RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15273
(324 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 181 bits (462), Expect = 1e-54
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Query: 151 VHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
V YRL+ ++ V R+G + +IP LLSL T LE L+CG I L LK+ Y+
Sbjct: 196 VDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKG 255
Query: 210 LDE-NHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLSQRFQVMKVDRCIDG 267
+ ++W WEVL+SF++ ER F++FV+G SRLP ADL+ +F + +V D
Sbjct: 256 GYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGSPDDR 315
Query: 268 LPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSID 304
LPTA TCF L+LP YSSKE++ EKL YAIN
Sbjct: 316 LPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 175 bits (445), Expect = 2e-52
Identities = 64/155 (41%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 151 VHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
+ YRL ++ + REG + +IP LL L LE L+CG P I + LK Y+
Sbjct: 173 IEYRLNKGIEKQLEAFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKG 232
Query: 210 -LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLSQRFQVMKVDRCIDG 267
N ++W WEV++SF++ ER ++FV+G SRLP A LS +F + K +
Sbjct: 233 GYSANSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSDDER 292
Query: 268 LPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKS 302
LPTA TCF +L+LP YSSKE++ EKL AIN K
Sbjct: 293 LPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKG 327
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 164 bits (416), Expect = 2e-48
Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
Query: 151 VHYRLHE-MDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
V YRL+E + + REG +IP LLSL T LE L+CG P I + LK+ Y
Sbjct: 142 VDYRLNESIKKQLEAFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDG 201
Query: 210 -LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLSQRFQVMKVDRCIDG 267
+N ++W WEVL+ F+ ER F++FV+G SRLP L + + + D D
Sbjct: 202 GYSKNSPTIKWFWEVLEEFTQEERRKFLKFVTGSSRLPLGGFKKL--KITIQRKD-DDDR 258
Query: 268 LPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNC 300
LPTA TCF +L+LP YSSKE++ EKL AI
Sbjct: 259 LPTAHTCFNRLKLPPYSSKEILKEKLLIAIEEG 291
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 111 bits (280), Expect = 3e-27
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Query: 167 EGMARIIPVPLLSLMTSSHLEQLVCGEP-HISLSLLKQIVRYRDLDENHILVRWMWEVLD 225
G + IIP LL + S LE L+ G P I + K Y E+ ++ W WE++
Sbjct: 726 SGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTEDSPIIVWFWEIIS 785
Query: 226 SFSHNERVLFMRFVSGRSRLPAN------LADLSQRFQVMKVDRCIDGLPTAQTCFFQLR 279
F ER ++FV+G SR+P N +D ++F + K D LP+A TCF +L+
Sbjct: 786 EFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLK 845
Query: 280 LPNYSSKEVMAEKLRYAINNC 300
LP YSSKE + KL AIN
Sbjct: 846 LPEYSSKEKLRSKLLTAINEG 866
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 54.5 bits (132), Expect = 3e-10
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 112 SGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDV 151
G V++WG ++G+LG G+ + P+ +E L G V V
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQV 40
Score = 52.1 bits (126), Expect = 2e-09
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 57 NGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGL 109
+G V + G YG+LG G +D+ P ++ L G +++VA CG+ H++ L
Sbjct: 1 DGRVYTWGRNEYGQLGLGDEEDVLVPQLVEGLSGVRVVQVA--CGAS-HTVAL 50
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 52.5 bits (126), Expect = 1e-07
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 43 QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQG--HSDDLHTPSIISALLGFIIIKVATSC 100
+ G++ + +L+ +G++ + G G G+LG + D+ TP+ +S + + +C
Sbjct: 344 SISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQV----AC 399
Query: 101 GSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYR 154
G+ H++ + G V+SWG G+ G LG+G + L Q + H
Sbjct: 400 GTH-HNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPT---LIRQPLLSGHNI 449
Score = 50.2 bits (120), Expect = 6e-07
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 10 TFVNKLSYKLI----SFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGE 65
++ +L + P KV Q+ G + L G V G
Sbjct: 199 SWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK-KAIVQLAAGADHLIALTNEGKVYGWGS 257
Query: 66 GSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGK 125
G+LG+ S+ L ++ IK +CG D HSL L E GE+++WG FG+
Sbjct: 258 NQKGQLGRPTSERLKLVVLVGDPFAIRNIK-YVACGKD-HSLALDEDGEIYAWGVNIFGQ 315
Query: 126 LGHGNSDR 133
LG G+
Sbjct: 316 LGAGSDGE 323
Score = 49.5 bits (118), Expect = 1e-06
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 58 GSVLSCGEGSYGRLGQGH-SDDLHTPSIISALL--GFIIIKVATSCGSDGHSLGLAESGE 114
SV S G LG G+ + P + IIK+A CG + HSLGL G
Sbjct: 68 ASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIA--CGGN-HSLGLDHDGN 124
Query: 115 VFSWGDGDFGKLG 127
++SWGD D G LG
Sbjct: 125 LYSWGDNDDGALG 137
Score = 49.1 bits (117), Expect = 2e-06
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 32 PSKVDSFTGAQ------QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD------L 79
P KV + A+ ++ CG + +L +G V S G G LGQG +
Sbjct: 163 PFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ 222
Query: 80 HTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRP 137
TP + + + + G+D H + L G+V+ WG G+LG S+R +
Sbjct: 223 FTP-LKVPKKAIVQL----AAGAD-HLIALTNEGKVYGWGSNQKGQLGRPTSERLKLV 274
Score = 44.1 bits (104), Expect = 7e-05
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 44 VVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHT----PSIISALLGFIIIKVATS 99
V CG++ + L +G + + G +G+LG G ++ P+ L G I + S
Sbjct: 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTI--CSIS 346
Query: 100 CGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRP 137
G HSL L + G ++++G GD G+LG
Sbjct: 347 AGES-HSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS 383
Score = 37.9 bits (88), Expect = 0.006
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 30 PVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD 78
P+K+ +QV CG + +GSV S G G +G LG G +
Sbjct: 383 STPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEA 431
Score = 37.9 bits (88), Expect = 0.006
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 29 SPVPSKVDSFTGAQ--QVVCGQNCTFVLQVNGSVLSCGEGSYGRLG---------QGHSD 77
P + A ++ CG N + L +G++ S G+ G LG Q +
Sbjct: 92 RPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDI 151
Query: 78 DLH-------TPSII----SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKL 126
TP + SA ++K+A CG + S+ L G V+SWG G+L
Sbjct: 152 IDFDDYELESTPFKVPGGSSAKSHLRVVKLA--CGWE-ISVILTADGRVYSWGTFRCGEL 208
Query: 127 GHGN-SDRQRRPRQ 139
G G+ + Q+ Q
Sbjct: 209 GQGSYKNSQKTSIQ 222
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 36.7 bits (86), Expect = 5e-04
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 96 VATSCGSDGHSLGLAESGEVFSWGDGDFG 124
V+ + G H+L L G V+ WGD +G
Sbjct: 2 VSIAAGDY-HTLALTSDGTVYCWGDNSYG 29
Score = 27.5 bits (62), Expect = 0.77
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 43 QVVCGQNCTFVLQVNGSVLSCGEGSYGR 70
+ G T L +G+V G+ SYG+
Sbjct: 3 SIAAGDYHTLALTSDGTVYCWGDNSYGQ 30
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 35.1 bits (81), Expect = 0.056
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 253 SQRFQVMKVDRCIDGLPTAQTCFFQLRLP 281
S+RF KVDRC+ GL Q L++P
Sbjct: 655 SKRFLTTKVDRCVTGLVAQQQTVGPLQIP 683
>gnl|CDD|222750 pfam14433, SUKH-3, SUKH-3 immunity protein. This family belongs to
the SUKH superfamily and functions as immunity proteins
in bacterial toxin systems.
Length = 142
Score = 31.2 bits (71), Expect = 0.37
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 83 SIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLG 127
+ LG + + + +L + ESG V+ GDG LG
Sbjct: 82 AEYEEELGTKLFPIG-ELDNGHSTLLVDESGRVYGLGDGGLWLLG 125
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional.
Length = 482
Score = 31.3 bits (71), Expect = 0.74
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 110 AESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVD 150
A GEVF W GHG+ + ++ AL VD
Sbjct: 120 ARGGEVFLWSGPTPMMPGHGHGHMEHSNWRMIALPVGPLVD 160
>gnl|CDD|225821 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
metabolism [Transcription / Amino acid transport and
metabolism].
Length = 511
Score = 30.5 bits (69), Expect = 1.5
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 144 QGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQ 203
+G+ D+ YRL+ + + +RE I+P L L ++L P ++ LL
Sbjct: 351 KGKFREDLFYRLNVLTLNLPPLRERPQDIMP--LAELFVQQFSDELGVPRPKLAADLLTV 408
Query: 204 IVRYR 208
+ RY
Sbjct: 409 LTRYA 413
>gnl|CDD|192965 pfam12243, CTK3, CTD kinase subunit gamma CTK3. The C-terminal
domain kinase (CTDK-1), is a three-subunit complex
comprised of Ctk1, Ctk2, and Ctk3, that plays a key role
in regulation of transcription and translation and in
coordinating these two processes. Both Ctk2 and Ctk3 are
regulated at the level of protein turnover, and are
unstable proteins processed through a
ubiquitin-proteasome pathway. Their physical interaction
is required to protect both subunits from degradation,
and both Ctk2 and Ctk3 are required for Ctk1 CTD kinase
activation. The mammalian P-TEFb is mirrored by the
combined complexes in yeast of the CTDK1 and the Bur1/2.
Length = 139
Score = 28.9 bits (65), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 204 IVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFV 239
++Y D++E+ L + E L+ S N R M F+
Sbjct: 31 ALKYSDMEED--LHSCILEQLEDGSLNTRANIMYFI 64
>gnl|CDD|235284 PRK04334, PRK04334, hypothetical protein; Provisional.
Length = 251
Score = 29.9 bits (68), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 82 PSIISALLGFIIIK------VATSCGSDGHS--LGLAESGEVFS 117
S +S LGF I + TS G+ GHS G+A++ VF+
Sbjct: 135 DSPLSGRLGFRIKPGASPLGICTSSGTVGHSLSFGIADAVTVFA 178
>gnl|CDD|131662 TIGR02613, mob_myst_B, mobile mystery protein B. Members of this
protein family, which we designate mobile mystery
protein B, are found in mobization-related contexts more
often than not, including within a CRISPR-associated
gene region in Geobacter sulfurreducens PCA, and on
plasmids in Agrobacterium tumefaciens and Coxiella
burnetii, always together with mobile mystery protein A
(TIGR02612), a member of the family of helix-turn-helix
DNA binding proteins (pfam01381). This protein is
encoded by the downstream member of the gene pair and
belongs to the Fic protein family (pfam02661), where Fic
(filamentation induced by cAMP) is a regulator of cell
division. The characteristics of having a two-gene
operon in a varied context and often on plasmids, with
one member affecting cell division and the other able to
bind DNA, suggests similarity to addiction modules.
Length = 186
Score = 29.4 bits (66), Expect = 1.8
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 9/37 (24%)
Query: 116 FSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVH 152
F+WG G +G R I AL+ A D H
Sbjct: 149 FTWGSGSLALVGD------LRKEYIAALK---AADRH 176
>gnl|CDD|205018 pfam12683, DUF3798, Protein of unknown function (DUF3798). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 247 and 417 amino
acids in length. Most of the proteins in this family
have an N-terminal lipoprotein attachment site. These
proteins have distant similarity to periplasmic ligand
binding families such as pfam02608, which suggests that
this family have a similar role.
Length = 275
Score = 29.2 bits (66), Expect = 2.6
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 21 SFHIGVNCSPVPSKVDSFTGAQQVV 45
+ IG+ V D + A+ ++
Sbjct: 2 DYKIGIVTGTVSQSEDEYRAAEALL 26
>gnl|CDD|188163 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of
phosphoribosylformylglycinamidine synthase, also called
FGAM synthase, an enzyme of purine de novo biosynthesis.
This form is found mostly in eukaryotes and
Proteobacteria. In Bacillus subtilis PurL (FGAM synthase
II) and PurQ (FGAM synthase I), homologous to different
parts of this model, perform the equivalent function;
the unrelated small protein PurS is also required and
may be a third subunit [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 1310
Score = 29.4 bits (66), Expect = 3.0
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 12/51 (23%)
Query: 231 ERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLP 281
ERVL RLPA +A S+RF + DR + GL + P
Sbjct: 653 ERVL---------RLPA-VA--SKRFLITIGDRSVGGLVARDQMVGPWQTP 691
>gnl|CDD|183384 PRK11924, PRK11924, RNA polymerase sigma factor; Provisional.
Length = 179
Score = 28.8 bits (65), Expect = 3.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 261 VDRCIDGLPTAQTCFFQLR-LPNYSSKEVMAEKLRYAINNCKS 302
+DRC+D LP Q F LR + S +E+ AE L + KS
Sbjct: 119 IDRCLDALPVKQREVFLLRYVEGLSYREI-AEILGVPVGTVKS 160
>gnl|CDD|188498 TIGR03983, cas1_MYXAN, CRISPR-associated endonuclease Cas1, subtype
MYXAN. Members of this protein are the Cas1
endonuclease, or Cas1 domain in Cas4/Cas1 fusion
proteins, of the MYXAN subtype of CRISPR/Cas systems.
These systems typically feature repeats and spacers each
about 36 base pairs in length. Species with this type of
CRISPR system include Myxococcus xanthus, Cyanothece
sp., Leptospira interrogans, Sorangium cellulosum,
Anabaena variabilis ATCC 29413, etc.
Length = 347
Score = 29.3 bits (66), Expect = 3.0
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 116 FSWGDGDFGKLGHGNSDRQRRPRQIEAL-QGQHAVDVHYRLHEMDTAVACIREGMAR 171
S G G + QRR RQ AL Q + + +L VA EG R
Sbjct: 76 VSGGGRYIGSFDGRSGSVQRRIRQFRALTQEDFCLGLARKL------VAAKGEGQLR 126
>gnl|CDD|225823 COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA
replication, recombination, and repair].
Length = 299
Score = 28.9 bits (65), Expect = 4.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 227 FSHNERVLFMRFVSGRSRLP---ANLADLSQRFQV---MKVDRCIDGLPTAQTCFFQLRL 280
+H +RVLF + + L A +AD F + + RC DG+ FFQ
Sbjct: 11 ITHPDRVLFPKTGITKEDLARYYAAVADRMLPFLAGRPVSLVRCPDGIG--GEAFFQKHA 68
Query: 281 PNYSSKEV 288
P + V
Sbjct: 69 PRGAPPWV 76
>gnl|CDD|234008 TIGR02778, ligD_pol, DNA polymerase LigD, polymerase domain. DNA
repair of double-stranded breaks by non-homologous end
joining (NHEJ) is accomplished by a two-protein system
that is present in a minority of prokaryotes. One
component is the Ku protein (see TIGR02772), which binds
DNA ends. The other is a DNA ligase, a protein that is a
multidomain polypeptide in most of those bacteria that
have NHEJ, a permuted polypeptide in Mycobacterium
tuberculosis and a few other species, and the product of
tandem genes in some other bacteria. This model
represents the polymerase domain.
Length = 245
Score = 27.6 bits (62), Expect = 7.1
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 228 SHNERVLFMRFVSGRSRL----------PANLADLSQRFQVMKVDRCIDGLPTAQTCFFQ 277
++ ++VL+ G ++L P L L R + + RC DG CFFQ
Sbjct: 4 TNPDKVLWPA--EGITKLDLADYYAAVAPFMLPHLRGR--PLSLLRCPDG--IGGECFFQ 57
Query: 278 LRLPNY 283
LP
Sbjct: 58 KHLPQG 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,349,638
Number of extensions: 1567136
Number of successful extensions: 1097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 32
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)