I E F G ++ + G
Sbjct: 167 KQITLNDMESVDSEYYNSLKWILENDPTEL-DLMF--CIDEENF-GQTYQ---VDLKPNG 219
Query: 397 QSVPLTFANRLQY 409
+ +T N+ +Y
Sbjct: 220 SEIMVTNENKREY 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 4e-08
Identities = 91/510 (17%), Positives = 149/510 (29%), Gaps = 172/510 (33%)
Query: 19 DISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQI--NYREPQLVLALSNKNIRQVSAGR 76
DI H LA + +D L ++ NY ++ + + +
Sbjct: 100 DI-----HALAAKLLQE-------NDTTLVKTKELIKNYIT---ARIMAKRPFDK----K 140
Query: 77 SHSAAWTAPPLPPHTPGHTPSSSLRL-----GLPQDIPDHY-GHLQN-----KPL--PLI 123
S+SA + A + +L G Q D Y L++ L LI
Sbjct: 141 SNSALFRA----------VGEGNAQLVAIFGG--QGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 124 RARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRP-----LFAPRVYTL 178
+ + L+ ++ G WL +PS P L P +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQG--------LNILEWLENPSNTPDKDYLLSIP--ISC 238
Query: 179 PLV------------RSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPI----------FA 216
PL+ + +G T ++ T S+ V + F
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTP---GELRSY--LKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 217 QISRQVVKMK---GSDLR----LPSRAWKVKLLGEGADDAGGV--------------FDD 255
R+ + + G +R P+ + +L + ++ GV D
Sbjct: 294 VSVRKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 256 TITEMCGEL-LSGAVPL-LVRTPNGVADTGYNRDRYILNPDL------SESLQSLMHFKF 307
+ + L V + LV + +G + Y LN L S QS + F
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-- 409
Query: 308 LGILFGVAIRTKKP------LPL--PL-SPL---VWKLIVQE---------------PV- 339
+K LP+ P S L LI ++ PV
Sbjct: 410 ---------SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 340 -TFT--DLEDNDTLYAQSL-RAI-RD-IHLSGVTEANFPEII---PLECFEGASWTGRIT 390
TF DL ++ + I R + T+ I+ P GAS G +T
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG----GASGLGVLT 516
Query: 391 PIVTGGQSVPLTFANRLQYYEAAIACGFKH 420
G V + A L GFK
Sbjct: 517 HRNKDGTGVRVIVAGTLD-INPDDDYGFKQ 545
Score = 47.0 bits (111), Expect = 1e-05
Identities = 58/351 (16%), Positives = 105/351 (29%), Gaps = 118/351 (33%)
Query: 1 MSGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQL------GLGNQIN 54
+ G +G H + +A +++ + F + + G+
Sbjct: 267 LKGATG---------HSQGLVTAV--AIAETDSWESFF--VSVRKAITVLFFIGVRCYEA 313
Query: 55 YREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQD-IPDHYG 113
Y P L S I + S + P +P S+ L Q+ + D+
Sbjct: 314 Y--PNTSLPPS---ILEDSLENNE----GVP---------SPMLSIS-NLTQEQVQDYVN 354
Query: 114 HLQNKPLPLIRA-RLKLLN---RF------SDLIYQVVRLL-----PLGNVDQDWVQCTP 158
N LP + + L+N L Y + L P G +DQ + P
Sbjct: 355 KT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSG-LDQSRI---P 408
Query: 159 YSW-LVHPSLR--PLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIF 215
+S + S R P+ +P + L+ I
Sbjct: 409 FSERKLKFSNRFLPVASP--FHSHLLVPA--------------------------SDLIN 440
Query: 216 AQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITE-MCGELLSGAV--PLL 272
+ + V D+++P V +G+D V +I+E + ++ V
Sbjct: 441 KDLVKNNVSFNAKDIQIP-----VYDTFDGSDLR--VLSGSISERIVDCIIRLPVKWETT 493
Query: 273 VRT---------PNGVADTGY----NRD----RYILNPDLSESLQSLMHFK 306
+ P G + G N+D R I+ L + FK
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 29.6 bits (66), Expect = 3.4
Identities = 55/311 (17%), Positives = 81/311 (26%), Gaps = 99/311 (31%)
Query: 166 SLRPLFAPRVYTLPLVRSVGK---TMLVGKNFGPSVTVRRLT-TKSKQTVKPIFAQISRQ 221
S RPL TL S G +LV + + K FA
Sbjct: 5 STRPL------TL----SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 222 VVKMKGSDLRLPSRAWKVKLLG----EGADDAGGVFDDTITEMCGEL----LSG------ 267
+ L + LG G FD + E L G
Sbjct: 55 T-----TPAELVGK-----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 268 AVPLLVRTPNGVADTG-----YNRDRYILNPDLSESLQSLM-------HFKFLGILFG-- 313
A LL + T Y R + + S + + + + I FG
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQ 163
Query: 314 ----------VAI-RTKKPLPLPL----SPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAI 358
+ +T L L + + +LI D + ++ Q L
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-------RTTLDAEKVFTQGL--- 213
Query: 359 RDIH--LSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRL-QYYEAAIA 415
+I L P P + I PI S PL +L Y A
Sbjct: 214 -NILEWLEN------PSNTP-----DKDYLLSI-PI-----SCPLIGVIQLAHYVVTAKL 255
Query: 416 CGFKHSAVVTS 426
GF + +
Sbjct: 256 LGFTPGELRSY 266
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix
bundle, alpha/beta domain, PAT protein, lipid binding,
peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Length = 247
Score = 32.1 bits (72), Expect = 0.33
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 90 HTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLI--------YQVV 141
+ +S++ GLP + + +++ L +A ++ F DL ++
Sbjct: 152 QSMCVALGASIQ-GLPSHVREQAQQARSQVNDL-QATFSGIHSFQDLSAGVLAQTRERIA 209
Query: 142 RL-LPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRV 175
R L N + Q TP WLV P FAP +
Sbjct: 210 RAREALDNTVEYVAQNTPAMWLVGP-----FAPGI 239
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 30.1 bits (68), Expect = 1.4
Identities = 9/57 (15%), Positives = 13/57 (22%), Gaps = 10/57 (17%)
Query: 90 HTPGHTP-SSSLRLGLPQD---------IPDHYGHLQNKPLPLIRARLKLLNRFSDL 136
HTP H S L P+ + L+R +
Sbjct: 148 HTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVGRI 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 2.2
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 19/117 (16%)
Query: 284 YNRDRYILNPDLSESLQSLMHFKFLGILFGV-----------AIRTKKPLPLPLSPLVWK 332
YN R L ++L L K + ++ GV + K + W
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186
Query: 333 LIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRI 389
+ + +T+ + + I + + ++ I L + R+
Sbjct: 187 ------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint
center for structural genomics, J protein structure
initiative; 1.90A {Salmonella typhimurium LT2} SCOP:
b.82.1.24
Length = 133
Score = 28.4 bits (63), Expect = 3.0
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 421 SAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL 458
V G GD + G+++ + P V L
Sbjct: 85 ELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL 122
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 29.5 bits (65), Expect = 3.1
Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 33/192 (17%)
Query: 72 VSAGRSHSAAWTAPPLPPHTPGH--------------TPSSSLRLGLPQDIPDHYGHLQN 117
HS T +T G + R GLP+D D+ G +
Sbjct: 249 ECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHS 308
Query: 118 KPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPR--- 174
R + + L+ ++ P+ V + +H SL P+ R
Sbjct: 309 DSKD--PRRTAFMEKVRVLVARLGHFAPVDAVADQRAK-----DFIHDSLPPVLTDRERA 361
Query: 175 --VYTLPLVRSVGKTMLVGKNFGPSVTVR-------RLTTKSKQTVKPIFAQISRQVVKM 225
VY LP+ G+ + VG V RL + + SR
Sbjct: 362 LSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLE 421
Query: 226 KGSDLRLPSRAW 237
+ L + +
Sbjct: 422 EPKCLEIYPQQA 433
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 29.3 bits (65), Expect = 3.7
Identities = 5/79 (6%), Positives = 16/79 (20%), Gaps = 13/79 (16%)
Query: 418 FKHSAVVTSNGYLYTF-GNGDYGRLGHGT--------TMNWKVPERVVALNKVHVESVSC 468
+ + L G G + + ++ +
Sbjct: 598 YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT---SIPISRRIWEDHSLM 654
Query: 469 GLNHTVCIADKGKAVYAFG 487
++ G ++ G
Sbjct: 655 LAGFSLVSTSMGT-IHIIG 672
Score = 28.9 bits (64), Expect = 5.0
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 420 HSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT-VCIAD 478
HSA +G + G G + + V E + E L +
Sbjct: 493 HSACSLPDGNVLILG----GVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP 548
Query: 479 KGKAVYAFGDGEYGKLGLGNTGL 501
K G G + + + +
Sbjct: 549 VSKQGIILGGGFMDQTTVSDKAI 571
>4axo_A EUTQ, ethanolamine utilization protein; structural protein,
bacterial microcompartment, BMC; 1.00A {Clostridium
difficile}
Length = 151
Score = 28.1 bits (62), Expect = 3.9
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 421 SAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVAL 458
+ + +G + +G+ + G+ + + VP+ +
Sbjct: 94 TLDIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFI 131
>3lho_A Putative hydrolase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}
Length = 267
Score = 28.4 bits (63), Expect = 4.9
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 422 AVVTSNGYLYTFGNGDYGRLGHGTTM---NWKVPERVVALNKV---HVESVSCGLNHTVC 475
A V + GY L + N + + LN S L +
Sbjct: 154 AWVAALGYRANHFTVSINDLPEFERIEDVNQALKQAGFVLNSSGGEVKGSPEVLLEQSST 213
Query: 476 IADKGKAVYAFGDGE 490
+ADK + GD E
Sbjct: 214 MADKVVVNFTDGDVE 228
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 27.5 bits (62), Expect = 8.1
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 90 HTPGHTPSS 98
TPGHT
Sbjct: 113 ATPGHTAGC 121
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 27.9 bits (63), Expect = 8.9
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 347 NDTLY-AQSLRAIRDIHLSGVTEANFPEII 375
D + Q+LRA+ + LS V + P ++
Sbjct: 37 MDAYFGIQTLRAVENFSLSDVALNHIPALV 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.422
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,928,144
Number of extensions: 489800
Number of successful extensions: 1264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1137
Number of HSP's successfully gapped: 128
Length of query: 506
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 408
Effective length of database: 3,965,535
Effective search space: 1617938280
Effective search space used: 1617938280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)