RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15272
(121 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 86.7 bits (215), Expect = 4e-23
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK- 68
L + + +++ + G +VN D+ G+T L+ A+ G E+V+ L E+GADVN
Sbjct: 11 LHLAASNGHLE-VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69
Query: 69 -GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++ LH AA G V K+LL+HGA+ + RD+DG+TPL A GH E
Sbjct: 70 DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA---AKNGHLE 120
Score = 75.5 bits (186), Expect = 9e-19
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPSVAKV 89
N D+ G+T L+ A++ G E+V+ L E GADVN G+ + LH AA G + K+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR--TPLHLAAKNGHLEIVKL 58
Query: 90 LLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
LL GA+ + RD+DG TPL A G+ +
Sbjct: 59 LLEKGADVNARDKDGNTPLHLA---ARNGNLD 87
Score = 52.4 bits (126), Expect = 7e-10
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVA 87
G +VN D G T L+ A+ G ++V+ L + GADVN + LH AA G V
Sbjct: 63 GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122
Query: 88 KVLL 91
K+LL
Sbjct: 123 KLLL 126
Score = 29.7 bits (67), Expect = 0.19
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 59
L R+ + D +++ + G +VN D G+T L+ A+ G E+V+ L
Sbjct: 77 LHLAARNGNLD-VVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 77.7 bits (192), Expect = 5e-20
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 44 LNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDED 103
L+ A+ G E+V+ L E+GADVN G ++LH AA G + K+LL HGA+ + +D+D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 104 GKTPLDKARERVDEGHRE 121
G T L A G+ E
Sbjct: 61 GNTALHLA---ARNGNLE 75
Score = 67.3 bits (165), Expect = 6e-16
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 69
L ++ + + + ++ G +VN D T L+ A+ G E+V+ L E GADVN
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 70 QRS--SSLHYAACFGRPSVAKVLLRHGANPDLRD 101
+ ++LH AA G + K+LL HGA+ +L+D
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 59.9 bits (145), Expect = 9e-12
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 14 IRSKDTDALIET-----IDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVN 67
I K D +IE + S G ++N D G T L++A+ Q + E L GA+VN
Sbjct: 136 IDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN 195
Query: 68 KGQR--SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
+ +S LH+A + +LL +GA+ D RD+ G TPL +
Sbjct: 196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC 245
Score = 42.6 bits (100), Expect = 1e-05
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ-EMVEFLCERGA 64
P ++ L+E G + D G T L+ + + ++++ L E G
Sbjct: 204 PLHHAVKHYNKPIVHILLEN----GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGV 259
Query: 65 DVNKGQRS----SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
DVN + ++LH + K+LL +GA+ + + TPL A
Sbjct: 260 DVN-AKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSA 307
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 56.4 bits (135), Expect = 1e-10
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 13 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ-----EMVEFLCERGADVN 67
SK D +++ + + G +VN D G T L+ A+ G E+ + L E GAD++
Sbjct: 79 SAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD 138
Query: 68 KGQRS-----SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ LH+AA G + ++LL GA+P+ R+ G T LD
Sbjct: 139 VNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD 185
Score = 47.1 bits (111), Expect = 3e-07
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS----LHYAACFGRPS---- 85
D G+ L+ A++ G ++V+ L GADVN + + LH AA G P
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVN--AKDADGDTPLHLAALNGNPPEGNI 124
Query: 86 -VAKVLLRHGA---NPDLRDEDGKTPLDKA 111
VAK+LL GA +LRDEDG TPL A
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWA 154
Score = 39.0 bits (90), Expect = 2e-04
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 5 WPKRQLIECIRSKDTDALIETIDSGG---VEVNFMDDVGQTLLNWASAFGTQEMVEFLCE 61
LI + + S ++ + L A++ + +
Sbjct: 5 LSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDR 64
Query: 62 RGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
A + R LH AA G + K+LL GA+ + +D DG TPL A
Sbjct: 65 HLAARDLDGRLP-LHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLA 113
Score = 32.9 bits (74), Expect = 0.022
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 69
L + D D + +++G + N + G T L+ A+ G E+V+ L ++G ++
Sbjct: 151 LHWAALNGDADIVELLLEAGA-DPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209
Query: 70 Q 70
+
Sbjct: 210 K 210
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 55.8 bits (135), Expect = 3e-10
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQE--MVEFLCERGADVNKGQRS-- 72
K ++ + G + D +G T L+ + + + +V L G +N R
Sbjct: 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ 258
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ LHYAA F P + L+ GA+ + DG TPL
Sbjct: 259 TPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM 297
Score = 49.3 bits (118), Expect = 5e-08
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 52 TQEMVEFLCERGADVNK--GQRSSSLH-YAACFG-RPSVAKVLLRHGANPDLRDEDGKTP 107
T ++++ L + GADVN + LH Y + F P V ++LLR GA+ + D G TP
Sbjct: 96 TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTP 155
Query: 108 LD 109
L
Sbjct: 156 LA 157
Score = 48.9 bits (117), Expect = 7e-08
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQ---EMVEFLCERGADVNKGQRSSS--LHYAACFG-R 83
G +VNF + G+T L+ + ++ ++V L E GADVN +R LH
Sbjct: 37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT 96
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPL 108
V K+L++ GA+ + +D+ G+TPL
Sbjct: 97 LDVIKLLIKAGADVNAKDKVGRTPL 121
Score = 40.8 bits (96), Expect = 4e-05
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 13 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN-WASAFGTQE-MVEFLCERGADVNKGQ 70
+ + T +I+ + G +VN D VG+T L+ + S F ++ L +GADVN
Sbjct: 90 YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-- 147
Query: 71 RSSSLHYA-ACFGR-----PSVAKVLLRHGANPDLRDEDGKTPLD------KARERV 115
A + + ++L+ GA+ D+ ++ L K R R+
Sbjct: 148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI 204
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 53.9 bits (130), Expect = 1e-09
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 10 LIECIRSKDTDA-LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ--EMVEFLCERGADV 66
L+ I K ++E + G VN + G+ LL+ ++++ L ++G D+
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169
Query: 67 NKGQR------------------SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
N R + LHYA P K LL GANP+L ++ G TPL
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229
Score = 44.7 bits (106), Expect = 2e-06
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 22/112 (19%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASA--FGTQEMVEFLCERGADVN--KGQRSSSLHY 77
+++ + G VN D+ G T L +A + + +VE+L + GA+VN + LH
Sbjct: 88 IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147
Query: 78 AACFGRP--SVAKVLLRHGAN----------------PDLRDEDGKTPLDKA 111
+ + K+L+ G + +++D G TPL A
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199
Score = 35.4 bits (82), Expect = 0.004
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGRPS 85
GV +N D G T L++A E V++L + GA+ N G + LH A
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG--DTPLHIAILNNNKE 239
Query: 86 VAKVLLRHGAN 96
+ K+LL +G +
Sbjct: 240 IFKLLLNNGPS 250
Score = 33.9 bits (78), Expect = 0.010
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 54 EMVEFLCERGADVNKGQRSSS--LHYAACFGR-----PSVAKVLLRHGANPDLRDEDGKT 106
++V+ L + GAD+N +++S LHY + + K+LL +GAN + D +G T
Sbjct: 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT 108
Query: 107 PL 108
PL
Sbjct: 109 PL 110
Score = 30.8 bits (70), Expect = 0.12
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
L+ A V K+LL +GA+ + ++ TPL
Sbjct: 35 PVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPL 72
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 49.3 bits (118), Expect = 3e-09
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 61 ERGADVNK---GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
E G G ++ LH AA +G + + LL+ G + +LRD DG T LD A
Sbjct: 3 EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 50.7 bits (121), Expect = 2e-08
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 48 SAFGTQEMVEFLCERGADVN--KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
+A G L GAD N + LH A G V +VLL GA+P L D+DGK
Sbjct: 90 AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149
Query: 106 TPLDKARE 113
TPL+ A E
Sbjct: 150 TPLELAEE 157
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 48.7 bits (116), Expect = 6e-08
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 54 EMVEFLCERGADVN---KGQRSSSLHYAACFGR---PSVAKVLLRHGANPDLRDEDGKTP 107
E+++FL E GADVN + S+LH+ F + P + K+L+ G++ DEDGK
Sbjct: 67 EILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNL 126
Query: 108 L 108
L
Sbjct: 127 L 127
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 45.3 bits (108), Expect = 9e-08
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 71 RSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
++LH AA GR + K LL G + + DEDG T L A
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41
Score = 40.7 bits (96), Expect = 5e-06
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 42 TLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLL 91
T L+ A+ G E+V++L E+G D+N+ +++LH AA G V K+LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 26.4 bits (59), Expect = 1.2
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 10 LIECIRSKDTDA---LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 59
L + S + L+E GV++N D+ G T L+ A+ G E+++ L
Sbjct: 5 LHKAAISGRLELVKYLLEK----GVDINRTDEDGNTALHIAAENGNLEVLKLL 53
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 48.0 bits (114), Expect = 2e-07
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 11 IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ 70
I CI KD I+TI G++VN D +T L++A G E ++ L E GADVN
Sbjct: 99 IPCI-EKDM---IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED 154
Query: 71 RSSS--LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
+ +H A + K+LL GA +++D +G++PL A E D
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD 202
Score = 46.9 bits (111), Expect = 3e-07
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA--DVNKGQR 71
I+ D ++ I+ + G +VN DD G ++ A ++++ L E+GA +V
Sbjct: 132 IKKGDLES-IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190
Query: 72 SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
S LH AA +G + K+L+ HG + + ++G TPL A
Sbjct: 191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230
Score = 33.0 bits (75), Expect = 0.026
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 13 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN--KGQ 70
CI S D +A+ + I + G +N D T L A G ++VE + GAD+N +
Sbjct: 8 CIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTK 67
Query: 71 RSSSLHYAACFGRPSVAKVLLRHGAN------PDLRDEDGKTPLD 109
L A G + K+L+ +G + P + + KT LD
Sbjct: 68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD 112
Score = 30.3 bits (68), Expect = 0.22
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 35/138 (25%)
Query: 14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV-NKGQRS 72
I+ D +I+ + G N D+ G++ L+ A+ +G ++ L + G + NK +
Sbjct: 165 IKHNFFD-IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG 223
Query: 73 -SSLHYAACFGRPSV--------------------------------AKVLLRHGANPDL 99
+ LH A R ++ +LL H A+ +
Sbjct: 224 FTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISI 283
Query: 100 RDEDGKTPLDKARERVDE 117
+D G+ P+D A + +++
Sbjct: 284 KDNKGENPIDTAFKYINK 301
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 47.3 bits (112), Expect = 2e-07
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 7 KRQLIECIRSKDTDALIETIDSGGVEVNFMDDV----GQTLLNWASAFGTQEMVEFLCER 62
+ +L + + D A+ E +D G F DDV G T L+ A+ ++++ L R
Sbjct: 69 ESELHDAVEEGDVKAVEELLDLG----KFADDVFYKDGMTPLHLATILKKLDIMKLLIAR 124
Query: 63 GAD--VNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
GAD + + S LH A G ++L+ H A D+ D G TPL
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL 172
Score = 28.0 bits (62), Expect = 1.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 83 RPSVA-KVLLRHGANPDLRDEDGKTPLDKARERVD 116
R S A K+L++HGA PD++ D ++ L A E D
Sbjct: 46 RDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80
Score = 27.6 bits (61), Expect = 1.5
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 51 GTQEMVEFLCERGA---DVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTP 107
G + VE L + G DV + LH A + + K+L+ GA+PD+ + D +P
Sbjct: 79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP 138
Query: 108 LDKA 111
L A
Sbjct: 139 LHLA 142
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 43.3 bits (103), Expect = 3e-07
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 75 LHYAACFGRPSVAKVLLRHGANPDLRDE 102
LH AA G V K+LL GA+ + RD+
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 37.9 bits (89), Expect = 4e-05
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVN 67
G T L+ A+ G E+V+ L E GADVN
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVN 29
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 42.4 bits (100), Expect = 1e-05
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 21 ALIETIDSGGVEVNFMDD-------VGQTLLNWASAFGTQEMVEFLCERGADVN------ 67
+ + +D G T L+ A+ E+V+ L ERGA V
Sbjct: 102 LHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD 161
Query: 68 ---KGQRSSSLHY-------AACFGRPSVAKVLLRHGANPDLRDEDGKT 106
K Q S ++ AAC G PS+ +L A+ D G T
Sbjct: 162 FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNT 210
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 37.6 bits (88), Expect = 5e-05
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVN 67
G T L+ A+ G E+V+ L E GAD+N
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 34.2 bits (79), Expect = 0.001
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 75 LHYAACFGRPSVAKVLLRHGANPD 98
LH AA G + K+LL HGA+ +
Sbjct: 6 LHLAARNGNLELVKLLLEHGADIN 29
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 75 LHYAACFGRPSVAKVLLRHGANPDL 99
LH AA G V K+LL GA+ +
Sbjct: 6 LHLAAENGNLEVVKLLLDKGADINA 30
Score = 30.2 bits (69), Expect = 0.025
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNK 68
G+T L+ A+ G E+V+ L ++GAD+N
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 38.9 bits (90), Expect = 3e-04
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 30 GVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVNKGQR--SSSLHYAACFGR-PS 85
G +VN + G+T L + G E + L GADVN R + LH A+ R
Sbjct: 297 GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKD 356
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ LL GAN + RD KTP+ A R
Sbjct: 357 IVITLLELGANVNARDYCDKTPIHYAAVR 385
Score = 38.5 bits (89), Expect = 3e-04
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 65
P Q R+KD + T+ G VN D +T +++A+ ++ L + GAD
Sbjct: 344 PLHQASTLDRNKDI---VITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400
Query: 66 VNK-GQR-SSSLHYAACFGRPSVA-KVLLRHGANPDLRDEDGKTPLDKA 111
+ Q+ ++LH+A C P ++ K L+ GAN + +++D TPL A
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449
Score = 37.7 bits (87), Expect = 5e-04
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS-AFGTQEMVEFLCERGADVN- 67
L++ IR++D + + D+G VN +DD T L+ AS A +V L ERGADVN
Sbjct: 244 LLKAIRNEDLETSLLLYDAG-FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA 302
Query: 68 ---KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
KG+ L + ++ + L+ GA+ + D TPL +A
Sbjct: 303 KNIKGETPLYLMAKNGYDTENI-RTLIMLGADVNAADRLYITPLHQA 348
Score = 35.4 bits (81), Expect = 0.003
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 55 MVEFLCERGADVNKGQRSS--SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+ E L E GADVN +HYAA G + +LL +GA+ ++ D + L+ A
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
Score = 35.4 bits (81), Expect = 0.003
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 17 KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
+D + E + GG +VN D T +++A+ G +MV L GADVN
Sbjct: 155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205
Score = 30.0 bits (67), Expect = 0.27
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQ-EMVEFLCERGADVNKGQRSSSLHYAACF 81
++T+ G VN + T L++A + +++E L + GADVN +
Sbjct: 425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL 484
Query: 82 GRPSVAKVLLRHGANPDLRD 101
+ +LL +GA +LRD
Sbjct: 485 EYHGIVNILLHYGA--ELRD 502
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 36.4 bits (84), Expect = 0.002
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG--ADVNKGQRSSSLHYAACFGR 83
D+GG + LL AS G ++E L + D+ + + LH AA G
Sbjct: 514 GDNGGEHDDPNMAS--NLLTVAST-GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGY 570
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VLL+H N +RD +G T L A + H +
Sbjct: 571 EDCVLVLLKHACNVHIRDANGNTALWNA---ISAKHHK 605
Score = 31.8 bits (72), Expect = 0.073
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 57 EFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
+ L + G + + +S+L A G ++ + LL+ +PD+ D G+TPL A +
Sbjct: 511 DLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGY 570
Query: 117 E 117
E
Sbjct: 571 E 571
Score = 30.6 bits (69), Expect = 0.18
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
L + D A+ E + G + V+ D G T L A A +MV L GADV+K
Sbjct: 626 LCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683
Score = 29.8 bits (67), Expect = 0.30
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKV 89
V+ D G T L A + ++ L + + L AA + K
Sbjct: 581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKE 640
Query: 90 LLRHGANPDLRDEDGKTPLDKARERVDEGH 119
LL+ G N D D G T L A + E H
Sbjct: 641 LLKQGLNVDSEDHQGATALQVA---MAEDH 667
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 35.7 bits (82), Expect = 0.003
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++N +D G+TLL+ A + Q +V L E G+DVN
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVN 479
Score = 25.7 bits (56), Expect = 8.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPL 108
RP V K L+ HG P D++ T L
Sbjct: 208 RPEVVKCLINHGIKPSSIDKNYCTAL 233
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 35.4 bits (81), Expect = 0.003
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 53 QEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL-- 108
+ VE L RG N+ + LH A+ + +LL HGA+P+ D+ KTPL
Sbjct: 52 ERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYY 111
Query: 109 -----DKARERVD 116
D+ ER++
Sbjct: 112 LSGTDDEVIERIN 124
Score = 27.7 bits (61), Expect = 1.7
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 20 DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHY 77
+ +E + G N DD G L+ AS +V L GAD N + + L+Y
Sbjct: 52 ERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYY 111
Query: 78 AACFGRPSVAKV--LLRHGANPDLR-DEDGKTPL 108
+ + ++ L+++GA + DE+G PL
Sbjct: 112 LSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL 145
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 33.1 bits (75), Expect = 0.021
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 19/118 (16%)
Query: 5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERG 63
W +QL + SKD F DV G + L +A A +V L G
Sbjct: 9 WKSKQLKSFLSSKDA---------------FKADVHGHSALYYAIADNNVRLVCTLLNAG 53
Query: 64 ADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
A N + LH AA + K+LL G + D+ G T L A VD G+ +
Sbjct: 54 ALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA---VDSGNMQ 108
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 31.3 bits (71), Expect = 0.084
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 54 EMVEFLCERGADVN--KGQRSSSL--------HYAACFGRPSVAKVLLRHGANPDLRDED 103
++V+ GA+VN + S+ L Y + K+L+ +GA+ + ++ D
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHML---DIVKILIENGADINKKNSD 108
Query: 104 GKTPL 108
G+TPL
Sbjct: 109 GETPL 113
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 31.0 bits (70), Expect = 0.14
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 14 IRSKDTDALIETIDSGGVEVNFM-DDVGQTLLN--WASAFGTQEMVEFLCERGADVNKGQ 70
R D D + +D G V +N++ G +L+ + + +++E+LC G +VN
Sbjct: 150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQN 209
Query: 71 RS--SSLHYAACFGR--PSVAKVLLRHGANPDLRDEDGKTPL 108
+ LH G SV K ++ G + D++ +G +P+
Sbjct: 210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPI 251
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 30.5 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 54 EMVEFLCERGADVN-KGQRSSSLHYAACFGRPS---------VAKVLLRHGANPDLRDED 103
++V+ L + GADVN KG + L R + K+LL+ GA+ +L+ +
Sbjct: 51 KIVKLLIDNGADVNYKGYIETPL---CAVLRNREITSNKIKKIVKLLLKFGADINLKTFN 107
Query: 104 GKTPL 108
G +P+
Sbjct: 108 GVSPI 112
Score = 26.2 bits (58), Expect = 4.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 53 QEMVEFLCERGADVNKGQRSSS---LHYAACFGRPSVAKVLLRHGAN 96
+ +EFL G DVN+ R +S L+ + + K+L+ +GA+
Sbjct: 16 KNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGAD 62
>gnl|CDD|224821 COG1909, COG1909, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 167
Score = 28.4 bits (64), Expect = 0.60
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEG 118
V + L+ G PDL DGKT K RE VD+
Sbjct: 45 VTRNLIEVGLIPDLAIVDGKT---KRREPVDQN 74
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 28.8 bits (64), Expect = 0.75
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
++N +D G+TLL A G ++V +L E GA+VN
Sbjct: 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN 248
>gnl|CDD|146579 pfam04019, DUF359, Protein of unknown function (DUF359). This
family of archaebacterial proteins are about 170 amino
acids in length. They have no known function. The most
conserved portion of the protein contains the sequence
GEEDL that may be important for its function.
Length = 121
Score = 27.9 bits (63), Expect = 0.88
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V + LL+ G PDL DGKT RE V E R+
Sbjct: 1 VTENLLKAGIIPDLAIVDGKT----KREPVVEEVRK 32
>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau.
This model represents the well-conserved first ~ 365
amino acids of the translation of the dnaX gene. The
full-length product of the dnaX gene in the model
bacterium E. coli is the DNA polymerase III tau subunit.
A translational frameshift leads to early termination
and a truncated protein subunit gamma, about 1/3 shorter
than tau and present in roughly equal amounts. This
frameshift mechanism is not necessarily universal for
species with DNA polymerase III but appears conserved in
the exterme thermophile Thermus thermophilis [DNA
metabolism, DNA replication, recombination, and repair].
Length = 355
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 9 QLIECIRSKDTDALIETID---SGGVE-VNFMDD 38
+L+E I +KDT ++ +D GV+ F++D
Sbjct: 249 ELLEAILNKDTAEALKILDEILESGVDPEKFLED 282
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 10 LIECIRSKDTDALIETIDSGG-VEVNFMDDVGQTL 43
L+E +++D A IE +DSG N + D+ + +
Sbjct: 80 LVE--KNRDLLAAIEALDSGKPYHSNALGDLDEII 112
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Uncharacterized Proteins with
similarity to Ornithine and Diaminopimelate
Decarboxylases. This subfamily contains uncharacterized
proteins with similarity to ornithine decarboxylase
(ODC) and diaminopimelate decarboxylase (DapDC). ODC and
DapDC are fold type III PLP-dependent enzymes that
contain an N-terminal PLP-binding TIM-barrel domain and
a C-terminal beta-sandwich domain, similar to bacterial
alanine racemases. They exist as homodimers with active
sites that lie at the interface between the TIM barrel
domain of one subunit and the beta-sandwich domain of
the other subunit. ODC participates in the formation of
putrescine by catalyzing the decarboxylation of
ornithine, the first step in polyamine biosynthesis.
DapDC participates in the last step of lysine
biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
this subfamily may function as PLP-dependent
decarboxylases. Homodimer formation and the presence of
the PLP cofactor may be required for catalytic activity.
Length = 379
Score = 27.4 bits (61), Expect = 2.1
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 10 LIECIRSKDTDALIETID-SGGVEVNFMDD 38
L E I + I ID GG+ VNF +
Sbjct: 195 LAEEINRRVGRRQITRIDIGGGLPVNFESE 224
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 27.3 bits (60), Expect = 2.2
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 42 TLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACFGRPSVAKVLLRHGANPD 98
L +A + + L GADVN+ + L+ + G ++LL +GA+ +
Sbjct: 72 NPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADIN 131
Query: 99 LRDEDGKTPLDKA 111
++ D TP++ A
Sbjct: 132 IQTNDMVTPIELA 144
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 26.8 bits (59), Expect = 3.8
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLL 91
++N +D G+++L + + +VE+L + GAD+N + S C V+L
Sbjct: 402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC--------VIL 453
Query: 92 RHGANPDL 99
H P++
Sbjct: 454 AHACIPEI 461
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 26.4 bits (59), Expect = 4.2
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 73 SSLHYAACFGRPSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEG 118
S L AA K+L HG +PDL D L + +E D+G
Sbjct: 128 SWLPLAALING----KILCMHGGLSPDLTTLDDIRKLKRPQEPPDDG 170
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 26.2 bits (58), Expect = 4.3
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 5 WPKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS-AFGTQEMVEFLCER 62
+P+ L+ KD D + E I G+ + + G VE L E
Sbjct: 104 YPRASLVIMREGKDVDEVREIIKERGLNLVASGFAIHIMKKGVDKGVG----VEKLKEL 158
>gnl|CDD|147995 pfam06128, Shigella_OspC, Shigella flexneri OspC protein. This
family consists of the Shigella flexneri specific
protein OspC. The function of this family is unknown but
it is thought that Osp proteins may be involved in post
invasion events related to virulence. Since bacterial
pathogens adapt to multiple environments during the
course of infecting a host, it has been proposed that
Shigella evolved a mechanism to take advantage of a
unique intracellular cue, which is mediated through
MxiE, to express proteins when the organism reaches the
eukaryotic cytosol.
Length = 284
Score = 26.4 bits (58), Expect = 4.5
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 26 IDSGGVEVN--FMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
I+ G V+VN F + G T+L+ A +G +EM+ L + GA +++
Sbjct: 237 INRGLVDVNAKFEKVNSGDTMLDNAVKYGNREMIAALLKHGAILDR 282
>gnl|CDD|176661 cd07237, BphC1-RGP6_C_like, C-terminal domain of
2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC
1.13.11.39) 1 from Rhodococcus globerulus P6
(BphC1-RGP6) and similar proteins. This subfamily
contains the C-terminal, catalytic, domain of
BphC1-RGP6 and similar proteins. BphC catalyzes the
extradiol ring cleavage reaction of
2,3-dihydroxybiphenyl, the third step in the
polychlorinated biphenyls (PCBs) degradation pathway
(bph pathway). This subfamily of BphCs belongs to the
type I extradiol dioxygenase family, which require a
metal in the active site in its catalytic mechanism.
Polychlorinated biphenyl degrading bacteria demonstrate
a multiplicity of BphCs. For example, three types of
BphC enzymes have been found in Rhodococcus globerulus
(BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I
extradiol dioxygenases. BphC1-RGP6 has an internal
duplication, it is a two-domain dioxygenase which forms
octamers, and has Fe(II) at the catalytic site. Its
C-terminal repeat is represented in this subfamily.
BphC2-RGP6 and BphC3-RGP6 are one-domain dioxygenases,
they belong to a different subfamily of the
ED_TypeI_classII_C (C-terminal domain of type I, class
II extradiol dioxygenases) family.
Length = 154
Score = 26.0 bits (58), Expect = 4.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 30 GVEVNFMDDVGQTL 43
+EV +DDVG+
Sbjct: 78 MLEVTSLDDVGRAY 91
>gnl|CDD|216715 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalyzing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalyzed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme
catalyzes the formylation of AICAR with
10-formyl-tetrahydrofolate to yield FAICAR and
tetrahydrofolate. This is catalyzed by a pair of
C-terminal deaminase fold domains in the protein, where
the active site is formed by the dimeric interface of
two monomeric units. The last step is catalyzed by the
N-terminal IMP (Inosine monophosphate) cyclohydrolase
domain EC:3.5.4.10 (IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide)
to IMP.
Length = 315
Score = 26.2 bits (58), Expect = 5.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 69 GQRSSSLHYAACFGRPSVAKVLLRHGANP 97
++ S H F P V K LR+G NP
Sbjct: 58 RKQYSPKHPERTFTLPGVRKQSLRYGENP 86
>gnl|CDD|201652 pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential
subunit in the eukaryotic polymerases Pol I, II and III.
This family also contains the bacterial equivalent to
Rpb6, the omega subunit. Rpb6 and omega are structurally
conserved and both function in polymerase assembly.
Length = 57
Score = 24.5 bits (54), Expect = 5.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 91 LRHGANPDLRDEDGKTPLDKARERVDEG 118
L +GA P + +E P+ A E + +G
Sbjct: 24 LSYGAPPLVDEESEIKPVVIALEEIADG 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,066,985
Number of extensions: 510548
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 91
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)