RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15270
(506 letters)
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 374
Score = 105 bits (264), Expect = 1e-25
Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 24/218 (11%)
Query: 197 SVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDT 256
+ V R T +F +Q++ +K DLR R V GE D GG+ +
Sbjct: 25 KINVSRQT---------LFEDSFQQIMALKPYDLR---RRLYVIFRGEEGLDYGGLAREW 72
Query: 257 ITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAI 316
+ E+L+ L N +NP + + L +F F+G +A+
Sbjct: 73 FFLLSHEVLNPMYCLFEYAGK-------NNYCLQINPASTINPDHLSYFCFIGRFIAMAL 125
Query: 317 RTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIP 376
K + S +K ++ + +T DLE DT + SL IRD ++ +
Sbjct: 126 FHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIE-ECGLEMYFSVD 184
Query: 377 LECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
+E + GG ++ +T N+ +Y
Sbjct: 185 MEIL----GKVTSHDLKLGGSNILVTEENKDEYIGLMT 218
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 89.8 bits (222), Expect = 3e-20
Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 23/217 (10%)
Query: 198 VTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTI 257
+ VRR I ++ + + + V+ GE D GGV +
Sbjct: 6 LKVRRDH---------IIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFF 56
Query: 258 TEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIR 317
+ E+ + + + + + NP E+ F +GI+ G+AI
Sbjct: 57 QLVVEEIFNPDIGMFTYDEST--------KLFWFNPSSFETE---GQFTLIGIVLGLAIY 105
Query: 318 TKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPL 377
L + +V++ ++ + TF DL D+ + QSL+ + + + + I
Sbjct: 106 NNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQ 165
Query: 378 ECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
G + + G +P+T NR ++
Sbjct: 166 TDLFG---NPMMYDLKENGDKIPITNENRKEFVNLYS 199
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 82.5 bits (202), Expect = 1e-17
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 420 HSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADK 479
H + T G + T G GD G+LG G + + +V++ + V G HTVC++
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE-DVVQAEAGGMHTVCLSKS 65
Query: 480 GKAVYAFGDGEYGKLGLGN 498
G+ VY+FG + G LG
Sbjct: 66 GQ-VYSFGCNDEGALGRDT 83
Score = 79.5 bits (194), Expect = 1e-16
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVV--ALNKVHVESVSCGL 470
++ACG VT +G ++ +G G +LG G + P ++ L V SVS G
Sbjct: 329 SVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGG 388
Query: 471 NHTVCIADKGK 481
HTV + +
Sbjct: 389 QHTVLLVKDKE 399
Score = 76.4 bits (186), Expect = 1e-15
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 17 IVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVL--ALSNKNIRQVSA 74
+ ++ G AV+ G+VFAWG ++ QLG G + P ++ L N+ + VS+
Sbjct: 327 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSS 386
Query: 75 GRSHSAA 81
G H+
Sbjct: 387 GGQHTVL 393
Score = 65.2 bits (157), Expect = 5e-12
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGT-TMNWKVPERVVALNKVHVESVSCGL 470
+ G H+ + S G Y+ G +YGRLG G +P + L V SV+CG
Sbjct: 277 VGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV--SSVACGA 334
Query: 471 NHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
+ + G+ V+A+G G +LG G +P
Sbjct: 335 SVGYAVTKDGR-VFAWGMGTNYQLGTGQDEDAWSPV 369
Score = 64.4 bits (155), Expect = 8e-12
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 22 VGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYR-EPQLVLALSNKNIRQVSAGRSHSA 80
V H + G V G QLGLG + R +P LV ++ Q AG H+
Sbjct: 3 VKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTV 60
Query: 81 AWTA 84
+
Sbjct: 61 CLSK 64
Score = 49.8 bits (117), Expect = 4e-07
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNW 449
G H+ ++ +G +Y+FG D G LG T++
Sbjct: 51 QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEG 87
Score = 49.4 bits (116), Expect = 5e-07
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAG 75
+V G H + +S +GQV+++G N + LG + E + + QVSAG
Sbjct: 48 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG 107
Query: 76 RSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGH 114
SH+AA T G ++ +GL + +
Sbjct: 108 DSHTAALTDDG-RVFLWGSFRDNNGVIGLLEPMKKSMVP 145
Score = 42.5 bits (98), Expect = 9e-05
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 469 GLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTP 505
++H + G V G G+ G+LGLG ++
Sbjct: 4 KVSHRSHSTEPGL-VLTLGQGDVGQLGLGENVMERKK 39
Score = 38.2 bits (87), Expect = 0.002
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 8 HIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYRE-PQLVLALSN 66
V S G H + + + G+ ++ G +LGLG + P L+ L
Sbjct: 267 TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA 326
Query: 67 KNIRQVSAGRSHSAAWTA 84
+ V+ G S A T
Sbjct: 327 --VSSVACGASVGYAVTK 342
Score = 36.7 bits (83), Expect = 0.006
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERV----------------VA 457
+A G H ++T++G LYT G G+ G+LG + R +
Sbjct: 157 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGS 216
Query: 458 LNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNT 499
V + CG T I+ +G VY FG Y +LG T
Sbjct: 217 RGHVRFQDAFCGAYFTFAISHEGH-VYGFGLSNYHQLGTPGT 257
Score = 32.5 bits (72), Expect = 0.11
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPER--VVALNKVHVESVSCG 469
CG + ++ G++Y FG +Y +LG T + +P+ + S G
Sbjct: 223 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 282
Query: 470 LNHTVCIADKGKAVYAFGDGEYGKLGLGN 498
+HTVC+ +GK Y+ G EYG+LGLG
Sbjct: 283 QHHTVCMDSEGK-AYSLGRAEYGRLGLGE 310
Score = 30.5 bits (67), Expect = 0.43
Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 8 HIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVL----- 62
+ ++ +V ++ G +H++ ++ G ++ G QLG ++
Sbjct: 145 PVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLL 204
Query: 63 -----------ALSNKNIRQVSAGRSHSAAWT 83
+ + + G + A +
Sbjct: 205 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 236
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 48.2 bits (113), Expect = 1e-06
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 17/66 (25%)
Query: 16 HIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAG 75
+ I+ G + LA+ N G+V AWG++ A + + + + AG
Sbjct: 222 GVSAIASGEWYSLALKN-GKVIAWGSSRTAPSSVQS----------------GVSSIEAG 264
Query: 76 RSHSAA 81
+ + A
Sbjct: 265 PNAAYA 270
Score = 45.9 bits (107), Expect = 5e-06
Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 414 IACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHT 473
G ++ +G + +G+ Y + T V +++ G ++
Sbjct: 186 DVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEAL------------SGVSAIASGEWYS 233
Query: 474 VCIADKGKAVYAFGDGEYGKLGLGN--TGLKPTPQ 506
+ + + V A+G + + + ++ P
Sbjct: 234 LALKNGK--VIAWGSSRTAPSSVQSGVSSIEAGPN 266
Score = 42.8 bits (99), Expect = 5e-05
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 9 IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
+PA + I+ G H LA+ G+V WG N + QL +
Sbjct: 20 VPAEAQSGVDAIAGGYFHGLALKG-GKVLGWGANLNGQLTMPAATQS------------G 66
Query: 69 IRQVSAGRSHSAAWTAPPLPPHTPGH 94
+ ++AG HS A +
Sbjct: 67 VDAIAAGNYHSLALKDGEVIAWGGNE 92
Score = 39.4 bits (90), Expect = 6e-04
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 17/64 (26%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
AIA G +S + NG + +G+ + V S+ G N
Sbjct: 225 AIASGEWYSLALK-NGKVIAWGSSRTAPSSVQSG----------------VSSIEAGPNA 267
Query: 473 TVCI 476
+
Sbjct: 268 AYAL 271
Score = 38.2 bits (87), Expect = 0.002
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 1 MSGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQL 60
G+ + VD G G+V AWG+N Q + +
Sbjct: 167 GDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTE-------- 218
Query: 61 VLALSNKNIRQVSAGRSHSAAWT 83
+ + +++G +S A
Sbjct: 219 ----ALSGVSAIASGEWYSLALK 237
Score = 36.3 bits (82), Expect = 0.007
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 13/63 (20%)
Query: 413 AIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNH 472
AIA G+ H + G + +G G+L V++++ G H
Sbjct: 30 AIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQS------------GVDAIAAGNYH 76
Query: 473 TVC 475
++
Sbjct: 77 SLA 79
Score = 35.1 bits (79), Expect = 0.014
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 426 SNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYA 485
+ + +G + G T V A + V++++ G H + + GK V
Sbjct: 2 AATSVVAWGGNNDW--GEAT---------VPAEAQSGVDAIAGGYFHGLALKG-GK-VLG 48
Query: 486 FGDGEYGKL 494
+G G+L
Sbjct: 49 WGANLNGQL 57
Score = 34.7 bits (78), Expect = 0.018
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 34 GQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWT 83
V AWG N+D + V A + + ++ G H A
Sbjct: 4 TSVVAWGGNND-----WGEAT------VPAEAQSGVDAIAGGYFHGLALK 42
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 28.3 bits (62), Expect = 2.5
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 347 NDTLY-AQSLRAIRDIHLSGVTEANFPEII 375
D Y +LRAI + ++S ++ PE +
Sbjct: 19 ADAYYGVHTLRAIENFYISNNKISDIPEFV 48
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 27.8 bits (61), Expect = 3.2
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 347 NDTLY-AQSLRAIRDIHLSGVTEANFPEII 375
D + AQ+ R+ ++ + G E ++
Sbjct: 16 ADKYWGAQTQRSFQNFKIGGARERMPLPLV 45
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga
maritima [TaxId: 2336]}
Length = 88
Score = 25.9 bits (57), Expect = 3.8
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 420 HSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERV 455
V T +G Y GD G WKV E V
Sbjct: 46 KVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPV 81
>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 189
Score = 26.3 bits (58), Expect = 8.1
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 404 ANRLQYYEAAIACGFKHSAVVTSNG 428
+ + A GFKHS ++ +N
Sbjct: 111 GWDI--LKIAREAGFKHSGILATNQ 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.422
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,914,974
Number of extensions: 90645
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 28
Length of query: 506
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 417
Effective length of database: 1,185,626
Effective search space: 494406042
Effective search space used: 494406042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)