Query psy15273
Match_columns 324
No_of_seqs 341 out of 2513
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 16:51:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00119 HECTc Domain Homolo 100.0 1.3E-40 2.8E-45 308.5 7.1 160 146-305 173-335 (336)
2 COG5021 HUL4 Ubiquitin-protein 100.0 4E-40 8.8E-45 329.2 5.5 161 145-305 703-871 (872)
3 cd00078 HECTc HECT domain; C-t 100.0 9.6E-40 2.1E-44 305.5 7.1 163 142-304 187-352 (352)
4 PF00632 HECT: HECT-domain (ub 100.0 6.4E-38 1.4E-42 289.8 2.0 164 143-306 148-317 (317)
5 KOG0942|consensus 100.0 3.6E-36 7.8E-41 292.4 6.6 157 150-306 841-1001(1001)
6 KOG0941|consensus 100.0 3.1E-36 6.6E-41 291.9 5.7 168 137-305 680-849 (850)
7 KOG0939|consensus 100.0 3.8E-35 8.3E-40 279.0 4.4 155 151-305 557-719 (720)
8 KOG0170|consensus 100.0 3.4E-34 7.3E-39 263.6 4.2 171 135-305 440-620 (621)
9 KOG4427|consensus 100.0 3.8E-32 8.3E-37 259.0 4.7 164 143-306 900-1096(1096)
10 KOG1427|consensus 99.9 3.5E-24 7.6E-29 186.8 5.7 182 11-196 74-340 (443)
11 KOG1427|consensus 99.9 3.9E-24 8.4E-29 186.6 5.4 174 30-208 45-251 (443)
12 COG5184 ATS1 Alpha-tubulin sup 99.9 1.2E-21 2.5E-26 181.3 10.0 206 8-228 189-425 (476)
13 KOG0940|consensus 99.8 1E-20 2.3E-25 174.0 6.7 141 157-298 212-358 (358)
14 KOG0943|consensus 99.8 2.8E-20 6.2E-25 184.2 8.4 145 159-304 2864-3013(3015)
15 COG5184 ATS1 Alpha-tubulin sup 99.8 1.8E-19 3.9E-24 166.9 9.9 159 10-173 246-424 (476)
16 KOG0783|consensus 99.7 4.7E-18 1E-22 164.9 3.9 152 13-167 141-310 (1267)
17 KOG1428|consensus 99.5 1.7E-14 3.7E-19 145.6 9.6 132 32-166 604-844 (3738)
18 KOG1428|consensus 99.5 5.5E-14 1.2E-18 142.0 10.4 100 41-143 769-871 (3738)
19 KOG0783|consensus 99.5 1.6E-13 3.4E-18 133.9 8.3 125 12-141 194-331 (1267)
20 PF00415 RCC1: Regulator of ch 99.4 9.6E-14 2.1E-18 92.8 4.6 50 57-109 1-51 (51)
21 PF13540 RCC1_2: Regulator of 99.4 8.1E-13 1.8E-17 77.7 4.2 30 41-70 1-30 (30)
22 KOG0941|consensus 99.2 7.8E-13 1.7E-17 129.9 -5.4 136 31-169 4-154 (850)
23 PF13540 RCC1_2: Regulator of 99.1 9.7E-11 2.1E-15 68.8 3.7 30 93-125 1-30 (30)
24 PF00415 RCC1: Regulator of ch 98.8 4.1E-09 8.8E-14 70.1 3.1 44 112-155 1-45 (51)
25 PF07569 Hira: TUP1-like enhan 77.9 15 0.00032 32.1 8.3 76 39-120 13-94 (219)
26 smart00706 TECPR Beta propelle 71.7 5.9 0.00013 23.4 3.0 24 39-62 8-32 (35)
27 KOG1034|consensus 54.4 32 0.00069 31.8 5.6 57 55-120 326-382 (385)
28 PF06739 SBBP: Beta-propeller 50.6 17 0.00037 22.1 2.3 18 50-67 16-33 (38)
29 KOG0943|consensus 46.1 16 0.00035 39.5 2.7 77 41-120 376-455 (3015)
30 PF07569 Hira: TUP1-like enhan 43.9 25 0.00054 30.6 3.2 29 90-121 12-40 (219)
31 KOG3669|consensus 43.2 1.1E+02 0.0024 30.6 7.6 71 39-118 227-299 (705)
32 PF03785 Peptidase_C25_C: Pept 43.1 46 0.00099 24.1 3.8 42 31-72 8-50 (81)
33 PLN02772 guanylate kinase 41.3 62 0.0013 31.0 5.6 62 50-122 28-96 (398)
34 KOG0315|consensus 37.1 2.9E+02 0.0064 24.8 8.6 54 11-67 143-198 (311)
35 PF01436 NHL: NHL repeat; Int 36.0 68 0.0015 17.7 3.2 17 50-66 5-21 (28)
36 PF13418 Kelch_4: Galactose ox 32.2 48 0.001 20.7 2.4 18 48-65 3-20 (49)
37 PF02239 Cytochrom_D1: Cytochr 27.2 2.1E+02 0.0046 27.0 6.8 72 41-127 29-103 (369)
38 PF14569 zf-UDP: Zinc-binding 26.6 17 0.00037 26.0 -0.5 31 82-119 1-31 (80)
39 PF07312 DUF1459: Protein of u 23.9 49 0.0011 23.7 1.4 12 58-69 56-68 (84)
40 KOG0289|consensus 23.9 4.2E+02 0.0091 25.7 7.8 67 49-120 350-418 (506)
41 KOG4441|consensus 23.4 5.8E+02 0.013 25.7 9.4 107 5-120 419-530 (571)
42 PHA02681 ORF089 virion membran 21.6 31 0.00067 24.9 0.0 19 226-244 51-69 (92)
43 PF00167 FGF: Fibroblast growt 20.2 3.9E+02 0.0084 20.5 6.1 64 42-118 3-66 (122)
No 1
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=1.3e-40 Score=308.47 Aligned_cols=160 Identities=42% Similarity=0.746 Sum_probs=148.1
Q ss_pred ceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeec-CCCCCCHHHHHHHHH
Q psy15273 146 QHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR-DLDENHILVRWMWEV 223 (324)
Q Consensus 146 ~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~-g~~~~~~~i~~fw~~ 223 (324)
+.-..+.+.+ +++..|+.+|++||..++|...+.+|++.|+++++||..+||+++|++++.|. ||+.+++.|+|||++
T Consensus 173 Yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~v 252 (336)
T smart00119 173 YVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEV 252 (336)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHH
Confidence 3334455666 57899999999999999999999999999999999999999999999999998 799999999999999
Q ss_pred HhcCCHHHHhheeeeecCCCCCCCCC-cCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhCcc
Q psy15273 224 LDSFSHNERVLFMRFVSGRSRLPANL-ADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKS 302 (324)
Q Consensus 224 ~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~~ 302 (324)
+++|++++|++||+|+||++|+|++| ..+.++|+|.+.+.++++||+||||||+|+||+|+|+|+|++||++||++|++
T Consensus 253 l~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~~g 332 (336)
T smart00119 253 VESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKG 332 (336)
T ss_pred HHHCCHHHHHHhheeccCCCCCCCCchhhcCCceEEEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999965 56678999998877889999999999999999999999999999999999999
Q ss_pred ccc
Q psy15273 303 IDM 305 (324)
Q Consensus 303 ~~~ 305 (324)
|++
T Consensus 333 F~l 335 (336)
T smart00119 333 FGL 335 (336)
T ss_pred CCC
Confidence 986
No 2
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-40 Score=329.19 Aligned_cols=161 Identities=34% Similarity=0.629 Sum_probs=150.2
Q ss_pred cceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCc-cchhhhhcceeecCCCCCCHHHHHHHH
Q psy15273 145 GQHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPH-ISLSLLKQIVRYRDLDENHILVRWMWE 222 (324)
Q Consensus 145 ~~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~-i~v~~l~~~~~y~g~~~~~~~i~~fw~ 222 (324)
.+....+.|.+ .++..|+.||..||.+++|+.++.+|++.||+.++||.++ ||+++||.+|.|.||+.++++|.|||+
T Consensus 703 eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~s~~I~wFWe 782 (872)
T COG5021 703 EYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWE 782 (872)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccccccccCCcHHHHHHH
Confidence 33444566777 4899999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhcCCHHHHhheeeeecCCCCCCC-CCcCCCc-----ceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHH
Q psy15273 223 VLDSFSHNERVLFMRFVSGRSRLPA-NLADLSQ-----RFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYA 296 (324)
Q Consensus 223 ~~~~ls~~~~~~fL~F~TG~~~lP~-~~~~~~~-----~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~A 296 (324)
++++|+.++|++||||+||++|+|+ |++.+.+ +|+|.+...++++||+||||||+|+||+|+|+|+|++||.+|
T Consensus 783 ii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~A 862 (872)
T COG5021 783 IISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTA 862 (872)
T ss_pred HHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999 4566655 899999988999999999999999999999999999999999
Q ss_pred HHhCccccc
Q psy15273 297 INNCKSIDM 305 (324)
Q Consensus 297 i~~~~~~~~ 305 (324)
|++|.||++
T Consensus 863 I~Eg~GFg~ 871 (872)
T COG5021 863 INEGAGFGL 871 (872)
T ss_pred HHhccCcCc
Confidence 999999986
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=9.6e-40 Score=305.48 Aligned_cols=163 Identities=42% Similarity=0.732 Sum_probs=148.2
Q ss_pred ccccceeeeeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCC-CCCCHHHHH
Q psy15273 142 ALQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDL-DENHILVRW 219 (324)
Q Consensus 142 ~l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~-~~~~~~i~~ 219 (324)
+...+.-..+.+.++ ++..|+.+|++||..++|...+.+|+++|++.++||...+|+++|++++.|.++ +.+++.|+|
T Consensus 187 N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~~~~~~i~~ 266 (352)
T cd00078 187 NKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYSSDSPTIQW 266 (352)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCCCCCHHHHH
Confidence 333444445556665 789999999999999999999999999999999999999999999999999975 559999999
Q ss_pred HHHHHhcCCHHHHhheeeeecCCCCCCCCC-cCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHH
Q psy15273 220 MWEVLDSFSHNERVLFMRFVSGRSRLPANL-ADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAIN 298 (324)
Q Consensus 220 fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~ 298 (324)
||+++++|++++|++||+|+||++|+|++| ..+.++|+|.+.+.++++||+||||||+|+||+|+|+|+|++||++||+
T Consensus 267 Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~ 346 (352)
T cd00078 267 FWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAIN 346 (352)
T ss_pred HHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCCCCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999964 5677899999887779999999999999999999999999999999999
Q ss_pred hCcccc
Q psy15273 299 NCKSID 304 (324)
Q Consensus 299 ~~~~~~ 304 (324)
+|+||+
T Consensus 347 ~~~gF~ 352 (352)
T cd00078 347 EGAGFG 352 (352)
T ss_pred cCCCCC
Confidence 999996
No 4
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=6.4e-38 Score=289.78 Aligned_cols=164 Identities=40% Similarity=0.732 Sum_probs=134.5
Q ss_pred cccceeeeeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCc-cchhhhhcceeec-CCCCCCHHHHH
Q psy15273 143 LQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPH-ISLSLLKQIVRYR-DLDENHILVRW 219 (324)
Q Consensus 143 l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~-i~v~~l~~~~~y~-g~~~~~~~i~~ 219 (324)
...+.-..+.+.++ .+..++.+|++||..++|...+.+|++++++.++||..+ +|+++|++++.|. |++.+++.++|
T Consensus 148 ~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~ 227 (317)
T PF00632_consen 148 KEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQW 227 (317)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHH
T ss_pred hhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeE
Confidence 33333334455554 589999999999999999999999999999999999999 9999999999999 79999999999
Q ss_pred HHHHHhcCCHHHHhheeeeecCCCCCCCCC-cCCCcceEEeeeCC-CCCCCceeccccceeecCCCCCHHHHHHHHHHHH
Q psy15273 220 MWEVLDSFSHNERVLFMRFVSGRSRLPANL-ADLSQRFQVMKVDR-CIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAI 297 (324)
Q Consensus 220 fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~~~~~~i~~~~~-~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai 297 (324)
||+++++|++++|++||+|+||++|+|++| ..+.++|+|.+.+. ++++||+||||||+|+||.|+|+|+|++||++||
T Consensus 228 fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai 307 (317)
T PF00632_consen 228 FWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQFSDDSPDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAI 307 (317)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEEEESC-STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHH
T ss_pred EeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEeecCCCccccCceecCcCCEEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999965 45668999998876 4789999999999999999999999999999999
Q ss_pred HhC-cccccc
Q psy15273 298 NNC-KSIDMD 306 (324)
Q Consensus 298 ~~~-~~~~~d 306 (324)
++| .||+++
T Consensus 308 ~~~~~gF~~s 317 (317)
T PF00632_consen 308 ENGQEGFGLS 317 (317)
T ss_dssp HHT-------
T ss_pred HcCCCCcCcC
Confidence 999 899874
No 5
>KOG0942|consensus
Probab=100.00 E-value=3.6e-36 Score=292.37 Aligned_cols=157 Identities=31% Similarity=0.573 Sum_probs=148.8
Q ss_pred eeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCc-cchhhhhcceeec-CCCCCCHHHHHHHHHHhc
Q psy15273 150 DVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPH-ISLSLLKQIVRYR-DLDENHILVRWMWEVLDS 226 (324)
Q Consensus 150 ~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~-i~v~~l~~~~~y~-g~~~~~~~i~~fw~~~~~ 226 (324)
..+|.++ .+..++.||++|+..+++++++.+|.+.||+.++.|... ||++|||++|.|. ||++++++|.+||+|+++
T Consensus 841 VsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~ 920 (1001)
T KOG0942|consen 841 VSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEE 920 (1001)
T ss_pred hhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHh
Confidence 3457774 789999999999999999999999999999999999965 8999999999996 599999999999999999
Q ss_pred CCHHHHhheeeeecCCCCCCC-CCcCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhCccccc
Q psy15273 227 FSHNERVLFMRFVSGRSRLPA-NLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDM 305 (324)
Q Consensus 227 ls~~~~~~fL~F~TG~~~lP~-~~~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~~~~~ 305 (324)
|+.|+|++||+||||++|.|+ |++.+-|+|+|...+.+.++||+|+||.|.|+||+|++++.||+||++||+.+.|||+
T Consensus 921 F~~edKr~fLKFVTscsRpPllGFK~L~P~FcI~n~gsd~~RLPTASTCmNLLKLP~y~~kt~LreKLlYAI~sgAGFeL 1000 (1001)
T KOG0942|consen 921 FSDEDKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAGSDDDRLPTASTCMNLLKLPPYSNKTLLREKLLYAINSGAGFEL 1000 (1001)
T ss_pred cchHHHHHHHHHHhcCCCcccccchhcCccceeeeCCCccccCCcHHHHHHHhcCCCcccHHHHHHHHHHHHhcccCCCC
Confidence 999999999999999999999 8889999999998888999999999999999999999999999999999999999998
Q ss_pred c
Q psy15273 306 D 306 (324)
Q Consensus 306 d 306 (324)
.
T Consensus 1001 S 1001 (1001)
T KOG0942|consen 1001 S 1001 (1001)
T ss_pred C
Confidence 4
No 6
>KOG0941|consensus
Probab=100.00 E-value=3.1e-36 Score=291.88 Aligned_cols=168 Identities=29% Similarity=0.544 Sum_probs=152.1
Q ss_pred cccccccccceeeeeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecC-CCCCC
Q psy15273 137 PRQIEALQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDENH 214 (324)
Q Consensus 137 P~~V~~l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g-~~~~~ 214 (324)
|..-++-....-.++.+.++ ++..|..+|++||..++..+.+.+|.|+||+.++||+.++|++.+++.+.|.| |+.++
T Consensus 680 ~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~~ 759 (850)
T KOG0941|consen 680 PVTNENRREFVNLYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSDS 759 (850)
T ss_pred ccccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCCC
Confidence 33333444555667788874 89999999999999999999999999999999999999999999999999996 89999
Q ss_pred HHHHHHHHHHhcCCHHHHhheeeeecCCCCCCCCCcCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHH
Q psy15273 215 ILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLR 294 (324)
Q Consensus 215 ~~i~~fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~ 294 (324)
++|+|||++++.|+.++|++||+|+|||+|+|++|.+ ..++.|.+.+++.++||+||||||.|.||+|+|+|.|++||+
T Consensus 760 ~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~-~l~~~i~~~~~~~~~lP~shTCfN~L~Lp~YsskekL~~kL~ 838 (850)
T KOG0941|consen 760 PTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLA-KLKLVIQKNGPDEDRLPVSHTCFNVLLLPEYSSKEKLEEKLL 838 (850)
T ss_pred hHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChh-hceEEEecCCCCcccCcchhhhhhhhhccccCcHHHHHHHHH
Confidence 9999999999999999999999999999999997743 236788888888899999999999999999999999999999
Q ss_pred HHHHhCccccc
Q psy15273 295 YAINNCKSIDM 305 (324)
Q Consensus 295 ~Ai~~~~~~~~ 305 (324)
.||++.+||++
T Consensus 839 ~Ai~~~~GF~l 849 (850)
T KOG0941|consen 839 TAINNTEGFGL 849 (850)
T ss_pred HHHHhccCcCC
Confidence 99999999986
No 7
>KOG0939|consensus
Probab=100.00 E-value=3.8e-35 Score=278.97 Aligned_cols=155 Identities=36% Similarity=0.627 Sum_probs=144.1
Q ss_pred eeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHHHHHHHHHhcCCH
Q psy15273 151 VHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSH 229 (324)
Q Consensus 151 v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i~~fw~~~~~ls~ 229 (324)
..+++ +++..|+.||..||+.++|..++.+|+..|++.++||.++||+++|+.++.|.+|...+++|+|||+++++|++
T Consensus 557 ~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~~~~i~wFWrav~sf~~ 636 (720)
T KOG0939|consen 557 TQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTKASSVIQWFWRAVRSFDQ 636 (720)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhcccccchHHHHHHHHHhhhcH
Confidence 34666 68899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhheeeeecCCCCCCCCC-cCC-----CcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhCc-c
Q psy15273 230 NERVLFMRFVSGRSRLPANL-ADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK-S 302 (324)
Q Consensus 230 ~~~~~fL~F~TG~~~lP~~~-~~~-----~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~-~ 302 (324)
++|.+||||+||++++|.+| ..+ .++|+|++.+...++||+||||||+|.||.|.|+|.++++|..||.+|. |
T Consensus 637 eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~LllAi~E~seg 716 (720)
T KOG0939|consen 637 EERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESLLLAINEGSEG 716 (720)
T ss_pred HHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999954 333 4589999988889999999999999999999999999999999999965 7
Q ss_pred ccc
Q psy15273 303 IDM 305 (324)
Q Consensus 303 ~~~ 305 (324)
|++
T Consensus 717 fg~ 719 (720)
T KOG0939|consen 717 FGM 719 (720)
T ss_pred cCc
Confidence 775
No 8
>KOG0170|consensus
Probab=100.00 E-value=3.4e-34 Score=263.63 Aligned_cols=171 Identities=27% Similarity=0.496 Sum_probs=149.7
Q ss_pred cccccccccccceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCc-cchhhhhcceeec-CCC
Q psy15273 135 RRPRQIEALQGQHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPH-ISLSLLKQIVRYR-DLD 211 (324)
Q Consensus 135 ~~P~~V~~l~~~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~-i~v~~l~~~~~y~-g~~ 211 (324)
..|+.+.++.++.-..|.+-+ ..+.+|+.||+.||++|+|-..+..|.++|+..+.||..+ |+++.|..+..++ ||+
T Consensus 440 ~~~V~~~NleEYi~~VId~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT 519 (621)
T KOG0170|consen 440 NKPVTISNLEEYIHGVIDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYT 519 (621)
T ss_pred CCccccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCcc
Confidence 345556666555444444444 4789999999999999999999999999999999999865 8889999998887 899
Q ss_pred CCCHHHHHHHHHHhcCCHHHHhheeeeecCCCCCCCC-CcCCCcceEEeeeC-----CCCCCCceeccccceeecCCCCC
Q psy15273 212 ENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLSQRFQVMKVD-----RCIDGLPTAQTCFFQLRLPNYSS 285 (324)
Q Consensus 212 ~~~~~i~~fw~~~~~ls~~~~~~fL~F~TG~~~lP~~-~~~~~~~~~i~~~~-----~~~~~LP~a~TCf~~L~LP~Y~s 285 (324)
.+++.|+.+.+++++|+.+|||.||||+|||+|||+| ++.+.|+++|++.- .+++.||+++||-|+|+||+|+|
T Consensus 520 ~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSS 599 (621)
T KOG0170|consen 520 MDSPIIHDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSS 599 (621)
T ss_pred CCCcHHHHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCch
Confidence 9999999999999999999999999999999999996 47899999998643 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHhCc-cccc
Q psy15273 286 KEVMAEKLRYAINNCK-SIDM 305 (324)
Q Consensus 286 ~~~l~~kL~~Ai~~~~-~~~~ 305 (324)
+|+|++||.+||++++ +|.|
T Consensus 600 kEiM~~kL~~Ai~EGqgSFhL 620 (621)
T KOG0170|consen 600 KEIMRSKLLYAIEEGQGSFHL 620 (621)
T ss_pred HHHHHHHHHHHHHcccccccc
Confidence 9999999999999988 5665
No 9
>KOG4427|consensus
Probab=99.97 E-value=3.8e-32 Score=258.96 Aligned_cols=164 Identities=33% Similarity=0.641 Sum_probs=145.6
Q ss_pred cccceeeeeee----ecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCc-cchhhhhcceeecC-CCCCCH
Q psy15273 143 LQGQHAVDVHY----RLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPH-ISLSLLKQIVRYRD-LDENHI 215 (324)
Q Consensus 143 l~~~~iv~v~~----~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~-i~v~~l~~~~~y~g-~~~~~~ 215 (324)
....++.+|++ +++ .+..|..||-+||.+++.+.++++|++.|+++++.|..+ ||++||++|+.|-| +..+|+
T Consensus 900 tneNKi~YIH~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shr 979 (1096)
T KOG4427|consen 900 TNENKIQYIHAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHR 979 (1096)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcch
Confidence 34556666654 343 568899999999999999999999999999999999865 99999999999985 799999
Q ss_pred HHHHHHHHHhc-CCHHHHhheeeeecCCCCCCC-CCcCCCcceEEee--e----------------------CCCCCCCc
Q psy15273 216 LVRWMWEVLDS-FSHNERVLFMRFVSGRSRLPA-NLADLSQRFQVMK--V----------------------DRCIDGLP 269 (324)
Q Consensus 216 ~i~~fw~~~~~-ls~~~~~~fL~F~TG~~~lP~-~~~~~~~~~~i~~--~----------------------~~~~~~LP 269 (324)
+|+|||+++.. |++|||..||+|+|.|+|.|. |++-+.|+|.|.. + +.+..+||
T Consensus 980 vIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLP 1059 (1096)
T KOG4427|consen 980 VIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLP 1059 (1096)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCC
Confidence 99999999997 999999999999999999999 8888889998863 2 13456899
Q ss_pred eeccccceeecCCCCCHHHHHHHHHHHHHhCcccccc
Q psy15273 270 TAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMD 306 (324)
Q Consensus 270 ~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~~~~~d 306 (324)
+|+||||.|+||.|.-+..|||||+|||...+||+|+
T Consensus 1060 TaSTCfNlLKLPnY~kkStlreKLrYAIssntGFELS 1096 (1096)
T KOG4427|consen 1060 TASTCFNLLKLPNYKKKSTLREKLRYAISSNTGFELS 1096 (1096)
T ss_pred chhhHHHhhhCCCcchhHHHHHHHHHHhhcCCCcccC
Confidence 9999999999999999999999999999999999874
No 10
>KOG1427|consensus
Probab=99.89 E-value=3.5e-24 Score=186.85 Aligned_cols=182 Identities=26% Similarity=0.478 Sum_probs=141.6
Q ss_pred eecceeeeeeeecCCCCCC------CCceeecCCCC--ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCC----
Q psy15273 11 FVNKLSYKLISFHIGVNCS------PVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD---- 78 (324)
Q Consensus 11 ~~~~~~~~~~s~~~g~~~~------~~P~~v~~~~~--i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~---- 78 (324)
+.+++.|+||.+.-|+... ..|+.|..+.+ |++.|||++||++||++|+||+||.|++||||.++..+
T Consensus 74 ~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s 153 (443)
T KOG1427|consen 74 DMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVES 153 (443)
T ss_pred ecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccccccccccc
Confidence 3578899999887655333 77999999876 89999999999999999999999999999999987221
Q ss_pred --------------------------------------------------------------cccceeeecccCceeEEE
Q psy15273 79 --------------------------------------------------------------LHTPSIISALLGFIIIKV 96 (324)
Q Consensus 79 --------------------------------------------------------------~~~p~~i~~~~~~~i~~v 96 (324)
...|..|..+.++.|+++
T Consensus 154 ~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~ 233 (443)
T KOG1427|consen 154 TPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKV 233 (443)
T ss_pred CCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEE
Confidence 123455667788899999
Q ss_pred EeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccc--eeeeeee----ecc-cchhhHHHHhc--
Q psy15273 97 ATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ--HAVDVHY----RLH-EMDTAVACIRE-- 167 (324)
Q Consensus 97 ~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~--~iv~v~~----~l~-~i~~ql~a~~~-- 167 (324)
+ ||. +||+|++++++||+||-+.||.||+........|+.|+.+... --..+-+ .+. .--++++.|+.
T Consensus 234 a--cg~-nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k 310 (443)
T KOG1427|consen 234 A--CGT-NHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIK 310 (443)
T ss_pred e--ccC-cceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccc
Confidence 9 996 8999999999999999999999999999888899999865422 1122222 222 22466666654
Q ss_pred --CceeeecccccccccccccceEEeCCCcc
Q psy15273 168 --GMARIIPVPLLSLMTSSHLEQLVCGEPHI 196 (324)
Q Consensus 168 --Gf~~vip~~~l~~f~~~el~~l~cG~~~i 196 (324)
|-..+.|.+.. .+++.+|.-+-||+.|+
T Consensus 311 ~~ge~~mypkP~~-dlsgwnl~~~~~~~~h~ 340 (443)
T KOG1427|consen 311 NNGEDWMYPKPMM-DLSGWNLRWMDSGSMHH 340 (443)
T ss_pred cCcccccCCCchh-hcCCccCCCcCccceee
Confidence 45567777754 45788899999999884
No 11
>KOG1427|consensus
Probab=99.89 E-value=3.9e-24 Score=186.59 Aligned_cols=174 Identities=22% Similarity=0.458 Sum_probs=131.7
Q ss_pred CCceeecCCCC--ceEEEccC--CeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCc
Q psy15273 30 PVPSKVDSFTG--AQQVVCGQ--NCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGH 105 (324)
Q Consensus 30 ~~P~~v~~~~~--i~~i~~G~--~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~h 105 (324)
..|.++..+.. |+.|+.|. .|+++|+-+|+.|+||.|+.||||+++......|+.|+.|...+|++.+ ||. +|
T Consensus 45 ~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA--~Gr-nH 121 (443)
T KOG1427|consen 45 VSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAA--AGR-NH 121 (443)
T ss_pred ccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHh--hcc-Cc
Confidence 56888887765 78888775 5999999999999999999999999999999999999999999999998 997 79
Q ss_pred eeeeeecCceEEeecCCCCCcCCCCCCC-Ccccccccccccceeeeeeeecc-c----chhhHHHH--------hcCc--
Q psy15273 106 SLGLAESGEVFSWGDGDFGKLGHGNSDR-QRRPRQIEALQGQHAVDVHYRLH-E----MDTAVACI--------REGM-- 169 (324)
Q Consensus 106 s~~lt~~G~vy~wG~n~~GqLG~g~~~~-~~~P~~V~~l~~~~iv~v~~~l~-~----i~~ql~a~--------~~Gf-- 169 (324)
|++||++|+||+||.|.+||||.++... +..|.. .....-.+..|.|+.. + +...+..+ +.|-
T Consensus 122 Tl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~-~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~ 200 (443)
T KOG1427|consen 122 TLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPL-PCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDN 200 (443)
T ss_pred EEEEecCCcEEEecccccccccccccccccccCCC-ccccCccceeeccccceEEEeecccceeecCCccccccccCcch
Confidence 9999999999999999999999998744 333333 3345557777777631 1 12222222 2221
Q ss_pred ------------eeeeccc-ccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 170 ------------ARIIPVP-LLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 170 ------------~~vip~~-~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
++..|++ .+..++...|..++||..| ++..-+..-+|+
T Consensus 201 ~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nh-tvavd~nkrVys 251 (443)
T KOG1427|consen 201 EFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNH-TVAVDKNKRVYS 251 (443)
T ss_pred hhccccccceeeeecCCCccccccccceeeEEEeccCcc-eeeecCCccEEE
Confidence 2233444 4566788899999999999 554444445554
No 12
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.86 E-value=1.2e-21 Score=181.28 Aligned_cols=206 Identities=24% Similarity=0.419 Sum_probs=148.2
Q ss_pred eeeeecceeeeeeeecCCC----------C--CCCCceeecCCCCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCC
Q psy15273 8 RGTFVNKLSYKLISFHIGV----------N--CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGH 75 (324)
Q Consensus 8 ~~~~~~~~~~~~~s~~~g~----------~--~~~~P~~v~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~ 75 (324)
...+.+|++|.|+++..+. . .+.+|.++. ...|+++++|..|.++||++|+||+||+|..||||...
T Consensus 189 vil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~ 267 (476)
T COG5184 189 VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPT 267 (476)
T ss_pred EEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCch
Confidence 4567899999999966321 1 113444444 34599999999999999999999999999999999998
Q ss_pred CCCcccceeeecccC-ceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCC----CCCcccccccccccceeee
Q psy15273 76 SDDLHTPSIISALLG-FIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS----DRQRRPRQIEALQGQHAVD 150 (324)
Q Consensus 76 ~~~~~~p~~i~~~~~-~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~----~~~~~P~~V~~l~~~~iv~ 150 (324)
.++...+.++..+-. ..|+.|+ ||. +|++||+++|++|+||.|.+||||.++. .....|.....+.++.|..
T Consensus 268 ~e~~~~~~lv~~~f~i~~i~~va--cG~-~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~ 344 (476)
T COG5184 268 SERLKLVVLVGDPFAIRNIKYVA--CGK-DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICS 344 (476)
T ss_pred hhhcccccccCChhhhhhhhhcc--cCc-ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEE
Confidence 777777776654332 2467898 997 7999999999999999999999999822 2234555556666767777
Q ss_pred eeeec-cc----chhhHHHHhcCceeeeccc--------cccccc-ccccceEEeCCCccchhhhhcceeecCCCCCCHH
Q psy15273 151 VHYRL-HE----MDTAVACIREGMARIIPVP--------LLSLMT-SSHLEQLVCGEPHISLSLLKQIVRYRDLDENHIL 216 (324)
Q Consensus 151 v~~~l-~~----i~~ql~a~~~Gf~~vip~~--------~l~~f~-~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~ 216 (324)
++++. |. .++.+++|+++....+..+ ....++ ...+.+++||..| ++.. +.+..+
T Consensus 345 is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~-~~~~----------t~~gsv 413 (476)
T COG5184 345 ISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHH-NIAR----------TDDGSV 413 (476)
T ss_pred EecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCcc-ceee----------ccCCce
Confidence 77765 32 2678999999864433222 122222 2458999999988 3422 333455
Q ss_pred HHHHHHHHhcCC
Q psy15273 217 VRWMWEVLDSFS 228 (324)
Q Consensus 217 i~~fw~~~~~ls 228 (324)
+.|.|.-..++.
T Consensus 414 y~wG~ge~gnlG 425 (476)
T COG5184 414 YSWGWGEHGNLG 425 (476)
T ss_pred EEecCchhhhcc
Confidence 677777776666
No 13
>KOG0940|consensus
Probab=99.82 E-value=1e-20 Score=174.03 Aligned_cols=141 Identities=30% Similarity=0.585 Sum_probs=130.8
Q ss_pred cchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHHHHHHHHHhcCCHHHHhhee
Q psy15273 157 EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFM 236 (324)
Q Consensus 157 ~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i~~fw~~~~~ls~~~~~~fL 236 (324)
.+..|..++..||...+|......|...+.+.+.||...+++.+|+.++.|.++..++++|.|||+.+..|++++|.+.+
T Consensus 212 ~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~~~~i~wf~~~v~~~~~~~r~r~l 291 (358)
T KOG0940|consen 212 GIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYRGYSETDRQIDWFWNNVDEMDNEERIRLL 291 (358)
T ss_pred HHHHHHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhcccccccCCccccHHHHHhhhhcChHHHHhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCC------cCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHH
Q psy15273 237 RFVSGRSRLPANL------ADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAIN 298 (324)
Q Consensus 237 ~F~TG~~~lP~~~------~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~ 298 (324)
+|+||++++|..+ .+.+++++|.+ ..+.+.||.+|||||+|++|.|++++.|++||..||+
T Consensus 292 ~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~-~~~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 292 QFVTGTSRVPVEGFAILSGSNGPRKFCIEK-WGKSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred hccCCCccccccchhhccCCCccCceeecC-cccccccchhcccccccccccccchhHHHHHHHHhcC
Confidence 9999999999953 23456788877 5677899999999999999999999999999999985
No 14
>KOG0943|consensus
Probab=99.81 E-value=2.8e-20 Score=184.23 Aligned_cols=145 Identities=28% Similarity=0.520 Sum_probs=126.6
Q ss_pred hhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCC-----CHHHHHHHHHHhcCCHHHHh
Q psy15273 159 DTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDEN-----HILVRWMWEVLDSFSHNERV 233 (324)
Q Consensus 159 ~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~-----~~~i~~fw~~~~~ls~~~~~ 233 (324)
.-.+.+++.|..+++|...+.-+++++++.++||..++++..|..++-|..-+.. -+..+|||++++.|+..+|+
T Consensus 2864 ~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQ 2943 (3015)
T KOG0943|consen 2864 EIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQ 2943 (3015)
T ss_pred eccHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4568899999999999999999999999999999999999999999988643222 23668999999999999999
Q ss_pred heeeeecCCCCCCCCCcCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhCcccc
Q psy15273 234 LFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSID 304 (324)
Q Consensus 234 ~fL~F~TG~~~lP~~~~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~~~~ 304 (324)
.++.|+|||+.||+.+.+.++.-.|+-.++++..||+|.||.++|.+|.|+|+++|+.||+.||. ...|+
T Consensus 2944 dLVfFWTgSPaLPAa~e~~p~~aSimiRP~dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIK-aKNFG 3013 (3015)
T KOG0943|consen 2944 DLVFFWTGSPALPAAEEGFPPMASIMIRPPDDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIK-AKNFG 3013 (3015)
T ss_pred cEEEEecCCCCCCccccCCCCCCceeecCcccccCCcccchhhheeeechhhHHHHHHHHHHhhh-ccccc
Confidence 99999999999999766666666666667778899999999999999999999999999999998 44443
No 15
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.80 E-value=1.8e-19 Score=166.85 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=119.7
Q ss_pred eeecceeeeeeeecCCCCCCCCcee------ecCC---CCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCC---
Q psy15273 10 TFVNKLSYKLISFHIGVNCSPVPSK------VDSF---TGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD--- 77 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~~~~P~~------v~~~---~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~--- 77 (324)
.+.+|.+|+||+.+.|+-..++-.. +..+ ..|+.|+||.+|++||+++|++|+||.|.+||||.++..
T Consensus 246 lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~ 325 (476)
T COG5184 246 LTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIG 325 (476)
T ss_pred EecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccc
Confidence 4578999999999987655533222 2222 226889999999999999999999999999999999321
Q ss_pred -CcccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCC--CCCCcccccccccccceeeeeeee
Q psy15273 78 -DLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGN--SDRQRRPRQIEALQGQHAVDVHYR 154 (324)
Q Consensus 78 -~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~--~~~~~~P~~V~~l~~~~iv~v~~~ 154 (324)
....|.....+.++.|..++ +| ++|+++|..+|.||+||+++.||||... ......|..+... .++.++.|+
T Consensus 326 a~~tk~~~~~~~~~~~i~~is--~g-e~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~g 400 (476)
T COG5184 326 ALTTKPNYKQLLSGVTICSIS--AG-ESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACG 400 (476)
T ss_pred eeeccccccccCCCceEEEEe--cC-cceEEEEecCceEEEecCCccccccCcccceeecCCccccccc--cceEEEEec
Confidence 24566667777888898887 88 5899999999999999999999999988 4555556555522 345666666
Q ss_pred cc-c----chhhHHHHhcCceeee
Q psy15273 155 LH-E----MDTAVACIREGMARII 173 (324)
Q Consensus 155 l~-~----i~~ql~a~~~Gf~~vi 173 (324)
-| . .++.+++|+.|.+..+
T Consensus 401 t~~~~~~t~~gsvy~wG~ge~gnl 424 (476)
T COG5184 401 THHNIARTDDGSVYSWGWGEHGNL 424 (476)
T ss_pred CccceeeccCCceEEecCchhhhc
Confidence 42 2 2567888888775443
No 16
>KOG0783|consensus
Probab=99.70 E-value=4.7e-18 Score=164.92 Aligned_cols=152 Identities=29% Similarity=0.405 Sum_probs=120.6
Q ss_pred cceeeeeeeec---CC---CCCCCCceeecCCCC----ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccc
Q psy15273 13 NKLSYKLISFH---IG---VNCSPVPSKVDSFTG----AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTP 82 (324)
Q Consensus 13 ~~~~~~~~s~~---~g---~~~~~~P~~v~~~~~----i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p 82 (324)
-..+|+||++. +| .+....|.+|..+.. +.+|+.|..|++++++.|+||+||.+.-|.||+|+......|
T Consensus 141 pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iP 220 (1267)
T KOG0783|consen 141 PNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIP 220 (1267)
T ss_pred ccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccccccc
Confidence 36799999876 33 233478888888755 789999999999999999999999999999999988888999
Q ss_pred eeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCC-CCCccccccccccc--c-eeeee-eeeccc
Q psy15273 83 SIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS-DRQRRPRQIEALQG--Q-HAVDV-HYRLHE 157 (324)
Q Consensus 83 ~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~-~~~~~P~~V~~l~~--~-~iv~v-~~~l~~ 157 (324)
++|+.+.+.++.+|+ .. ..||++||+.|.||+||.|.++|||..+. .....|.+|..... . .++-+ ++..|+
T Consensus 221 krV~gL~gh~~~qis--vs-~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 221 KRVPGLIGHKVIQIS--VS-HTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred cccccccccceEEEE--ee-cceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 999999999999999 44 46999999999999999999999999765 34456776664322 2 33333 444465
Q ss_pred c---hhhHHHHhc
Q psy15273 158 M---DTAVACIRE 167 (324)
Q Consensus 158 i---~~ql~a~~~ 167 (324)
+ +..+|.||-
T Consensus 298 Vawt~~~VY~wGl 310 (1267)
T KOG0783|consen 298 VAWTDTDVYSWGL 310 (1267)
T ss_pred eeeecceEEEecc
Confidence 4 556666654
No 17
>KOG1428|consensus
Probab=99.54 E-value=1.7e-14 Score=145.64 Aligned_cols=132 Identities=21% Similarity=0.350 Sum_probs=103.5
Q ss_pred ceeecCCCC--ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCc------------------------------
Q psy15273 32 PSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDL------------------------------ 79 (324)
Q Consensus 32 P~~v~~~~~--i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~------------------------------ 79 (324)
.+.+..+.+ |.++|.|..|+++++.+|+||+||.|+.||+|.-.....
T Consensus 604 Sqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VC 683 (3738)
T KOG1428|consen 604 SQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVC 683 (3738)
T ss_pred HHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchh
Confidence 445666766 789999999999999999999999999999985311000
Q ss_pred --------------------------------------------------------------cc-------ceeeec---
Q psy15273 80 --------------------------------------------------------------HT-------PSIISA--- 87 (324)
Q Consensus 80 --------------------------------------------------------------~~-------p~~i~~--- 87 (324)
.. |.+|..
T Consensus 684 a~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~ 763 (3738)
T KOG1428|consen 684 AQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQG 763 (3738)
T ss_pred hhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccC
Confidence 01 112211
Q ss_pred ccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc----hhhH
Q psy15273 88 LLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM----DTAV 162 (324)
Q Consensus 88 ~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i----~~ql 162 (324)
.-+.++++|+ || .+||++|.++++||+||.|.+||||+|+......|+.|..+.+..+++|+.+. |++ ++++
T Consensus 764 ~Hdvkv~sVS--CG-~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsV 840 (3738)
T KOG1428|consen 764 PHDVKVSSVS--CG-NFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSV 840 (3738)
T ss_pred CcceeEEEEe--cc-CceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcE
Confidence 1245677787 99 48999999999999999999999999999999999999999999999999886 443 5665
Q ss_pred HHHh
Q psy15273 163 ACIR 166 (324)
Q Consensus 163 ~a~~ 166 (324)
..|+
T Consensus 841 FTFG 844 (3738)
T KOG1428|consen 841 FTFG 844 (3738)
T ss_pred EEec
Confidence 5543
No 18
>KOG1428|consensus
Probab=99.51 E-value=5.5e-14 Score=142.05 Aligned_cols=100 Identities=27% Similarity=0.484 Sum_probs=89.6
Q ss_pred ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeec
Q psy15273 41 AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGD 120 (324)
Q Consensus 41 i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~ 120 (324)
+.+|+||..|+++|.+|++||++|.|.+||||+|+......|++|..+++..|++|+ +|+ +||+++..||.||+||.
T Consensus 769 v~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVa--AGS-NHT~l~~~DGsVFTFGa 845 (3738)
T KOG1428|consen 769 VSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVA--AGS-NHTILRANDGSVFTFGA 845 (3738)
T ss_pred EEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEe--cCC-CceEEEecCCcEEEecc
Confidence 789999999999999999999999999999999999999999999999999999999 997 79999999999999999
Q ss_pred CCCCCcCCCCCCC---Cccccccccc
Q psy15273 121 GDFGKLGHGNSDR---QRRPRQIEAL 143 (324)
Q Consensus 121 n~~GqLG~g~~~~---~~~P~~V~~l 143 (324)
=..|||+..-.+. -..|.++..+
T Consensus 846 F~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 846 FGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred ccCccccCccccccccccCCCcCCCC
Confidence 9999999754321 2356666654
No 19
>KOG0783|consensus
Probab=99.45 E-value=1.6e-13 Score=133.91 Aligned_cols=125 Identities=29% Similarity=0.469 Sum_probs=96.9
Q ss_pred ecceeeeeeeec-----CC-CCCCCCceeecCCCC--ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCC-Ccccc
Q psy15273 12 VNKLSYKLISFH-----IG-VNCSPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD-DLHTP 82 (324)
Q Consensus 12 ~~~~~~~~~s~~-----~g-~~~~~~P~~v~~~~~--i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~-~~~~p 82 (324)
+.|.+|.-|--. +| .+.-.+|++|+.+.. |.+|+....|+++||.+|-||+||.|..+|||..+.. ....|
T Consensus 194 ~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p 273 (1267)
T KOG0783|consen 194 EKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDP 273 (1267)
T ss_pred CCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCch
Confidence 567788765444 33 223388999998755 9999999999999999999999999999999998633 45566
Q ss_pred eeeecc--cCc-eeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCC-CCCccccccc
Q psy15273 83 SIISAL--LGF-IIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS-DRQRRPRQIE 141 (324)
Q Consensus 83 ~~i~~~--~~~-~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~-~~~~~P~~V~ 141 (324)
.+|... ++. .|+.|+ +|. .||++.|.. .||+||.|. ||||.... ..+..|+.+.
T Consensus 274 ~qI~a~r~kg~~~iIgva--Ag~-~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~ 331 (1267)
T KOG0783|consen 274 IQITARRIKGFKQIIGVA--AGK-SHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLA 331 (1267)
T ss_pred hhhhhHhhcchhhhhhhh--ccc-ceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhc
Confidence 666543 233 688888 885 899999976 899999985 99998765 5567786654
No 20
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.45 E-value=9.6e-14 Score=92.76 Aligned_cols=50 Identities=42% Similarity=0.825 Sum_probs=46.7
Q ss_pred CCcEEEEeCCCCCccC-CCCCCCcccceeeecccCceeEEEEeecCCCCceeee
Q psy15273 57 NGSVLSCGEGSYGRLG-QGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGL 109 (324)
Q Consensus 57 ~G~vy~wG~n~~GqLG-~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~l 109 (324)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+ ||. .||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va--~G~-~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVA--CGS-DHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEE--EES-SEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEE--eCc-ceEEEC
Confidence 6999999999999999 7778889999999999999999999 996 799986
No 21
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.36 E-value=8.1e-13 Score=77.71 Aligned_cols=30 Identities=33% Similarity=0.686 Sum_probs=26.2
Q ss_pred ceEEEccCCeeEEEecCCcEEEEeCCCCCc
Q psy15273 41 AQQVVCGQNCTFVLQVNGSVLSCGEGSYGR 70 (324)
Q Consensus 41 i~~i~~G~~h~~~lt~~G~vy~wG~n~~Gq 70 (324)
|++|+||.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999998
No 22
>KOG0941|consensus
Probab=99.16 E-value=7.8e-13 Score=129.86 Aligned_cols=136 Identities=26% Similarity=0.434 Sum_probs=108.6
Q ss_pred CceeecCCC--CceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceee
Q psy15273 31 VPSKVDSFT--GAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLG 108 (324)
Q Consensus 31 ~P~~v~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~ 108 (324)
.|+++..+. .|.|++||.+|+++++..|++|.||.|.+||+|++.......|..++++.+.+..+|+ ||. .|+++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~--~g~-~hs~~ 80 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVS--AGE-AHSFA 80 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHh--cCC-Ccchh
Confidence 455555554 4899999999999999999999999999999999954333349999999999999998 886 68877
Q ss_pred eee-------cCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc-----hhhHHHHhcCc
Q psy15273 109 LAE-------SGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM-----DTAVACIREGM 169 (324)
Q Consensus 109 lt~-------~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i-----~~ql~a~~~Gf 169 (324)
++. +|.++++|.+..||+|++-......|..+..+.+..+..++|+. |+. -++.++++.|-
T Consensus 81 lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~ 154 (850)
T KOG0941|consen 81 LSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGA 154 (850)
T ss_pred hhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCC
Confidence 766 99999999999999999777788888888777777777777765 322 34555555443
No 23
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.10 E-value=9.7e-11 Score=68.83 Aligned_cols=30 Identities=40% Similarity=1.105 Sum_probs=24.9
Q ss_pred eEEEEeecCCCCceeeeeecCceEEeecCCCCC
Q psy15273 93 IIKVATSCGSDGHSLGLAESGEVFSWGDGDFGK 125 (324)
Q Consensus 93 i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~Gq 125 (324)
|++|+ ||. +|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia--~G~-~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIA--CGG-YHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEE--EES-SEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEE--ecC-CEEEEEEcCCCEEEEcCCcCCC
Confidence 67888 996 7999999999999999999998
No 24
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.79 E-value=4.1e-09 Score=70.12 Aligned_cols=44 Identities=34% Similarity=0.723 Sum_probs=39.8
Q ss_pred cCceEEeecCCCCCcC-CCCCCCCcccccccccccceeeeeeeec
Q psy15273 112 SGEVFSWGDGDFGKLG-HGNSDRQRRPRQIEALQGQHAVDVHYRL 155 (324)
Q Consensus 112 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~V~~l~~~~iv~v~~~l 155 (324)
||+||+||.|.+|||| .+.......|++|+.+.+.++++|+|+.
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~ 45 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGS 45 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEES
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCc
Confidence 6999999999999999 7777888999999988888899999885
No 25
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.95 E-value=15 Score=32.06 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeec------ccCceeEEEEeecCCCCceeeeeec
Q psy15273 39 TGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA------LLGFIIIKVATSCGSDGHSLGLAES 112 (324)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~------~~~~~i~~v~~~cG~~~hs~~lt~~ 112 (324)
..+..+.|-..+-++||.+|.+|.|=-...-..-.. ....|. +.. .....|+.+.+.-- ..-++...+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~---~Si~pl-l~~~~~~~~~~~~~i~~~~lt~~--G~PiV~lsn 86 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP---VSIAPL-LNSSPVSDKSSSPNITSCSLTSN--GVPIVTLSN 86 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC---ccHHHH-hcccccccCCCCCcEEEEEEcCC--CCEEEEEeC
Confidence 357778888889999999999999976542211111 001111 110 12345555554322 234555677
Q ss_pred CceEEeec
Q psy15273 113 GEVFSWGD 120 (324)
Q Consensus 113 G~vy~wG~ 120 (324)
|+.|+|=.
T Consensus 87 g~~y~y~~ 94 (219)
T PF07569_consen 87 GDSYSYSP 94 (219)
T ss_pred CCEEEecc
Confidence 88887744
No 26
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=71.67 E-value=5.9 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCceEEEccC-CeeEEEecCCcEEE
Q psy15273 39 TGAQQVVCGQ-NCTFVLQVNGSVLS 62 (324)
Q Consensus 39 ~~i~~i~~G~-~h~~~lt~~G~vy~ 62 (324)
..+++|++|. ....+++.+|.+|-
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~ 32 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYR 32 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEE
Confidence 4589999999 78888999999985
No 27
>KOG1034|consensus
Probab=54.40 E-value=32 Score=31.83 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=41.8
Q ss_pred ecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeec
Q psy15273 55 QVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGD 120 (324)
Q Consensus 55 t~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~ 120 (324)
...|+||.|-.-. .++...++...+..+..|.+.++|--+ ..-++++++|.|+.|-+
T Consensus 326 nq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEe
Confidence 5679999998532 223356677777778889998875443 47788899999999964
No 28
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=50.60 E-value=17 Score=22.08 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.7
Q ss_pred eeEEEecCCcEEEEeCCC
Q psy15273 50 CTFVLQVNGSVLSCGEGS 67 (324)
Q Consensus 50 h~~~lt~~G~vy~wG~n~ 67 (324)
+.++++.+|.||.-|.-.
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 789999999999999754
No 29
>KOG0943|consensus
Probab=46.06 E-value=16 Score=39.48 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=51.5
Q ss_pred ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCC--CCCCcccceee-ecccCceeEEEEeecCCCCceeeeeecCceEE
Q psy15273 41 AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQG--HSDDLHTPSII-SALLGFIIIKVATSCGSDGHSLGLAESGEVFS 117 (324)
Q Consensus 41 i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~--~~~~~~~p~~i-~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~ 117 (324)
++.|.+=.+.-++|..+|++|.|-+.+.--|-.. ...+...|..- -.+.+.+|+.++ +.. --.-++|++|+|-+
T Consensus 376 ~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lS--ann-iR~si~T~nghlas 452 (3015)
T KOG0943|consen 376 FICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLS--ANN-IRASIATENGHLAS 452 (3015)
T ss_pred eEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEee--cCc-eeeeeeecCCchhh
Confidence 6667666778889999999999999875433321 11222333322 234577899887 443 45667899999999
Q ss_pred eec
Q psy15273 118 WGD 120 (324)
Q Consensus 118 wG~ 120 (324)
|=+
T Consensus 453 WlD 455 (3015)
T KOG0943|consen 453 WLD 455 (3015)
T ss_pred HHh
Confidence 954
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.90 E-value=25 Score=30.64 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=22.1
Q ss_pred CceeEEEEeecCCCCceeeeeecCceEEeecC
Q psy15273 90 GFIIIKVATSCGSDGHSLGLAESGEVFSWGDG 121 (324)
Q Consensus 90 ~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n 121 (324)
+.+++.+. |-+ .+-+|||++|.+|+|=-.
T Consensus 12 gs~~~~l~--~~~-~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLE--CNG-SYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEE--eCC-CEEEEEeCCCeEEEEECC
Confidence 34666676 654 589999999999999543
No 31
>KOG3669|consensus
Probab=43.17 E-value=1.1e+02 Score=30.63 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=50.0
Q ss_pred CCceEEEccC-CeeEEEecCCcEE-EEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceE
Q psy15273 39 TGAQQVVCGQ-NCTFVLQVNGSVL-SCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVF 116 (324)
Q Consensus 39 ~~i~~i~~G~-~h~~~lt~~G~vy-~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy 116 (324)
.++.+|++|. .-..+|+.+|+|| --|-....+.|..= .++.+|+... .++.|+ -|. .-.-|||.+|.++
T Consensus 227 t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsW-kdI~tP~~a~-----~~v~iS--vGt-~t~Waldndg~lw 297 (705)
T KOG3669|consen 227 TDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSW-KDIVTPRQAL-----EPVCIS--VGT-QTLWALDNDGNLW 297 (705)
T ss_pred CccceEeecCcceEEEEeeCCcEEEEecccccCCCCchh-hhccCccccc-----ceEEEE--ecc-ceEEEEecCCcEE
Confidence 3588999999 6778999999886 45666666666542 2444454432 267777 885 4778999999987
Q ss_pred Ee
Q psy15273 117 SW 118 (324)
Q Consensus 117 ~w 118 (324)
.=
T Consensus 298 fr 299 (705)
T KOG3669|consen 298 FR 299 (705)
T ss_pred EE
Confidence 43
No 32
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=43.13 E-value=46 Score=24.09 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=28.7
Q ss_pred CceeecCCCCceEEEcc-CCeeEEEecCCcEEEEeCCCCCccC
Q psy15273 31 VPSKVDSFTGAQQVVCG-QNCTFVLQVNGSVLSCGEGSYGRLG 72 (324)
Q Consensus 31 ~P~~v~~~~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~GqLG 72 (324)
.|..+.....=..|+|. ..-.++|+.||.+|+-|--+.|++=
T Consensus 8 ~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 8 HPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp --SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred ccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 35555555555789999 7888999999999998876666553
No 33
>PLN02772 guanylate kinase
Probab=41.33 E-value=62 Score=30.95 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=34.9
Q ss_pred eeEEEecCCcEEEEeC-CCCCccCCC----C--CCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCC
Q psy15273 50 CTFVLQVNGSVLSCGE-GSYGRLGQG----H--SDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGD 122 (324)
Q Consensus 50 h~~~lt~~G~vy~wG~-n~~GqLG~~----~--~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~ 122 (324)
|+.+ +-+.++|.||- |..|++-.. + +..-..|+..-..+. + |- -||+++-.+.+++..+.+.
T Consensus 28 ~tav-~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~------~--r~--GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 28 ETSV-TIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK------P--CK--GYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ceeE-EECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC------C--CC--cceEEEECCceEEEEeCCC
Confidence 5444 44679999994 444434322 1 111223333322221 1 43 4999999999999998653
No 34
>KOG0315|consensus
Probab=37.08 E-value=2.9e+02 Score=24.80 Aligned_cols=54 Identities=7% Similarity=-0.120 Sum_probs=33.1
Q ss_pred eecceeeeeeeecCCCCCCCCceeecCCCCceEEEccCCeeE--EEecCCcEEEEeCCC
Q psy15273 11 FVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTF--VLQVNGSVLSCGEGS 67 (324)
Q Consensus 11 ~~~~~~~~~~s~~~g~~~~~~P~~v~~~~~i~~i~~G~~h~~--~lt~~G~vy~wG~n~ 67 (324)
+++|.++.|-=-..-.....+|..- ..|++++.+..-++ ++++.|+.|.|-.-.
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~---~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDD---TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCC---cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3566677774222222344555433 34777777766554 567889999998754
No 35
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=35.97 E-value=68 Score=17.74 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=13.5
Q ss_pred eeEEEecCCcEEEEeCC
Q psy15273 50 CTFVLQVNGSVLSCGEG 66 (324)
Q Consensus 50 h~~~lt~~G~vy~wG~n 66 (324)
|.++++.+|++|..-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 67888899999986654
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=32.23 E-value=48 Score=20.71 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=11.9
Q ss_pred CCeeEEEecCCcEEEEeC
Q psy15273 48 QNCTFVLQVNGSVLSCGE 65 (324)
Q Consensus 48 ~~h~~~lt~~G~vy~wG~ 65 (324)
..|+++...++++|.+|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888888899999993
No 37
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.16 E-value=2.1e+02 Score=26.95 Aligned_cols=72 Identities=13% Similarity=0.302 Sum_probs=41.8
Q ss_pred ceEEEccCC-ee-EEEecCCc-EEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceEE
Q psy15273 41 AQQVVCGQN-CT-FVLQVNGS-VLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFS 117 (324)
Q Consensus 41 i~~i~~G~~-h~-~~lt~~G~-vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~ 117 (324)
+..|..|.. |. ++.+.||+ +|..+. .|.+ ..|+......+..|. .|...+.++++.||+...
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v-----------sviD~~~~~~v~~i~--~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV-----------SVIDLATGKVVATIK--VGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE-----------EEEETTSSSEEEEEE---SSEEEEEEE--TTTEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE-----------EEEECCcccEEEEEe--cCCCcceEEEcCCCCEEE
Confidence 678887765 65 55678886 887653 3432 345544555667777 666678999999998665
Q ss_pred eecCCCCCcC
Q psy15273 118 WGDGDFGKLG 127 (324)
Q Consensus 118 wG~n~~GqLG 127 (324)
-+.-..+++.
T Consensus 94 v~n~~~~~v~ 103 (369)
T PF02239_consen 94 VANYEPGTVS 103 (369)
T ss_dssp EEEEETTEEE
T ss_pred EEecCCCcee
Confidence 5544444443
No 38
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=26.60 E-value=17 Score=25.97 Aligned_cols=31 Identities=42% Similarity=0.769 Sum_probs=11.6
Q ss_pred ceeeecccCceeEEEEeecCCCCceeeeeecCceEEee
Q psy15273 82 PSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWG 119 (324)
Q Consensus 82 p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG 119 (324)
|+.+..+.+ +|-+| ||- .+-++.+|++|.--
T Consensus 1 pkp~k~~~~-qiCqi---CGD---~VGl~~~Ge~FVAC 31 (80)
T PF14569_consen 1 PKPLKNLNG-QICQI---CGD---DVGLTENGEVFVAC 31 (80)
T ss_dssp SS--S--SS--B-SS---S-----B--B-SSSSB--S-
T ss_pred CcChhhcCC-ccccc---ccC---ccccCCCCCEEEEE
Confidence 344555544 56667 984 47889999998653
No 39
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=23.93 E-value=49 Score=23.73 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=8.9
Q ss_pred CcE-EEEeCCCCC
Q psy15273 58 GSV-LSCGEGSYG 69 (324)
Q Consensus 58 G~v-y~wG~n~~G 69 (324)
-.+ |+||+|+.-
T Consensus 56 Psv~waWGSNKnk 68 (84)
T PF07312_consen 56 PSVYWAWGSNKNK 68 (84)
T ss_pred cceeeeeccCCCC
Confidence 357 999999743
No 40
>KOG0289|consensus
Probab=23.85 E-value=4.2e+02 Score=25.70 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=41.7
Q ss_pred CeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccC--ceeEEEEeecCCCCceeeeeecCceEEeec
Q psy15273 49 NCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLG--FIIIKVATSCGSDGHSLGLAESGEVFSWGD 120 (324)
Q Consensus 49 ~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~--~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~ 120 (324)
.|+.++-.||-+|.-|.- .|++-.=+... +..+..|++ .+|+.|+++=-| |+-+.-++||.|..|--
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks---~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKS---QTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCC---ccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEe
Confidence 577777788888877764 35554333222 233333443 378888865444 56666678888999975
No 41
>KOG4441|consensus
Probab=23.35 E-value=5.8e+02 Score=25.74 Aligned_cols=107 Identities=12% Similarity=-0.044 Sum_probs=56.2
Q ss_pred EEeeeeeecceeeeeeeecCCCCCCCCceeecCCCC----ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcc
Q psy15273 5 VTLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTG----AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLH 80 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~s~~~g~~~~~~P~~v~~~~~----i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~ 80 (324)
...+.+..+|++|.-|++....++...-.......+ +..+.....+.-+..-+|.+|..|--.. +-... .
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~---~-- 492 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG-TSALS---S-- 492 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC-CCccc---e--
Confidence 456778889999999998876543333333333333 2223333333336666899999995432 11110 0
Q ss_pred cceeeecccCceeEEEE-eecCCCCceeeeeecCceEEeec
Q psy15273 81 TPSIISALLGFIIIKVA-TSCGSDGHSLGLAESGEVFSWGD 120 (324)
Q Consensus 81 ~p~~i~~~~~~~i~~v~-~~cG~~~hs~~lt~~G~vy~wG~ 120 (324)
+..-.+...+...++ +..+. .+.-+..-+|++|.-|.
T Consensus 493 --VE~ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 493 --VERYDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGG 530 (571)
T ss_pred --EEEEcCCCCceeEcccCcccc-ccccEEEECCEEEEEec
Confidence 111111112222222 11333 35556667889999985
No 42
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=21.63 E-value=31 Score=24.93 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=17.5
Q ss_pred cCCHHHHhheeeeecCCCC
Q psy15273 226 SFSHNERVLFMRFVSGRSR 244 (324)
Q Consensus 226 ~ls~~~~~~fL~F~TG~~~ 244 (324)
+|+++|-+.|=+|+|+|+.
T Consensus 51 ~lTpDQVrAlHRlvTsSpe 69 (92)
T PHA02681 51 KMTDDQVRAFHALVTSSPE 69 (92)
T ss_pred cCCHHHHHHHHHHHhCCCC
Confidence 6999999999999999975
No 43
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=20.20 E-value=3.9e+02 Score=20.48 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=36.6
Q ss_pred eEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceEEe
Q psy15273 42 QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSW 118 (324)
Q Consensus 42 ~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~w 118 (324)
+++-|-..+.+.+..+|.|-+-+.. .+.........+.. ..+.|..+. . ..-++++..|.||+=
T Consensus 3 ~~Ly~~~~~~L~i~~~g~V~gt~~~-------~~~~s~~~i~~~~~-g~V~i~~~~--s---~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 3 VQLYCRTGYFLQINPNGTVDGTGDD-------NSPYSVFEIHSVGF-GVVRIRGVK--S---CRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEETTSEEEEEETTSBEEEESST-------TSTTGEEEEEEEET-TEEEEEETT--T---TEEEEEBTTSBEEEE
T ss_pred EEEEECCCeEEEECCCCeEeCCCCc-------CcceeEEEEEeccc-eEEEEEEec--c---eEEEEECCCCeEccc
Confidence 5667776778899999999765533 11122222222222 222333332 2 245899999999984
Done!