RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15272
(121 letters)
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 96.7 bits (242), Expect = 3e-27
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G + N D G T L+ A G ++VE L + A VN Q S LH AA G
Sbjct: 31 QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVD 90
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K+LL +GA+ + + G P+D DE +
Sbjct: 91 IVKLLLSYGASRNAVNIFGLRPVDYT---DDESMKS 123
Score = 84.0 bits (209), Expect = 3e-22
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
G++ + G+TLL+ AS G VE+L + G+D N G + LH A G
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLK 57
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V ++LL+H A + +PL A GH +
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDA---AKNGHVD 90
Score = 62.8 bits (154), Expect = 4e-14
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
VN + L+ A+ G ++V+ L GA N G + Y
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL--RPVDYTDDESM 121
Query: 84 PSVAKVLLRHGAN 96
S+ + ++ ++
Sbjct: 122 KSLLLLPEKNESS 134
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 96.3 bits (241), Expect = 3e-27
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
+ G +VN + G+ L++A+ G E++EFL +GAD+N + L A G S
Sbjct: 28 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
K+LL GA+ ++ DG T + ++ +
Sbjct: 88 CVKLLLSKGADKTVKGPDGLTAFEAT---DNQAIKA 120
Score = 83.2 bits (207), Expect = 4e-22
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSVAKVLLRHGANP 97
WA G + V+ +G DVN+ LHYAA G+ + + LL GA+
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
+ D+ TPL A V EGH
Sbjct: 67 NAPDKHHITPLLSA---VYEGHVS 87
Score = 53.2 bits (129), Expect = 2e-10
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 63 GADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G + +A G K + G + + E G+ PL A D G E
Sbjct: 1 GPLGSMC--DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA---ADCGQLE 54
Score = 25.1 bits (56), Expect = 4.3
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVE 57
S G + G T + +++
Sbjct: 94 SKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 98.0 bits (245), Expect = 4e-27
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS--SSLHYAACFGRPSV 86
+V+ +D+ G+T L + + G+ + V L E GAD++ + R ++LH AA + RP V
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ L+ GA+ ++ DE G T L+ ARE
Sbjct: 126 VEALVELGADIEVEDERGLTALELARE---ILKTT 157
Score = 74.8 bits (185), Expect = 3e-18
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 7/96 (7%)
Query: 27 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPS 85
+ + + G G ADV + + + AA
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQ 58
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
LL + D DE+G+T L G +
Sbjct: 59 ALSQLL-EDRDVDAVDENGRTALLFV---AGLGSDK 90
Score = 64.4 bits (158), Expect = 3e-14
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 28 SGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFG 82
G +++ D G T L+ A+ + E+VE L E GAD+ +G ++L A
Sbjct: 97 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL--TALELAREIL 154
Query: 83 RPSVAKVLLRHGANPDLRD 101
+ + ++ G L
Sbjct: 155 KTTPKGNPMQFGRRIGLEK 173
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 97.1 bits (243), Expect = 5e-27
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR 83
+ G VN D+ G T L WASAFG E V FL E GAD + +R S+L A+ G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ +LL + ++ D +G TPL A V H +
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYA---VRGNHVK 116
Score = 91.3 bits (228), Expect = 8e-25
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G + + + ++ L+ AS G ++V L ER D+N + L YA
Sbjct: 57 EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK 116
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LL GA+ + G TP+D A V G+R+
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLA---VALGYRK 149
Score = 84.4 bits (210), Expect = 5e-22
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
V++N D G T L +A + VE L RGAD+ + + A G
Sbjct: 90 ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149
Query: 86 VAKVLLRHGANPDLRDEDGKTP 107
V +V+ H + P
Sbjct: 150 VQQVIENHILKLFQSNLVPADP 171
Score = 76.3 bits (189), Expect = 6e-19
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGAD-VNKG--QRSSSLHYAACFGRPSVAKVLLRHGAN 96
++ +A G + ++ +G + VNK + + L +A+ FG + LL GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 97 PDLRDEDGKTPLDKARERVDEGHRE 121
P + ++ ++ L A G+ +
Sbjct: 62 PHILAKERESALSLA---STGGYTD 83
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 95.6 bits (239), Expect = 2e-26
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
+D+ ++N DD G + L+WA G +VE L RGA +N R + LH AA G
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LL++ A+ + +E G PL A G +
Sbjct: 85 RDIVQKLLQYKADINAVNEHGNVPLHYA---CFWGQDQ 119
Score = 94.0 bits (235), Expect = 9e-26
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G +N M+ T L+ A++ G +++V+ L + AD+N + LHYA +G+
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VA+ L+ +GA + ++ G+ P+DKA+
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKA---PLREL 152
Score = 78.6 bits (195), Expect = 8e-20
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKG--QRSSSLHYAACFGRPSVAKVLLRH 93
+ G V + D+N+G S LH+A GR +V ++L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 94 GANPDLRDEDGKTPLDKARERVDEGHRE 121
GA ++ + TPL A GHR+
Sbjct: 62 GARINVMNRGDDTPLHLA---ASHGHRD 86
Score = 69.0 bits (170), Expect = 5e-16
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
++N +++ G L++A +G ++ E L GA V+ G+ + A R
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE--MPVDKAKAPLREL 152
Query: 86 VAKVLLRHGANP---DLRDEDGKT 106
+ + + G N +D K
Sbjct: 153 LRERAEKMGQNLNRIPYKDTFWKG 176
Score = 42.4 bits (101), Expect = 5e-06
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRP 84
G V+ + G+ ++ A A + + E + G ++N+ G
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR----IPYKDTFWKGTT 178
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 98.3 bits (246), Expect = 2e-26
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
SG + G T L+ A+A G E+++ L + DVN + LH AA +G+
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERV 115
++L+ + + + ++ G+T D A E +
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDI 276
Score = 97.2 bits (243), Expect = 6e-26
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G ++N+ + G T L+ A +MV+FL E GA++N+ G LH AA G
Sbjct: 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW--IPLHAAASCGY 118
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A+ L+ GA+ + +G TPLD A +E E
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIA---EEEAMEE 153
Score = 76.0 bits (188), Expect = 7e-18
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGA 95
D + G++ +E + K + A G LL GA
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + + DG T L +A + + +
Sbjct: 65 DINYANVDGLTALHQA---CIDDNVD 87
Score = 67.9 bits (167), Expect = 5e-15
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNKGQRSSSLHYAACFGRPSV 86
S G V ++ G T L+ A +E+++ R G D+ ++
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE-----AARKEEERIMLRDA 181
Query: 87 AKVLLRHGANPDLRDEDGKTPL 108
+ L N + G T L
Sbjct: 182 RQWLNSGHINDVRHAKSGGTAL 203
Score = 62.1 bits (152), Expect = 6e-13
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
+VN D G T L+ A+ +G +E L E D+ GQ ++ A
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ--TAFDVADEDIL 277
Query: 84 PSVAKVLLRHGANPDLRDED 103
+ ++ + + E
Sbjct: 278 GYLEELQKKQNLLHSEKREK 297
Score = 34.8 bits (81), Expect = 0.003
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS 74
++ ++ VGQT + A + E ++ ++ + S
Sbjct: 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 96.9 bits (242), Expect = 3e-26
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRS--SSLHYAACFGRPSV 86
+V+ +D+ G+T L + + G+ + V L E GAD++ + R ++LH AA + RP V
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ L+ GA+ ++ DE G T L+ ARE
Sbjct: 127 VEALVELGADIEVEDERGLTALELARE---ILKTT 158
Score = 73.4 bits (181), Expect = 3e-17
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 7/86 (8%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGA 95
G G ADV + + + AA LL
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQALSQLL-EDR 68
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ D DE+G+T L G +
Sbjct: 69 DVDAVDENGRTALLFV---AGLGSDK 91
Score = 60.3 bits (147), Expect = 2e-12
Identities = 16/116 (13%), Positives = 27/116 (23%), Gaps = 29/116 (25%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-------------------- 67
G ++ D+ G T L A + G +
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDE 191
Query: 68 ----KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
+G+ + V H A +D + L+ A V E
Sbjct: 192 IVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV--AKDYEDGLEYA---VAESV 242
Score = 45.7 bits (109), Expect = 4e-07
Identities = 7/70 (10%), Positives = 15/70 (21%), Gaps = 3/70 (4%)
Query: 17 KDTDALIETIDSG---GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS 73
+ ++E E+ G+ + + A+
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED 232
Query: 74 SLHYAACFGR 83
L YA
Sbjct: 233 GLEYAVAESV 242
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 94.4 bits (236), Expect = 4e-26
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGR 83
+ V + ++ G+T L FG+ + L ++GA N +S +H AA G
Sbjct: 22 LHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
KVL+ HGA+ ++ D G P+ A V EGH
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALPIHLA---VQEGHTA 115
Score = 84.8 bits (211), Expect = 2e-22
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVA 87
G N D G + ++ A+ G + ++ L E GADVN + +H A G +V
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 88 KVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L ++ RD G TPL+ A + G ++
Sbjct: 118 SFLA-AESDLHRRDARGLTPLELA---LQRGAQD 147
Score = 72.1 bits (178), Expect = 2e-17
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 40 GQTLLNWASAFG-TQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGAN 96
L+ A+A G QE+ L + R ++L FG ++A LL+ GA+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60
Query: 97 PDLRDEDGKTPLDKARERVDEGHRE 121
P+++D G +P+ A G +
Sbjct: 61 PNVQDTSGTSPVHDA---ARTGFLD 82
Score = 58.2 bits (142), Expect = 5e-12
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G +VN D G ++ A G +V FL +D+++ + + L A G
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQD 147
Query: 86 VAKVLLRH 93
+ +L H
Sbjct: 148 LVDILQGH 155
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 94.4 bits (236), Expect = 5e-26
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G +V+ D G L+ A ++G E+ E L + GA VN + + LH AA G+
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K+LL+HGA+P ++ DG TPLD + +G +
Sbjct: 123 ICKLLLQHGADPTKKNRDGNTPLDLVK----DGDTD 154
Score = 91.3 bits (228), Expect = 8e-25
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
V ++ T L++A+ + +VE+L + GADV+ G LH A +
Sbjct: 28 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGL--VPLHNACSY 85
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G VA++L++HGA ++ D TPL +A +G E
Sbjct: 86 GHYEVAELLVKHGAVVNVADLWKFTPLHEA---AAKGKYE 122
Score = 81.7 bits (203), Expect = 5e-21
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 40 GQTLLNWASAFGTQEMVEFLCER-GADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGAN 96
L A+ G E V+ LC + G++S+ LH+AA + R SV + LL+HGA+
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 97 PDLRDEDGKTPLDKARERVDEGHRE 121
+D+ G PL A GH E
Sbjct: 68 VHAKDKGGLVPLHNA---CSYGHYE 89
Score = 60.1 bits (147), Expect = 9e-13
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G VN D T L+ A+A G E+ + L + GAD K G + L G
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN--TPLDLVKD-GD 152
Query: 84 PSVAKVLLRHGA 95
+ +L A
Sbjct: 153 TDIQDLLRGDAA 164
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 94.0 bits (235), Expect = 6e-26
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
+N D+ G T L WA+A G +VEFL + GAD R S+L A G
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K+LL G + + D +G TPL A V H +
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLYA---VHGNHVK 116
Score = 92.5 bits (231), Expect = 3e-25
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G + + ++ L+ A + G ++V+ L + G DVN+ G + L YA
Sbjct: 57 QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG--TPLLYAVHGNH 114
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
K+LL GA+P + + G +D A V G+R
Sbjct: 115 VKCVKMLLESGADPTIETDSGYNSMDLA---VALGYRS 149
Score = 81.3 bits (202), Expect = 6e-21
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
++ +A G + E+ +N + + L +AA G+ +V + LL++GA+P
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
L + ++ L A +G+ +
Sbjct: 63 QLLGKGRESALSLA---CSKGYTD 83
Score = 74.3 bits (184), Expect = 4e-18
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
GV+VN D G T L +A + V+ L E GAD +S+ A G S
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149
Query: 86 VAKVLLRHGANPDLRDED 103
V +V+ H ++
Sbjct: 150 VQQVIESHLLKLLQNIKE 167
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 96.8 bits (242), Expect = 7e-26
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS 73
I + + L + + D G + +A A +V L GA N +
Sbjct: 7 INTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF 64
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
LH AA + K+LL G + D+ G T L A VD G+ +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA---VDSGNMQ 109
Score = 86.0 bits (214), Expect = 1e-21
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
+ G N ++ + L+ A+ ++V+ L G D ++ ++L+YA G
Sbjct: 52 NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109
Query: 86 VAKVLLRHGANPDLRDEDG-KTPLDKARERVDEGHRE 121
K+ ++ + G KT A V
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHA---VMLNDVS 143
Score = 81.4 bits (202), Expect = 5e-20
Identities = 9/84 (10%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 30 GVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAK 88
N + + + A EM++ L + ++ S+ +AK
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-----SANLENVLLDDAEIAK 238
Query: 89 VLLRHGANPDLRDEDGKTPLDKAR 112
+++ + K
Sbjct: 239 MIIEKHVEYKSDSYTKDLDIVKNN 262
Score = 80.3 bits (199), Expect = 1e-19
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVG-QTLLNWASAFGTQEMVEFLCERGADVNKG-QRSSSLHYAACFGRPS 85
+ F G +T A +V + S +H G
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD 175
Query: 86 VAKVLLRHGANPDLRDEDGKTP-LDKARERVDEGHRE 121
+ +LL + + + + P + A +D E
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLA---IDNKDIE 209
Score = 36.7 bits (86), Expect = 7e-04
Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 5/47 (10%)
Query: 75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L + S + D G + A + + +
Sbjct: 4 LSRINTWK--SKQLKSFLSSKDTFKADVHGHSASYYA---IADNNVR 45
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 95.6 bits (239), Expect = 1e-25
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGR 83
+ +VN +DD+G++ L+WA+A + L + GA+ + + + + L AA G
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE--TPLFLAAREGS 202
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
AKVLL H AN D+ D + P D A+ER H +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQER---MHHD 237
Score = 94.1 bits (235), Expect = 4e-25
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGR 83
I + +++ G T L A+ + M+E L ADVN S+LH+AA
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
A VLL++GAN D+++ +TPL A EG E
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLA---AREGSYE 204
Score = 82.1 bits (204), Expect = 2e-20
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK----GQRSSSLHYAACFG 82
+ N D++G+T L+ A + Q + + L A D++ G + L AA
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLA 135
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + L+ A+ + D+ GK+ L A + +
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWA---AAVNNVD 171
Score = 79.0 bits (196), Expect = 3e-19
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 23/109 (21%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQ-------------EMVEFLCERGADV-----NKGQRS 72
++VN G T L AS G ++ +GA + G+
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-- 58
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++LH AA + R AK LL A+ +++D G+TPL A V +
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA---VSADAQG 104
Score = 66.3 bits (163), Expect = 2e-14
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
G + ++ +T L A+ G+ E + L + A+ + A
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237
Query: 86 VAKVLLRHGANP 97
+ ++L +
Sbjct: 238 IVRLLDLEHHHH 249
Score = 39.0 bits (92), Expect = 9e-05
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
+ D + + + A ++V L +
Sbjct: 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 98.3 bits (246), Expect = 1e-25
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
GV V+ +G T L+ AS +G ++V+FL + ADVN S LH AA G
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ +LL++GA+P+ DG TPL A+ G+
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKR---LGYIS 391
Score = 96.4 bits (241), Expect = 6e-25
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVA 87
G N G T L+ A+ G EMV L + A+ N G +S + LH A G VA
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 88 KVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VL++HG D G TPL A G+ +
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVA---SHYGNIK 325
Score = 96.4 bits (241), Expect = 6e-25
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS 85
S G+ + G T L+ AS G +V+ L +RGA N + + LH AA G
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VAK LL++ A + + +D +TPL A GH
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCA---ARIGHTN 94
Score = 94.9 bits (237), Expect = 2e-24
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
N G T L+ A+ G E V L E+ A + + LH AA +G+
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VA++LL A+P+ ++G TPL A V + +
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVA---VHHNNLD 193
Score = 94.1 bits (235), Expect = 4e-24
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
N G T L+ A ++V+ L RG + + + LH AA +
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VA+ LL++G + + G TPL A EGH E
Sbjct: 227 VARSLLQYGGSANAESVQGVTPLHLA---AQEGHAE 259
Score = 92.9 bits (232), Expect = 9e-24
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
G N + +T L+ A+ G E+ ++L + A VN + + LH AA G +
Sbjct: 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K+LL + ANP+L G TPL A EGH E
Sbjct: 95 MVKLLLENNANPNLATTAGHTPLHIA---AREGHVE 127
Score = 78.7 bits (195), Expect = 1e-18
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
+VN +G + L+ A+ G ++V L + GA N+ ++ L A G S
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
Query: 86 VAKVLLR---HGANPDLRDEDGKTPLDKARERVDEG 118
V VL + + D+ + + E +D
Sbjct: 392 VTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVS 427
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 93.2 bits (233), Expect = 2e-25
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G +VN +D G T L A+ FG E+VE L + GADVN + + LH AA FG
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ +VLL++GA+ + +D+ GKT D + +D G+ +
Sbjct: 128 IVEVLLKNGADVNAQDKFGKTAFDIS---IDNGNED 160
Score = 89.7 bits (224), Expect = 4e-24
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
+ G +VN D G T L+ A+ G E+VE L + GADVN + L AA FG
Sbjct: 35 ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ +VLL++GA+ + D +G TPL A GH E
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLA---AMFGHLE 127
Score = 83.2 bits (207), Expect = 1e-21
Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 30 GVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSV 86
G + L A+ G + V L GADVN + LH AA G +
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+VLL++GA+ + D G TPL A GH E
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLA---ALFGHLE 94
Score = 61.6 bits (151), Expect = 3e-13
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G +VN D G T L+ A+ FG E+VE L + GADVN G+ ++ + G
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK--TAFDISIDNGN 158
Query: 84 PSVAKVLLRH 93
+A++L +
Sbjct: 159 EDLAEILQKL 168
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 92.1 bits (230), Expect = 2e-25
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSLHYAACFGRP 84
G + N ++ G+ + G+ ++ E L GA+ N + +H AA G
Sbjct: 33 EAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VL R GA D+ D G+ P+D A ++GHR+
Sbjct: 92 DTLVVLHRAGARLDVCDAWGRLPVDLA---EEQGHRD 125
Score = 85.2 bits (212), Expect = 8e-23
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 29 GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSV 86
G ++ + L A+A G E V L E GAD N R + G V
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQV 59
Query: 87 AKVLLRHGANPDLRDEDGKT-PLDKARERVDEGHRE 121
A++LL HGA P+ D T P+ A EG +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDA---AREGFLD 92
Score = 64.0 bits (157), Expect = 2e-14
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 30 GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPSV 86
G E N D T ++ A+ G + + L GA ++ + A G +
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 87 AKVLLRHGAN 96
A+ L +
Sbjct: 127 ARYLHAATGD 136
Score = 40.5 bits (96), Expect = 2e-05
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 65
G ++ D G+ ++ A G +++ +L D
Sbjct: 99 RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 92.5 bits (231), Expect = 2e-25
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRP 84
G N + G+ + G+ + E L GA+ N + +H AA G
Sbjct: 33 EAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL 91
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VL R GA D+RD G+ P+D A + GHR+
Sbjct: 92 DTLVVLHRAGARLDVRDAWGRLPVDLA---EELGHRD 125
Score = 76.7 bits (190), Expect = 3e-19
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHG 94
+ L A+A G E V L E GA+ N + G VA++LL HG
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67
Query: 95 ANPDLRDEDGKT-PLDKARERVDEGHRE 121
A P+ D T P+ A EG +
Sbjct: 68 AEPNCADPATLTRPVHDA---AREGFLD 92
Score = 72.1 bits (178), Expect = 2e-17
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 30 GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNKGQRSSS--LHYAACFGRPSV 86
G E N D T ++ A+ G + + L GA ++ + A G V
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVD 116
A+ L + + + D
Sbjct: 127 ARYLRAAAGGTRGSNHARIDAAEGPSDIPD 156
Score = 60.2 bits (147), Expect = 6e-13
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 61 ERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR 120
E A + + L AA GR + LL GANP+ + G+ P+ G
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM----MGSA 57
Query: 121 E 121
Sbjct: 58 R 58
Score = 51.3 bits (124), Expect = 2e-09
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVA 87
G ++ D G+ ++ A G +++ +L S+ A G +
Sbjct: 99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG---SNHARIDAAEGPSDIP 155
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 92.4 bits (231), Expect = 2e-25
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
GV + V +T L+ A++ G +VE L + GADVN + ++LH+A
Sbjct: 55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V ++L+++GA+ + + KT D + +D G+ +
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDIS---IDNGNED 147
Score = 89.0 bits (222), Expect = 4e-24
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNK---GQRSSSLHYAACFGRPSVAKVLLRHGAN 96
L A+ G + V L GA G S LH AA +G S +VLLR G +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGT--SPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 97 PDLRDEDGKTPLDKARERVDEGHRE 121
D R + +TPL A EGH
Sbjct: 60 RDARTKVDRTPLHMA---ASEGHAN 81
Score = 86.3 bits (215), Expect = 6e-23
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
+ G D +G + L+ A+ +G E L G + + + LH AA G
Sbjct: 23 ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGH 79
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++ +VLL+HGA+ + +D T L A + H+E
Sbjct: 80 ANIVEVLLKHGADVNAKDMLKMTALHWA---TEHNHQE 114
Score = 57.8 bits (141), Expect = 6e-12
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G +VN D + T L+WA+ QE+VE L + GADV+ + ++ + G
Sbjct: 88 KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK--TAFDISIDNGN 145
Query: 84 PSVAKVL 90
+A++L
Sbjct: 146 EDLAEIL 152
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 95.2 bits (238), Expect = 2e-25
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ-RSSSLHYAACFGRPSV 86
+ G ++ T L A + V+ L E GADVN+G+ + S LH A +
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEEL 181
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
A +L+ GA+ ++ +GK P++ E
Sbjct: 182 ACLLMDFGADTQAKNAEGKRPVELV---PPESP 211
Score = 89.8 bits (224), Expect = 2e-23
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAK 88
G +VN + T L A G+ + V L + GA V + +S +H AA G
Sbjct: 59 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 118
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L+ +G N D + TPL A + R
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLA---CENQQRA 148
Score = 86.3 bits (215), Expect = 4e-22
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
S G VN + + L+ A G V+ L + GA VN + L A G
Sbjct: 24 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+LL+HGA+ + D +P+ +A GH E
Sbjct: 84 CVNLLLQHGASVQ-PESDLASPIHEA---ARRGHVE 115
Score = 85.2 bits (212), Expect = 1e-21
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
+ ++ A+ G Q + L +G VN S LH A G S K+LL+HGA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
+ D TPL A G +
Sbjct: 63 NGVTADWHTPLFNA---CVSGSWD 83
Score = 83.3 bits (207), Expect = 8e-21
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G +VN + L+ + ++E+ L + GAD G+R +
Sbjct: 155 ESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP--VELVPPES- 210
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A++ L P L + H +
Sbjct: 211 -PLAQLFLEREGPPSLMQLCRLRIRKCF---GIQQHHK 244
Score = 60.5 bits (148), Expect = 2e-12
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 4/69 (5%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ--RSSSLHYAACFGRPSVA 87
G + + G+ + + + ER + Q R +
Sbjct: 189 GADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKIT 246
Query: 88 KVLLRHGAN 96
K++L
Sbjct: 247 KLVLPEDLK 255
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 94.4 bits (236), Expect = 2e-25
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVN---KGQRSSSLHYAACFGR 83
+ G +V+ MD G T L WA+ + + L VN K ++++LH+A G
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+V +LL GAN D ++ G++ LD A +
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLA---KQRKNVW 224
Score = 92.9 bits (232), Expect = 1e-24
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR---SSSLHYAACFGRP 84
G +V D TLL+WA+ ++V++ +GA V++ S+ LH+A G
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
S+ L+++GA+P L D +G + + A GH
Sbjct: 90 SMVVQLMKYGADPSLIDGEGCSCIHLA---AQFGHTS 123
Score = 90.6 bits (226), Expect = 7e-24
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP 84
S G V+ + D+ T L+WA+ G MV L + GAD + G+ S +H AA FG
Sbjct: 63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT 122
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR 120
S+ L+ G + D+ D++G TPL A H
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWA---AYRTHS 155
Score = 84.0 bits (209), Expect = 3e-21
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVL 90
+ +DD + A+ +G E L E G DV + + + LH+AA R + K
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 91 LRHGANPDLRDED-GKTPLDKARERVDEGHRE 121
+ GA D D TPL A +GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWA---TRQGHLS 90
Score = 64.0 bits (157), Expect = 1e-13
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 28 SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFG 82
+ V VN D T L+WA G ++ L E GA+V+ G+ S+L A
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE--SALDLAKQRK 221
Query: 83 RPSVAKVLLRHGANPD 98
+ L
Sbjct: 222 NVWMINHLQEARQAKG 237
Score = 40.5 bits (96), Expect = 3e-05
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
G V+ + G++ L+ A M+ L E
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 26.6 bits (60), Expect = 2.0
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 3/26 (11%)
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ D+ + KA G E
Sbjct: 1 HMTHIDDYSTWDIVKA---TQYGIYE 23
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 95.3 bits (238), Expect = 3e-25
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ-RSSSLHYAACFGRPSV 86
+ G ++ T L A + V+ L E GADVN+G+ + S LH +
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEEL 237
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
A +L+ GA+ ++ +GK P++ E
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVELV---PPESP 267
Score = 88.3 bits (220), Expect = 1e-22
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAK 88
G +VN + T L A G+ + V L + GA V + +S +H AA G
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 174
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L+ +G N D + TPL A + R
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLA---CENQQRA 204
Score = 86.8 bits (216), Expect = 4e-22
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
S + + + + ++ A+ G Q + L +G VN S LH A G S
Sbjct: 49 SNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS 106
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
K+LL+HGA + D TPL A G +
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNA---CVSGSWD 139
Score = 66.0 bits (162), Expect = 2e-14
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR-SSSLHYAACFGRPSV 86
G + MD Q ++ + G ++ + S +H AA G
Sbjct: 16 PRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLS 74
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ L+ G ++ D +PL +A GH
Sbjct: 75 LRNLISQGWAVNIITADHVSPLHEA---CLGGHLS 106
Score = 58.7 bits (143), Expect = 1e-11
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G +VN + L+ ++E+ L + GAD G+R +
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP--VELVPPES- 266
Query: 84 PSVAKVLLRHGANPD 98
P L R GA+
Sbjct: 267 PLAQLFLEREGASLP 281
Score = 48.3 bits (116), Expect = 5e-08
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 47 ASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLL-RHGANPDLRDEDG 104
S+ L RG+ + + + + G + L + D
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSD 59
Query: 105 KTPLDKARERVDEGHRE 121
+P+ +A GH+
Sbjct: 60 WSPMHEA---AIHGHQL 73
Score = 34.4 bits (80), Expect = 0.004
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
G + + G+ + FL GA + K
Sbjct: 243 DFGADTQAKNAEGKRPVELVPPES-PLAQLFLEREGASLPK 282
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 91.3 bits (228), Expect = 3e-25
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
+ G +VN D+ G T L A+A G E+VE L + GADVN G + LH AA G
Sbjct: 35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF--TPLHLAAFIGH 92
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A+VLL+HGA+ + +D+ GKT D + + G+ +
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTAFDIS---IGNGNED 127
Score = 79.4 bits (197), Expect = 2e-20
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLLRHGA 95
L A+ G + V L GADVN G + L+ A G + +VLL++GA
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGA 71
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+ + D G TPL A GH E
Sbjct: 72 DVNAVDAIGFTPLHLA---AFIGHLE 94
Score = 62.4 bits (153), Expect = 7e-14
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 57 EFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
G+D+ K L AA G+ ++L+ +GA+ + +DE G TPL A
Sbjct: 5 HHHHHHGSDLGK-----KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA---TA 56
Query: 117 EGHRE 121
GH E
Sbjct: 57 HGHLE 61
Score = 60.5 bits (148), Expect = 4e-13
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G +VN +D +G T L+ A+ G E+ E L + GADVN G+ ++ + G
Sbjct: 68 KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK--TAFDISIGNGN 125
Query: 84 PSVAKVLLRH 93
+A++L +
Sbjct: 126 EDLAEILQKL 135
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 93.6 bits (234), Expect = 4e-25
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGR 83
+ +VN +DD+G++ L+WA+A + L + GA+ + + + + L AA G
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE--TPLFLAAREGS 170
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
AKVLL H AN D+ D + P D A + H +
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIA---QERMHHD 205
Score = 91.7 bits (229), Expect = 2e-24
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
I + +++ G T L A+ + M+E L ADVN G+ S+LH+AA
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK--SALHWAAAV 135
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
A VLL++GAN D+++ +TPL A EG E
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLA---AREGSYE 172
Score = 82.5 bits (205), Expect = 7e-21
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK----GQRSSSLHYAACFG 82
+ N D++G+T L+ A + Q + + L A D++ G + L AA
Sbjct: 46 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLA 103
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + L+ A+ + D+ GK+ L A + +
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWA---AAVNNVD 139
Score = 81.7 bits (203), Expect = 2e-20
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 28 SGGVEV-NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFG 82
G + N D G+T L+ A+ + + + L E AD N G+ + LH A
Sbjct: 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR--TPLHAAVSAD 69
Query: 83 RPSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
V ++L+R+ A + D R DG TPL A
Sbjct: 70 AQGVFQILIRNRATDLDARMHDGTTPLILA---ARLAVEG 106
Score = 69.7 bits (172), Expect = 6e-16
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 51 GTQEMVEFLCERGADV-----NKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
++ +GA + G+ ++LH AA + R AK LL A+ +++D G+
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGE--TALHLAARYSRSDAAKRLLEASADANIQDNMGR 59
Query: 106 TPLDKARERVDEGHRE 121
TPL A V +
Sbjct: 60 TPLHAA---VSADAQG 72
Score = 69.0 bits (170), Expect = 9e-16
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
G + ++ +T L A+ G+ E + L + A+ + A
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 205
Query: 86 VAKVLLRHGA--NPDL 99
+ ++L + +P L
Sbjct: 206 IVRLLDEYNLVRSPQL 221
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 92.5 bits (231), Expect = 5e-25
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
G VN D G+T L W+ FG EM FL E GA+VN G+ + L A+ +GR
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE--TPLIVASKYGRSE 148
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K LL GA+ RD G T A G +E
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASA---RIFGRQE 181
Score = 89.8 bits (224), Expect = 6e-24
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 28 SGGVEV--NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR 83
+ ++ N+ D +T L A G + ++ L E + + S++L +A R
Sbjct: 21 NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNR 80
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A+ LL G+N + +D GKTPL + + G+ E
Sbjct: 81 LGIAEKLLSKGSNVNTKDFSGKTPLMWS---IIFGYSE 115
Score = 67.8 bits (167), Expect = 2e-15
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 34 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRH 93
+ MD G+ + + ++FL + + + L A G + L+ +
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRN--YRDSYNR--TPLMVACMLGMENAIDKLVEN 57
Query: 94 GANPDLRDEDGKTPLDKARERVDEGHRE 121
+ +D +G T L A V
Sbjct: 58 FDKLEDKDIEGSTALIWA---VKNNRLG 82
Score = 61.6 bits (151), Expect = 4e-13
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSSLHYAACFGR 83
G VN + G+T L AS +G E+V+ L E GAD++ G ++ A FGR
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL--TAEASARIFGR 179
Query: 84 PSVAKVLLRHGA 95
V K+
Sbjct: 180 QEVIKIFTEVRR 191
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 93.2 bits (233), Expect = 7e-25
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
S G ++N D+ L+WA+ G ++ E L D++ S LH AA R
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ L ++ L++++G+TPL A
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQCA---SLNSQVW 224
Score = 92.5 bits (231), Expect = 1e-24
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGR 83
+ +G ++VN DD G T + WA+ + ++V+ L +G+D+N + + LH+AA G
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A++LL + + G +PL A E +
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIA---ARENRYD 191
Score = 88.2 bits (220), Expect = 6e-23
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 31 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAK 88
+ ++ L+ A+ G ++ L + GA+++ + + L AA K
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 89 VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L++ GA D +D +G T L A +GH E
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLA---AKKGHYE 91
Score = 86.3 bits (215), Expect = 4e-22
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKG--QRSSSLHYAACFGRP 84
G V+ D G T L+ A+ G E+V++L G DVN + + +A +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K+LL G++ ++RD + L A G +
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWA---AFSGCVD 158
Score = 84.4 bits (210), Expect = 2e-21
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
G ++ + +T L A+ E V++L + GA V+ S+ LH AA G
Sbjct: 32 QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE 91
Query: 86 VAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
V + LL +G + + +D+ G TP+ A + H +
Sbjct: 92 VVQYLLSNGQMDVNCQDDGGWTPMIWA---TEYKHVD 125
Score = 65.9 bits (162), Expect = 2e-14
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
+ +++ ++ G + L+ A+ + V R +DV + + L A+ +
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Query: 86 VAKVLLRHGAN 96
A + + +
Sbjct: 225 SALQMSKALQD 235
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 90.1 bits (225), Expect = 9e-25
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G +VN D G+T L+ A+ G E+V+ L E GADVN G+ + LH AA G
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGH 80
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V K+LL GA+ + +D++G+TPL A GH E
Sbjct: 81 LEVVKLLLEAGADVNAKDKNGRTPLHLA---ARNGHLE 115
Score = 83.9 bits (209), Expect = 2e-22
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
G+T L+ A+ G E+V+ L E GADVN + LH AA G V K+LL GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
+ +D++G+TPL A GH E
Sbjct: 62 NAKDKNGRTPLHLA---ARNGHLE 82
Score = 67.4 bits (166), Expect = 6e-16
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
G +VN D G+T L+ A+ G E+V+ L E GADVN + + LH AA G
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Query: 86 VAKVLLRHGA 95
V K+LL GA
Sbjct: 116 VVKLLLEAGA 125
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 94.9 bits (237), Expect = 1e-24
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G +V+ D G L+ A ++G E+ E L + GA VN + + LH AA R
Sbjct: 79 QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVE 138
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V +LL HGA+P L + GK+ +D A RE
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMA---PTPELRE 171
Score = 94.9 bits (237), Expect = 1e-24
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 10 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 69
L+E RS + + L+ + V + D T L+ A+ + +V+ L + GADV+
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 70 --QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
LH A +G V ++LL+HGA + D TPL +A + E
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVE 138
Score = 93.7 bits (234), Expect = 3e-24
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
G VN + T L+ A+ +++E L + GA +N GQ ++LH AA G
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ--TALHRAALAGHLQ 294
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERV 115
++LL +G++P + G T E V
Sbjct: 295 TCRLLLSYGSDPSIISLQGFTAAQMGNEAV 324
Score = 89.1 bits (222), Expect = 1e-22
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRP 84
+ + + LL A + ++++ L + + G++S+ LH AA + R
Sbjct: 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRV 71
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ ++LL+HGA+ +D+ G PL A GH E
Sbjct: 72 RIVQLLLQHGADVHAKDKGGLVPLHNA---CSYGHYE 105
Score = 72.5 bits (179), Expect = 2e-16
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 14 IRSKDTD---ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ 70
+ A+ E + G +LL A ++ + L + + Q
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209
Query: 71 -RSSSLHYAACFGRPS---VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++LH A P VA++LLR GAN + +++D TPL A + H +
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA---AERAHND 261
Score = 68.3 bits (168), Expect = 5e-15
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
G ++N +D +GQT L+ A+ G + L G+D + Q ++
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----E 322
Query: 86 VAKVLLRHGANPDLRDEDGKT 106
+ +L D D +
Sbjct: 323 AVQQILSESTPMRTSDVDYRL 343
Score = 59.8 bits (146), Expect = 5e-12
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKV 89
G + ++ G++ ++ A +E + + + + L AA + K
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS----------LLQAAREADLAKVKK 196
Query: 90 LLRHGANPDLRDEDGKTPL 108
L + + +T L
Sbjct: 197 TLALEIINFKQPQSHETAL 215
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGKTPL 108
FG+ A L A L E K L
Sbjct: 3 FGK--SALDLADPSAKAVLTGEYKKDEL 28
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 92.3 bits (230), Expect = 1e-24
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNKG--QRSSSLHYAACFGRP 84
V VN +D G T L WA G +++VE L + ++N+ ++LH AA G
Sbjct: 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYA 153
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ ++LL GA DLR+ + K D A +
Sbjct: 154 DIVQLLLAKGARTDLRNIEKKLAFDMA---TNAACAS 187
Score = 81.1 bits (201), Expect = 2e-20
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
+E+N + +G T L+ A+ G ++V+ L +GA + + + A
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK--LAFDMATNA 183
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGH 119
S+ K A L + + + + E H
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDS---DLEHH 218
Score = 75.7 bits (187), Expect = 3e-18
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKV 89
++ ++ D+ T ++ G ++ + + LH AA G S +
Sbjct: 35 EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI---DNPLHEAAKRGNLSWLRE 91
Query: 90 LLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L + + D+ G T L A GH++
Sbjct: 92 CLDNRVGVNGLDKAGSTALYWA---CHGGHKD 120
Score = 58.4 bits (142), Expect = 8e-12
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 10/84 (11%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKVLLRHGANP 97
GQ + A + L D+ ++ GR L
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYV 66
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
+ E PL +A G+
Sbjct: 67 AEQAESIDNPLHEA---AKRGNLS 87
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 93.8 bits (234), Expect = 1e-24
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRP 84
G ++N + G+T L+ A ++E L + GAD + L A P
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A++L HGA D +P + + +
Sbjct: 239 ILARLLRAHGAPEPEDGGDKLSPCSSS---GSDSDSD 272
Score = 91.5 bits (228), Expect = 7e-24
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 23 IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSS---SLHYAA 79
+ +++ + G T L+ A EMV L + GAD+NK + + LH A
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
Query: 80 CFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
SV ++LL+ GA+P R G+TPL A + +
Sbjct: 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSA---LLRPNPI 239
Score = 84.9 bits (211), Expect = 2e-21
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV-------NKGQRSSSLHYAACFGRPS 85
++ + G T L+ A + ++FL A + GQ ++LH AA G S
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ--TALHLAAILGEAS 59
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ L GA + + G T L A
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLA---CRVRAHT 92
Score = 73.7 bits (182), Expect = 3e-17
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 32 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPSVAKV 89
++ +D+GQT L+ A+ G VE L GA V +R ++LH A + A V
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96
Query: 90 LLRHGANPDLRDEDGKTPLDKA 111
LL+ + D +
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQD 118
Score = 70.7 bits (174), Expect = 4e-16
Identities = 15/108 (13%), Positives = 24/108 (22%), Gaps = 19/108 (17%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG----------------QRSS 73
G V + G T L+ A L + + +
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + + + DG TPL A V E
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA---VIHKDAE 172
Score = 27.9 bits (63), Expect = 0.76
Identities = 2/36 (5%), Positives = 9/36 (25%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 63
+ G + + + + + + E
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 92.5 bits (231), Expect = 1e-24
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
L+ GG E++ +++ QT L+ A +V L GA R ++ H A
Sbjct: 28 LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC 87
Query: 80 CFGRPSVAKVLLRHGA----NPDLRDEDGKTPLDKARERVDEGHRE 121
P+ + LL A + + R+ DG T L A V+ +E
Sbjct: 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA---VNTECQE 130
Score = 88.3 bits (220), Expect = 5e-23
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRP 84
G +++ +D G++ L A + MV+ L + GA+VN S S+LH A+ G
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL 196
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + L+R GA+ L++ TPL AR R +
Sbjct: 197 PLVRTLVRSGADSSLKNCHNDTPLMVARSR---RVID 230
Score = 87.5 bits (218), Expect = 1e-22
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG---QRSSSLHYA 78
L+++ G +++ + G T L+ A QE V+ L ERGAD++ S L +A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 79 ACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
S+ ++LL+HGAN + + G + L A G
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSA---SGRGLLP 197
Score = 84.0 bits (209), Expect = 3e-21
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCER----GADVNKG--QRSSSLHYAACFGRPSV 86
D+ G T L+ A G V L G +++ R + LH A PSV
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++L+ GA+P D G+T A +
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLA---CEHRSPT 93
Score = 70.6 bits (174), Expect = 3e-16
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPS 85
G VN G + L+ AS G +V L GAD + + L A
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND--TPLMVARSRRVID 230
Query: 86 VAKVLLRHGAN 96
+ + A+
Sbjct: 231 ILRGKATRPAS 241
Score = 36.7 bits (86), Expect = 7e-04
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
G + + + T L A + +++ R A
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 89.4 bits (223), Expect = 1e-24
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
S G +VN G T L+ A+ G E+V+ L +GADVN + ++ H A G
Sbjct: 30 SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE 89
Query: 86 VAKVLLRHGANPDLRDEDGKTPL 108
+ K+L GA+ + R
Sbjct: 90 IVKLLDAKGADVNARSWGSSHHH 112
Score = 82.4 bits (205), Expect = 7e-22
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHG 94
G T L+ A+ G E V+ L +GADVN ++ LH AA G + K+LL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 95 ANPDLRDEDGKTPLDKARERVDEGHRE 121
A+ + R +DG TP A GH E
Sbjct: 66 ADVNARSKDGNTPEHLA---KKNGHHE 89
Score = 57.4 bits (140), Expect = 4e-12
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 63 GADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G ++ LH AA G K LL GA+ + R +DG TPL A GH E
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA---AKNGHAE 56
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 90.1 bits (225), Expect = 2e-24
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPS 85
V VN + G+T L G E+ L RGA+ + + +H AA G
Sbjct: 26 QNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD 84
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ LL A+ ++ D +G PL A EGH
Sbjct: 85 TLQTLLEFQADVNIEDNEGNLPLHLA---AKEGHLR 117
Score = 87.8 bits (219), Expect = 2e-23
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G + D G +++ A+ G + ++ L E ADVN G LH AA G
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN--LPLHLAAKEGH 115
Query: 84 PSVAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
V + L++H A N R+ G T D A G E
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLA---RLYGRNE 151
Score = 83.2 bits (207), Expect = 1e-21
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 36 MDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLL 91
M + L A+A G E + L + +VN G+ ++L G P +A+ LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR--TALQVMK-LGNPEIARRLL 57
Query: 92 RHGANPDLRDEDGKTPLDKARERVDEGHRE 121
GANPDL+D G + A G +
Sbjct: 58 LRGANPDLKDRTGFAVIHDA---ARAGFLD 84
Score = 63.2 bits (155), Expect = 6e-14
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNKGQR--SSSLHYAACFGRP 84
+VN D+ G L+ A+ G +VEFL + A +V ++ A +GR
Sbjct: 91 EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 85 SVAKVLLRHGA 95
V ++ +GA
Sbjct: 151 EVVSLMQANGA 161
Score = 38.5 bits (91), Expect = 9e-05
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 64
+ V + G T + A +G E+V + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 91.5 bits (228), Expect = 4e-24
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
+ G+ V F + + LL +S G ++V+ + D + ++LH A C G
Sbjct: 26 AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE 84
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K L++ G N + D DG TPL A + +
Sbjct: 85 IVKFLVQFGVNVNAADSDGWTPLHCA---ASCNNVQ 117
Score = 85.4 bits (212), Expect = 8e-22
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK-----GQRSSSLHYAACFG 82
GV VN D G T L+ A++ ++ +FL E GA V Q ++ G
Sbjct: 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 150
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPL-DKARERVDE 117
++ L + ++ L D + DE
Sbjct: 151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186
Score = 83.4 bits (207), Expect = 5e-21
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGA 95
+ GQ L ++ G V + L ++ G + + ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 96 NPDLRDEDGKTPLDKARERVDEGHRE 121
+P L +++G T L A V GH E
Sbjct: 62 DPSLPNDEGITALHNA---VCAGHTE 84
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 87.5 bits (218), Expect = 6e-23
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 37 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHG 94
LL A+ T+++ E L + V++ + ++ L+ A +AK L+ G
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 95 ANPDLRDEDGKTPLDKARERVDEGHRE 121
A+ +L++ +P A +G E
Sbjct: 63 ADINLQNSISDSPYLYA---GAQGRTE 86
Score = 87.1 bits (217), Expect = 8e-23
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAACFGRPS 85
+V+ +D G T LN A E+ + L +RGAD+N S YA GR
Sbjct: 27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86
Query: 86 VAKVLLRHGA-NPDLRDEDGKTPLDKARERVDEGHRE 121
+ +L+H + + + G L A ++GH +
Sbjct: 87 ILAYMLKHATPDLNKHNRYGGNALIPA---AEKGHID 120
Score = 86.7 bits (216), Expect = 9e-23
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNK----GQRSSSLHYAAC 80
+ ++N + G L A+ G + V+ L E G D++ G ++L A
Sbjct: 92 LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY--TALIEAVG 149
Query: 81 FGRPS-----VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + K+L+ +GA+ ++D G+T +D A ++ G+ E
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK---GYTE 192
Score = 61.3 bits (150), Expect = 5e-13
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAF-----GTQEMVEFLCERGADVNKGQRS--SSLHYA 78
++ G +++F +D G T L A Q++V+ L E GAD + S +++ YA
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Query: 79 ACFGRPSVAKVLLRH 93
G ++K+L ++
Sbjct: 186 NQKGYTEISKILAQY 200
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 88.7 bits (221), Expect = 9e-23
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 28 SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRP 84
GG VNF + + G T L+ A +++VE L GAD ++ AA G
Sbjct: 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV 85
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ K+ L GA+ + D G T +A G +
Sbjct: 86 KLLKLFLSKGADVNECDFYGFTAFMEA---AVYGKVK 119
Score = 86.4 bits (215), Expect = 6e-22
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFG----TQEMVEFLCERGADVNKG--QRSSSLHYAA 79
+D G +VN D++G+ L A + + L + GADVN + + L A
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Query: 80 CFGRPSVAKVLL-RHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + LL + + D DGKT L A V+ ++
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA---VELKLKK 267
Score = 86.0 bits (214), Expect = 9e-22
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRPSVAKVLLRHGAN 96
LL A ++V+ L E GA+VN + + LH A R + ++LLRHGA+
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 97 PDLRDEDGKTPLDKARERVDEGHRE 121
P LR ++G TP A G +
Sbjct: 65 PVLRKKNGATPFLLA---AIAGSVK 86
Score = 83.7 bits (208), Expect = 7e-21
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 21 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNKG--QRSSSLHY 77
A + + + G T L A+ G E+++ L E GADVN ++L +
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Query: 78 AACFGRPS----VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
A S + +LL HGA+ ++R E GKTPL A V++ H
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA---VEKKHLG 233
Score = 81.4 bits (202), Expect = 5e-20
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS------------L 75
S G +VN D G T A+ +G + ++FL +RGA+VN +++ L
Sbjct: 93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152
Query: 76 HYAACFGRPSVAKVLLRH-GANPDLRDEDGKTPLDKARERVDEGHRE 121
AA G V K+LL GA+ + D G+ L A +
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA---LLSSDDS 196
Score = 72.1 bits (178), Expect = 2e-16
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNKGQRS--SSLHYAACFGRPSV 86
G +VN + G+T L A +V+ L E+ ++N ++L A +
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268
Query: 87 AKVLLRHGANPDLRD 101
A++L + GA+ D D
Sbjct: 269 AELLCKRGASTDCGD 283
Score = 51.3 bits (124), Expect = 5e-09
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 68
++ +E+N D G+T L A +++ E LC+RGA +
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 87.6 bits (218), Expect = 1e-22
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSSLHYAACFGRPSV 86
+ + G T L+ AS G +VE L GADVN ++LH A P +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 87 AKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+LL+ GA+ + G +P R
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGR---PSTR 198
Score = 82.2 bits (204), Expect = 1e-20
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 37 DDVGQTLLNWASAFG----TQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVL 90
+ G + L+ A T E++ + A +N + + LH A +P +A+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 91 LRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L G +P+LRD G TPL A ++G
Sbjct: 65 LGAGCDPELRDFRGNTPLHLA---CEQGCLA 92
Score = 81.8 bits (203), Expect = 2e-20
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
+I + +NF +++ QT L+ A E+ E L G D + LH A
Sbjct: 27 VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 80 CFGRPSVAKVLLRHGANPDL------RDEDGKTPLDKARERVDEGHRE 121
G + VL + P L + +G T L A G+
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA---SIHGYLG 131
Score = 76.0 bits (188), Expect = 2e-18
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 28 SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRP 84
S G +VN + G+T L+ A ++V L + GADVN+ S
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST 197
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARE 113
+ + L + + + E
Sbjct: 198 RIQQQLGQLTLENLQMLPESEDEESYDTE 226
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 82.8 bits (206), Expect = 2e-22
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
G+T L+ A+ G E+V+ L E GADVN + LH AA G V K+LL GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 98 DLRDEDGKTPLDKARERVDEGHRE 121
+ +D++G+TPL A GH E
Sbjct: 62 NAKDKNGRTPLHLA---ARNGHLE 82
Score = 68.5 bits (169), Expect = 9e-17
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQR--SSSLHYAACFGRPS 85
G +VN D G+T L+ A+ G E+V+ L E GADVN + + LH AA G
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 86 VAKVLLRHGA 95
V K+LL GA
Sbjct: 83 VVKLLLEAGA 92
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 84.8 bits (211), Expect = 1e-21
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNKG--QRSSSLHYAACFGRP 84
G V D Q L+ A++ G+ +++E LC G + VN Q + L +A G
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 85 SVAKVLL-RHGANPDLRDEDGKTPLDKA 111
A +L+ ++GA DL D G D A
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Score = 83.7 bits (208), Expect = 2e-21
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS-----LHYAACFG 82
S + D G+ L+W+ +F E+ FL + +VN H A G
Sbjct: 24 SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83
Query: 83 RPSVAKVLLRH--GANPDLRDEDGKTPLDKARERVDEGHRE 121
V K L + + G T L A V + E
Sbjct: 84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLA---VGKKWFE 121
Score = 83.3 bits (207), Expect = 4e-21
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 28 SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCER--GADVNKG--QRSSSLHYAAC 80
S VN D G T + A + G E+V+ L +R D+NK Q + LH A
Sbjct: 57 SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V++ L+ +GA+ ++D+ + PL +A G +
Sbjct: 117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRA---ASVGSLK 154
Score = 75.6 bits (187), Expect = 3e-18
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 39 VGQTLLNWASAFG-TQEMVEFLCERGADVNK----GQRSSSLHYAACFGRPSVAKVLLRH 93
+ L+ A ++ E L + + + + G+ LH++ F + LL
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR--IPLHWSVSFQAHEITSFLLSK 58
Query: 94 GANP---DLRDEDGKTPLDKARERVDEGHRE 121
N D D+ G TP A G+ E
Sbjct: 59 MENVNLDDYPDDSGWTPFHIA---CSVGNLE 86
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 86.9 bits (216), Expect = 1e-21
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK----GQRSSSLHYAACFG 82
G + G+T L++A+ +V++L E+G++ +K G+ + + AA G
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK--TPIMLAAQEG 324
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
R V L++ GA+ + D T A+ H
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHTARQLAQAN---NHHN 360
Score = 80.4 bits (199), Expect = 3e-19
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL--------CERGADVNKGQRS--SSLHY 77
V + +T+L+W ++ + E E L GADVN + L
Sbjct: 114 RESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 78 AACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
A R + L++ GA+P + ++ ++ L +A
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQA---AANRDFG 213
Score = 76.9 bits (190), Expect = 4e-18
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 13/109 (11%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQ-RSSSLHYAAC 80
L + + + L+ A G+ + E + ++ + + LH+ A
Sbjct: 76 LGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHNRTVLHWIAS 134
Query: 81 FGRPSVAKVLLRH--------GANPDLRDEDGKTPLDKARERVDEGHRE 121
++ L+ H GA+ + D D TPL A V R
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA---VLARRRR 180
Score = 73.4 bits (181), Expect = 9e-17
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 19/110 (17%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL---CERGADVNKGQR--SSSLHYAACFG 82
G + + ++ L+ A+A M+ ++ + D+ + R ++L A
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246
Query: 83 ---RPSVAKVLLRHGANPDLR--------DEDGKTPLDKARERVDEGHRE 121
+ + AK+L+ GA D G+T L A +
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA---AQVSNMP 293
Score = 69.6 bits (171), Expect = 2e-15
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
+ G + D+ G+T + A+ G E+V +L ++GA V ++ A
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH--TARQLAQAN 356
Query: 82 GRPSVAKVLLRHGANPD 98
++ + R +
Sbjct: 357 NHHNIVDIFDRCRPERE 373
Score = 61.5 bits (150), Expect = 1e-12
Identities = 10/100 (10%), Positives = 21/100 (21%), Gaps = 12/100 (12%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACF 81
+E + + + Q L AS G + + +
Sbjct: 20 PMENEEKNR-KNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGN 71
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G + + P + + L G
Sbjct: 72 GNDFLGDFNHTNLQIPTEPEPESPIKLHTEA----AGSYA 107
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 86.1 bits (214), Expect = 2e-21
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS- 72
++ D + G V V + A+ QE+++ L E+ +V + +
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTG 323
Query: 73 -SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKAR 112
P+V ++ L A R ++
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364
Score = 86.1 bits (214), Expect = 2e-21
Identities = 12/109 (11%), Positives = 25/109 (22%), Gaps = 18/109 (16%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--------------- 72
G++VN D+ L + + + L ++
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291
Query: 73 SSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ AA + V ++L G K +
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKR---KKKAAPA 337
Score = 85.7 bits (213), Expect = 3e-21
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACF 81
D + DD ++ A+ G + V L E G G ++LH A F
Sbjct: 6 TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC--TALHLACKF 63
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G AK L G G+ P+ A V +
Sbjct: 64 GCVDTAKYLASVGEVHS--LWHGQKPIHLA---VMANKTD 98
Score = 85.3 bits (212), Expect = 4e-21
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-----GADVNKGQRS--SSLHYAAC 80
G D +T L A F +E ++ + + ++ + S LH+A
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
VA + G + ++ D + PL + V
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLS---VRAAMVL 258
Score = 78.8 bits (195), Expect = 1e-18
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 17/126 (13%)
Query: 10 LIECIRSKDTDALIETIDSGGVEV-----NFMDDVGQTLLNWASAFGTQ--EMVEFLCER 62
L+E + + + EV + GQT L+W G + EM++ L +
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162
Query: 63 GADVNKGQRS--SSLHYAACFGRPSVAKVLL-----RHGANPDLRDEDGKTPLDKARERV 115
GA ++ + L A F +++ + D ++ G + L A +
Sbjct: 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA---I 219
Query: 116 DEGHRE 121
+
Sbjct: 220 LINWED 225
Score = 78.4 bits (194), Expect = 1e-18
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 9/94 (9%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVA 87
GV + G T L+ A FG + ++L G + +H A + +
Sbjct: 41 ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV 100
Query: 88 KVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L+ G+ P + RE
Sbjct: 101 VALVEGAKE------RGQMPESLL---NECDERE 125
Score = 77.6 bits (192), Expect = 3e-18
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 22 LIET-IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYA 78
+++T + +++ + G + L+WA +++ E G DVN + + L+ +
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251
Query: 79 ACFGRPSVAKVLLRHGANP---DLRDEDGKTPLDKARER-------VDEGHRE 121
+ K LL+ +G T L D +E
Sbjct: 252 VRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304
Score = 59.5 bits (145), Expect = 8e-12
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 51 GTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
G M +F + K + +H AA G+ + L+ G +P +++ G T L
Sbjct: 1 GPGSMTDFP---KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL 57
Query: 109 DKARERVDEGHRE 121
A G +
Sbjct: 58 HLA---CKFGCVD 67
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 83.8 bits (208), Expect = 2e-21
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 16 SKDT-DALIET-IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQ 70
+ + L+E + + GQT L+ A +V L RGA V+ G
Sbjct: 49 NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS 108
Query: 71 RSSS------------LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEG 118
L +AAC G + ++L+ HGA+ +D G T L + +
Sbjct: 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL---ILQP 165
Query: 119 HRE 121
++
Sbjct: 166 NKT 168
Score = 78.0 bits (193), Expect = 5e-19
Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 15 RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS 74
+ D AL + + G EV+ +G+T L+ A+ + E L E ++ +S
Sbjct: 12 KENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSE 71
Query: 75 -------LHYAACFGRPSVAKVLLRHGANPDLRDED-------------GKTPLDKARER 114
LH A ++ + LL GA+ R G+ PL A
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA--- 128
Query: 115 VDEGHRE 121
G E
Sbjct: 129 ACVGSEE 135
Score = 70.7 bits (174), Expect = 2e-16
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 25/122 (20%)
Query: 14 IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KG 69
+ ++ T + + G+ L++A+ G++E+V L E GAD+ G
Sbjct: 101 VSARATG------SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 70 QRSSSLHYAACFGRPSVA----KVLLRHGAN------PDLRDEDGKTPLDKARERVDEGH 119
+ LH + A +LL + + + G TP A EG+
Sbjct: 155 N--TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA---GVEGN 209
Query: 120 RE 121
Sbjct: 210 IV 211
Score = 68.4 bits (168), Expect = 2e-15
Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 12/88 (13%)
Query: 30 GVEVNFMDDVGQTLLNWASAFGTQEMV----EFLCERGADVNKGQRSSS--------LHY 77
G ++ D +G T+L+ + L +
Sbjct: 144 GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Query: 78 AACFGRPSVAKVLLRHGANPDLRDEDGK 105
A G + + L++ +
Sbjct: 204 AGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 53.0 bits (128), Expect = 9e-10
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 75 LHYAACFGR-PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
L AA +++K+L G R G+T L A + E
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA---ALYDNLE 51
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 83.5 bits (207), Expect = 3e-21
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 28 SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFG 82
LL A+ G E+V+ + D ++ + ++LH A C
Sbjct: 6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
S+ L+ GAN + D G TPL A
Sbjct: 66 NYSIVDFLITAGANVNSPDSHGWTPLHCA---ASCNDTV 101
Score = 74.6 bits (184), Expect = 8e-18
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS---SSLHYAACF--G 82
+ G VN D G T L+ A++ + L + GA + S ++ + G
Sbjct: 75 TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134
Query: 83 RPSVAKVLLRHGANPDLRDEDGKTPL-DKARERVDE 117
A L + L + L D + E DE
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE 170
Score = 66.9 bits (164), Expect = 6e-15
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 56 VEFLCERGADVNKGQRSS-----SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK 110
+ + + K +R+ L AA G V + ++ +P +E+G T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 111 ARERVDEGHRE 121
A + +
Sbjct: 61 A---ICGANYS 68
Score = 61.1 bits (149), Expect = 1e-12
Identities = 10/98 (10%), Positives = 18/98 (18%), Gaps = 7/98 (7%)
Query: 28 SGGVEVNFMDDV-GQTLLNWASAF--GTQEMVEFLCERGADVNKGQRS-SSLHYAACFGR 83
G + G T + G + +L + + +
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
RD +T A G
Sbjct: 168 GDELSFREGESVTVLRRDGPEETDWWWAAL---HGQEG 202
Score = 40.7 bits (96), Expect = 2e-05
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK--GQRSSSLHYAA 79
+ + M+ L SA E + F V + G + +AA
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAA 196
Query: 80 CFGRPS-VAKVLLRHGANPDLRDEDGKTPLD 109
G+ V + G P ++ + K
Sbjct: 197 LHGQEGYVPRNYF--GLFPRVKPQRSKVKHH 225
Score = 32.6 bits (75), Expect = 0.018
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVE 57
S + + + V V D +T WA+ G + V
Sbjct: 164 SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 78.4 bits (194), Expect = 2e-20
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 47 ASAFGTQEMVEFLCERGADVN-KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGK 105
S+ L RG+ + L AA G+ ++L+ +GA+ +D++G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG--KKLLEAARAGQDDEVRILMANGADVAAKDKNGS 58
Query: 106 TPLDKARERVDEGHRE 121
TPL A GH E
Sbjct: 59 TPLHLA---ARNGHLE 71
Score = 76.8 bits (190), Expect = 1e-19
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK----GQRSSSLHYAACFGR 83
G + D L A+ G + V L GADV G + LH AA G
Sbjct: 15 PRGSHMG--SD-LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGH 69
Query: 84 PSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
V K+LL GA+ +D+ GKT D + +D G+ +
Sbjct: 70 LEVVKLLLEAGADVXAQDKFGKTAFDIS---IDNGNED 104
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 81.1 bits (200), Expect = 3e-20
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKG--QRSSSLHYAACFGRPSVAKVLLRHGANP 97
+ N A + E+ E + + + ++LH+A G + + LL+ G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 98 DLRDEDGKTPLDKA 111
+ +D+ G +PL A
Sbjct: 67 NDKDDAGWSPLHIA 80
Score = 80.7 bits (199), Expect = 4e-20
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
+ D +T L+WA + G E+VEFL + G VN + S LH AA G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARER 114
+ K LL GA+ + +++G TPL A +
Sbjct: 88 IVKALLVKGAHVNAVNQNGCTPLHYAASK 116
Score = 72.2 bits (177), Expect = 8e-17
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--S 73
SK+ + + GG + D T ++ A+A G +MV L A N +
Sbjct: 115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
LH A R AK L+ GA+ + +++ KTPL A+ +
Sbjct: 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217
Score = 71.4 bits (175), Expect = 1e-16
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAACFGRPS 85
GV VN DD G + L+ A++ G E+V+ L +GA VN ++ + LHYAA R
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 86 VAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+A +LL GANPD +D T + +A +G+ +
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRA---AAKGNLK 153
Score = 70.7 bits (173), Expect = 3e-16
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 16 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--S 73
S D +++ + G VN ++ G T L++A++ E+ L E GA+ + +
Sbjct: 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
++H AA G + +LL + A+ +++D +G TPL A DE E
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA---CDEERVE 186
Score = 58.3 bits (141), Expect = 1e-11
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRS--SSLHYAA 79
++ + N D G T L+ A E +FL +GA + + + L A
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Query: 80 CFGRPSVAKVLLRHGANPDL 99
G + L G +
Sbjct: 214 --GGLGLILKRLAEGEEASM 231
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 81.0 bits (200), Expect = 8e-20
Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 27/133 (20%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
L++ ++ TD+L + + GQT L+ A +V L E GADV
Sbjct: 74 ALLLD--VARKTDSLKQFV---NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128
Query: 68 KGQRSSS----------------LHYAACFGRPSVAKVLLRHG---ANPDLRDEDGKTPL 108
L AAC + ++ K LL++ A+ RD G T L
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL 188
Query: 109 DKARERVDEGHRE 121
V+
Sbjct: 189 HAL---VEVADNT 198
Score = 66.7 bits (163), Expect = 1e-14
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 20/123 (16%)
Query: 16 SKDTDALIETID---SGGVEVNFMD-DVGQTLLNWASAF---GTQEMVEFLCERGADVNK 68
++ ++L+ + + F D + G+T L A G + + L + +
Sbjct: 26 CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85
Query: 69 GQR-------------SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
++ ++LH A ++ +L+ +GA+ K R
Sbjct: 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 116 DEG 118
G
Sbjct: 146 YFG 148
Score = 54.0 bits (130), Expect = 6e-10
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 28/109 (25%)
Query: 30 GVEVNFMDDVGQTLLNWASAFG---------TQEMVEFLCERGADVNKGQRSSS------ 74
+++ D VG T+L+ M + GA ++ +
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233
Query: 75 ---LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHR 120
L AA G+ V +L+ + A H
Sbjct: 234 LTPLALAASSGKIGVLAYILQREIH-------EPECRHAA---AHHHHH 272
Score = 44.4 bits (105), Expect = 1e-06
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACFG 82
+ + G T L A++ G ++ ++ +R H AA
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP-----ECRHAAAHHH 270
Score = 39.0 bits (91), Expect = 1e-04
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 75 LHYAACFGRPSVAKVLLR-------HGANPDLRD-EDGKTPLDKARERVDEGHRE 121
+ A + LL + + +D E GKT L KA + G +
Sbjct: 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND 71
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 78.3 bits (193), Expect = 6e-19
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 33 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN---KGQRSSS-------------LH 76
+ GQT L+ A + VE L E+GADV+ +G+ L
Sbjct: 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145
Query: 77 YAACFGRPSVAKVLLRHG---ANPDLRDEDGKTPL 108
AAC +P + L +G A+ +D G T L
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 55.6 bits (134), Expect = 1e-10
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 20/124 (16%)
Query: 16 SKDTDALIETIDSGGVEVNFMD----DVGQTLLNWA---SAFGTQEMVEFLCERGADVNK 68
+ L+ + + + + G+T L A + G + + L +
Sbjct: 18 PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN 77
Query: 69 GQR-------------SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERV 115
+ ++LH A ++L+ GA+ +
Sbjct: 78 MREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137
Query: 116 DEGH 119
G
Sbjct: 138 YFGE 141
Score = 53.6 bits (129), Expect = 6e-10
Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 32/136 (23%)
Query: 10 LIEC---IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG--- 63
L+E + ++ + D GG G+ L+ A+ +V +L E G
Sbjct: 112 LVEKGADVHAQARGRFFQPKDEGGYFYF-----GELPLSLAACTNQPHIVHYLTENGHKQ 166
Query: 64 ADVNKGQRS--SSLHYAACFG---------RPSVAKVLLRHGAN-------PDLRDEDGK 105
AD+ + + LH + +LL A L + DG
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226
Query: 106 TPLDKARERVDEGHRE 121
+PL A G
Sbjct: 227 SPLMMA---AKTGKIG 239
Score = 51.3 bits (123), Expect = 5e-09
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 22/94 (23%)
Query: 33 VNFMDDVGQTLLNWASAFG---------TQEMVEFLCERGADVNKGQRSSS--------- 74
+ D G T+L+ A +M + L + A + +
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
Query: 75 LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
L AA G+ + + ++R D
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIA----DAAAHHHH 258
Score = 45.5 bits (108), Expect = 5e-07
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 23/95 (24%)
Query: 47 ASAFGTQEMVEFLCERGADVN-KGQRSSS-----LHYAA---CFGRPSVAKVLLRHGANP 97
S G + ++ FL + + R S L A GR +LL
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 98 DL-----------RDEDGKTPLDKARERVDEGHRE 121
G+T L A ++ +
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIA---IERRCKH 107
Score = 39.4 bits (92), Expect = 9e-05
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 74 SLHYAACFGRP----SVAKVLLRHGAN----PDLRDEDGKTPLDKARERVDEGHRE 121
L G P + LL H GKT L KA + G +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63
Score = 34.8 bits (80), Expect = 0.003
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHY 77
+ +++ G + L A+ G + + + R H+
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAH--HHHHH 260
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 75.9 bits (187), Expect = 1e-18
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 18/107 (16%)
Query: 30 GVEVNFMDDVGQTLLNWASAFG------TQEMVEFLCERGADVNK--GQRSSSLHYAACF 81
G ++ G TL G T E+ + E+GAD+ +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 82 GRPSVAK-------VLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + + G ++D+ G T L+ +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC---QKPI 168
Score = 75.1 bits (185), Expect = 2e-18
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 17/124 (13%)
Query: 10 LIECIRSKDTDALIETIDSGGV--EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
+ + +E + G E ++ +L + ++ FL +GAD+
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69
Query: 68 ----KGQRSSSLHYAACFGRPSV------AKVLLRHGANPDLRDEDGKTPLDKARERVDE 117
+G + G + K+ L GA+ + K + K +
Sbjct: 70 SRTKEGT--TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN---IFN 124
Query: 118 GHRE 121
+
Sbjct: 125 YFVD 128
Score = 68.9 bits (169), Expect = 6e-16
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 40 GQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACF-----GRPSVAKVLLRHG 94
++ A+ GT E L E+G + + S++ Y R ++ L+ G
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 95 ANPDLRDEDGKTPLDKARERVDEGHRE 121
A+ R ++G T G +
Sbjct: 66 ADIKSRTKEGTTLFFPL---FQGGGND 89
Score = 67.4 bits (165), Expect = 2e-15
Identities = 8/87 (9%), Positives = 27/87 (31%), Gaps = 13/87 (14%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVE-------FLCERGADVN----KGQRSSSLH 76
G ++ + + ++ + E + G + G ++L
Sbjct: 102 EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL--TALE 159
Query: 77 YAACFGRPSVAKVLLRHGANPDLRDED 103
+ +P K++ + +L++
Sbjct: 160 FVKRCQKPIALKMMEDYIKKYNLKENS 186
Score = 49.7 bits (119), Expect = 1e-08
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 26 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
G+++ D G T L + ++ + + N
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 76.4 bits (187), Expect = 9e-18
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 6 PKRQLIECIRSKDTDALIETIDSGGVEVNFM--DDVGQTLLNWASAFGTQEMVEFLCERG 63
P L + + + G +VN++ T L A+A + EFL + G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 64 ADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
A+VN+ LH+A G +A + L+ GA+ RD +G+ PL A E
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 74.3 bits (182), Expect = 4e-17
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 20 DALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCERGADVN----KGQRSSS 74
+ + + + +N +D+ G T L+W ++ E+V+ L + G++ G+ S
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE--SC 167
Query: 75 LHYAA----CFGRPSVAKVLLRHGANPDLRDEDGKTPL 108
L A + + +L L D +T L
Sbjct: 168 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205
Score = 67.7 bits (165), Expect = 9e-15
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 18 DTDALIETIDSGGVEVNFMDDVGQTLLNWASA-FGTQEMVEFLCERGADVNK---GQRSS 73
+ + ++++ N S QE+ + ++N ++
Sbjct: 74 EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT 133
Query: 74 SLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
LH+ + K L++HG+N D G++ L KA
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
Score = 66.2 bits (161), Expect = 3e-14
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 20 DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV--------NKGQR 71
D L+ I + ++ + + + + G
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD- 284
Query: 72 SSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARE 113
+ L+ AA G S+ LL +GA+P + ++ G P+D
Sbjct: 285 -TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 73.0 bits (179), Expect = 2e-16
Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 2 QTCWPKRQLIECIRSKDTDALIETIDSGG-----VEVNFMDDVGQTLLNWASAF---GTQ 53
+ ++L I ++D +++E +G + + +L+ A +
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187
Query: 54 EMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKA 111
+V+F+ + G ++ +++LHYAA + +P K+LL+ A +E G+T LD A
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Query: 112 RER 114
R++
Sbjct: 248 RKK 250
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 69.3 bits (169), Expect = 2e-15
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 6 PKRQLIECIRSKDTDALIETIDSGGVEVNFM------DDVGQTLLNWASAFGTQ---EMV 56
L E ++++D L++ G V++ + +T L+ A + +V
Sbjct: 130 KLHSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188
Query: 57 EFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARER 114
+FL + +++K G+ S++LHY K+LLR A+ ++ +E G+TPLD A+
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
Query: 115 VDEGHRE 121
H
Sbjct: 249 ---KHEH 252
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 68.9 bits (168), Expect = 2e-15
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 40 GQTLLNWASAFGTQ---EMVEFLCERGADVNK--GQRSSSLHYAACFGRPSVAKVLLRHG 94
+ +L+ A Q +V+F+ + G ++ +++LHYAA + +P K+LL+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 95 ANPDLRDEDGKTPLDKARER 114
A +E G+T LD AR++
Sbjct: 250 ALVGTVNEAGETALDIARKK 269
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 64.8 bits (158), Expect = 6e-14
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 27/125 (21%)
Query: 21 ALIETIDSGGV---EVNFMDDVGQTLLNWASAFGTQEMVEFLCERG---ADVN------- 67
A + G G+ L+ A+ ++V +L E A +
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN 173
Query: 68 -----------KGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
+S+L G + L ++ + G TPL A
Sbjct: 174 TVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA---AK 230
Query: 117 EGHRE 121
EG E
Sbjct: 231 EGKIE 235
Score = 59.4 bits (144), Expect = 6e-12
Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 16/111 (14%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAF---GTQEMVEFLCERGADVNKGQRSSS---- 74
L G+T L A G + L + D + +
Sbjct: 25 LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84
Query: 75 ---------LHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVD 116
LH A K+L+ +GA+ LR +
Sbjct: 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF 135
Score = 56.0 bits (135), Expect = 1e-10
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 14 IRSKDTDALIETIDSGG------VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
+ + A +E DS G + + + + L G +M LC
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215
Query: 68 ----KGQRSSSLHYAACFGRPSVAKVLLRHGANPD 98
+G + L AA G+ + + +L+ +
Sbjct: 216 ISNHQGL--TPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 37.1 bits (86), Expect = 5e-04
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 24 ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAA 79
+ + G T L A+ G E+ + +R ++ H+
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA-----AAHHHHH 255
Score = 33.2 bits (76), Expect = 0.011
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 8/55 (14%)
Query: 75 LHYAACFGRPSVAKVLLRH--------GANPDLRDEDGKTPLDKARERVDEGHRE 121
L G P LL + + GKT L KA + +G
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 61.9 bits (150), Expect = 1e-12
Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 10/99 (10%)
Query: 28 SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSS----LHYAACFGR 83
+ V + A+ G ++ LCE + AA G
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175
Query: 84 PSVAKVLLRHGANP---DLRDEDGKTPLDKARERVDEGH 119
V L ++ E+ A R GH
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR---GH 211
Score = 54.2 bits (130), Expect = 6e-10
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 8 RQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 67
L++ IR + I+ + LL A G Q L + +
Sbjct: 291 EVLLDDIRFLLSIPGIKA----LAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346
Query: 68 KGQRSSSLHYAACFGRPSVAKVLLRHGAN 96
+ ++ + GR + V L H +
Sbjct: 347 LTKA-NNYYINETGGRLDLRAVALEHHHH 374
Score = 45.7 bits (108), Expect = 6e-07
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 12/97 (12%)
Query: 20 DALIETIDSGGVEV--NFMDDVGQTLLNWASAFGTQEMVEFLC--------ERGADVNK- 68
DA + G ++ G +L + +++ + + A
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315
Query: 69 -GQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDG 104
G + L A G +LL + L +
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352
Score = 37.6 bits (87), Expect = 4e-04
Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Query: 51 GTQEMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLDK 110
+++ ++G +++ C +LL + +
Sbjct: 77 NAKQLWSDAHKKGIKSEVICFVAAI--TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134
Query: 111 ARERVDEGHRE 121
A + GH
Sbjct: 135 A---AENGHLH 142
Score = 34.5 bits (79), Expect = 0.004
Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 13/100 (13%)
Query: 22 LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGQRSSSLHYAACF 81
L E + + A G ++ FL + + + + +
Sbjct: 182 LCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-----AEIHEFEY 235
Query: 82 GRPSVAKVLLRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
G V + RH ++ + +G +
Sbjct: 236 GEKYVNPFIARHVNR----LKEMHDAFKLS---NPDGVFD 268
Score = 34.2 bits (78), Expect = 0.006
Identities = 8/107 (7%), Positives = 22/107 (20%), Gaps = 33/107 (30%)
Query: 45 NWASAFGTQEMVEFLCERGADVNKGQRS----------------------SSLHYAACFG 82
+G + + F+ + + + L
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN 289
Query: 83 RPSVAKVL--------LRHGANPDLRDEDGKTPLDKARERVDEGHRE 121
+ + ++ A D L A + G++
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA---LRLGNQG 333
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.99
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 50/128 (39%)
Query: 6 PKRQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN------------------WA 47
+ Q +R AL+E + V ++ + G+T + W
Sbjct: 132 SRLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 48 SAFGTQ-------EMVEFLCERGADVNKGQRSSSLHYAACFGRPSVAKVLLRHGANPDLR 100
+ EM++ L + D N RS H +N LR
Sbjct: 188 N-LKNCNSPETVLEMLQKLLYQ-IDPNWTSRSD-------------------HSSNIKLR 226
Query: 101 DEDGKTPL 108
+ L
Sbjct: 227 IHSIQAEL 234
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 27.4 bits (62), Expect = 1.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGK 105
+G + + + G P R+ DG
Sbjct: 139 YGAERLFREFEKKGYKPSFREYDGV 163
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1-
butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB;
1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A*
3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 2b6d_A*
2b65_A* 2doj_A* 2dp8_A* 2dqv_A* 2ds9_A* 2dsf_A* 2dvc_A*
2dwa_A* 2dwh_A* ...
Length = 335
Score = 26.7 bits (58), Expect = 1.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 11 IECIRSKDTDALIETIDSGGVEVNFMD 37
+ C + TD I + G + +D
Sbjct: 28 VTCATASTTDDCIVLVLKGEADALNLD 54
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 26.4 bits (59), Expect = 2.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 51 GTQEMVEFLCERGADVNK 68
T EMVE L GAD+ K
Sbjct: 170 VTGEMVEELILSGADIIK 187
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 26.3 bits (59), Expect = 2.8
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGK 105
V + L G +R D K
Sbjct: 142 SAYRVVIRALSEMGGEAVIRLGDRK 166
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 76 HYAACFGRPSVAKVLLRHGANPDLRDEDGKTPLD 109
+ A P + +++ HG + D DG LD
Sbjct: 13 YLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLD 46
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP
metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B
1suv_E
Length = 342
Score = 26.0 bits (56), Expect = 3.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 11 IECIRSKDTDALIETIDSGGVEVNFMD 37
IEC+ ++ T+ I I +G + +D
Sbjct: 29 IECVSAETTEDCIAKIMNGEADAMSLD 55
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 25.7 bits (55), Expect = 4.6
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 11 IECIRSKDTDALIETIDSGGVEVNFMD 37
+ C + T+ I + G + +D
Sbjct: 369 VTCSSASTTEDCIALVLKGEADAMSLD 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 4.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 23 IETIDSGGVEVNFMDDVG 40
+ I +G +++N DD G
Sbjct: 525 VRVIVAGTLDINPDDDYG 542
Score = 25.0 bits (54), Expect = 8.1
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 47 ASAFGTQEMVEFLCERG----ADVNKGQRSSSLHYAACFGRPS-VAKVL 90
A + +VE + RG V + + S +Y P VA
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRS-NYGMIAINPGRVAASF 1821
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 25.5 bits (57), Expect = 4.8
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGK 105
FG + K + G P+LR + +
Sbjct: 143 FGYRATLKAIADLGGEPELRMDGDE 167
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 25.1 bits (56), Expect = 5.6
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGK 105
++ + L A +LR K
Sbjct: 143 QAWKAIIEELSIFNAKAELRMGVNK 167
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 25.2 bits (56), Expect = 5.7
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 8/36 (22%)
Query: 39 VGQTLLNWASAFG--------TQEMVEFLCERGADV 66
+G + + E L GA
Sbjct: 157 IGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAY 192
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 25.7 bits (55), Expect = 5.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 11 IECIRSKDTDALIETIDSGGVEVNFMD 37
+ C + TD I + G + +D
Sbjct: 369 VTCATASTTDDCIVLVLKGEADALNLD 395
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 25.3 bits (54), Expect = 6.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 11 IECIRSKDTDALIETIDSGGVEVNFMD 37
IEC+ ++ T+ I I +G + +D
Sbjct: 385 IECVSAETTEDCIAKIMNGEADAMSLD 411
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 25.3 bits (56), Expect = 7.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 51 GTQEMVEFLCERGADVNK 68
GT E V L GAD K
Sbjct: 158 GTPEAVRELENAGADATK 175
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 24.9 bits (55), Expect = 7.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 81 FGRPSVAKVLLRHGANPDLRDEDGKTPL 108
R ++ + L G P LR + TP
Sbjct: 150 MARTAIGRRLAALGGVPVLRVKQDGTPY 177
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 25.2 bits (56), Expect = 7.9
Identities = 2/14 (14%), Positives = 7/14 (50%)
Query: 13 CIRSKDTDALIETI 26
C+ + + +I +
Sbjct: 115 CLSESEEEKIISIV 128
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 24.9 bits (55), Expect = 8.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 52 TQEMVEFLCERGADVNK 68
T ++L GAD+ K
Sbjct: 151 TYAGADYLASCGADIIK 167
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics,
protein structure initiative, NYSGXRC, PSI; 2.80A
{Mycobacterium tuberculosis} SCOP: c.73.1.2
Length = 299
Score = 24.8 bits (55), Expect = 8.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 7 KRQLIECIRSKDTDALIETIDSG 29
+ L+ I + L+ T++ G
Sbjct: 222 RDSLVSEIDTGTLAQLLPTLELG 244
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 24.8 bits (55), Expect = 9.1
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 85 SVAKVLLRHGANPDLRDEDGKTPLDKARERVDEG 118
+ A++L + GA + D A+ ++EG
Sbjct: 23 AAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEG 56
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 24.8 bits (55), Expect = 9.1
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 13 CIRSKDTDALIETI 26
+ +KDT+ +I +
Sbjct: 111 VLDTKDTEEIISIV 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,863,127
Number of extensions: 99166
Number of successful extensions: 1056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 300
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)