BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15273
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 162 VACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMW 221
+A EG IIP L+S+ T LE L+ G P I + LK Y N I ++W W
Sbjct: 237 LAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFW 296
Query: 222 EVLDSFSHNERVLFMRFVSGRSRLP----ANLADLS--QRFQVMKVDRCIDGLPTAQTCF 275
L SF +R F++FV+G S++P A L ++ Q+FQ+ + DR D LP+A TCF
Sbjct: 297 RALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCF 356
Query: 276 FQLRLPNYSSKEVMAEKLRYAINNC 300
QL LP Y S E + L AI C
Sbjct: 357 NQLDLPAYESFEKLRHMLLLAIQEC 381
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 162 VACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMW 221
+A EG IIP L+S+ T LE L+ G P I + LK Y N I ++W W
Sbjct: 254 LAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFW 313
Query: 222 EVLDSFSHNERVLFMRFVSGRSRLP----ANLADLS--QRFQVMKVDRCIDGLPTAQTCF 275
L SF +R F++FV+G S++P A L ++ Q+FQ+ + DR D LP+A TCF
Sbjct: 314 RALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCF 373
Query: 276 FQLRLPNYSSKEVMAEKLRYAINNC 300
QL LP Y S E + L AI
Sbjct: 374 NQLDLPAYESFEKLRHMLLLAIQEA 398
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 21/182 (11%)
Query: 32 PSKVDSFTGAQ--QVVCGQN--CTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA 87
P V++ G + + CG T L + +V S G+G YG+LG+G SD P I +
Sbjct: 202 PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS 261
Query: 88 LLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQH 147
L G ++KV CGS S+ L +SG V++WG GD+ +LGHG+ D RRPRQ++ LQG+
Sbjct: 262 LTGLGVVKV--ECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKK 318
Query: 148 AVDVHY-RLHEM------------DTAVACIREGMARIIPVP-LLSLMTSSHLEQLVCGE 193
+ + LH + D + +G I P L++ + + ++ CG
Sbjct: 319 VIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGS 378
Query: 194 PH 195
H
Sbjct: 379 AH 380
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 25 GVNCSPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTP 82
G + VP K+DS TG +V CG + L +G+V + G+G Y RLG G D + P
Sbjct: 249 GSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRP 308
Query: 83 SIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEA 142
+ L G +I +AT H + E GEV++WGD D G+LG G ++ +RPR + A
Sbjct: 309 RQVQGLQGKKVIAIATG---SLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAA 365
Query: 143 LQGQ 146
LQG+
Sbjct: 366 LQGK 369
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 27 NCSPV--PSKVDSFTGAQ--QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTP 82
N SP P ++S G + V G + + G + + G+G YGRLG S+D P
Sbjct: 143 NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202
Query: 83 SIISALLGFIIIKVATSCGS-DGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIE 141
++ AL G ++ +A CGS D +L L + V+SWGDGD+GKLG G SD + P +I+
Sbjct: 203 KLVEALQGHRVVDIA--CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260
Query: 142 ALQGQHAVDV 151
+L G V V
Sbjct: 261 SLTGLGVVKV 270
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 47 GQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHS 106
G++C L G V S GE G+LG G+ P +I +L G ++ VA HS
Sbjct: 116 GKHC-LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHS 171
Query: 107 LGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDV 151
+ +G++++WG G +G+LGH +S+ Q +P+ +EALQG VD+
Sbjct: 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDI 216
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 30 PVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALL 89
P P + + Q++ G+ F + +G + + G G+ GRLG G ++ + TP+++ ++
Sbjct: 44 PTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQ 103
Query: 90 GFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAV 149
I KVA + G H L L+ GEV+SWG+ + GKLGHGN RPR IE+L+G V
Sbjct: 104 HVFIKKVAVNSGGK-HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162
Query: 150 DV 151
DV
Sbjct: 163 DV 164
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 39 TGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVAT 98
TG+ VC CT +G V + G+ G+LG G ++ + P +++AL G + +VA
Sbjct: 324 TGSLHCVC---CTE----DGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVA- 375
Query: 99 SCGSDGHSLGLAES 112
CGS H+L + S
Sbjct: 376 -CGS-AHTLAWSTS 387
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 155 LHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDEN 213
++ + +A +EG +IP L+ + + LE L+CG + ++ ++ +Y++ N
Sbjct: 228 VNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYKNGYSAN 287
Query: 214 HILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADL-----SQRFQVMKVDRCIDG 267
H +++W W+ + +R+ ++FV+G SR+P N A+L Q F V + +
Sbjct: 288 HQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQWG-TPEK 346
Query: 268 LPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSID 304
LP A TCF +L LP Y S E + +KL+ AI N + D
Sbjct: 347 LPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQGFD 383
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 151 VHYR-LHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
V++R L ++ +++G +IP LL LE ++CG I ++ K R +
Sbjct: 218 VNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH 277
Query: 210 LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQ------RFQVMKVDR 263
+ +V+W W+ ++ F R ++FV+G SR+P Q F + ++D
Sbjct: 278 CTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDA 337
Query: 264 CIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAI 297
C + LP A TCF ++ +P Y S E + EKL AI
Sbjct: 338 CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAI 371
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 7/143 (4%)
Query: 167 EGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDS 226
EG I+P L + LE L+CG I L+ ++ YR + W W+ +
Sbjct: 254 EGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAIYRRYARTSKQIMWFWQFVKE 313
Query: 227 FSHNERVLFMRFVSGRSRLP-ANLADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRL 280
+ +R+ ++FV+G RLP ADL Q+F + KV + + LP + TCF +L L
Sbjct: 314 IDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCIEKVGKE-NWLPRSHTCFNRLDL 372
Query: 281 PNYSSKEVMAEKLRYAINNCKSI 303
P Y S E + EKL +AI +
Sbjct: 373 PPYKSYEQLKEKLLFAIEETEGF 395
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 176 PLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDENHILVRWMWEVLDSFSHNERVL 234
PL L +E L+CG ++ L++ Y + +L+R WE++ SF+ ++ L
Sbjct: 228 PLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRL 287
Query: 235 FMRFVSGRSRLP-ANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKL 293
F++F +G R P L L + + K + LPT+ TCF L LP YSSKE + E+L
Sbjct: 288 FLQFTTGTDRAPVGGLGKL--KMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERL 345
Query: 294 RYAINNCKSIDM 305
AI K M
Sbjct: 346 LKAITYAKGFGM 357
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 30 PVPSKVDSFTGAQ--QVVCGQNCTFVLQVNG-SVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P P+++ + G Q V CG + T +G V S G G +GRLG G+S DL TP I
Sbjct: 57 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK 116
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
AL G I ++A CG D H L + GEV SWG G+LG G+++ P++I+A +G
Sbjct: 117 ALHGIRIKQIA--CG-DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 60 VLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESG-EVFSW 118
V S G G G+LG G ++D +P+ +SAL G I+ V +CG+D H++ ++SG EV+SW
Sbjct: 37 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV--TCGAD-HTVAYSQSGMEVYSW 93
Query: 119 GDGDFGKLGHGNSDRQRRPRQIEALQG 145
G GDFG+LGHGNS P I+AL G
Sbjct: 94 GWGDFGRLGHGNSSDLFTPLPIKALHG 120
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P+P K +Q+ CG + + + G V S G G+LG G ++D P I A
Sbjct: 111 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
G I VA G++ H+ + E G+++ WG G +G LG G+ + P ++ + G+
Sbjct: 171 EGIRIKMVA--AGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 225
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 31 VPSKVDSFTGAQQ--VVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
VP +V S G + V CG T + +G++ + G YG+LG G +D P + AL
Sbjct: 215 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 274
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
I +++ G H++ L G+++ WG FG++G GN+ Q P Q+ Q
Sbjct: 275 SNSFISQIS---GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 331
Query: 149 VDV 151
V V
Sbjct: 332 VQV 334
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 31 VPSKVDSFTGA--QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P K+++ + + Q+ G T L +G + G +G++G G++ D +P +
Sbjct: 267 IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
+++V SCG H+L + E VF+WG G G+LG G S + P+ IEAL A
Sbjct: 327 DDQKVVQV--SCGWR-HTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVDGA 383
Query: 149 VDVHYRLHEMDTA 161
H +D +
Sbjct: 384 SGQHIESSNIDPS 396
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 28/141 (19%)
Query: 74 GHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDR 133
G ++D+ + + +II S HS+ L V SWG G+ G+LGHG+++
Sbjct: 1 GMAEDMAADEVTAPPRKVLIISAGAS-----HSVALLSGDIVCSWGRGEDGQLGHGDAED 55
Query: 134 QRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGM----------ARI---------IP 174
+ P Q+ AL G V V D VA + GM R+ P
Sbjct: 56 RPSPTQLSALDGHQIVSV---TCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTP 112
Query: 175 VPLLSLMTSSHLEQLVCGEPH 195
+P+ +L ++Q+ CG+ H
Sbjct: 113 LPIKALH-GIRIKQIACGDSH 132
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 28 CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA 87
CSPV + QV CG T + +V + G G+ G+LG G S D + P II A
Sbjct: 318 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA 377
Query: 88 L 88
L
Sbjct: 378 L 378
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 30 PVPSKVDSFTGAQ--QVVCGQNCTFVLQVNG-SVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P P+++ + G Q V CG + T +G V S G G +GRLG G+S DL TP I
Sbjct: 47 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIK 106
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
AL G I ++A CG D H L + GEV SWG G+LG G+++ P++I+A +G
Sbjct: 107 ALHGIRIKQIA--CG-DSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 162
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 60 VLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESG-EVFSW 118
V S G G G+LG G ++D +P+ +SAL G I+ V +CG+D H++ ++SG EV+SW
Sbjct: 27 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV--TCGAD-HTVAYSQSGXEVYSW 83
Query: 119 GDGDFGKLGHGNSDRQRRPRQIEALQG 145
G GDFG+LGHGNS P I+AL G
Sbjct: 84 GWGDFGRLGHGNSSDLFTPLPIKALHG 110
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P+P K +Q+ CG + + G V S G G+LG G ++D P I A
Sbjct: 101 TPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 160
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
G I VA G++ H+ + E G+++ WG G +G LG G+ + P ++ + G+
Sbjct: 161 EGIRIKXVA--AGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 215
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 31 VPSKVDSFTGAQQ--VVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
VP +V S G + V CG T + +G++ + G YG+LG G +D P + AL
Sbjct: 205 VPERVTSTGGEKXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 264
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
I +++ G H+ L G+++ WG FG++G GN+ Q P Q+ Q
Sbjct: 265 SNSFISQIS---GGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 321
Query: 149 VDV 151
V V
Sbjct: 322 VQV 324
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 31 VPSKVDSFTGA--QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P K+++ + + Q+ G T L +G + G +G++G G++ D +P +
Sbjct: 257 IPHKLEALSNSFISQISGGARHTXALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 316
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEAL 143
+++V SCG H+L + E VF+WG G G+LG G S + P+ IEAL
Sbjct: 317 DDQKVVQV--SCGWR-HTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 368
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 105 HSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVAC 164
HS+ L V SWG G+ G+LGHG+++ + P Q+ AL G V V D VA
Sbjct: 17 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV---TCGADHTVAY 73
Query: 165 IREG----------MARI---------IPVPLLSLMTSSHLEQLVCGEPH 195
+ G R+ P+P+ +L ++Q+ CG+ H
Sbjct: 74 SQSGXEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH-GIRIKQIACGDSH 122
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 28 CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA 87
CSPV + QV CG T + +V + G G+ G+LG G S D + P II A
Sbjct: 308 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA 367
Query: 88 L 88
L
Sbjct: 368 L 368
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 30 PVPSKVDSFTGAQ--QVVCGQNCTFVLQVNG-SVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P P+++ + G Q V CG + T +G V S G G +GRLG G+S DL TP I
Sbjct: 45 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK 104
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
AL G I ++A CG D H L + GEV SWG G+LG G+++ P++I+A +G
Sbjct: 105 ALHGIRIKQIA--CG-DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 160
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 60 VLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESG-EVFSW 118
V S G G G+LG G ++D +P+ +SAL G I+ V +CG+D H++ ++SG EV+SW
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV--TCGAD-HTVAYSQSGMEVYSW 81
Query: 119 GDGDFGKLGHGNSDRQRRPRQIEALQG 145
G GDFG+LGHGNS P I+AL G
Sbjct: 82 GWGDFGRLGHGNSSDLFTPLPIKALHG 108
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P+P K +Q+ CG + + + G V S G G+LG G ++D P I A
Sbjct: 99 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 158
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
G I VA G++ H+ + E G+++ WG G +G LG G+ + P ++ + G+
Sbjct: 159 EGIRIKMVA--AGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 213
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 31 VPSKVDSFTGAQQ--VVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
VP +V S G + V CG T + +G++ + G YG+LG G +D P + AL
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 262
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
I +++ G H++ L G+++ WG FG++G GN+ Q P Q+ Q
Sbjct: 263 SNSFISQIS---GGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 319
Query: 149 VDV 151
V V
Sbjct: 320 VQV 322
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 31 VPSKVDSFTGA--QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P K+++ + + Q+ G T L +G + G +G++G G++ D +P +
Sbjct: 255 IPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 314
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEAL 143
+++V SCG H+L + E VF+WG G G+LG G S + P+ IEAL
Sbjct: 315 DDQKVVQV--SCGWR-HTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 105 HSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVAC 164
HS+ L V SWG G+ G+LGHG+++ + P Q+ AL G V V D VA
Sbjct: 15 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV---TCGADHTVAY 71
Query: 165 IREGM----------ARI---------IPVPLLSLMTSSHLEQLVCGEPH 195
+ GM R+ P+P+ +L ++Q+ CG+ H
Sbjct: 72 SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH-GIRIKQIACGDSH 120
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 28 CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA 87
CSPV + QV CG T + +V + G G+ G+LG G S D + P II A
Sbjct: 306 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA 365
Query: 88 L 88
L
Sbjct: 366 L 366
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 30 PVPSKVDSFTGAQ--QVVCGQNCTFVLQVNG-SVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P P+++ + G Q V CG + T +G V S G G +GRLG G+S DL TP I
Sbjct: 45 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK 104
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
AL G I ++A CG D H L + GEV SWG G+LG G+++ P++I+A +G
Sbjct: 105 ALHGIRIKQIA--CG-DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 160
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Query: 60 VLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESG-EVFSW 118
V S G G G+LG G ++D +P+ +SAL G I+ V +CG+D H++ ++SG EV+SW
Sbjct: 25 VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV--TCGAD-HTVAYSQSGMEVYSW 81
Query: 119 GDGDFGKLGHGNSDRQRRPRQIEALQG 145
G GDFG+LGHGNS P I+AL G
Sbjct: 82 GWGDFGRLGHGNSSDLFTPLPIKALHG 108
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P+P K +Q+ CG + + + G V S G G+LG G ++D P I A
Sbjct: 99 TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 158
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
G I VA G++ H+ + E G+++ WG G +G LG G+ + P ++ + G+
Sbjct: 159 EGIRIKMVA--AGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 213
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 31 VPSKVDSFTGAQQ--VVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
VP +V S G + V CG T + +G++ + G YG+LG G +D P + AL
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEAL 262
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
I +++ G H++ L G+++ WG FG++G GN+ Q P Q+ Q
Sbjct: 263 SNSFISQIS---GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKV 319
Query: 149 VDV 151
V V
Sbjct: 320 VQV 322
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 31 VPSKVDSFTGA--QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+P K+++ + + Q+ G T L +G + G +G++G G++ D +P +
Sbjct: 255 IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 314
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEAL 143
+++V SCG H+L + E VF+WG G G+LG G S + P+ IEAL
Sbjct: 315 DDQKVVQV--SCGWR-HTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEAL 366
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 105 HSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVAC 164
HS+ L V SWG G+ G+LGHG+++ + P Q+ AL G V V D VA
Sbjct: 15 HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSV---TCGADHTVAY 71
Query: 165 IREGM----------ARI---------IPVPLLSLMTSSHLEQLVCGEPH 195
+ GM R+ P+P+ +L ++Q+ CG+ H
Sbjct: 72 SQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALH-GIRIKQIACGDSH 120
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 28 CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA 87
CSPV + QV CG T + +V + G G+ G+LG G S D + P II A
Sbjct: 306 CSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEA 365
Query: 88 L 88
L
Sbjct: 366 L 366
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 115 VFSWGDGDFGKLGHGNSDRQRRPRQIEALQG--QHAVDVHYRLHEMDTA---VACIREGM 169
FS D FG++ D + R IE G + V+++ + +D +G
Sbjct: 230 TFSADDERFGEVV--TVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGF 287
Query: 170 ARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSH 229
+IP L+++ LE L+ G I + K+ YR E+ +++W W+ + + +
Sbjct: 288 NELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWFWKCVSEWDN 347
Query: 230 NERVLFMRFVSGRSRLPAN-LADLS-----QRFQVMKVDRCIDGLPTAQTCFFQLRLPNY 283
+R ++F +G SR+P N DL +RF + K + LP + TCF ++ LP Y
Sbjct: 348 EQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGE-VQQLPKSHTCFNRVDLPQY 406
Query: 284 SSKEVMAEKLRYAINNC 300
+ M +KL A+
Sbjct: 407 VDYDSMKQKLTLAVEET 423
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 167 EGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDENHILVRWMWEVLD 225
EG ++P+ L+ + + LE L CG + ++ +Q Y++ NH +++W W+ +
Sbjct: 254 EGFTELLPIDLIKIFDENELELLXCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVL 313
Query: 226 SFSHNERVLFMRFVSGRSRLPAN-LADL--SQRFQVMKVDR--CIDGLPTAQTCFFQLRL 280
+R+ ++FV+G SR+P N A+L S Q+ +++ + LP A TCF +L L
Sbjct: 314 LXDAEKRIRLLQFVTGTSRVPXNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTCFNRLDL 373
Query: 281 PNYSSKEVMAEKLRYAINN 299
P Y + E + EKL A+ N
Sbjct: 374 PPYETFEDLREKLLXAVEN 392
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 167 EGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDS 226
+G ++P+ L LE ++CG + L+ ++ YR N + W W+ +
Sbjct: 235 DGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKE 294
Query: 227 FSHNERVLFMRFVSGRSRLP-ANLADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRL 280
+ R+ ++FV+G RLP A+L Q+F + KV + LP + TCF +L L
Sbjct: 295 TDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDT-WLPRSHTCFNRLDL 353
Query: 281 PNYSSKEVMAEKLRYAINNCK 301
P Y S E + EKL +AI +
Sbjct: 354 PPYKSYEQLKEKLLFAIEETE 374
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 167 EGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDENHILVRWMWEVLD 225
EG ++P+ L+ + + LE L+CG + ++ +Q Y++ NH +++W W+ +
Sbjct: 239 EGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVL 298
Query: 226 SFSHNERVLFMRFVSGRSRLPAN-LADL--SQRFQVMKVDR--CIDGLPTAQTCFFQLRL 280
+R+ ++FV+G SR+P N A+L S Q+ +++ + LP A T F +L L
Sbjct: 299 LMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTAFNRLDL 358
Query: 281 PNYSSKEVMAEKLRYAINNCKSID 304
P Y + E + EKL A+ N + +
Sbjct: 359 PPYETFEDLREKLLMAVENAQGFE 382
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 167 EGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDENHILVRWMWEVLD 225
EG ++P+ L+ + + LE L+CG + ++ +Q Y++ NH +++W W+ +
Sbjct: 239 EGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVL 298
Query: 226 SFSHNERVLFMRFVSGRSRLPAN-LADL--SQRFQVMKVDR--CIDGLPTAQTCFFQLRL 280
+R+ ++FV+G SR+P N A+L S Q+ +++ + LP A T F +L L
Sbjct: 299 LMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGSPEKLPRAHTSFNRLDL 358
Query: 281 PNYSSKEVMAEKLRYAINNCKSID 304
P Y + E + EKL A+ N + +
Sbjct: 359 PPYETFEDLREKLLMAVENAQGFE 382
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 218 RWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMK--VDRCIDG--LPTAQT 273
RW W +++ S ER + F + LPA+ + FQ M R D LPTA T
Sbjct: 31 RWFWSIVEKMSMTERQDLVYFWTSSPSLPAS----EEGFQPMPSITIRPPDDQHLPTANT 86
Query: 274 CFFQLRLPNYSSKEVMAEKLRYAINN 299
C +L +P YSSK+++ +KL AI
Sbjct: 87 CISRLYVPLYSSKQILKQKLLLAIKT 112
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 47 GQNCTFVLQVNGSVLSCGEGSYGRLGQGH-SDDLHTPSIISALLGFIIIKVATSCGSDGH 105
GQ+ T + G S G YGRLG G +++ P++IS L + S G
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVG---- 349
Query: 106 SLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144
+ + G VF+WG G +LG G + P ++ Q
Sbjct: 350 -YAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 387
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 42 QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCG 101
Q CG TF + G V G +Y +LG ++ P +++ V S G
Sbjct: 235 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 294
Query: 102 SDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQR 135
H++ + G+ +S G ++G+LG G ++
Sbjct: 295 QH-HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEK 327
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 12 VNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRL 71
+ + Y + G +P+ + V CG + + + +G V + G G+ +L
Sbjct: 310 LGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQL 369
Query: 72 GQGHSDDLHTP 82
G G +D +P
Sbjct: 370 GTGQDEDAWSP 380
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 58 GSVLSCGEGSYGRLGQGHSD-DLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVF 116
G VL+ G+G G+LG G + + P+++S I V + H++ L++SG+V+
Sbjct: 27 GLVLTLGQGDVGQLGLGENVMERKKPALVS-----IPEDVVQAEAGGMHTVCLSKSGQVY 81
Query: 117 SWGDGDFGKLGHGNS 131
S+G D G LG S
Sbjct: 82 SFGCNDEGALGRDTS 96
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDL-HTPSIISA 87
+P+ +++ + + GQ+ T +L + G YGRLG G D+ P+I+
Sbjct: 287 TPIKTELKDI---RHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK 343
Query: 88 LLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQI--EALQG 145
L I V+ CG + S + G+++SWG G +LG G+ D + P + + QG
Sbjct: 344 LTEKI---VSVGCG-EVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQG 399
Query: 146 QH 147
+H
Sbjct: 400 KH 401
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 56 VNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEV 115
V G+VL CG G G+LG G +D+ +S + G I V S G H+L L +SG++
Sbjct: 41 VLGNVLVCGNGDVGQLGLG--EDILERKRLSPVAG-IPDAVDISAGGM-HNLVLTKSGDI 96
Query: 116 FSWGDGDFGKLGHGNSD 132
+S+G D G LG S+
Sbjct: 97 YSFGCNDEGALGRDTSE 113
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 33 SKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD--LHTPSIISALLG 90
S V A + G VL +G + S G G LG+ S+D P +I
Sbjct: 69 SPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGK 128
Query: 91 FIIIKVATSCGSDGHSLGLAESGEVFSWG 119
+ I D HS L E G VF+WG
Sbjct: 129 ALCISAG-----DSHSACLLEDGRVFAWG 152
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 31 VPSKVDSFTGAQQ----VVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGH-SDDLHTPSII 85
+P + SF + + GQ+ T + G S G YGRLG G +++ P++I
Sbjct: 263 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLI 322
Query: 86 SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144
S L + S G + + G VF+WG G +LG G + P ++ Q
Sbjct: 323 SRLPAVSSVACGASVG-----YAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 376
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 42 QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCG 101
Q CG TF + G V G +Y +LG ++ P +++ V S G
Sbjct: 224 QDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG 283
Query: 102 SDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQR 135
H++ + G+ +S G ++G+LG G ++
Sbjct: 284 QH-HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEK 316
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 12 VNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRL 71
+ + Y + G +P+ + V CG + + + +G V + G G+ +L
Sbjct: 299 LGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQL 358
Query: 72 GQGHSDDLHTP 82
G G +D +P
Sbjct: 359 GTGQDEDAWSP 369
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 58 GSVLSCGEGSYGRLGQGHSD-DLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVF 116
G VL+ G+G G+LG G + + P+++S I V + H++ L++SG+V+
Sbjct: 16 GLVLTLGQGDVGQLGLGENVMERKKPALVS-----IPEDVVQAEAGGMHTVCLSKSGQVY 70
Query: 117 SWGDGDFGKLGHGNS 131
S+G D G LG S
Sbjct: 71 SFGCNDEGALGRDTS 85
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 43 QVVCGQNCTFVLQVNGSVLS-----CGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVA 97
Q+ N + L NG V + C EG G Q TP + + I+++A
Sbjct: 152 QLAATDNMSCALFSNGEVYAWGTFRCNEGILG-FYQDKIKIQKTPWKVPTFSKYNIVQLA 210
Query: 98 TSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQR 135
G D H L L E G VF+WG+G +LG +R R
Sbjct: 211 P--GKD-HILFLDEEGMVFAWGNGQQNQLGRKVMERFR 245
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 26 VNCSPVPSKVDSFTGAQ--QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPS 83
+ P KV +F+ Q+ G++ L G V + G G +LG+ + +
Sbjct: 189 IKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKT 248
Query: 84 IISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLG 127
+ G +K S + H L + ++ SWG FG+ G
Sbjct: 249 LDPRPFGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCG 290
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 105 HSLGLAESGEVFSWGDGDFGKLGHGNSDRQRR 136
H+L L E V+SWG D G LG S+ + +
Sbjct: 78 HTLALDEESNVWSWGCNDVGALGRDTSNAKEQ 109
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 42 QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD-------DLHTPSIISALLGFI-- 92
+ + G++ + +L +G + SCG +G + D+H + L +
Sbjct: 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375
Query: 93 IIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGN-SDRQRRPRQIE 141
+ K + HS+ +A++G +SWG G+ +G G D P +I+
Sbjct: 376 VPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIK 425
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|B Chain B, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|C Chain C, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
pdb|3FK2|D Chain D, Crystal Structure Of The Rhogap Domain Of Human
Glucocorticoid Receptor Dna-Binding Factor 1
Length = 246
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 139 QIEALQGQHAVDVHYRLHEMDTAVACIREGMARI---IPVPLLSL-MTSSHLEQLVCGEP 194
++E+LQ Q D + L E D V + M +P PL+ M +E +
Sbjct: 98 EMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDR 157
Query: 195 HISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFM 236
L LK++++ + ENH + +++ L+ SHN +V M
Sbjct: 158 EQKLHALKEVLK-KFPKENHEVFKYVISHLNKVSHNNKVNLM 198
>pdb|2Q08|A Chain A, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|B Chain B, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|C Chain C, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|D Chain D, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|E Chain E, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|F Chain F, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|G Chain G, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|H Chain H, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|I Chain I, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|J Chain J, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|K Chain K, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q08|L Chain L, Crystal Structure Of The Protein Bh0493 From Bacillus
Halodurans C-125 Complexed With Zn
pdb|2Q6E|A Chain A, Crystal Structure Of Glucuronate Isomerase From Bacillus
Halodurans Complexed With Zn
pdb|2Q6E|B Chain B, Crystal Structure Of Glucuronate Isomerase From Bacillus
Halodurans Complexed With Zn
pdb|2Q6E|C Chain C, Crystal Structure Of Glucuronate Isomerase From Bacillus
Halodurans Complexed With Zn
pdb|3HK5|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate
pdb|3HK5|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate
pdb|3HK7|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|C Chain C, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|D Chain D, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|E Chain E, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|F Chain F, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|G Chain G, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|H Chain H, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|I Chain I, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|J Chain J, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|K Chain K, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK7|L Chain L, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinarate,
Monoclinic Crystal Form
pdb|3HK8|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinohydroxamate
pdb|3HK8|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Arabinohydroxamate
pdb|3HK9|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|C Chain C, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|D Chain D, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|E Chain E, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|F Chain F, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|G Chain G, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|H Chain H, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|I Chain I, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|J Chain J, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|K Chain K, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HK9|L Chain L, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Glucuronate
pdb|3HKA|A Chain A, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Fructuronate
pdb|3HKA|B Chain B, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Fructuronate
pdb|3HKA|C Chain C, Crystal Structure Of Uronate Isomerase From Bacillus
Halodurans Complexed With Zinc And D-Fructuronate
Length = 427
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 284 SSKEVMAEKLRYAINNCKSIDMDNYMLARN 313
+S+EV+AEK++ A+NN DM ++ + N
Sbjct: 4 NSREVLAEKVKNAVNNQPVTDMHTHLFSPN 33
>pdb|2QEE|A Chain A, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|B Chain B, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|C Chain C, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|D Chain D, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|E Chain E, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|F Chain F, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|G Chain G, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|H Chain H, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|I Chain I, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|J Chain J, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|K Chain K, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
pdb|2QEE|L Chain L, Crystal Structure Of Putative Amidohydrolase Bh0493 From
Bacillus Halodurans C-125
Length = 437
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 284 SSKEVMAEKLRYAINNCKSIDMDNYMLARN 313
+S+EV+AEK++ A+NN DM ++ + N
Sbjct: 6 NSREVLAEKVKNAVNNQPVTDMHTHLFSPN 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,423,569
Number of Sequences: 62578
Number of extensions: 385502
Number of successful extensions: 826
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 74
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)