BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15272
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++LIE + + D + + I++G +VN D G+T L++A+ G +E+V+ L +GADVN
Sbjct: 6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LHYAA G + K+L+ GA+ + +D DG+TPL A + EGH+E
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK---EGHKE 117
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
+++ + S G +VN D G+T L++A+ G +E+V+ L +GADVN + LHYAA
Sbjct: 52 IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 111
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + K+L+ GA+ + D DG+TPLD ARE +E
Sbjct: 112 KEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
M ++G+ L+ A+ G ++ V+ L E GADVN + LHYAA G + K+L+
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK 59
Query: 94 GANPDLRDEDGKTPLDKARERVDEGHRE 121
GA+ + +D DG+TPL A + EGH+E
Sbjct: 60 GADVNAKDSDGRTPLHYAAK---EGHKE 84
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
+++ + S G +VN D G+T L+ A G +E+V+ L ++G
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
+++ + S G + N D G+T L++A+ G +E+V+ L +GAD N + LHYAA
Sbjct: 52 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + K+LL GA+P+ D DG+TPLD ARE +E
Sbjct: 112 ENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNE 149
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++LIE + + D + + +++G + N D G+T L++A+ G +E+V+ L +GAD N
Sbjct: 6 KRLIEAAENGNKDRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LHYAA G + K+LL GA+P+ +D DG+TPL A E GH+E
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN---GHKE 117
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
M ++G+ L+ A+ G ++ V+ L E GAD N + LHYAA G + K+LL
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK 59
Query: 94 GANPDLRDEDGKTPLDKARERVDEGHRE 121
GA+P+ +D DG+TPL A E GH+E
Sbjct: 60 GADPNAKDSDGRTPLHYAAEN---GHKE 84
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++LIE + + D + + +++G +VN D G+T L+ A+ G +E+V+ L +GAD N
Sbjct: 6 KRLIEAAENGNKDRVKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH AA G V K+LL GA+P+ +D DGKTPL A E GH+E
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN---GHKE 117
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAA 79
+++ + S G + N D G+T L+ A+ G +E+V+ L +GAD N + LH AA
Sbjct: 52 VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 111
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G V K+LL GA+P+ D DG+TPLD ARE +E
Sbjct: 112 ENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNE 149
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRH 93
M ++G+ L+ A+ G ++ V+ L E GADVN + LH AA G V K+LL
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
Query: 94 GANPDLRDEDGKTPLDKARERVDEGHRE 121
GA+P+ +D DGKTPL A E GH+E
Sbjct: 60 GADPNAKDSDGKTPLHLAAEN---GHKE 84
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D VG T L+ A+ +G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGRDDE-VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
S+ LH AA FG + +VLL++GA+ + +D++G TPL A R GH E
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR---GHLE 127
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D +G T L+ A+ FG E+VE L + GADVN + + LH AA
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + +VLL++GA+ + +D+ GKT D
Sbjct: 122 NRGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++LIE + + D + + I++G +VN D G+T L+ A+ G +E+V+ L +GADVN
Sbjct: 6 KRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH+AA G V K+L+ GA+ + +D DG+TPL A E GH+E
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN---GHKE 117
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
+++ + S G +VN D G+T L+ A+ G +E+V+ L +GADVN + LH+AA
Sbjct: 52 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G V K+L+ GA+ + D DG+TPLD ARE +E
Sbjct: 112 ENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
M ++G+ L+ A+ G ++ V+ L E GADVN + LH+AA G V K+L+
Sbjct: 1 MSELGKRLIE-AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK 59
Query: 94 GANPDLRDEDGKTPLDKARERVDEGHRE 121
GA+ + +D DG+TPL A E GH+E
Sbjct: 60 GADVNAKDSDGRTPLHHAAEN---GHKE 84
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
+++ + S G +VN D G+T L+ A G +E+V+ L ++G
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D+ G T L+ A++ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LH AA G + +VLL+HGA+ + D DG TPL A + GH E
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY---GHLE 127
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA 79
++E + G +VN D G T L+ A+A G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
+G + +VLL+HGA+ + +D+ GKT D + + +E
Sbjct: 122 KYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN DD G+T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LH AA +G + +VLL++GA+ + D G TPL A D GH E
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA---ADAGHLE 127
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D +G T L+ A+ +G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + +VLL++GA+ + +D+ GKT D
Sbjct: 122 DAGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAA 79
++E + G +VN +D G T L A+ FG E+VE L + GADVN + + LH AA
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
FG + +VLL++GA+ + +D+ GKT D
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ + L AA FG + +VLL++GA+ + D +G TPL A
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ + E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
S+ LH AA FG + +VLL+HGA+ + +D+ GKT D
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFD 118
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D+ G T L A+A G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 68 K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH AA G +A+VLL+HGA+ + +D+ GKT D
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADVN + L+ A G + +VLL++GA
Sbjct: 13 DLGKKLLEAARA-GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 96 NPDLRDEDGKTPLDKA 111
+ + D G TPL A
Sbjct: 72 DVNAVDAIGFTPLHLA 87
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN MDD G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH AA G + +VLL +GA+ + +D+ GKT D
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ +G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 68 K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
S+ LH AA G + +VLL+HGA+ + D G TPL A
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAA 79
++E + G +VN +D +G T L+ A+ G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + +VLL+HGA+ + +D+ GKT D + + +E
Sbjct: 122 IMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN +D+ G T L+ A+ G E+VE L + GADV+
Sbjct: 16 KKLLEAARAGQDDE-VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH AA G + +VLL++GA+ + D G TPL A DEGH E
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA---ADEGHLE 127
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAA 79
++E + G +V+ D G T L+ A+ G E+VE L + GADVN + S LH AA
Sbjct: 62 IVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + +VLL++GA+ + +D+ GKT D + + +E
Sbjct: 122 DEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ +G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 68 K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
S+ LH AA G + +VLL+HGA+ + D G TPL A
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAA 79
++E + G +VN +D G T L+ A+ G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + +VLL+HGA+ + +D+ GKT D + + +E
Sbjct: 122 IMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN MDD G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 68 KGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH AA G + +VLL +GA+ + +D+ GKT D
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G + N D G+T L+ A+A G E+VE L GADVN
Sbjct: 4 KKLLEAARAGQDDE-VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 68 K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
++ LH AA G + +VLL++GA+ + +D G TPL
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPL 105
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN +D G T L+ A++ G E+VE L + GADVN + + L+ AA
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA 109
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+G + +VLL+HGA+ + +D+ GKT D
Sbjct: 110 YWGHLEIVEVLLKHGADVNAQDKFGKTAFD 139
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GAD N + LH AA G + +VLLR+GA
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA 59
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + D +G TPL A GH E
Sbjct: 60 DVNAVDTNGTTPLHLAASL---GHLE 82
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN DD G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH AA G + +VLL++GA+ + +D G TPL A +R GH E
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR---GHLE 127
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADVN Q S+ LH AA G P + +VLL+HGA
Sbjct: 13 DLGKKLLEAARA-GQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + RD DG TPL A D GH E
Sbjct: 72 DVNARDTDGWTPLHLA---ADNGHLE 94
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA 79
++E + G +VN D G T L+ A+ G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + +VLL+HGA+ + +D+ GKT D
Sbjct: 122 DRGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D VG T L+ A+ FG E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH AA G V +VLL++GA+ + D +G TPL A + GH E
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA---ANIGHLE 127
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D +G T L+ A+ G E+VE L + GADVN + + LH AA
Sbjct: 62 IVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + +VLL+HGA+ + +D+ GKT D + + +E
Sbjct: 122 NIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN MDD G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 68 KGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH AA G + +VLL +GA+ + +D+ GKT D
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFD 118
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
R+L+E R+ D + + + G +VN D+ G T L+ A+ G E+VE L + GADV+
Sbjct: 16 RKLLEAARAGQDDE-VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ LH AA +G + +VLL++GA+ + D DG TPL A
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA 79
++E + G +V+ D G T L+ A+ +G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
+G + +VLL+HGA+ + +D+ GKT D + + +E
Sbjct: 122 KWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D +G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 68 K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++ LH AA G + +VLL+HGA+ + +D +G TPL A +GH E
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAY---DGHLE 127
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D+ G T L+ A+ G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + +VLL++GA+ + +D+ GKT D + + +E
Sbjct: 122 YDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN +D+ G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH AA G + +VLL+HGA+ + +D+ GKT D
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFD 118
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E + D + + + G +VN DD G T L+ A+A G E+VE L + GADVN
Sbjct: 8 KKLLEAAAAGQDDE-VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ + LH AA G + +VLL+HGA+ + D G TPL A
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D G T L+ A+ G E+VE L + GADVN R+ + LH AA
Sbjct: 54 IVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAA 113
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G+ + +VLL+HGA+ + +D G T D
Sbjct: 114 LSGQLEIVEVLLKHGADVNAQDALGLTAFD 143
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 4 KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LH AA G + +VLL+ GA+ + +D+DG TPL A EGH E
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 115
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D G T L+ A+ G E+VE L + GADVN + + LH AA
Sbjct: 50 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G + +VLL+ GA+ + +D+ GKTP D A + EGH +
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLA---IREGHED 148
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADVN + + LH AA G + +VLL+ GA
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + +D+DG TPL A EGH E
Sbjct: 60 DVNAKDKDGYTPLHLAAR---EGHLE 82
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 68 KGQRSSS--LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
S S LH AA G + +VLL++GA+ + D G TPL A D GH E
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA---ADTGHLE 127
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAA 79
++E + G +VN +D G T L+ A+ G E+VE L + GADVN S+ LH AA
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + +VLL++GA+ + +D+ GKT D
Sbjct: 122 DTGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 4 KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LH AA G + +VLL+ GA+ + +D+DG TPL A EGH E
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 115
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D G T L+ A+ G E+VE L + GADVN + + LH AA
Sbjct: 50 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G + +VLL+ GA+ + +D+ GKTP D A +D G+ +
Sbjct: 110 REGHLEIVEVLLKAGADVNAQDKFGKTPFDLA---IDNGNED 148
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADVN + + LH AA G + +VLL+ GA
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + +D+DG TPL A EGH E
Sbjct: 60 DVNAKDKDGYTPLHLAAR---EGHLE 82
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LH AA G + +VLL+ GA+ + +D+DG TPL A EGH E
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR---EGHLE 127
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D G T L+ A+ G E+VE L + GADVN + + LH AA
Sbjct: 62 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + +VLL+ GA+ + +D+ GKT D
Sbjct: 122 REGHLEIVEVLLKAGADVNAQDKFGKTAFD 151
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADVN + + LH AA G + +VLL+ GA
Sbjct: 13 DLGKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + +D+DG TPL A EGH E
Sbjct: 72 DVNAKDKDGYTPLHLAAR---EGHLE 94
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ FG E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH AA G + +VLL++GA+ + D G TPL A +R GH E
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR---GHLE 127
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + G +VN D +G T L+ A+ G E+VE L + GADVN + LH AA
Sbjct: 62 IVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + +VLL++GA+ + +D+ GKT D
Sbjct: 122 KRGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D VG T L+ A+ E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 68 K--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH A +G + +VLL+HGA+ + +D+ GKT D
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFD 118
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
+++E + G +V+ D G L+ A ++G E+ E L + GA VN + + LH A
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
A G+ + K+LL+HGA+P ++ DG TPLD ++
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 47 ASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDE 102
A+ G E V+ LC + VN +G++S+ LH+AA + R SV + LL+HGA+ +D+
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 103 DGKTPLDKA 111
G PL A
Sbjct: 74 GGLVPLHNA 82
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
+ + LH AA + +VLL+HGA+ + +D+ GKT D + + +E
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
+++E + G +V+ D G L+ A ++G E+ E L + GA VN + + LH A
Sbjct: 60 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
A G+ + K+LL+HGA+P ++ DG TPLD ++
Sbjct: 120 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 47 ASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDE 102
A+ G E V+ LC + VN +G++S+ LH+AA + R SV + LL+HGA+ +D+
Sbjct: 19 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 103 DGKTPLDKA 111
G PL A
Sbjct: 78 GGLVPLHNA 86
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYA 78
+++E + G +V+ D G L+ A ++G E+ E L + GA VN + + LH A
Sbjct: 58 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 117
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
A G+ + K+LL+HGA+P ++ DG TPLD ++
Sbjct: 118 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 47 ASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDE 102
A+ G E V+ LC + VN +G++S+ LH+AA + R SV + LL+HGA+ +D+
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 103 DGKTPLDKA 111
G PL A
Sbjct: 76 GGLVPLHNA 84
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
+++ + G +VN D G+T L+ A+ G E+V+ L E GADVN ++ + LH AA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
G V K+LL GA+ + +D++G+TPL A
Sbjct: 77 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
G+T L+ A+ G E+V+ L E GADVN ++ + LH AA G V K+LL GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 DLRDEDGKTPLDKA 111
+ +D++G+TPL A
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
+++ + G +VN D G+T L+ A+ G E+V+ L E GA
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN ++ + LHYAA
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
R +A +LL GANPD +D T + +A +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 1 MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
M+ C + S D L E I + D +T L+WA + G E+VEFL
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 61 ERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ G VN + S LH AA G + K LL GA+ + +++G TPL A +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSS 73
SK+ + + GG + D T ++ A+A G +MV L A N + ++
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
LH A R AK L+ GA+ + +++ KTPL A+
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ G E++E L + ADVN
Sbjct: 16 KKLLEAARAGQDDE-VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+S + LH AA G + +VLL++GA+ + D G TPL A E +GH E
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE---DGHLE 127
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA 79
+IE + +VN D G T L+ A+ G E+VE L + GADVN Q + LH AA
Sbjct: 62 IIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA 121
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
G + +VLL++GA+ + +D+ GKT D + + +E
Sbjct: 122 EDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN ++ + LHYAA
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
R +A +LL GANPD +D T + +A +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 1 MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
M+ C + S D L E I + D +T L+WA + G E+VEFL
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 61 ERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ G VN + S LH AA GR + K LL GA+ + +++G TPL A +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASK 116
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSS 73
SK+ + + GG + D T ++ A+A G +MV L A N + ++
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
LH A R AK L+ GA+ + +++ KTPL A+
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN ++ + LHYAA
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
R +A +LL GANPD +D T + +A +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 149
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 1 MQTCWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 60
M+ C + S + L E+I + D +T L+WA + G E+VEFL
Sbjct: 1 MEGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 61 ERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ G VN + S LH AA GR + K LL GA + +++G TPL A +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK 116
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSS 73
SK+ + + GG + D T ++ A+A G +M+ L A N + ++
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT 174
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
LH A R AK+L+ GA+ + +++ KTPL A+
Sbjct: 175 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++E + GV VN DD G + L+ A++ G E+V+ L +GA VN ++ + LHYAA
Sbjct: 56 IVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
R +A +LL GANPD +D T + +A +
Sbjct: 116 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 150
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHG 94
D +T L+WA + G E+VEFL + G VN + S LH AA GR + K LL G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 95 ANPDLRDEDGKTPLDKARER 114
A + +++G TPL A +
Sbjct: 98 AQVNAVNQNGCTPLHYAASK 117
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSS 73
SK+ + + GG + D T ++ A+A G +M+ L A N + ++
Sbjct: 116 SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT 175
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
LH A R AK+L+ GA+ + +++ KTPL A+
Sbjct: 176 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVA 87
GV V+ +G T L+ AS +G ++V+FL + ADVN + S LH AA G +
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 88 KVLLRHGANPDLRDEDGKTPLDKAR 112
+LL++GA+P+ DG TPL A+
Sbjct: 361 TLLLKNGASPNEVSSDGTTPLAIAK 385
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 41 QTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANPD 98
+T L+ A+ G E+ ++L + A VN + + LH AA G ++ K+LL + ANP+
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 99 LRDEDGKTPLDKARERVDEGHRE 121
L G TPL A EGH E
Sbjct: 108 LATTAGHTPLHIAAR---EGHVE 127
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
G T L+ A+ G EMV L + A+ N G +S + LH A G VA VL++HG
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 98 DLRDEDGKTPLDKA 111
D G TPL A
Sbjct: 305 DATTRMGYTPLHVA 318
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGAD----VNKGQRSSSLHYAACFGRPSVAKV 89
N G T L+ A+ G E V L E+ A KG + LH AA +G+ VA++
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVRVAEL 164
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
LL A+P+ ++G TPL A
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVA 186
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
M G T L+ A+ +G + E L ER A N ++ + LH A + K+LL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 94 GANPDLRDEDGKTPLDKARER 114
G +P +G TPL A ++
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQ 222
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLL 91
N + G T L+ + G + + L + G V+ R + LH A+ +G + K LL
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 92 RHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+H A+ + + + G +PL +A + +GH +
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQ---QGHTD 358
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
G T L+ A+ E+ L + G N Q + LH AA G + +LL AN
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 98 DLRDEDGKTPLDKARERVDEGH 119
+L ++ G TPL + EGH
Sbjct: 272 NLGNKSGLTPLHLVAQ---EGH 290
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LH A+ G + K LL+ GA+P++ + +TPL A GH E
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAAR---AGHTE 61
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAA 79
+ E + S G VN D G+T L W+ FG EM FL E GA+VN + + L A+
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS 142
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
+GR + K LL GA+ RD G T AR
Sbjct: 143 KYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLL 91
N+ D +T L A G + ++ L E + + S++L +A R +A+ LL
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 92 RHGANPDLRDEDGKTPL 108
G+N + +D GKTPL
Sbjct: 89 SKGSNVNTKDFSGKTPL 105
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 18 DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSSSL 75
+ D L E + G VN D+ G T L WASAFG E V FL E GAD + +R S+L
Sbjct: 14 ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL 73
Query: 76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
A+ G + +LL + ++ D +G TPL
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAK 88
V++N D G T L +A + VE L RGAD+ S + + A G V +
Sbjct: 93 VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Query: 89 VLLRH 93
V+ H
Sbjct: 153 VIENH 157
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 18 DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSSSL 75
+ D L E + G VN D+ G T L WASAFG E V FL E GAD + +R S+L
Sbjct: 14 ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL 73
Query: 76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
A+ G + +LL + ++ D +G TPL
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
G+T L+ A+ G E+V+ L E GADVN ++ + LH AA G V K+LL GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 DLRDEDGKTPLDKA 111
+ +D++G+TPL A
Sbjct: 62 NAKDKNGRTPLHLA 75
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
+++ + G +VN D G+T L+ A+ G E+V+ L E GADVN ++ + LH AA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
Query: 80 CFGRPSVAKVLLRHGA 95
G V K+LL GA
Sbjct: 77 RNGHLEVVKLLLEAGA 92
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 15 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS- 72
R D AL + ++ +V+ +D+ G+T L + + G+ + V L E GAD++ + R
Sbjct: 53 RKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 73 -SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
++LH AA + RP V + L+ GA+ ++ DE G T L+ ARE
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 15 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS- 72
R D AL + ++ +V+ +D+ G+T L + + G+ + V L E GAD++ + R
Sbjct: 54 RKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111
Query: 73 -SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
++LH AA + RP V + L+ GA+ ++ DE G T L+ ARE
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 20 DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSSSLHY 77
D + I G + D+ T L+WA+ G MV L + GAD + G+ S +H
Sbjct: 56 DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Query: 78 AACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
AA FG S+ L+ G + D+ D++G TPL A R
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR 152
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEM--VEFLCERGADVNKG---QRSSSL 75
+++ + + G +V+ MD G T L WA A+ T + L VN G ++++L
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Query: 76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
H+A G +V +LL GAN D ++ G++ LD A++R
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 29 GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACFGRPS 85
G +V D TLL+WA+ ++V++ +GA V++ S+ LH+A G S
Sbjct: 31 AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90
Query: 86 VAKVLLRHGANPDLRDEDG 104
+ L+++GA+P L D +G
Sbjct: 91 MVVQLMKYGADPSLIDGEG 109
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYA 78
A++E + G +N M+ T L+ A++ G +++V+ L + AD+N + LHYA
Sbjct: 48 AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 107
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+G+ VA+ L+ +GA + ++ G+ P+DKA+ + E RE
Sbjct: 108 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 150
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
+D+ ++N DD G + L+WA G +VE L RGA +N R + LH AA G
Sbjct: 20 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 79
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ + LL++ A+ + +E G PL A
Sbjct: 80 RDIVQKLLQYKADINAVNEHGNVPLHYA 107
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAA 79
++E + + +VN +DD+G++ L+WA+A + L + GA D+ + + L AA
Sbjct: 30 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 89
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
G AKVLL H AN D+ D + P D A+ER+
Sbjct: 90 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 125
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANP 97
G T L A+ + M+E L ADVN S+LH+AA A VLL++GAN
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 74
Query: 98 DLRDEDGKTPL 108
D+++ +TPL
Sbjct: 75 DMQNNKEETPL 85
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYA 78
A++E + G +N M+ T L+ A++ G +++V+ L + AD+N + LHYA
Sbjct: 53 AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+G+ VA+ L+ +GA + ++ G+ P+DKA+ + E RE
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 155
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
+D+ ++N DD G + L+WA G +VE L RGA +N R + LH AA G
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ + LL++ A+ + +E G PL A
Sbjct: 85 RDIVQKLLQYKADINAVNEHGNVPLHYA 112
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAA 79
++E + + +VN +DD+G++ L+WA+A + L + GA D+ + + L AA
Sbjct: 104 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAA 163
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
G AKVLL H AN D+ D + P D A+ER+
Sbjct: 164 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 199
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANP 97
G T L A+ + M+E L ADVN S+LH+AA A VLL++GAN
Sbjct: 89 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 148
Query: 98 DLRDEDGKTPL 108
D+++ +TPL
Sbjct: 149 DMQNNKEETPL 159
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 57 EFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+F+ + + N+ R+ ++LH AA + R AK LL A+ ++D G+TPL A
Sbjct: 6 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19 TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
+ ++E + + +VN +DD+G++ L+WA+A + L + GA D+ + + L
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
AA G AKVLL H AN D+ D + P D A+ER+
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 57 EFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+F+ + + N+ R+ ++LH AA + R AK LL A+ +++D G+TPL A
Sbjct: 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR 83
I G N D G+T L+ A+ + + + L E AD N + LH A
Sbjct: 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70
Query: 84 PSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
V ++L+R+ A + D R DG TPL A EG E
Sbjct: 71 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19 TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
+ ++E + + +VN +DD+G++ L+WA+A + L + GA D+ + + L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
AA G AKVLL H AN D+ D + P D A+ER+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 17 KDTDALI-ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSS 73
+D A+I + I G N D G+T L+ A+ + + + L E AD N +
Sbjct: 33 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92
Query: 74 SLHYAACFGRPSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
LH A V ++L+R+ A + D R DG TPL A EG E
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19 TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
+ ++E + + +VN +DD+G++ L+WA+A + L + GA D+ + + L
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
AA G AKVLL H AN D+ D + P D A+ER+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 57 EFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+F+ + + N+ R+ ++LH AA + R AK LL A+ +++D G+TPL A
Sbjct: 41 DFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19 TDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLH 76
+ ++E + + +VN +DD+G++ L+WA+A + L + GA D+ + + L
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
AA G AKVLL H AN D+ D + P D A+ER+
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 235
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 17 KDTDALI-ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSS 73
+D A+I + I G N D G+T L+ A+ + + + L E AD N +
Sbjct: 34 EDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 93
Query: 74 SLHYAACFGRPSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
LH A V ++L+R+ A + D R DG TPL A EG E
Sbjct: 94 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 142
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
+ K +L+E RS + + L+ + V + D T L+ A+ + +V+ L + GA
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 65 DVNKGQRSS--SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
DV+ + LH A +G V ++LL+HGA + D TPL +A +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK 134
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAA 79
+++ + G +V+ D G L+ A ++G E+ E L + GA VN + + LH AA
Sbjct: 73 IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA-----RERV 115
R V +LL HGA+P L + GK+ +D A RER+
Sbjct: 133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 53 QEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK 110
+++ E L +GA+VN+ + + LH AA V +VL +HGA + D G+T L +
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR 286
Query: 111 A 111
A
Sbjct: 287 A 287
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
R VA++LLR GAN + +++D TPL A ER
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAER 257
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 65
++E + G ++N +D +GQT L+ A+ G + L G+D
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---VNKGQRSSSLHYAACFGRPSVAKV 89
+N D+ G T L WA+A G +VEFL + GAD + KG R S+L A G + K+
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGYTDIVKM 87
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
LL G + + D +G TPL A
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYA 109
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYA 78
A++E + G + + ++ L+ A + G ++V+ L + G DVN+ + L YA
Sbjct: 50 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
K+LL GA+P + + G +D A
Sbjct: 110 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSS 73
SK +++ + GV+VN D G T L +A + V+ L E GAD + +
Sbjct: 78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 137
Query: 74 SLHYAACFGRPSVAKVLLRH 93
S+ A G SV +V+ H
Sbjct: 138 SMDLAVALGYRSVQQVIESH 157
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS-- 73
S DT+ ++ ++ G ++N+ + G T L+ A +MV+FL E GA++N+
Sbjct: 50 SGDTEEVLRLLERGA-DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI 108
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
LH AA G +A+ L+ GA+ + +G TPLD
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D G L S+ T+E++ L ERGAD+N ++LH A + K L+ +GA
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 96 NPDLRDEDGKTPLDKA 111
N + D +G PL A
Sbjct: 98 NINQPDNEGWIPLHAA 113
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
G T L+ A+A G E+++ L + DVN + LH AA +G+ ++L+ + +
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 98 DLRDEDGKTPLDKARERV 115
+ ++ G+T D A E +
Sbjct: 259 EAVNKVGQTAFDVADEDI 276
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---VNKGQRSSSLHYAACFGRPSVAKV 89
+N D+ G T L WA+A G +VEFL + GAD + KG R S+L A G + K+
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGYTDIVKM 85
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
LL G + + D +G TPL A
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYA 107
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYA 78
A++E + G + + ++ L+ A + G ++V+ L + G DVN+ + L YA
Sbjct: 48 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 107
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
K+LL GA+P + + G +D A
Sbjct: 108 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSS 73
SK +++ + GV+VN D G T L +A + V+ L E GAD + +
Sbjct: 76 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 135
Query: 74 SLHYAACFGRPSVAKVLLRH 93
S+ A G SV +V+ H
Sbjct: 136 SMDLAVALGYRSVQQVIESH 155
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD---VNKGQRSSSLHYAACFGRPSVAKV 89
+N D+ G T L WA+A G +VEFL + GAD + KG R S+L A G + K+
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-RESALSLACSKGYTDIVKM 103
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
LL G + + D +G TPL A
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYA 125
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYA 78
A++E + G + + ++ L+ A + G ++V+ L + G DVN+ + L YA
Sbjct: 66 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 125
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
K+LL GA+P + + G +D A
Sbjct: 126 VHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD--VNKGQRSS 73
SK +++ + GV+VN D G T L +A + V+ L E GAD + +
Sbjct: 94 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYN 153
Query: 74 SLHYAACFGRPSVAKVLLRH 93
S+ A G SV +V+ H
Sbjct: 154 SMDLAVALGYRSVQQVIESH 173
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANP 97
G T L+ A+ G E V+ L +GADVN + ++ LH AA G + K+LL GA+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
+ R +DG TP A++ GH E
Sbjct: 69 NARSKDGNTPEHLAKK---NGHHE 89
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSL--HYAAC 80
++ + S G +VN G T L+ A+ G E+V+ L +GADVN + + H A
Sbjct: 25 VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Query: 81 FGRPSVAKVLLRHGANPDLR 100
G + K+L GA+ + R
Sbjct: 85 NGHHEIVKLLDAKGADVNAR 104
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
+++ + + G +VN G T + A G E+V+ L +GADVN
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
G T L A+ + MVE L AD+N S ++LH+AA +LL H AN
Sbjct: 118 GTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR 177
Query: 98 DLRDEDGKTPL 108
D +D+ +TPL
Sbjct: 178 DAQDDKDETPL 188
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAA 79
++E + + ++N D+ G+T L+WA+A E V L A D + + L AA
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
G +K LL + AN ++ D + P D A ER+
Sbjct: 193 REGSYEASKALLDNFANREITDHMDRLPRDVASERL 228
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 52 TQEMVEFLCERGADVNKGQRSS---SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
T +++ L +GA++N + SLH AA F R AK LL GA+ + +D G+TPL
Sbjct: 29 TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
Query: 109 DKA 111
A
Sbjct: 89 HAA 91
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGR 83
+ +G ++VN DD G T + WA+ + ++V+ L +G+D+N + + LH+AA G
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLD-KARER 114
+A++LL + + G +PL ARE
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAA 79
L++ + S G ++N D+ L+WA+ G ++ E L D++ S LH AA
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
R + L ++ L++++G+TPL A
Sbjct: 186 RENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ S LH AA G + +L++ GAN D ED +TPL +A E
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN 54
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 29 GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSV 86
G ++ + +T L A+ E V++L + GA D + S+ LH AA G V
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 87 AKVLLRHG-ANPDLRDEDGKTPLDKARE 113
+ LL +G + + +D+ G TP+ A E
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATE 120
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 63
C P L +C + + + + G+ VN G + L+ A+ G +++ L + G
Sbjct: 53 CHP---LCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG 109
Query: 64 ADVNKGQRSS----SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
A N G R++ LH A G V K LL A P+ +D G TPL A GH
Sbjct: 110 A--NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA---CSGGH 164
Query: 120 RE 121
E
Sbjct: 165 HE 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLL 91
N D G T L +A + G E+V L + GA +N +++LH A V ++LL
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
Query: 92 RHGANPDLRDEDGKTPLDKARE 113
HGA+ + ++ +T +D A +
Sbjct: 206 LHGASVQVLNKRQRTAVDCAEQ 227
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 44 LNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRD 101
L+ A G ++V+ L + A NK S + L YA G + +LL+HGA+ + +
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 102 EDGKTPLDKA 111
G T L +A
Sbjct: 183 NKGNTALHEA 192
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-- 67
L+E +DT + E + +V+ +D G T LN A E+ + L +RGAD+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 68 KGQRSSSLHYAACFGRPSVAKVLLRHGANPDL 99
S YA GR + +L+H A PDL
Sbjct: 69 NSISDSPYLYAGAQGRTEILAYMLKH-ATPDL 99
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 20 DALIETIDSGGVE-VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYA 78
+ALI + G ++ V + + G+ +++ + FG ++E + G R + Y
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV---------GLREGNQLY- 157
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ K+L+ +GA+ ++D G+T +D A ++
Sbjct: 158 -----QDIVKLLMENGADQSIKDNSGRTAMDYANQK 188
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 30 GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADVNKGQRSS--SLHYAACFGRP 84
G +VN+++ GQ T L A+A + EFL + GA+VN+ + LH+A G
Sbjct: 223 GADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
+A + L+ GA+ RD +G+ PL A E +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 30 GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADVNKGQRSS--SLHYAACFGRP 84
G +VN+++ GQ T L A+A + EFL + GA+VN+ + LH+A G
Sbjct: 223 GADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
+A + L+ GA+ RD +G+ PL A E +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 54 EMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
++V+ L E GA+VN + + LH A R + ++LLRHGA+P LR ++G TP
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 40/141 (28%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMD-----------------DVGQTLL-------- 44
LI+ ++++D D L++ + GG VNF + D+ + LL
Sbjct: 9 LIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 45 ---NWASAF------GTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
N A+ F G+ ++++ +GADVN+ ++ AA +G+ K L +
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 94 GANPDLRDEDGKTPLDKARER 114
GAN +LR KT D+ R R
Sbjct: 128 GANVNLRR---KTKEDQERLR 145
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 50/143 (34%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-------------K 68
L++ S G +VN D G T A+ +G + ++FL +RGA+VN K
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146
Query: 69 GQRSSSLHYA--------------------AC--FGR---------------PSVAKVLL 91
G ++ + A AC GR ++ +LL
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 206
Query: 92 RHGANPDLRDEDGKTPLDKARER 114
HGA+ ++R E GKTPL A E+
Sbjct: 207 DHGADVNVRGERGKTPLILAVEK 229
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
K LI + K + ++ +E+N D G+T L A +++ E LC+RGA
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Query: 67 NKG 69
+ G
Sbjct: 280 DCG 282
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 30 GVEVNFMDDVGQ---TLLNWASAFGTQEMVEFLCERGADVNKGQRSS--SLHYAACFGRP 84
G +VN+++ GQ T L A+A + EFL + GA+VN+ + LH+A G
Sbjct: 223 GADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHT 281
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
+A + L+ GA+ RD +G+ PL A E +
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNKGQR--SSSLHYAACFGRPSVA 87
V VN +D G T L WA G +++VE L + ++N+ + ++LH AA G +
Sbjct: 97 VGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 88 KVLLRHGANPDLRDEDGKTPLDKA 111
++LL GA DLR+ + K D A
Sbjct: 157 QLLLAKGARTDLRNIEKKLAFDXA 180
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 54 EMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
++V+ L E GA+VN + + LH A R + ++LLRHGA+P LR ++G TP
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
K LI + K + ++ +E+N D G+T L A +++ E LC+RGA
Sbjct: 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299
Query: 67 NKGQ--RSSSLHYAACFGRPSVAKVLLRHGANPDL 99
+ G ++ +Y S+ KVLL HGA D
Sbjct: 300 DCGDLVMTARRNY-----DHSLVKVLLSHGAKEDF 329
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 40/141 (28%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMD-----------------DVGQTLL-------- 44
LI+ ++++D D L++ + GG VNF + D+ + LL
Sbjct: 29 LIKAVQNEDVD-LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 45 ---NWASAF------GTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRH 93
N A+ F G+ ++++ +GADVN+ ++ AA +G+ K L +
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 147
Query: 94 GANPDLRDEDGKTPLDKARER 114
GAN +LR KT D+ R R
Sbjct: 148 GANVNLRR---KTKEDQERLR 165
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 50/143 (34%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--------- 72
L++ S G +VN D G T A+ +G + ++FL +RGA+VN +++
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 166
Query: 73 ---SSLHYAACFGRPSVAKV--------------------------------------LL 91
++L AA G V K+ LL
Sbjct: 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL 226
Query: 92 RHGANPDLRDEDGKTPLDKARER 114
HGA+ ++R E GKTPL A E+
Sbjct: 227 DHGADVNVRGERGKTPLILAVEK 249
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADVN + + LH AA G + +VLL+ GA
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 96 NPDLRDEDGKTPLD 109
+ + +D+ GKT D
Sbjct: 60 DVNAQDKFGKTAFD 73
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +VN D G T L+ A+ G E+VE L + GADVN
Sbjct: 4 KKLLEAARAGQDDE-VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGAN 96
G T L+ A EMV L + GAD+NK + + + LH A SV ++LL+ GA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 97 PDLRDEDGKTPLDKARER 114
P R G+TPL A R
Sbjct: 218 PTARMYGGRTPLGSALLR 235
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGAN 96
G T L+ A EMV L + GAD+NK + + + LH A SV ++LL+ GA+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
Query: 97 PDLRDEDGKTPLDKARER 114
P R G+TPL A R
Sbjct: 218 PTARMYGGRTPLGSALLR 235
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++ + +++ D D + + + + G +VN + G+ L++A+ G E++EFL +GAD+N
Sbjct: 4 KEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ + L A G S K+LL GA+ ++ DG T L+
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADV ++ S LH AA G V K+LL GA
Sbjct: 5 DLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 96 NPDLRDEDGKTPLD 109
+ + +D+ GKT D
Sbjct: 64 DVNAQDKFGKTAFD 77
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++L+E R+ D + + + G +V D G T L+ A+ G E+V+ L E GADVN
Sbjct: 8 KKLLEAARAGQDDE-VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++ + +++ D D + + + + G +VN + G+ L++A+ G E++EFL +GAD+N
Sbjct: 9 KEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 68 KGQRS--SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ + L A G S K+LL GA+ ++ DG T +
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 13 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----K 68
C+R AL+++ G +++ + G T L+ A QE V+ L ERGAD++ K
Sbjct: 94 CLR-----ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 69 GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
RS +H A S+ ++LL+HGAN + + G + L A R
Sbjct: 149 SGRSPLIH-AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 30 GVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSV 86
G +++ +D G++ L A + MV+ L + GA+VN S S+LH A+ G +
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL 198
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARER 114
+ L+R GA+ L++ TPL AR R
Sbjct: 199 VRTLVRSGADSSLKNCHNDTPLMVARSR 226
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCE------RGADVNKGQRSSSLHYAACFGRPSVAKVL 90
D+ G T L+ A G V L R D+ R + LH A PSV ++L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 91 LRHGANPDLRDEDGKT 106
+ GA+P D G+T
Sbjct: 66 VTAGASPMALDRHGQT 81
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKVLLRHGA 95
D+G+ LL A A G + V L GADV ++ S LH AA G V K+LL GA
Sbjct: 23 DLGKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 96 NPDLRDEDGKTPLD 109
+ +D+ GKT D
Sbjct: 82 DVXAQDKFGKTAFD 95
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
++L+E R+ D + + + G +V D G T L+ A+ G E+V+ L E GADV
Sbjct: 26 KKLLEAARAGQDDE-VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 55 MVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
+V+FL + +++K G+ S++LHY K+LLR A+ ++ +E G+TPLD A+
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
Query: 113 ERVDEGHRE 121
R+ H E
Sbjct: 247 -RLKHEHCE 254
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAAC 80
+E + G + N D G T L+ A G ++VE L + A VN Q S LH AA
Sbjct: 26 VEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
G + K+LL +GA+ + + G P+D
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 35 FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLR 92
F + G+TLL+ AS G VE+L + G+D N + + LH A G V ++LL+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 93 HGANPDLRDEDGKTPLDKA 111
H A + +PL A
Sbjct: 65 HKALVNTTGYQNDSPLHDA 83
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 38 DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS-LHYAACFGRPSVAKVLLRHGAN 96
D+G+ LL A A G + V L GA +S LH AA +G S +VLLR G +
Sbjct: 1 DLGKKLLEAARA-GQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 97 PDLRDEDGKTPLDKARERVDEGH 119
D R + +TPL A EGH
Sbjct: 60 RDARTKVDRTPLHMA---ASEGH 79
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 24 ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACF 81
E + GV + V +T L+ A++ G +VE L + GADVN + ++LH+A
Sbjct: 51 EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLD 109
V ++L+++GA+ + + KT D
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTAFD 138
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++E + G +VN D + T L+WA+ QE+VE L + GADV+
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADV 66
++L+E R+ D + + +G F D +G + L+ A+ +G E L G V
Sbjct: 4 KKLLEAARAGQDDEVRILMANGA---PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAG--V 58
Query: 67 NKGQRS----SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
++ R+ + LH AA G ++ +VLL+HGA+ + +D T L A E
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 55 MVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
+V+F+ + G D +++LHYAA + +P K+LL+ A +E G+T LD AR
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Query: 113 ER 114
++
Sbjct: 249 KK 250
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 4 CWPKRQ-LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL------------LNWASAF 50
C P+ Q L I ++D +++E +G D GQ L L+ A
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANG-------QDFGQPLPGPDAQAPEELVLHLAVKV 200
Query: 51 GTQ---EMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
Q +V+F+ + G D +++LHYAA + +P K+LL+ A +E G+
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 106 TPLDKARER 114
T LD AR++
Sbjct: 261 TALDIARKK 269
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSL--HYAACFGRPSVA 87
G N D G + ++ A+ G + ++ L E GADVN + SL H A G SV
Sbjct: 64 GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 123
Query: 88 KVLLRHGANPDL--RDEDGKTPLDKARER 114
L DL RD G TPL+ AR+R
Sbjct: 124 SFL---APESDLHHRDASGLTPLELARQR 149
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPL-DKAR 112
FG P+VA LL+ GA+P+++D G +P+ D AR
Sbjct: 50 MFGSPAVALELLKQGASPNVQDASGTSPVHDAAR 83
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAK 88
V + ++ G+T L FG+ + L ++GA +V +S +H AA G K
Sbjct: 33 VHPDALNRFGKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK 91
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
VL+ HGA+ + D G P+ A + EGH
Sbjct: 92 VLVEHGADVNALDSTGSLPIHLA---IREGH 119
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSL--HYAACFGRPSVA 87
G N D G + ++ A+ G + ++ L E GADVN + SL H A G SV
Sbjct: 66 GASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 125
Query: 88 KVLLRHGANPDL--RDEDGKTPLDKARER 114
L DL RD G TPL+ AR+R
Sbjct: 126 SFL---APESDLHHRDASGLTPLELARQR 151
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPL-DKAR 112
FG P+VA LL+ GA+P+++D G +P+ D AR
Sbjct: 52 MFGSPAVALELLKQGASPNVQDASGTSPVHDAAR 85
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAK 88
V + ++ G+T L FG+ + L ++GA +V +S +H AA G K
Sbjct: 35 VHPDALNRFGKTALQVM-MFGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLK 93
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
VL+ HGA+ + D G P+ A + EGH
Sbjct: 94 VLVEHGADVNALDSTGSLPIHLA---IREGH 121
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGAN 96
G T L+ AS G +VE L GADVN + ++LH A P + +LL+ GA+
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 97 PDLRDEDGKTP 107
+ G +P
Sbjct: 174 VNRVTYQGYSP 184
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ + LH A +P +A+ LL G +P+LRD G TPL A E+
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 85
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 22 LIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAAC 80
++E + S G +VN + G+T L+ A ++V L + GADVN+ Y
Sbjct: 129 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 188
Query: 81 FGRPS 85
+GRPS
Sbjct: 189 WGRPS 193
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGAN 96
G T L+ AS G +VE L GADVN + ++LH A P + +LL+ GA+
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 97 PDLRDEDGKTP 107
+ G +P
Sbjct: 177 VNRVTYQGYSP 187
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ + LH A +P +A+ LL G +P+LRD G TPL A E+
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ 88
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 22 LIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAAC 80
++E + S G +VN + G+T L+ A ++V L + GADVN+ Y
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Query: 81 FGRPSV 86
+GRPS
Sbjct: 192 WGRPST 197
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHY---------------AACFGRP 84
GQT L+ A +V L RGA V+ S HY AAC G
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 85 SVAKVLLRHGANPDLRDEDGKTPL 108
+ ++L+ HGA+ +D G T L
Sbjct: 135 EIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 57 EFLCERGADVN----------KGQRSSSLHYAACFGRPSVAKVLL-RHGANPDLRDEDGK 105
+ L E+GA V+ K + ++LHYAA + K L+ G+N D +DEDGK
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 106 TPLDKARE 113
TP+ A +
Sbjct: 315 TPIXLAAQ 322
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVA 87
G N D G + ++ A+ G + ++ L E GADVN G + +H A G +V
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 88 KVLLRHGANPDL--RDEDGKTPLDKARER 114
L A DL RD G TPL+ A +R
Sbjct: 118 SFL---AAESDLHRRDARGLTPLELALQR 143
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAK 88
V + ++ G+T L FG+ + L ++GA +V +S +H AA G K
Sbjct: 27 VHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK 85
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
VL+ HGA+ ++ D G P+ A V EGH
Sbjct: 86 VLVEHGADVNVPDGTGALPIHLA---VQEGH 113
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVA 87
G N D G + ++ A+ G + ++ L E GADVN G + +H A G +V
Sbjct: 64 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 123
Query: 88 KVLLRHGANPDL--RDEDGKTPLDKARER 114
L A DL RD G TPL+ A +R
Sbjct: 124 SFL---AAESDLHRRDARGLTPLELALQR 149
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQRSSSLHYAACFGRPSVAK 88
V + ++ G+T L FG+ + L ++GA +V +S +H AA G K
Sbjct: 33 VHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK 91
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
VL+ HGA+ ++ D G P+ A V EGH
Sbjct: 92 VLVEHGADVNVPDGTGALPIHLA---VQEGH 119
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
++LH A C G + K L++ G N + D DG TPL
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHG 94
+D G T L+ A G E+V+FL + G +VN + LH AA V K L+ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 95 ANP-DLRDEDGKTPLDKARERVDEGHRE 121
A + D +T DK E ++EG+ +
Sbjct: 127 AAVFAMTYSDMQTAADKC-EEMEEGYTQ 153
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
++LH A C G + K L++ G N + D DG TPL
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHG 94
+D G T L+ A G E+V+FL + G +VN + LH AA V K L+ G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 95 ANP-DLRDEDGKTPLDKARERVDEGHRE 121
A + D +T DK E ++EG+ +
Sbjct: 127 AAVFAMTYSDMQTAADKC-EEMEEGYTQ 153
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 25/129 (19%)
Query: 2 QTCWPKRQL-IECIRSKDTDALIETIDSGGVEVNFMD----DV---GQTLLNWASAFGTQ 53
+TC PK L + R+ L++ + G F++ DV GQT L+ A +
Sbjct: 47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106
Query: 54 EMVEFLCERGADVNKGQRSS----------------SLHYAACFGRPSVAKVLLRHG-AN 96
VE L E+GADV+ R L AAC +P + L +G
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166
Query: 97 PDLRDEDGK 105
DLR +D +
Sbjct: 167 ADLRRQDSR 175
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
+R +EC+ S I GG + + +G T L A + V+ L E GADV
Sbjct: 110 RRGHVECVNS--------LIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADV 160
Query: 67 NKGQ-RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
N+G+ + S LH A +A +L+ GA+ ++ +GK P++
Sbjct: 161 NQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVE 204
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 47 ASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDG 104
A+ G Q + L +G VN S LH A G S K+LL+HGA + D
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 105 KTPLDKA 111
TPL A
Sbjct: 70 HTPLFNA 76
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACF 81
++ + G +VN + T L A G+ + V L + GA V + +S +H AA
Sbjct: 52 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 111
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
G L+ +G N D + TPL A E
Sbjct: 112 GHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCER--GADVNK--GQRSSSLHYAACFGRPSVAKV 89
++ DD G T + A + G E+V+ L +R D+NK Q + LH A V++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
L+ +GA+ ++D+ + PL +A
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA 147
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS-----SSLHYAACFGRPSVAKVLL 91
D G+ L+W+ +F E+ FL + +VN + H A G V K L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 92 RHGANPDLR 100
PDL
Sbjct: 93 DRPLKPDLN 101
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKV 89
++N + + G T L+ A E+ +FL E GA V + + LH AA G + ++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 90 LLRHGANP-DLRDEDGKTPLDKARERVDEGH 119
L G + + +D+ G TPL A + EGH
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHA---LAEGH 186
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCER--GADVNK--GQRSSSLHYAACFGRPSVAKV 89
++ DD G T + A + G E+V+ L +R D+NK Q + LH A V++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
L+ +GA+ ++D+ + PL +A
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA 147
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS-----SSLHYAACFGRPSVAKVLL 91
D G+ L+W+ +F E+ FL + +VN + H A G V K L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 92 RHGANPDLR 100
PDL
Sbjct: 93 DRPLKPDLN 101
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKV 89
++N + + G T L+ A E+ +FL E GA V + + LH AA G + ++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 90 LLRHGANP-DLRDEDGKTPLDKARERVDEGH 119
L G + + +D+ G TPL A + EGH
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHA---LAEGH 186
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCER--GADVNK--GQRSSSLHYAACFGRPSVAKV 89
++ DD G T + A + G E+V+ L +R D+NK Q + LH A V++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
L+ +GA+ ++D+ + PL +A
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA 147
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS-----SSLHYAACFGRPSVAKVLL 91
D G+ L+W+ +F E+ FL + +VN + H A G V K L
Sbjct: 33 DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Query: 92 RHGANPDLR 100
PDL
Sbjct: 93 DRPLKPDLN 101
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKV 89
++N + + G T L+ A E+ +FL E GA V + + LH AA G + ++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 90 LLRHGANP-DLRDEDGKTPLDKARERVDEGH 119
L G + + +D+ G TPL A + EGH
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHA---LAEGH 186
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 4 CWPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCER 62
W +QL + SKDT F DV G + +A A +V L
Sbjct: 9 TWKSKQLKSFLSSKDT---------------FKADVHGHSASYYAIADNNVRLVCTLLNA 53
Query: 63 GADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
GA N + LH AA + K+LL G + D+ G T L A VD G+ +
Sbjct: 54 GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA---VDSGNXQ 109
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 24 ETIDSGGVEVNFMDDVGQT--LLNWASAFGTQEMVEFLCE--RGADVN-KGQRS--SSLH 76
+ +DSG +V+ + G + +L + TQ+ +E + + R ++N K ++ ++L
Sbjct: 129 QLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALM 188
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
A GR V K LL A+ +++D+DG T L A E GH+E
Sbjct: 189 LAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE---HGHKE 230
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGKTPL-DKAR 112
G P +A+ LL GANPDL+D G + D AR
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGNAVIHDAAR 79
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS----SSLHYA 78
++T+ +VN D+ G L+ A+ G +VEFL + A N G R+ ++ A
Sbjct: 86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLA 144
Query: 79 ACFGRPSVAKVLLRHGA 95
+GR V ++ +GA
Sbjct: 145 RLYGRNEVVSLMQANGA 161
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 66
+R +EC+ S I GG + + +G T L A + V+ L E GADV
Sbjct: 166 RRGHVECVNS--------LIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADV 216
Query: 67 NKGQ-RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
N+G+ + S LH +A +L+ GA+ ++ +GK P++
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE 260
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 47 ASAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDG 104
A+ G Q + L +G VN S LH A G S K+LL+HGA + D
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 105 KTPLDKA 111
TPL A
Sbjct: 126 HTPLFNA 132
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAK 88
G +VN + T L A G+ + V L + GA V + +S +H AA G
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 174
Query: 89 VLLRHGANPDLRDEDGKTPLDKARE 113
L+ +G N D + TPL A E
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACE 199
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDG 104
G P +A+ LL GANPDL+D G
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTG 70
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS----SSLHYA 78
++T+ +VN D+ G L+ A+ G +VEFL + A N G R+ ++ A
Sbjct: 86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLA 144
Query: 79 ACFGRPSVAKVLLRHGA 95
+GR V ++ +GA
Sbjct: 145 RLYGRNEVVSLMQANGA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDG 104
G P +A+ LL GANPDL+D G
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTG 70
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS----SSLHYA 78
++T+ +VN D+ G L+ A+ G +VEFL + A N G R+ ++ A
Sbjct: 86 LQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLA 144
Query: 79 ACFGRPSVAKVLLRHGA 95
+GR V ++ +GA
Sbjct: 145 RLYGRNEVVSLMQANGA 161
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDG 104
G P +A+ LL GANPDL+D G
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTG 70
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS----SSLHYA 78
++T+ +VN D+ G L+ A+ G +VEFL + A N G R+ ++ A
Sbjct: 86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLA 144
Query: 79 ACFGRPSVAKVLLRHGA 95
+GR V ++ +GA
Sbjct: 145 RLYGRNEVVSLMQANGA 161
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 44 LNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLLRHGANPDL 99
L A+A G E V L E GAD N G+R + G VA++LL HGA P+
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM---MGSAQVAELLLLHGAEPNC 72
Query: 100 RDEDGKT-PL-DKARE 113
D T P+ D ARE
Sbjct: 73 ADPATLTRPVHDAARE 88
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDG 104
G P +A+ LL GANPDL+D G
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTG 70
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS----SSLHYA 78
++T+ +VN D+ G L+ A+ G +VEFL + A N G R+ ++ A
Sbjct: 86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS-NVGHRNHKGDTACDLA 144
Query: 79 ACFGRPSVAKVLLRHGA 95
+GR V ++ +GA
Sbjct: 145 RLYGRNEVVSLMQANGA 161
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 15 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQR 71
R ++ AL+E G N + G+ + G+ + E L GA+ N
Sbjct: 24 RVEEVRALLEA----GANPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPNCADPATL 78
Query: 72 SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ +H AA G VL R GA D+RD G+ P+D A E GHR+
Sbjct: 79 TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL---GHRD 125
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 50 FGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKT 106
G+ + E L GA+ N + +H AA G VL R GA D+RD G+
Sbjct: 54 MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL 113
Query: 107 PLDKARERVDEGHRE 121
P+D A E GHR+
Sbjct: 114 PVDLAEEL---GHRD 125
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 61 ERGADVNKGQRSSSLHYAACFGRPSV--AKVLLRHGANPDLRDEDGKTPLDKARE 113
E G+ V + ++LH+ G + K+L++ GA+P +D+ +TPL +A E
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXE 182
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 22/120 (18%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS-- 73
++ TD+L + +++ + + GQT L+ A +V L E GADV
Sbjct: 80 ARKTDSLKQFVNASYTDSYYK---GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFF 136
Query: 74 --------------SLHYAACFGRPSVAKVLLRHGANP---DLRDEDGKTPLDKARERVD 116
L AAC + ++ K LL++ P RD G T L E D
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
++LH A C S+ L+ GAN + D G TPL
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGA 95
G T L+ A +V+FL GA+VN + LH AA + L++HGA
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
L+ AA G S+ LL +GA+P + ++ G P+D
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 321
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 20 DALIETIDSGGVEVNFM---DDVGQTLLNWASAFGTQEMVEFLCERGAD 65
D+++E +D + N + D G T LN A+ G +V+ L + GAD
Sbjct: 260 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 31/132 (23%)
Query: 2 QTCWPKRQL-IECIRSKDTDALIETIDSGGVEVNFMD----DV---GQTLLNWASAFGTQ 53
+TC PK L + R+ L++ + G F++ D+ GQT L+ A +
Sbjct: 45 KTCLPKALLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCK 104
Query: 54 EMVEFLCERGADVNKGQRSS----------------SLHYAACFGRPSVAKVLLRHGANP 97
VE L +GADV+ R L AAC +P + L NP
Sbjct: 105 HYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYL---TENP 161
Query: 98 ----DLRDEDGK 105
D+R +D +
Sbjct: 162 HKKADMRRQDSR 173
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 36 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 76
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 77 NAACF-----ACILLSHGEENVIYGKDGVTPI 103
>pdb|2PQ4|A Chain A, Nmr Solution Structure Of Napd In Complex With Napa1-35
Signal Peptide
Length = 90
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 6 PKRQLIECIRSKDTDALIETIDS 28
P QLI + ++D++ LI+TI+S
Sbjct: 43 PSGQLIVVVEAEDSETLIQTIES 65
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 43 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 83
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 84 NAACF-----ACILLSHGEENVIYGKDGVTPI 110
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 42 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 82
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 83 NAACF-----ACILLSHGEENVIYGKDGVTPI 109
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 36 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 76
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 77 NAACF-----ACILLSHGEENVIYGKDGVTPI 103
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 42 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 82
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 83 NAACF-----ACILLSHGEENVIYGKDGVTPI 109
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 46 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 86
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 87 NAACF-----ACILLSHGEENVIYGKDGVTPI 113
>pdb|2JSX|A Chain A, Solution Structure Of The E. Coli Tat Proofreading
Chaperone Protein Napd
Length = 95
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 6 PKRQLIECIRSKDTDALIETIDS 28
P QLI + ++D++ LI+TI+S
Sbjct: 40 PSGQLIVVVEAEDSETLIQTIES 62
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 69 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 109
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 110 NAACF-----ACILLSHGEENVIYGKDGVTPI 136
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 43 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 83
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 84 NAACF-----ACILLSHGEENVIYGKDGVTPI 110
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 94 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 134
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 135 NAACF-----ACILLSHGEENVIYGKDGVTPI 161
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 92 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 132
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 133 NAACF-----ACILLSHGEENVIYGKDGVTPI 159
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 94 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 134
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 135 NAACF-----ACILLSHGEENVIYGKDGVTPI 161
>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|C Chain C, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 148
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 42 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 82
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 83 NAACF-----ACILLSHGEENVIYGKDGVTPI 109
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 69 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 109
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 110 NAACF-----ACILLSHGEENVIYGKDGVTPI 136
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 24/92 (26%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLH 76
KD +AL + S G +V +D C + D+ K
Sbjct: 92 KDAEALFKCFRSLGFDVIVYNDCS-------------------CAKMQDLLKKASEEDHT 132
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
AACF A +LL HG + +DG TP+
Sbjct: 133 NAACF-----ACILLSHGEENVIYGKDGVTPI 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,777,308
Number of Sequences: 62578
Number of extensions: 143216
Number of successful extensions: 882
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 348
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)