Query psy15273
Match_columns 324
No_of_seqs 341 out of 2513
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 16:51:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvd_A SMAD ubiquitination reg 100.0 1.7E-42 5.7E-47 324.0 5.0 168 139-306 206-380 (380)
2 1c4z_A E6AP, ubiquitin-protein 100.0 5.4E-42 1.9E-46 318.2 3.6 167 137-305 187-357 (358)
3 3h1d_A E3 ubiquitin-protein li 100.0 9.3E-42 3.2E-46 320.0 4.7 164 142-305 233-404 (405)
4 1nd7_A WW domain-containing pr 100.0 8.5E-41 2.9E-45 312.1 5.8 160 141-301 208-374 (374)
5 3olm_A E3 ubiquitin-protein li 100.0 8.6E-41 2.9E-45 316.5 4.4 163 142-305 259-428 (429)
6 2oni_A E3 ubiquitin-protein li 100.0 9.6E-40 3.3E-44 306.3 3.5 157 142-299 228-392 (392)
7 3pt3_A E3 ubiquitin-protein li 100.0 2.4E-37 8.2E-42 240.1 6.2 109 194-305 2-117 (118)
8 3kci_A Probable E3 ubiquitin-p 100.0 1.7E-29 5.8E-34 238.6 11.8 196 10-208 122-340 (389)
9 4d9s_A UVB-resistance protein 100.0 3.5E-29 1.2E-33 237.7 13.5 195 10-208 136-352 (406)
10 3kci_A Probable E3 ubiquitin-p 100.0 1.9E-29 6.5E-34 238.2 9.6 194 10-208 68-288 (389)
11 4d9s_A UVB-resistance protein 100.0 6E-29 2.1E-33 236.1 12.8 194 10-208 31-248 (406)
12 1a12_A RCC1, regulator of chro 99.9 1.8E-27 6.1E-32 226.3 14.0 181 10-195 179-402 (413)
13 1a12_A RCC1, regulator of chro 99.9 2.5E-27 8.6E-32 225.3 12.4 193 10-208 126-360 (413)
14 3of7_A Regulator of chromosome 99.9 5.8E-27 2E-31 226.6 11.9 191 10-208 163-400 (473)
15 3mvd_K Regulator of chromosome 99.9 1.8E-26 6E-31 220.0 11.9 180 10-196 39-254 (423)
16 3mvd_K Regulator of chromosome 99.9 4.4E-26 1.5E-30 217.3 13.6 191 10-208 90-317 (423)
17 3of7_A Regulator of chromosome 99.9 2.8E-26 9.7E-31 221.8 11.7 194 11-208 26-280 (473)
18 3qhy_B Beta-lactamase inhibito 99.9 4.5E-23 1.5E-27 186.3 12.0 158 13-208 41-202 (282)
19 3qhy_B Beta-lactamase inhibito 99.9 7.6E-22 2.6E-26 178.2 11.9 163 13-213 80-247 (282)
20 4gbf_A Phikz131; 7-bladed beta 95.2 0.036 1.2E-06 47.9 6.5 72 39-126 309-380 (400)
21 4gbf_A Phikz131; 7-bladed beta 65.1 3 0.0001 36.0 2.2 35 92-129 310-344 (400)
22 1k3i_A Galactose oxidase precu 39.7 56 0.0019 31.6 7.0 74 49-124 458-533 (656)
23 1sn9_A BBAT, tetrameric beta-B 27.1 39 0.0013 17.3 1.7 19 279-297 3-21 (26)
24 1l6x_B Minimized B-domain of p 25.4 29 0.001 19.7 1.2 21 217-237 6-28 (34)
25 2diu_A KIAA0430 protein; struc 23.6 87 0.003 22.5 3.8 35 267-301 4-38 (96)
26 2ln3_A De novo designed protei 21.2 23 0.00079 23.2 0.3 24 291-321 14-38 (83)
No 1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=324.04 Aligned_cols=168 Identities=27% Similarity=0.557 Sum_probs=145.2
Q ss_pred cccccccceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHH
Q psy15273 139 QIEALQGQHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILV 217 (324)
Q Consensus 139 ~V~~l~~~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i 217 (324)
..++...+.-..+.+++ .++..|+.||++||++++|...+.+|+++|++.++||..++|+++|++++.|.||+.++++|
T Consensus 206 T~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i 285 (380)
T 1zvd_A 206 NEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIV 285 (380)
T ss_dssp TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHH
T ss_pred ccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecCCCCCcchh
Confidence 33344444445556776 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHhheeeeecCCCCCCCCC-cCC-----CcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHH
Q psy15273 218 RWMWEVLDSFSHNERVLFMRFVSGRSRLPANL-ADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAE 291 (324)
Q Consensus 218 ~~fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~-----~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~ 291 (324)
+|||+++++|++++|++||+|+|||+|+|++| +.+ +++|+|.+.+.++++||+||||||+|+||+|+|+|+|++
T Consensus 286 ~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~ 365 (380)
T 1zvd_A 286 KWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYE 365 (380)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHH
T ss_pred hhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHH
Confidence 99999999999999999999999999999965 444 247999877778899999999999999999999999999
Q ss_pred HHHHHHHhCcccccc
Q psy15273 292 KLRYAINNCKSIDMD 306 (324)
Q Consensus 292 kL~~Ai~~~~~~~~d 306 (324)
||++||++++||++.
T Consensus 366 kL~~AI~~~~GF~l~ 380 (380)
T 1zvd_A 366 KLLTAIEETCGFAVE 380 (380)
T ss_dssp HHHHHHCC-------
T ss_pred HHHHHHHhCCCcCcC
Confidence 999999999999874
No 2
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=5.4e-42 Score=318.17 Aligned_cols=167 Identities=29% Similarity=0.532 Sum_probs=143.6
Q ss_pred cccccccccceeeeeeeecc-cchhhHHHHhcCceeeecccccc-cccccccceEEeCCCccchhhhhcceeec-CCCCC
Q psy15273 137 PRQIEALQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLS-LMTSSHLEQLVCGEPHISLSLLKQIVRYR-DLDEN 213 (324)
Q Consensus 137 P~~V~~l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~-~f~~~el~~l~cG~~~i~v~~l~~~~~y~-g~~~~ 213 (324)
|+..++...+.-..+.++++ ++..|+.||++||+.++|...+. +|+++|++.++||..++|+++|++++.|. ||+.+
T Consensus 187 ~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~ 266 (358)
T 1c4z_A 187 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRD 266 (358)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSS
T ss_pred ccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCC
Confidence 33333444444445567774 78999999999999999988775 89999999999999999999999999998 79999
Q ss_pred CHHHHHHHHHHhcCCHHHHhheeeeecCCCCCCCCCc-CCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHH
Q psy15273 214 HILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLA-DLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEK 292 (324)
Q Consensus 214 ~~~i~~fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~~-~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~k 292 (324)
+++|+|||+++++|++++|++||+|+|||+|+|++|. .+ +|+|.+.+.+.++||+||||||+|+||+|+|+|+|++|
T Consensus 267 ~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~k 344 (358)
T 1c4z_A 267 SVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKER 344 (358)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHH
T ss_pred cchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccc--eeeeecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999764 34 58888876677899999999999999999999999999
Q ss_pred HHHHHHhCccccc
Q psy15273 293 LRYAINNCKSIDM 305 (324)
Q Consensus 293 L~~Ai~~~~~~~~ 305 (324)
|++||++++||++
T Consensus 345 L~~AI~~~~GFgl 357 (358)
T 1c4z_A 345 LLKAITYAKGFGM 357 (358)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHhCCCCCc
Confidence 9999999999986
No 3
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=9.3e-42 Score=319.99 Aligned_cols=164 Identities=35% Similarity=0.615 Sum_probs=144.1
Q ss_pred ccccceeeeeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHHHHH
Q psy15273 142 ALQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWM 220 (324)
Q Consensus 142 ~l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i~~f 220 (324)
+...+.-..+.+.++ ++..|+.||++||++++|...+.+|+++|++.++||.++||+++|++++.|.||+.++++|+||
T Consensus 233 Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~gy~~~~~~i~~F 312 (405)
T 3h1d_A 233 NKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWF 312 (405)
T ss_dssp THHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEESSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccCCCCCCchHhhH
Confidence 333344445567774 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHhheeeeecCCCCCCCCC-cCCC-----cceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHH
Q psy15273 221 WEVLDSFSHNERVLFMRFVSGRSRLPANL-ADLS-----QRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLR 294 (324)
Q Consensus 221 w~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~~-----~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~ 294 (324)
|+++++|++++|++||+|+|||+|+|++| +.+. ++|+|.+.+.++++||+||||||+|+||+|+|+|+|++||+
T Consensus 313 W~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~ 392 (405)
T 3h1d_A 313 WRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLL 392 (405)
T ss_dssp HHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHH
Confidence 99999999999999999999999999965 4443 58999888778899999999999999999999999999999
Q ss_pred HHHHh-Cccccc
Q psy15273 295 YAINN-CKSIDM 305 (324)
Q Consensus 295 ~Ai~~-~~~~~~ 305 (324)
+||++ ++||++
T Consensus 393 ~AI~e~~~GFgl 404 (405)
T 3h1d_A 393 LAIQEASEGFGL 404 (405)
T ss_dssp HHHHC-------
T ss_pred HHHHhCCCCcCC
Confidence 99998 579986
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=8.5e-41 Score=312.09 Aligned_cols=160 Identities=28% Similarity=0.533 Sum_probs=143.4
Q ss_pred cccccceeeeeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHHHH
Q psy15273 141 EALQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRW 219 (324)
Q Consensus 141 ~~l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i~~ 219 (324)
++...+.-..+.++++ ++..|+.||++||++++|...+.+|+++|++.++||..+||+++|++++.|.||+.++++|+|
T Consensus 208 ~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i~~ 287 (374)
T 1nd7_A 208 ENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIW 287 (374)
T ss_dssp TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcCCCCCCcceee
Confidence 3333444445566664 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHhheeeeecCCCCCCCCC-cCC-----CcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHH
Q psy15273 220 MWEVLDSFSHNERVLFMRFVSGRSRLPANL-ADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKL 293 (324)
Q Consensus 220 fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~-----~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL 293 (324)
||+++++|++++|++||+|+|||+|+|++| +.+ +++|+|.+.+ ++++||+||||||+|+||+|+|+|+|++||
T Consensus 288 FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~-~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL 366 (374)
T 1nd7_A 288 FWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKL 366 (374)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCceEEEeCC-CCCcCCEEEcccCEEECCCCCCHHHHHHHH
Confidence 999999999999999999999999999965 444 3579998764 568999999999999999999999999999
Q ss_pred HHHHHhCc
Q psy15273 294 RYAINNCK 301 (324)
Q Consensus 294 ~~Ai~~~~ 301 (324)
++||++++
T Consensus 367 ~~AI~~~e 374 (374)
T 1nd7_A 367 LFAIEETE 374 (374)
T ss_dssp HHHHHSCC
T ss_pred HHHHHhcC
Confidence 99999874
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-41 Score=316.50 Aligned_cols=163 Identities=25% Similarity=0.540 Sum_probs=143.8
Q ss_pred ccccceeeeeeeecc-cchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHHHHH
Q psy15273 142 ALQGQHAVDVHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWM 220 (324)
Q Consensus 142 ~l~~~~iv~v~~~l~-~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i~~f 220 (324)
+...+.-..+.++++ ++..|+.||++||++++|...+.+|+++|++.++||..+||+++|++++.|.||+.++++|+||
T Consensus 259 Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~Gy~~~~~~I~~F 338 (429)
T 3olm_A 259 NKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRGYQESDEVIQWF 338 (429)
T ss_dssp THHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEESCCTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhccccCCCCCchHHHHH
Confidence 333344445566774 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHhheeeeecCCCCCCCCC-cCCC-----cceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHH
Q psy15273 221 WEVLDSFSHNERVLFMRFVSGRSRLPANL-ADLS-----QRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLR 294 (324)
Q Consensus 221 w~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~~-----~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~ 294 (324)
|+++++|++++|++||+|+|||+|+|++| +.+. ++|+|.+.+ ++++||+||||||+|+||+|+|+|+|++||+
T Consensus 339 W~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~-~~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~ 417 (429)
T 3olm_A 339 WKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG-EVQQLPKSHTCFNRVDLPQYVDYDSMKQKLT 417 (429)
T ss_dssp HHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEECCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcCCCceEEEeeCC-CCCCCCccccccCEeECCCCCCHHHHHHHHH
Confidence 99999999999999999999999999965 4454 379998764 4789999999999999999999999999999
Q ss_pred HHHHhCccccc
Q psy15273 295 YAINNCKSIDM 305 (324)
Q Consensus 295 ~Ai~~~~~~~~ 305 (324)
+||++++||+.
T Consensus 418 ~AI~~~~GFg~ 428 (429)
T 3olm_A 418 LAVEETIGFGQ 428 (429)
T ss_dssp HHHHHTC----
T ss_pred HHHHcCCCCCC
Confidence 99999999975
No 6
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=9.6e-40 Score=306.28 Aligned_cols=157 Identities=28% Similarity=0.578 Sum_probs=139.7
Q ss_pred ccccceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecC-CCCCCHHHHH
Q psy15273 142 ALQGQHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD-LDENHILVRW 219 (324)
Q Consensus 142 ~l~~~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g-~~~~~~~i~~ 219 (324)
+...+.-..+.+++ .++..|+.||++||.+++|...+.+|+++|++.++||..++|+++|++++.|.+ |+.++++|+|
T Consensus 228 N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~~~~i~~ 307 (392)
T 2oni_A 228 NKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQW 307 (392)
T ss_dssp THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCCCchhee
Confidence 33334444456666 478999999999999999999999999999999999999999999999999984 8999999999
Q ss_pred HHHHHhcCCHHHHhheeeeecCCCCCCCCC-cCC-----CcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHH
Q psy15273 220 MWEVLDSFSHNERVLFMRFVSGRSRLPANL-ADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKL 293 (324)
Q Consensus 220 fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~-----~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL 293 (324)
||+++++|++++|++||+|+|||+|+|++| +.+ +++|+|.+.+ ++++||+||||||+|+||+|+|+|+|++||
T Consensus 308 FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~-~~~~LP~a~TCfn~L~LP~Yss~e~L~~kL 386 (392)
T 2oni_A 308 FWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG-SPEKLPRAHTCFNRLDLPPYETFEDLREKL 386 (392)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCCEEEECS-CTTSCCEEEGGGTEEEECCCSSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhhcccCCCCceEEEeCC-CCCcCcEEEcccCEeECCCCCCHHHHHHHH
Confidence 999999999999999999999999999965 444 3578888764 568999999999999999999999999999
Q ss_pred HHHHHh
Q psy15273 294 RYAINN 299 (324)
Q Consensus 294 ~~Ai~~ 299 (324)
++||+|
T Consensus 387 ~~AI~n 392 (392)
T 2oni_A 387 LMAVEN 392 (392)
T ss_dssp HHHHC-
T ss_pred HHHHhC
Confidence 999985
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=240.07 Aligned_cols=109 Identities=30% Similarity=0.495 Sum_probs=76.7
Q ss_pred CccchhhhhcceeecCC-CCCC----HHHHHHHHHHhcCCHHHHhheeeeecCCCCCCC--CCcCCCcceEEeeeCCCCC
Q psy15273 194 PHISLSLLKQIVRYRDL-DENH----ILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPA--NLADLSQRFQVMKVDRCID 266 (324)
Q Consensus 194 ~~i~v~~l~~~~~y~g~-~~~~----~~i~~fw~~~~~ls~~~~~~fL~F~TG~~~lP~--~~~~~~~~~~i~~~~~~~~ 266 (324)
++||+++|++++.|.++ ..++ ++|+|||+++++|++++|++||+|+||++|+|+ +|....++|+|. ..+++
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l~~~~i~--~~~~~ 79 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIR--PPDDQ 79 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC------------CEEEEE--SCCTT
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccCCcEEEE--CCCCC
Confidence 57899999999999975 4555 899999999999999999999999999999999 443333678876 45678
Q ss_pred CCceeccccceeecCCCCCHHHHHHHHHHHHHhCccccc
Q psy15273 267 GLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDM 305 (324)
Q Consensus 267 ~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~~~~~ 305 (324)
+||+||||||+|+||+|+|+|+|++||++||++ .+|++
T Consensus 80 ~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 80 HLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp SCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred CCccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence 999999999999999999999999999999997 88874
No 8
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=238.57 Aligned_cols=196 Identities=27% Similarity=0.455 Sum_probs=162.6
Q ss_pred eeecceeeeeeeecCCCCC------CCCceeecCCC--CceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCccc
Q psy15273 10 TFVNKLSYKLISFHIGVNC------SPVPSKVDSFT--GAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHT 81 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~------~~~P~~v~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~ 81 (324)
.+.+|.+|.||....|+.. ...|+++..+. +|++|+||.+|+++|+++|+||+||.|.+||||+++......
T Consensus 122 l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 201 (389)
T 3kci_A 122 LSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLK 201 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred EcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCccccc
Confidence 4568999999998866432 36788888776 499999999999999999999999999999999999989999
Q ss_pred ceeeecccCceeEEEEeecCC-CCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc-
Q psy15273 82 PSIISALLGFIIIKVATSCGS-DGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM- 158 (324)
Q Consensus 82 p~~i~~~~~~~i~~v~~~cG~-~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i- 158 (324)
|+++..+.+.+|++|+ ||. ++|+++|+++|+||+||.|.+||||.+.......|..|..+.+..+++|+|+. |++
T Consensus 202 p~~v~~~~~~~v~~ia--~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~a 279 (389)
T 3kci_A 202 PKLVEALQGHRVVDIA--CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVA 279 (389)
T ss_dssp EEECGGGTTSCEEEEE--ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEE
T ss_pred ceEecccCCCeEEEEE--EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEE
Confidence 9999999999999999 984 47999999999999999999999999998888899999988888899999986 443
Q ss_pred ---hhhHHHHhcCcee---------eecccccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 159 ---DTAVACIREGMAR---------IIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 159 ---~~ql~a~~~Gf~~---------vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
++++++|+.+.+. ...+..+..+....+.+|+||..| ++....+..+|.
T Consensus 280 lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h-~~al~~~G~v~~ 340 (389)
T 3kci_A 280 LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLH-CVCCTEDGEVYT 340 (389)
T ss_dssp EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSE-EEEEETTCCEEE
T ss_pred EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCe-EEEECCCCCEEE
Confidence 6788898876422 112223445566779999999999 454445555554
No 9
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=99.96 E-value=3.5e-29 Score=237.66 Aligned_cols=195 Identities=23% Similarity=0.356 Sum_probs=162.0
Q ss_pred eeecceeeeeeeecCCCCC------CCCceeecCCC--CceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCccc
Q psy15273 10 TFVNKLSYKLISFHIGVNC------SPVPSKVDSFT--GAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHT 81 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~------~~~P~~v~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~ 81 (324)
.+.+|++|.||....|+.. ...|+++..+. +|++|+||.+|+++|+++|+||+||.|.+||||.++......
T Consensus 136 lt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~ 215 (406)
T 4d9s_A 136 VTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV 215 (406)
T ss_dssp EETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEE
T ss_pred EcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCc
Confidence 4578999999998866533 35788888776 499999999999999999999999999999999999888999
Q ss_pred ceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc--
Q psy15273 82 PSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM-- 158 (324)
Q Consensus 82 p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i-- 158 (324)
|.++..+.+.+|++|+ ||. +|+++|+++|+||+||.|.+||||.+.......|..++.+.+..+++|+++. |++
T Consensus 216 p~~v~~~~~~~i~~va--~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~al 292 (406)
T 4d9s_A 216 PERVTSTGGEKMSMVA--CGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMAL 292 (406)
T ss_dssp EEECCCSTTCCEEEEE--ECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEE
T ss_pred cEEecccCCceEEEEE--ECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEE
Confidence 9999999888999999 996 7999999999999999999999999998888899999988888899999986 443
Q ss_pred --hhhHHHHhcCceee---------ecccccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 159 --DTAVACIREGMARI---------IPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 159 --~~ql~a~~~Gf~~v---------ip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
++.+++|+.+.+.. ..+..+.......+.+|+||..| ++....+...|.
T Consensus 293 t~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~h-s~alt~~G~v~~ 352 (406)
T 4d9s_A 293 TSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRH-TLAVTERNNVFA 352 (406)
T ss_dssp ETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSE-EEEEETTSCEEE
T ss_pred cCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCe-EEEEeCCCCEEE
Confidence 67888888754221 12223344556689999999999 454445555553
No 10
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=238.19 Aligned_cols=194 Identities=28% Similarity=0.492 Sum_probs=161.2
Q ss_pred eeecceeeeeeeecCCCC------CCCCceeecCCCC----ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCc
Q psy15273 10 TFVNKLSYKLISFHIGVN------CSPVPSKVDSFTG----AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDL 79 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~------~~~~P~~v~~~~~----i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~ 79 (324)
.+.+|.+|.||....|+. ....|+++..+.+ +++|+||.+|+++|+++|+||+||.|.+||||+++....
T Consensus 68 l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~ 147 (389)
T 3kci_A 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC 147 (389)
T ss_dssp EETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCE
T ss_pred EcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccC
Confidence 457899999999886653 2367888887765 378999999999999999999999999999999998889
Q ss_pred ccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec---c
Q psy15273 80 HTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL---H 156 (324)
Q Consensus 80 ~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l---~ 156 (324)
..|++|+.+.+.+|++|+ ||. +|++||+++|+||+||.|.+||||.+.......|+.+..+.+.++++++|+. |
T Consensus 148 ~~p~~v~~l~~~~i~~va--~G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~ 224 (389)
T 3kci_A 148 DRPRVIESLRGIEVVDVA--AGG-AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQ 224 (389)
T ss_dssp EEEEECGGGTTSCEEEEE--ECS-SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCE
T ss_pred cCCeEecccCCCeEEEEE--eCc-CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcE
Confidence 999999999999999999 996 7999999999999999999999999998888899999998888999999873 4
Q ss_pred cc----hhhHHHHhcCceee----------ecccccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 157 EM----DTAVACIREGMARI----------IPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 157 ~i----~~ql~a~~~Gf~~v----------ip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
++ ++.+++|+.+.+.. .|. .+..+....+.+|.||..| ++....+..+|.
T Consensus 225 t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~-~v~~~~~~~v~~v~~G~~h-s~alt~~G~v~~ 288 (389)
T 3kci_A 225 TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPM-KIDSLTGLGVVKVECGSQF-SVALTKSGAVYT 288 (389)
T ss_dssp EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEE-ECGGGTTSCEEEEEEETTE-EEEEETTSCEEE
T ss_pred EEEEccCCEEEEEeCCCCCCCCCCCCCCccccE-EecccCCCcEEEEeCCCCE-EEEEeCCCeEEE
Confidence 32 67888887754222 222 3445556679999999999 555555666664
No 11
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=99.96 E-value=6e-29 Score=236.06 Aligned_cols=194 Identities=29% Similarity=0.483 Sum_probs=162.3
Q ss_pred eeecceeeeeeeecCCCCCC------CCceeecCCC--CceEEEccCCeeEEEecCC-cEEEEeCCCCCccCCCCCCCcc
Q psy15273 10 TFVNKLSYKLISFHIGVNCS------PVPSKVDSFT--GAQQVVCGQNCTFVLQVNG-SVLSCGEGSYGRLGQGHSDDLH 80 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~~------~~P~~v~~~~--~i~~i~~G~~h~~~lt~~G-~vy~wG~n~~GqLG~~~~~~~~ 80 (324)
.+.+|.+|.||+...|+... ..|+++..+. +|++|+||..|+++|+++| +||+||.|.+||||+++.....
T Consensus 31 l~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~ 110 (406)
T 4d9s_A 31 LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLF 110 (406)
T ss_dssp EETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEE
T ss_pred EEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccc
Confidence 45689999999988765332 6788888766 5999999999999999886 9999999999999999988889
Q ss_pred cceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc-
Q psy15273 81 TPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM- 158 (324)
Q Consensus 81 ~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i- 158 (324)
.|.++..+.+.+|++|+ ||. +|++||+++|+||+||.|.+||||.+.......|+.+..+.+.++++|+++. |++
T Consensus 111 ~p~~v~~l~~~~i~~ia--~G~-~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~a 187 (406)
T 4d9s_A 111 TPLPIKALHGIRIKQIA--CGD-SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 187 (406)
T ss_dssp EEEECGGGTTCCEEEEE--ECS-SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred cceEecccCCCCEEEEE--ECh-hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEE
Confidence 99999999999999999 996 7999999999999999999999999998888899999988888999999986 443
Q ss_pred ---hhhHHHHhcCce----------eeecccccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 159 ---DTAVACIREGMA----------RIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 159 ---~~ql~a~~~Gf~----------~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
++.+++|+.+.+ ...|. .+..+....+.+|+||..| ++....+...|.
T Consensus 188 lt~~G~v~~wG~n~~GqlG~g~~~~~~~p~-~v~~~~~~~i~~va~G~~h-t~~l~~~G~v~~ 248 (406)
T 4d9s_A 188 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPE-RVTSTGGEKMSMVACGWRH-TISVSYSGALYT 248 (406)
T ss_dssp EETTSCEEEEECCTTSTTCSSSSCCEEEEE-ECCCSTTCCEEEEEECSSE-EEEEETTCCEEE
T ss_pred EeCCCCEEEeeCCCCCCCCCCCCCCcCccE-EecccCCceEEEEEECCCc-EEEEcCCCCEEE
Confidence 678888876532 22333 3445566789999999999 555555666664
No 12
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=99.95 E-value=1.8e-27 Score=226.35 Aligned_cols=181 Identities=21% Similarity=0.314 Sum_probs=146.8
Q ss_pred eeecceeeeeeeecCCCCCC-----------------CCceeecCC-------CCceEEEccCCeeEEEecCCcEEEEeC
Q psy15273 10 TFVNKLSYKLISFHIGVNCS-----------------PVPSKVDSF-------TGAQQVVCGQNCTFVLQVNGSVLSCGE 65 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~~-----------------~~P~~v~~~-------~~i~~i~~G~~h~~~lt~~G~vy~wG~ 65 (324)
.+.+|.+|.||....|+... ..|+++... .+|++|+||.+|+++|+++|+||+||.
T Consensus 179 lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~ 258 (413)
T 1a12_A 179 LTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL 258 (413)
T ss_dssp EETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEEC
T ss_pred EcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeC
Confidence 45789999999988765432 367666542 459999999999999999999999999
Q ss_pred CCCCccCCCCCCCcccceeeecccC--ceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCC-CCCCCcccccccc
Q psy15273 66 GSYGRLGQGHSDDLHTPSIISALLG--FIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHG-NSDRQRRPRQIEA 142 (324)
Q Consensus 66 n~~GqLG~~~~~~~~~p~~i~~~~~--~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g-~~~~~~~P~~V~~ 142 (324)
|.+||||.++......|++|..+.+ .+|++|+ ||. +|+++|+++|+||+||.|.+||||.+ .......|+.|..
T Consensus 259 n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia--~G~-~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~ 335 (413)
T 1a12_A 259 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS--GGQ-HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR 335 (413)
T ss_dssp CTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE--ECS-SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS
T ss_pred CCCcCCCCCCCCcccccEEchhccCCCceEEEEe--ccc-ceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc
Confidence 9999999999888899999998887 6799999 996 79999999999999999999999998 4566778998887
Q ss_pred cccceeeeeeeec-ccc----hhhHHHHhcCce----------eeecccccc-cccccccceEEeCCCc
Q psy15273 143 LQGQHAVDVHYRL-HEM----DTAVACIREGMA----------RIIPVPLLS-LMTSSHLEQLVCGEPH 195 (324)
Q Consensus 143 l~~~~iv~v~~~l-~~i----~~ql~a~~~Gf~----------~vip~~~l~-~f~~~el~~l~cG~~~ 195 (324)
+. .++.|+|+. |++ ++++++|+.+.+ ...|..+.. .+....+..|+||..|
T Consensus 336 l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~h 402 (413)
T 1a12_A 336 LP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQH 402 (413)
T ss_dssp SS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSE
T ss_pred cC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCc
Confidence 65 788888886 433 678889877542 122322221 2456689999999999
No 13
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=99.94 E-value=2.5e-27 Score=225.31 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=147.4
Q ss_pred eeecceeeeeee--ecCCC---C----CCCCceeecCCCCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCC---
Q psy15273 10 TFVNKLSYKLIS--FHIGV---N----CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD--- 77 (324)
Q Consensus 10 ~~~~~~~~~~~s--~~~g~---~----~~~~P~~v~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~--- 77 (324)
.+.+|++|.||+ ...|+ . ....|.+|....+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 126 lt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 205 (413)
T 1a12_A 126 LTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 205 (413)
T ss_dssp EETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSS
T ss_pred EcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccc
Confidence 467899999998 33322 1 12358888766779999999999999999999999999999999997532
Q ss_pred --------Ccccceeeecc-----cCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccc
Q psy15273 78 --------DLHTPSIISAL-----LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144 (324)
Q Consensus 78 --------~~~~p~~i~~~-----~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~ 144 (324)
....|+++... ...+|++|+ ||. +|+++|+++|+||+||.|.+||||.+.......|+.|..+.
T Consensus 206 ~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia--~G~-~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~ 282 (413)
T 1a12_A 206 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAF--CGA-YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFK 282 (413)
T ss_dssp SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEE--EET-TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGC
T ss_pred ccccccccccccCceEeeccccccCCccEEEEE--eCC-CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhcc
Confidence 12567666543 456899999 996 79999999999999999999999999888888999998877
Q ss_pred c--ceeeeeeeec-ccc----hhhHHHHhcCceeee----------cccccccccccccceEEeCCCccchhhhhcceee
Q psy15273 145 G--QHAVDVHYRL-HEM----DTAVACIREGMARII----------PVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRY 207 (324)
Q Consensus 145 ~--~~iv~v~~~l-~~i----~~ql~a~~~Gf~~vi----------p~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y 207 (324)
+ .++++|+|+. |++ ++.+++|+.+.+..+ .+..+..+. .+.+|+||..| ++........|
T Consensus 283 ~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~h-s~alt~~G~v~ 359 (413)
T 1a12_A 283 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASV-GYAVTKDGRVF 359 (413)
T ss_dssp CTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSE-EEEEETTSCEE
T ss_pred CCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcce-EEEEeCCCCEE
Confidence 6 6789999886 443 678888877542111 111223333 79999999999 45444555555
Q ss_pred c
Q psy15273 208 R 208 (324)
Q Consensus 208 ~ 208 (324)
.
T Consensus 360 ~ 360 (413)
T 1a12_A 360 A 360 (413)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.8e-27 Score=226.63 Aligned_cols=191 Identities=20% Similarity=0.361 Sum_probs=145.9
Q ss_pred eeecceeeeeeee--c---CCC-----CCCCCceeecCCCC--ceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCC
Q psy15273 10 TFVNKLSYKLISF--H---IGV-----NCSPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD 77 (324)
Q Consensus 10 ~~~~~~~~~~~s~--~---~g~-----~~~~~P~~v~~~~~--i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~ 77 (324)
.+.+|.+|.||.+ . +|. .....|++|..+.+ |++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 163 lt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~ 242 (473)
T 3of7_A 163 LFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVME 242 (473)
T ss_dssp EETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCG
T ss_pred EeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccc
Confidence 4678999999973 2 222 23467999998877 9999999999999999999999999999999998644
Q ss_pred C----cccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCC----CCcccccccccccceee
Q psy15273 78 D----LHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSD----RQRRPRQIEALQGQHAV 149 (324)
Q Consensus 78 ~----~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~----~~~~P~~V~~l~~~~iv 149 (324)
. ...|.++.. .+|++|+ ||. +|++||+++|+||+||.|.+||||.+... ....|+.|..+.+..++
T Consensus 243 ~~~~~~~~p~~~~~---~~v~~Ia--~G~-~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~ 316 (473)
T 3of7_A 243 RFRLKTLDPRPFGL---RHVKYIA--SGE-NHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIR 316 (473)
T ss_dssp GGTTTTCSCEECSC---CSEEEEE--ECS-SEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEE
T ss_pred cccccccCceecCC---cceEEEe--cCC-CeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEE
Confidence 3 446666642 5799999 996 79999999999999999999999998753 34678888888888999
Q ss_pred eeeeec-ccc----hhhHHHHhcCceeee----------------------cccccccccccccceEEeCCCccchhhhh
Q psy15273 150 DVHYRL-HEM----DTAVACIREGMARII----------------------PVPLLSLMTSSHLEQLVCGEPHISLSLLK 202 (324)
Q Consensus 150 ~v~~~l-~~i----~~ql~a~~~Gf~~vi----------------------p~~~l~~f~~~el~~l~cG~~~i~v~~l~ 202 (324)
+|+|+. |++ ++++++|+.+....+ +.+. .+-....+.+|+||..| ++....
T Consensus 317 ~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~-~v~~~~~v~~Ia~G~~h-s~al~~ 394 (473)
T 3of7_A 317 SIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPT-KLNNVPKFKSVAAGSHH-SVAVAQ 394 (473)
T ss_dssp EEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEE-ECCSSCCEEEEEECSSE-EEEEET
T ss_pred EEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCc-ccCCCCceEEEEeCCCe-EEEEeC
Confidence 999986 443 678899987542221 1111 11112278999999999 454455
Q ss_pred cceeec
Q psy15273 203 QIVRYR 208 (324)
Q Consensus 203 ~~~~y~ 208 (324)
...+|.
T Consensus 395 ~G~vy~ 400 (473)
T 3of7_A 395 NGIAYS 400 (473)
T ss_dssp TSCEEE
T ss_pred CCcEEE
Confidence 555554
No 15
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=99.93 E-value=1.8e-26 Score=220.04 Aligned_cols=180 Identities=21% Similarity=0.269 Sum_probs=143.0
Q ss_pred eeecceeeeeeeecCCCCC-------CCCceeecCCCCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCC--cc
Q psy15273 10 TFVNKLSYKLISFHIGVNC-------SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD--LH 80 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~-------~~~P~~v~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~--~~ 80 (324)
.+.+|.+|.||+...|+.. ...|+++..+.+|++|+||..|+++|+++|+||+||.|.+||||++.... ..
T Consensus 39 l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~ 118 (423)
T 3mvd_K 39 RTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSES 118 (423)
T ss_dssp CCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSS
T ss_pred ecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcccc
Confidence 3578999999998876432 25689999999999999999999999999999999999999999997554 67
Q ss_pred cceeeecccCceeEEEEeecCCCCceeeeeecCceEEeec--CCCCCcCCCCCCCCcccccccccccceeeeeeeec-cc
Q psy15273 81 TPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGD--GDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HE 157 (324)
Q Consensus 81 ~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~--n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~ 157 (324)
.|.+|... .+|++|+ ||. +|++||+++|+||+||. |.+||||.+.......|..+ +....+++|+|+. |+
T Consensus 119 ~P~~v~~~--~~i~~va--~G~-~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~G~~hs 191 (423)
T 3mvd_K 119 KPDLIDLP--GKALCIS--AGD-SHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGADHL 191 (423)
T ss_dssp SCEECCCS--SCEEEEE--ECS-SEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES--STTCCEEEEEECSSEE
T ss_pred CCeEEcCC--CCEEEEE--cCc-CeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe--cCCCcEEEEecCCCeE
Confidence 78888643 3799999 996 79999999999999998 99999999887766666554 4667899999987 44
Q ss_pred c----hhhHHHHhcCceeee--------------------cccccccccccccceEEeCCCcc
Q psy15273 158 M----DTAVACIREGMARII--------------------PVPLLSLMTSSHLEQLVCGEPHI 196 (324)
Q Consensus 158 i----~~ql~a~~~Gf~~vi--------------------p~~~l~~f~~~el~~l~cG~~~i 196 (324)
+ ++.+++|+.+....+ .+..+.......+..|.||..|.
T Consensus 192 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~ 254 (423)
T 3mvd_K 192 VILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCT 254 (423)
T ss_dssp EEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEE
T ss_pred EEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEE
Confidence 3 678888876542221 12223344456789999998883
No 16
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=99.93 E-value=4.4e-26 Score=217.31 Aligned_cols=191 Identities=18% Similarity=0.221 Sum_probs=148.1
Q ss_pred eeecceeeeeeeecCCCCC--------CCCceeecCCCCceEEEccCCeeEEEecCCcEEEEeC--CCCCccCCCCCCCc
Q psy15273 10 TFVNKLSYKLISFHIGVNC--------SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGE--GSYGRLGQGHSDDL 79 (324)
Q Consensus 10 ~~~~~~~~~~~s~~~g~~~--------~~~P~~v~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~GqLG~~~~~~~ 79 (324)
.+.+|.+|.||....|+.. ...|++|....+|++|+||.+|+++|+++|+||+||. |.+||||.+.....
T Consensus 90 l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~ 169 (423)
T 3mvd_K 90 LTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK 169 (423)
T ss_dssp EETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCE
T ss_pred EeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC
Confidence 4578999999998866522 4689999877889999999999999999999999999 99999999977666
Q ss_pred ccceeeecccCceeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCC-----------CCccccccccccccee
Q psy15273 80 HTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSD-----------RQRRPRQIEALQGQHA 148 (324)
Q Consensus 80 ~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~-----------~~~~P~~V~~l~~~~i 148 (324)
..|.++ +.+.+|++|+ ||. +|++||+++|+||+||.|.+||||.+... ....|..+.......+
T Consensus 170 ~~p~~~--~~~~~i~~va--~G~-~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v 244 (423)
T 3mvd_K 170 RTPIDL--MEGTVCCSIA--SGA-DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244 (423)
T ss_dssp EEEEES--STTCCEEEEE--ECS-SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCE
T ss_pred ceeeEe--cCCCcEEEEe--cCC-CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccE
Confidence 666554 6677999999 996 79999999999999999999999997642 3457887776667778
Q ss_pred eeeeeec-cc-----chhhHHHHhcCceeeecc----------cccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 149 VDVHYRL-HE-----MDTAVACIREGMARIIPV----------PLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 149 v~v~~~l-~~-----i~~ql~a~~~Gf~~vip~----------~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
..|.++. |+ -++.+++|+.+....+.. +.. .....|.+|+||..| ++.......+|.
T Consensus 245 ~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~--~~~~~v~~ia~G~~h-t~alt~~G~v~~ 317 (423)
T 3mvd_K 245 EAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIK--TELKDIRHIAGGQHH-TVILTTDLKCSV 317 (423)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEE--ECCCSEEEEEECSSE-EEEEETTCCEEE
T ss_pred EEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEE--cCCCCeEEEEcccCe-EEEEeCCCcEEE
Confidence 8888875 32 356788887654222211 111 113578999999999 555555666664
No 17
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-26 Score=221.81 Aligned_cols=194 Identities=20% Similarity=0.233 Sum_probs=149.0
Q ss_pred eecceeeeeeeecCCCCCC---------CCceeecCC----CCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCC
Q psy15273 11 FVNKLSYKLISFHIGVNCS---------PVPSKVDSF----TGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD 77 (324)
Q Consensus 11 ~~~~~~~~~~s~~~g~~~~---------~~P~~v~~~----~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~ 77 (324)
+.++.+|.||+...|+... ..|+++..+ .+|++|+||..|++||+++|+||+||.|.+||||.+...
T Consensus 26 ~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~ 105 (473)
T 3of7_A 26 VQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSN 105 (473)
T ss_dssp SSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC-
T ss_pred CCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcc
Confidence 3678999999988665322 457777665 359999999999999999999999999999999998754
Q ss_pred C-----------------------cccceeeec--cc----CceeEEEEeecCCCCceeeeeecCceEEeec--CCCCCc
Q psy15273 78 D-----------------------LHTPSIISA--LL----GFIIIKVATSCGSDGHSLGLAESGEVFSWGD--GDFGKL 126 (324)
Q Consensus 78 ~-----------------------~~~p~~i~~--~~----~~~i~~v~~~cG~~~hs~~lt~~G~vy~wG~--n~~GqL 126 (324)
. ...|++|.. +. +.+|++|+ ||. +|++||+++|+||+||. |.+|||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va--~G~-~hs~alt~~G~vy~wG~n~~~~GqL 182 (473)
T 3of7_A 106 AKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLA--ATD-NMSCALFSNGEVYAWGTFRCNEGIL 182 (473)
T ss_dssp --------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEE--ECS-SEEEEEETTSCEEEEECEEETTEEE
T ss_pred cccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEE--ccC-CEEEEEeCCCeEEEeeCCcCCCCcc
Confidence 4 567888876 53 67999999 996 79999999999999998 689999
Q ss_pred CCCCC--CCCcccccccccccceeeeeeeec-ccc----hhhHHHHhcCceeeecccc----------cccccccccceE
Q psy15273 127 GHGNS--DRQRRPRQIEALQGQHAVDVHYRL-HEM----DTAVACIREGMARIIPVPL----------LSLMTSSHLEQL 189 (324)
Q Consensus 127 G~g~~--~~~~~P~~V~~l~~~~iv~v~~~l-~~i----~~ql~a~~~Gf~~vip~~~----------l~~f~~~el~~l 189 (324)
|.+.. .....|..|..+.+.+|++|+|+. |++ ++.+++|+.+....+.... ...+....|.+|
T Consensus 183 G~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~I 262 (473)
T 3of7_A 183 GFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYI 262 (473)
T ss_dssp ESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEE
T ss_pred CCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEE
Confidence 98554 456789999888888899999986 433 6789999876533222110 011122578999
Q ss_pred EeCCCccchhhhhcceeec
Q psy15273 190 VCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 190 ~cG~~~i~v~~l~~~~~y~ 208 (324)
+||..| ++.......+|.
T Consensus 263 a~G~~h-s~alt~~G~v~~ 280 (473)
T 3of7_A 263 ASGENH-CFALTKDNKLVS 280 (473)
T ss_dssp EECSSE-EEEEETTSCEEE
T ss_pred ecCCCe-EEEEecCCCEEE
Confidence 999999 555555666664
No 18
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.89 E-value=4.5e-23 Score=186.29 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=122.3
Q ss_pred cceeeeeeeecCCCCCCCCceeecCCCCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCce
Q psy15273 13 NKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFI 92 (324)
Q Consensus 13 ~~~~~~~~s~~~g~~~~~~P~~v~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~ 92 (324)
+|.+|.||....|+... |. ....+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++. .+
T Consensus 41 ~G~v~~wG~n~~Gqlg~--p~--~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~~----~~ 103 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM--PA--ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEAR----SG 103 (282)
T ss_dssp TTEEEEEECCSSSTTSC--CG--GGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGGS----SS
T ss_pred CCEEEEEeCCCCCCCCC--Cc--cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------CcccC----CC
Confidence 89999999999887663 33 23457999999999999996 99999999999999995 44442 37
Q ss_pred eEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc---hhhHHHHhcC
Q psy15273 93 IIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM---DTAVACIREG 168 (324)
Q Consensus 93 i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i---~~ql~a~~~G 168 (324)
|++|+ ||. +|+++|+ +|+||+||.|.+||||.. .. ....+++++++. |++ ++++++|+.+
T Consensus 104 v~~ia--~G~-~hs~al~-~G~v~~wG~n~~gqlg~~--------~~----~~~~i~~i~~G~~~~~~l~~G~v~~wG~n 167 (282)
T 3qhy_B 104 VDAIA--AGA-WASYALK-DGKVIAWGDDSDGQTTVP--------AE----AQSGVTALDGGVYTALAVKNGGVIAWGDN 167 (282)
T ss_dssp EEEEE--EET-TEEEEEE-TTEEEEEECCTTSTTSCC--------GG----GGSSEEEEEECSSEEEEEETTEEEEEECC
T ss_pred eEEEE--CcC-CEEEEEe-CCeEEEecCCCCCcCCCC--------cc----CCCCeEEEEcccCEEEEEECCEEEEecCC
Confidence 99999 996 7999999 999999999999999852 11 123467777764 322 7888888887
Q ss_pred ceeeecccccccccccccceEEeCCCccchhhhhcceeec
Q psy15273 169 MARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208 (324)
Q Consensus 169 f~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~ 208 (324)
....+..+.. ....+.+|+||..| ++.. ++...|.
T Consensus 168 ~~gqlg~p~~---~~~~v~~i~~G~~h-s~al-~~G~v~~ 202 (282)
T 3qhy_B 168 YFGQTTVPAE---AQSGVDDVAGGIFH-SLAL-KDGKVIA 202 (282)
T ss_dssp TTSTTSCCGG---GGSSEEEEEECSSE-EEEE-ETTEEEE
T ss_pred CCCCCCCcee---cCCCeEEEEecCCE-EEEE-ECCeEEE
Confidence 6555543322 24579999999999 4544 6778886
No 19
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.86 E-value=7.6e-22 Score=178.24 Aligned_cols=163 Identities=21% Similarity=0.281 Sum_probs=123.8
Q ss_pred cceeeeeeeecCCCCCCCCceeecCCCCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCce
Q psy15273 13 NKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFI 92 (324)
Q Consensus 13 ~~~~~~~~s~~~g~~~~~~P~~v~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~ 92 (324)
+|.+|.||....|+.. +|.++. .+|++|+||.+|+++|+ +|+||+||.|.+||||.. .+ ...+
T Consensus 80 ~G~v~~wG~n~~Gqlg--~P~~~~--~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~~----~~~~ 142 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTT--VPAEAR--SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------AE----AQSG 142 (282)
T ss_dssp TTEEEEEECCTTSTTC--CCGGGS--SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------GG----GGSS
T ss_pred CCEEEEeeCCCCCCCC--CCcccC--CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------cc----CCCC
Confidence 8999999999988765 455553 47999999999999999 999999999999999842 11 1246
Q ss_pred eEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCCCCCCCcccccccccccceeeeeeeec-ccc---hhhHHHHhcC
Q psy15273 93 IIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRL-HEM---DTAVACIREG 168 (324)
Q Consensus 93 i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~iv~v~~~l-~~i---~~ql~a~~~G 168 (324)
|++|+ ||. .|+++|+ +|+||+||.|.+||||. |..+ ..++++|+|+. |++ ++++++|+.+
T Consensus 143 i~~i~--~G~-~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al~~G~v~~wG~n 206 (282)
T 3qhy_B 143 VTALD--GGV-YTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLALKDGKVIAWGDN 206 (282)
T ss_dssp EEEEE--ECS-SEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEEETTEEEEEECC
T ss_pred eEEEE--ccc-CEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEEECCeEEEEECC
Confidence 89999 996 7999999 89999999999999984 3333 24577777774 332 6888888887
Q ss_pred ceeeecccccccccccccceEEeCCCccchhhhhcceeec-CCCCC
Q psy15273 169 MARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR-DLDEN 213 (324)
Q Consensus 169 f~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~-g~~~~ 213 (324)
....++.+.. ....+.+|.||..| ++... +...|. |....
T Consensus 207 ~~gqlg~p~~---~~~~v~~i~~G~~h-~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 207 RYKQTTVPTE---ALSGVSAIASGEWY-SLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp TTSTTCCCGG---GGSSCCEEEECSSC-EEEEE-TTEEEEESTTCC
T ss_pred CCCCCCCCcc---cCCCceEEEcCCCE-EEEEE-CCEEEEecCCCC
Confidence 6655544321 12469999999999 44444 777776 44433
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.25 E-value=0.036 Score=47.86 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=56.5
Q ss_pred CCceEEEccCCeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEEeecCCCCceeeeeecCceEEe
Q psy15273 39 TGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSW 118 (324)
Q Consensus 39 ~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~~~cG~~~hs~~lt~~G~vy~w 118 (324)
..|.+|+.-..|.+++--+++++++|+++.|||-..... - +..+++ +|. .+|+-+..-..|--|
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta---g----------Pfla~~--AG~-~fTVTVn~~nyv~FW 372 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA---G----------PYIQLA--AGH-NFTVTVNTLNQVMFW 372 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG---C----------CEEEEE--ECS-SEEEEEETTCCEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCc---c----------hHHhHh--ccC-CeEEEEeceeeEEEe
Confidence 447889988999999999999999999999999664311 1 345666 886 699999999999999
Q ss_pred ecCCCCCc
Q psy15273 119 GDGDFGKL 126 (324)
Q Consensus 119 G~n~~GqL 126 (324)
|+.-..-|
T Consensus 373 GDSPDNSL 380 (400)
T 4gbf_A 373 GDSPDNSL 380 (400)
T ss_dssp ECCTTSTT
T ss_pred cCCCCcce
Confidence 98654443
No 21
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=65.11 E-value=3 Score=36.04 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=28.2
Q ss_pred eeEEEEeecCCCCceeeeeecCceEEeecCCCCCcCCC
Q psy15273 92 IIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHG 129 (324)
Q Consensus 92 ~i~~v~~~cG~~~hs~~lt~~G~vy~wG~n~~GqLG~g 129 (324)
.|.+| +|...|++++--++++++||+++.||+-..
T Consensus 310 ~i~~V---sG~y~H~vvi~gd~el~sFG~~sNGQ~~ip 344 (400)
T 4gbf_A 310 PIGGV---SGLYTHYTVMYGDGQIAFFGNNDNGQCDVD 344 (400)
T ss_dssp CCCCC---BCSSSEEEC-CTTTCCCEEECCTTSTTCCC
T ss_pred ccccc---cccccceEEEecCceeEEeccCCCCceecC
Confidence 45556 566689999999999999999999998664
No 22
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=39.65 E-value=56 Score=31.63 Aligned_cols=74 Identities=28% Similarity=0.230 Sum_probs=39.4
Q ss_pred CeeEEEecCCcEEEEeCCCCCccCCCCCCCcccceeeecccCceeEEEE-eecCCCCceee-eeecCceEEeecCCCC
Q psy15273 49 NCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVA-TSCGSDGHSLG-LAESGEVFSWGDGDFG 124 (324)
Q Consensus 49 ~h~~~lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~i~~~~~~~i~~v~-~~cG~~~hs~~-lt~~G~vy~wG~n~~G 124 (324)
.|++++..+|+||..|-...++- .+.......+.... +...+...+. ......+|+++ +..+|+||..|.+..|
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~ 533 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG 533 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCT
T ss_pred cCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCC
Confidence 58888888999999997554431 11111111122111 1111222221 01223358755 4579999999987655
No 23
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=27.05 E-value=39 Score=17.29 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.6
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q psy15273 279 RLPNYSSKEVMAEKLRYAI 297 (324)
Q Consensus 279 ~LP~Y~s~~~l~~kL~~Ai 297 (324)
.+|.|.=.++|.+-|+.|.
T Consensus 3 ripsydfadelakllrqa~ 21 (26)
T 1sn9_A 3 RIPSYDFADELAKLLRQAX 21 (26)
T ss_dssp CBTTBCHHHHHHHHHHHHT
T ss_pred CCCccchHHHHHHHHHHhh
Confidence 6899999999999898875
No 24
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=25.38 E-value=29 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=17.0
Q ss_pred HHHHHHHHh--cCCHHHHhheee
Q psy15273 217 VRWMWEVLD--SFSHNERVLFMR 237 (324)
Q Consensus 217 i~~fw~~~~--~ls~~~~~~fL~ 237 (324)
-.-|.++|+ .|++++|-.|++
T Consensus 6 QnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 6 QRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHhHHH
Confidence 356889998 699999988775
No 25
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.63 E-value=87 Score=22.45 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCceeccccceeecCCCCCHHHHHHHHHHHHHhCc
Q psy15273 267 GLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK 301 (324)
Q Consensus 267 ~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~ 301 (324)
..|-.+||+..--||.=.+.+.|+++|......+-
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG 38 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG 38 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC
Confidence 46778899999999999999999999999888773
No 26
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.21 E-value=23 Score=23.21 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=15.2
Q ss_pred HHHHHHHHh-CcccccccccccccccCCCCCC
Q psy15273 291 EKLRYAINN-CKSIDMDNYMLARNNEFASTDD 321 (324)
Q Consensus 291 ~kL~~Ai~~-~~~~~~d~~~~~~~~~~~~~~~ 321 (324)
+-|.+|+.+ +++.|+. -+||++||
T Consensus 14 elleialkfisqgldle-------vefdstdd 38 (83)
T 2ln3_A 14 ELLEIALKFISQGLDLE-------VEFDSTDD 38 (83)
T ss_dssp HHHHHHHHHHHHTCEEE-------EEECCCCH
T ss_pred HHHHHHHHHHhcCCceE-------EEecCCCh
Confidence 345567665 5666665 46777776
Done!