RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15273
(324 letters)
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 143 bits (363), Expect = 6e-40
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
VP+ ++ Q++ G+ F + +G + + G G+ GRLG G ++ + TP+++
Sbjct: 41 VKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLE 100
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
++ I KVA + G H L L+ GEV+SWG+ + GKLGHGN RPR IE+L+G
Sbjct: 101 SIQHVFIKKVAVNSGGK-HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI 159
Query: 147 HAVDV 151
VDV
Sbjct: 160 EVVDV 164
Score = 125 bits (316), Expect = 3e-33
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 27 NCSPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSI 84
+ VP K+DS TG +V CG + L +G+V + G+G Y RLG G D + P
Sbjct: 251 DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ 310
Query: 85 ISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144
+ L G +I +A GS H + E GEV++WGD D G+LG G ++ +RPR + ALQ
Sbjct: 311 VQGLQGKKVIAIA--TGSL-HCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQ 367
Query: 145 GQHAVDV 151
G+ V
Sbjct: 368 GKKVNRV 374
Score = 124 bits (313), Expect = 8e-33
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 27 NCSPVPSKVDSFTGAQ--QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSI 84
+ P ++S G + V G + + G + + G+G YGRLG S+D P +
Sbjct: 145 SPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKL 204
Query: 85 ISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144
+ AL G ++ +A G +L L + V+SWGDGD+GKLG G SD + P +I++L
Sbjct: 205 VEALQGHRVVDIACGSGDA-QTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263
Query: 145 GQHAVDV 151
G V V
Sbjct: 264 GLGVVKV 270
Score = 121 bits (307), Expect = 6e-32
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 29 SPVPSKVDSFTGAQ----QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSI 84
P+ ++S V G L G V S GE G+LG G+ P +
Sbjct: 93 VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRV 152
Query: 85 ISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144
I +L G ++ VA G HS + +G++++WG G +G+LGH +S+ Q +P+ +EALQ
Sbjct: 153 IESLRGIEVVDVA--AGGA-HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209
Query: 145 GQHAVDV 151
G VD+
Sbjct: 210 GHRVVDI 216
Score = 118 bits (298), Expect = 1e-30
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 27 NCSPVPSKVDSFTG--AQQVVC--GQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTP 82
P V++ G + C G T L + +V S G+G YG+LG+G SD P
Sbjct: 197 EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256
Query: 83 SIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEA 142
I +L G ++KV CGS S+ L +SG V++WG GD+ +LGHG+ D RRPRQ++
Sbjct: 257 MKIDSLTGLGVVKVE--CGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG 313
Query: 143 LQGQHAVDV 151
LQG+ + +
Sbjct: 314 LQGKKVIAI 322
Score = 113 bits (285), Expect = 7e-29
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 42 QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCG 101
Q +G++ G G+LG + P+ AL +++ G
Sbjct: 4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLI--GG 61
Query: 102 SDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTA 161
+ + G++++ G G G+LG G ++ P +E++Q V A
Sbjct: 62 -EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKV---------A 111
Query: 162 VAC 164
V
Sbjct: 112 VNS 114
Score = 72.3 bits (178), Expect = 2e-14
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P +V G + G +G V + G+ G+LG G ++ + P +++
Sbjct: 305 VRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA 364
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAES 112
AL G + +VA CGS H+L + S
Sbjct: 365 ALQGKKVNRVA--CGSA-HTLAWSTS 387
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 143 bits (363), Expect = 8e-40
Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 151 VHYRLHE-MDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
R+ + +A EG IIP L+S+ T LE L+ G P I + LK Y
Sbjct: 242 CQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHK 301
Query: 210 LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLS-----QRFQVMKVDR 263
N I ++W W L SF +R F++FV+G S++P A L Q+FQ+ + DR
Sbjct: 302 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR 361
Query: 264 CIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNC 300
D LP+A TCF QL LP Y S E + L AI
Sbjct: 362 STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEA 398
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 142 bits (360), Expect = 1e-39
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 151 VHYRLHEMDTAVA----CIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVR 206
V++R + +++G +IP LL LE ++CG I ++ K R
Sbjct: 218 VNWRFL---RGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTR 274
Query: 207 YRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLS-----QRFQVMK 260
+ + +V+W W+ ++ F R ++FV+G SR+P L + F + +
Sbjct: 275 LKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQ 334
Query: 261 VDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK 301
+D C + LP A TCF ++ +P Y S E + EKL AI
Sbjct: 335 IDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETC 375
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 141 bits (359), Expect = 1e-39
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 151 VHYRLHE-MDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
+R + +G ++P+ L LE ++CG + L+ ++ YR
Sbjct: 218 TEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH 277
Query: 210 LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLS-----QRFQVMKVDR 263
N + W W+ + + R+ ++FV+G RLP A+L Q+F + KV
Sbjct: 278 YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG- 336
Query: 264 CIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK 301
LP + TCF +L LP Y S E + EKL +AI +
Sbjct: 337 KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 139 bits (353), Expect = 3e-38
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 151 VHYRLHEMDTAVA----CIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVR 206
+R+ V +G +IP L+++ LE L+ G I + K+
Sbjct: 268 TQWRIV---DRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTD 324
Query: 207 YRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLS-----QRFQVMK 260
YR E+ +++W W+ + + + +R ++F +G SR+P N DL +RF + K
Sbjct: 325 YRGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEK 384
Query: 261 VDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK 301
+ LP + TCF ++ LP Y + M +KL A+
Sbjct: 385 AGE-VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETI 424
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 137 bits (347), Expect = 1e-37
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 9/157 (5%)
Query: 151 VHYRLHE-MDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
+ +R + + EG ++P+ L+ + + LE L+CG + ++ +Q Y++
Sbjct: 237 IQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKN 296
Query: 210 -LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLS-----QRFQVMKVD 262
NH +++W W+ + +R+ ++FV+G SR+P N A+L Q F + +
Sbjct: 297 GYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWG 356
Query: 263 RCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINN 299
+ LP A TCF +L LP Y + E + EKL A+ N
Sbjct: 357 S-PEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN 392
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 133 bits (336), Expect = 2e-36
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 151 VHYRLHEMDTAVA----CIREGMARIIPVPLLSLMTSSH-LEQLVCGEPHISLSLLKQIV 205
Y ++ +V R G + L + +E L+CG ++ L++
Sbjct: 201 SDYI---LNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETT 257
Query: 206 RYRD-LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLSQRFQVMKVDR 263
Y + +L+R WE++ SF+ ++ LF++F +G R P L L + + K
Sbjct: 258 EYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGP 315
Query: 264 CIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK 301
+ LPT+ TCF L LP YSSKE + E+L AI K
Sbjct: 316 DTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAK 353
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold,
ubiquitin ligase; 1.97A {Homo sapiens}
Length = 118
Score = 122 bits (309), Expect = 4e-35
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 194 PHISLSLLKQIVRYRDL-----DENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN 248
P S+ +L + D ++ RW W +++ S ER + F + LPA+
Sbjct: 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPAS 61
Query: 249 LADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAIN 298
+ LPTA TC +L +P YSSK+++ +KL AI
Sbjct: 62 EEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIK 111
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 130 bits (330), Expect = 4e-35
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNG-SVLSCGEGSYGRLGQGHSDDLHTPSII 85
P P+++ + G V CG + T +G V S G G +GRLG G+S DL TP I
Sbjct: 56 RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPI 115
Query: 86 SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
AL G I ++A CG D H L + GEV SWG G+LG G+++ P++I+A +G
Sbjct: 116 KALHGIRIKQIA--CG-DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG 172
Query: 146 QHAVDV 151
V
Sbjct: 173 IRIKMV 178
Score = 126 bits (320), Expect = 1e-33
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 27 NCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
+ G + + L V S G G G+LG G ++D +P+ +S
Sbjct: 4 EDMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS 63
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESG-EVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
AL G I+ V CG+D H++ ++SG EV+SWG GDFG+LGHGNS P I+AL G
Sbjct: 64 ALDGHQIVSVT--CGAD-HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHG 120
Query: 146 QHAVDV 151
+
Sbjct: 121 IRIKQI 126
Score = 125 bits (315), Expect = 5e-33
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 29 SPVPSKVDSFTGAQ--QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
S VP K+ +F G + V G T + +G + G G YG LG G D P ++
Sbjct: 161 SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT 220
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
+ G + VA CG H++ ++ SG ++++G +G+LGHG+ + P ++EAL
Sbjct: 221 STGGEKMSMVA--CGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNS 277
Query: 147 HAVDV 151
+
Sbjct: 278 FISQI 282
Score = 123 bits (310), Expect = 3e-32
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P + + G +Q+ CG + + + G V S G G+LG G ++D P I
Sbjct: 109 LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
A G I VA G++ H+ + E G+++ WG G +G LG G+ + P ++ + G+
Sbjct: 169 AFEGIRIKMVA--AGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE 225
Query: 147 HAVDV 151
V
Sbjct: 226 KMSMV 230
Score = 121 bits (305), Expect = 1e-31
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
VP +V S G V CG T + +G++ + G YG+LG G +D P +
Sbjct: 213 RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLE 272
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
AL I +++ G H++ L G+++ WG FG++G GN+ Q P Q+ Q
Sbjct: 273 ALSNSFISQIS--GGWR-HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQ 329
Query: 147 HAVDV 151
V V
Sbjct: 330 KVVQV 334
Score = 118 bits (299), Expect = 1e-30
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
+P K+++ + Q+ G T L +G + G +G++G G++ D +P +
Sbjct: 265 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
+++V+ CG H+L + E VF+WG G G+LG G S + P+ IEAL
Sbjct: 325 FPDDQKVVQVS--CGW-RHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSVD 381
Query: 147 HA 148
A
Sbjct: 382 GA 383
Score = 77.7 bits (192), Expect = 3e-16
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
P +V QV CG T + +V + G G+ G+LG G S D + P II
Sbjct: 317 QCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE 376
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDG 121
AL V + G + SW
Sbjct: 377 AL------SVDGASGQ-HIESSNIDPSSGKSWVSP 404
Score = 27.2 bits (61), Expect = 8.3
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGS 67
P +++ + GQ+ S S +
Sbjct: 369 RNFPKIIEALSV--DGASGQHIESSNIDPSSGKSWVSPA 405
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 118 bits (298), Expect = 2e-30
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
S V A + G VL +G + S G G LG+ S+D
Sbjct: 65 RKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID 124
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDG--DFGKLGHGNSDRQRRPRQIEALQGQ 146
L + ++ G D HS L E G VF+WG G +G +R P + ++G
Sbjct: 125 LPGKALCIS--AG-DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGT 179
Query: 147 HAVDV 151
+
Sbjct: 180 VCCSI 184
Score = 107 bits (268), Expect = 2e-26
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD-LHTPSIISA 87
+ P K + + GQ+ T +L + G YGRLG G D + P+I+
Sbjct: 285 ALTPIKT-ELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKK 343
Query: 88 LLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIE--ALQG 145
L I V+ CG S + G+++SWG G +LG G+ D + P + QG
Sbjct: 344 LTEKI---VSVGCGEV-CSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQG 399
Query: 146 QHAVDV 151
+H +
Sbjct: 400 KHMLLA 405
Score = 104 bits (262), Expect = 1e-25
Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
P +D A + G + + L +G V + G G + D + + I +
Sbjct: 117 ESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM 176
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
G + +A G+D H + L +G+VF+ G + G+LG + +
Sbjct: 177 EGTVCCSIA--SGAD-HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP 233
Query: 149 VDVHYRLHEMDTAVAC 164
+ + A+
Sbjct: 234 TQLIITRAKPFEAIWA 249
Score = 101 bits (254), Expect = 2e-24
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 27 NCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHS-DDLHTPSII 85
N + + ++ V G+VL CG G G+LG G + S +
Sbjct: 12 NNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPV 71
Query: 86 SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQG 145
+ + + ++ G H+L L +SG+++S+G D G LG S+ +
Sbjct: 72 AGIPD--AVDIS--AGGM-HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP 126
Query: 146 QHAVDV 151
A+ +
Sbjct: 127 GKALCI 132
Score = 97.8 bits (244), Expect = 4e-23
Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 29 SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVL-SCGEGSYGRLGQGHSDDLHTPSII 85
P+++ + + CTF+ + V+ + G ++ +L + I
Sbjct: 230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI 289
Query: 86 SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS-DRQRRPRQIEALQ 144
L I + G H++ L + G ++G+LG G+ D +P ++ L
Sbjct: 290 KTELKDI---RHIAGGQH-HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKL- 344
Query: 145 GQHAVDV 151
+ V V
Sbjct: 345 TEKIVSV 351
Score = 72.8 bits (179), Expect = 2e-14
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 27 NCSPVPSKVDSFTG-AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSII 85
+ P+ V T V CG+ C++ + ++G + S G G +LG G DD P ++
Sbjct: 333 DVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVV 392
Query: 86 S--ALLGFIIIKVATSCGSDGHSLGLAESGE 114
G ++ S G H++ L ++ +
Sbjct: 393 VSKNTQGKHMLLA--SGGGQ-HAIFLVKADK 420
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 116 bits (292), Expect = 1e-29
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
P+ V Q G T L +G V S G G LG+ S +
Sbjct: 49 RKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE 108
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDG--DFGKLGHGNS-DRQRRPRQIEAL 143
L +++V+ G D H+ L + G VF WG + G +G + P Q++
Sbjct: 109 LQEKVVQVS--AG-DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLD 163
Score = 107 bits (269), Expect = 1e-26
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 9/129 (6%)
Query: 25 GVNCSPVPSKVDSFTGAQ-------QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD 77
G+ VP V + CG TF + G V G +Y +LG ++
Sbjct: 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE 270
Query: 78 DLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS-DRQRR 136
P +++ V S G H++ + G+ +S G ++G+LG G + +
Sbjct: 271 SCFIPQNLTSFKNSTKSWVGFSGGQH-HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSI 329
Query: 137 PRQIEALQG 145
P I L
Sbjct: 330 PTLISRLPA 338
Score = 106 bits (267), Expect = 2e-26
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 29 SPVPSKVDSFTGAQ----QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHS-DDLHTPS 83
+P + SF + GQ+ T + G S G YGRLG G ++ P+
Sbjct: 272 CFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPT 331
Query: 84 IISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQI--E 141
+IS L + +CG+ + + G VF+WG G +LG G + P ++ +
Sbjct: 332 LISRLPAVSSV----ACGAS-VGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGK 386
Query: 142 ALQGQHAVDV 151
L+ + + V
Sbjct: 387 QLENRVVLSV 396
Score = 103 bits (259), Expect = 4e-25
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 43 QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHS-DDLHTPSIISALLGFIIIKVATSCG 101
+ G VL+ G+G G+LG G + + P+++S +++ G
Sbjct: 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAE--AG 67
Query: 102 SDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDV 151
H++ L++SG+V+S+G D G LG S + + V V
Sbjct: 68 G-MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQV 116
Score = 100 bits (252), Expect = 3e-24
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 26 VNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHS--------- 76
+ S VP +V +V G + +L +G + + G G G+LG+
Sbjct: 151 MKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210
Query: 77 --DDLHTPSII-----SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHG 129
+ L P + + CG+ + ++ G V+ +G ++ +LG
Sbjct: 211 GLERLLVPKCVMLKSRGSRGHVRFQDAF--CGAY-FTFAISHEGHVYGFGLSNYHQLGTP 267
Query: 130 NSDRQRRPRQIEALQGQ 146
++ P+ + + +
Sbjct: 268 GTESCFIPQNLTSFKNS 284
Score = 77.4 bits (191), Expect = 4e-16
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 30 PVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS--A 87
+P+ + V CG + + + +G V + G G+ +LG G +D +P +
Sbjct: 328 SIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 387
Query: 88 LLGFIIIKVATSCGSDGHSLGLAESGEV 115
L +++ V+ G H++ L + E
Sbjct: 388 LENRVVLSVS--SGGQ-HTVLLVKDKEQ 412
Score = 56.9 bits (138), Expect = 3e-09
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 86 SALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQR-RPRQIEALQ 144
S I H E G V + G GD G+LG G + +R +P + +
Sbjct: 3 SPPADAIPKSKK--VK-VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE 59
Query: 145 G 145
Sbjct: 60 D 60
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 111 bits (278), Expect = 1e-27
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 10/134 (7%)
Query: 25 GVNCSPVPSKVDSFTGAQ--QVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTP 82
+ P KV +F+ Q+ G++ L G V + G G +LG+ +
Sbjct: 188 KIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLK 247
Query: 83 SIISALLGFI-IIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQR----RP 137
++ G + +A G + H L + ++ SWG FG+ G +P
Sbjct: 248 TLDPRPFGLRHVKYIA--SGEN-HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304
Query: 138 RQIEALQGQHAVDV 151
+++ +
Sbjct: 305 KRLALPDNVVIRSI 318
Score = 104 bits (261), Expect = 3e-25
Identities = 32/140 (22%), Positives = 46/140 (32%), Gaps = 17/140 (12%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDL----HTPSI 84
+ Q+ N + L NG V + G G D TP
Sbjct: 138 RESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWK 197
Query: 85 ISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQ 144
+ + I+++A G D H L L E G VF+WG+G +LG +R R
Sbjct: 198 VPTFSKYNIVQLA--PGKD-HILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254
Query: 145 GQHAVDVHYRLHEMDTAVAC 164
G V +A
Sbjct: 255 GLRHV----------KYIAS 264
Score = 101 bits (253), Expect = 3e-24
Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 13/167 (7%)
Query: 32 PSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQG---HSDDLHTPSIISAL 88
+ ++ + G GS LG G + ++ P + L
Sbjct: 3 HHHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFL 62
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
++ + G H+L L E V+SWG D G LG S+ + + + ++A
Sbjct: 63 PRDEAKIISFAVGG-MHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDD 121
Query: 149 VDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPH 195
D E A+I L + QL +
Sbjct: 122 EDGDLNELESTP---------AKIPRESFPPLAEGHKVVQLAATDNM 159
Score = 98.3 bits (245), Expect = 4e-23
Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 36/156 (23%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA- 87
P G T L +V S G G LG+ S+ + A
Sbjct: 57 RLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDAD 116
Query: 88 ----------------------------LLGFIIIKVATSCGSDGHSLGLAESGEVFSWG 119
G ++++A D S L +GEV++WG
Sbjct: 117 DSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLA--AT-DNMSCALFSNGEVYAWG 173
Query: 120 DGDFGKLGHGNSD----RQRRPRQIEALQGQHAVDV 151
+ G Q+ P ++ + V +
Sbjct: 174 TFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQL 209
Score = 97.5 bits (243), Expect = 8e-23
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 30 PVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSD---------- 77
P ++ + + G++ + +L +G + SCG +G +
Sbjct: 302 TKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVH 361
Query: 78 ----DLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGN-SD 132
+ P+ ++ + F + + GS HS+ +A++G +SWG G+ +G G D
Sbjct: 362 GKARAVPLPTKLNNVPKFKSV----AAGSH-HSVAVAQNGIAYSWGFGETYAVGLGPFED 416
Query: 133 RQRRPRQIE--ALQGQHAVDV 151
P +I+ A Q + + V
Sbjct: 417 DTEVPTRIKNTATQDHNIILV 437
Score = 94.8 bits (236), Expect = 7e-22
Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 27 NCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD----LHTP 82
+ + + + G+N F L + ++S G +G+ G + + P
Sbjct: 245 RLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304
Query: 83 SIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQ 139
++ +I +A G HSL L++ G+++S G D ++G + +
Sbjct: 305 KRLALPDNVVIRSIA--AGEH-HSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYK 358
Score = 76.0 bits (187), Expect = 2e-15
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 23 HIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGH-SDDLHT 81
H P+P+K+++ + V G + + + NG S G G +G G DD
Sbjct: 361 HGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEV 420
Query: 82 PSIIS--ALLGFIIIKVATSCGSDGHSL--GLAESGEVFSWGDGDFGKLGHGN 130
P+ I A II V CG S+ G+ S E + L H +
Sbjct: 421 PTRIKNTATQDHNIILVG--CGGQ-FSVSGGVKLSDEDAEKRADEMDDLEHHH 470
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 63.5 bits (155), Expect = 9e-12
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+ VP ++ +G + G L+ G VL G G+L +
Sbjct: 16 ATVP--AEAQSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSG-------- 64
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLG 127
+ +A G+ HSL L + GEV +WG + G+
Sbjct: 65 ----VDAIA--AGNY-HSLAL-KDGEVIAWGGNEDGQTT 95
Score = 56.9 bits (138), Expect = 1e-09
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 19/101 (18%)
Query: 31 VPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLG 90
+P+ S G + G + L+ +G V++ G G+ + A
Sbjct: 57 MPAATQS--GVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT------------VPAEAR 101
Query: 91 FIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS 131
+ +A G+ S L + G+V +WGD G+
Sbjct: 102 SGVDAIA--AGAW-ASYAL-KDGKVIAWGDDSDGQTTVPAE 138
Score = 56.5 bits (137), Expect = 2e-09
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 32 PSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGF 91
++ +G V G + L+ +G V++ G+ Y + AL G
Sbjct: 173 TVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVP----------TEALSGV 221
Query: 92 IIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGN 130
I + G +SL L ++G+V +WG +
Sbjct: 222 SAI----ASGEW-YSLAL-KNGKVIAWGSSRTAPSSVQS 254
Score = 53.5 bits (129), Expect = 2e-08
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISAL 88
+ VP++ S G + G ++ L+ +G V++ G+ S G+ S ++AL
Sbjct: 94 TTVPAEARS--GVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE----AQSGVTAL 146
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLG 127
G ++ ++G V +WGD FG+
Sbjct: 147 ----------DGGV--YTALAVKNGGVIAWGDNYFGQTT 173
Score = 45.8 bits (109), Expect = 8e-06
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 58 GSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFS 117
SV++ G + G+ + A + G H L L + G+V
Sbjct: 2 TSVVAWGGNNDW--GEATVPAEAQSGV-----------DAIAGG-YFHGLAL-KGGKVLG 46
Query: 118 WGDGDFGKLGHGNSD 132
WG G+L +
Sbjct: 47 WGANLNGQLTMPAAT 61
Score = 26.9 bits (60), Expect = 9.2
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 112 SGEVFSWGDGDFGKLGHGNSDRQRRPRQIEA 142
+ V +WG + ++ Q I
Sbjct: 1 ATSVVAWGGNNDWGEATVPAEAQSGVDAIAG 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 8e-06
Identities = 52/298 (17%), Positives = 81/298 (27%), Gaps = 111/298 (37%)
Query: 17 YKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHS 76
Y + F V+ K+ F + TF G L
Sbjct: 1688 YSAMIFETIVDGKLKTEKI--FKEINEHSTS--YTF------------RSEKGLLSA--- 1728
Query: 77 DDLHT----PSIISALLGFIIIKVATSCGSD-------GHSLG----LAESGEVFSWGDG 121
T P++ L+ + S G GHSLG LA +V S
Sbjct: 1729 ----TQFTQPAL--TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES- 1781
Query: 122 DFGKLGHGNSDRQRRPRQIEALQGQHAVD-VHYRLHEMDTAV-----ACIREGMARIIPV 175
V+ V YR M AV GM I P
Sbjct: 1782 --------------------------LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 176 PLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLF 235
+ + + L+ +V + L+ +IV Y N N++ +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLV-EIVNY-----N--------------VENQQYV- 1854
Query: 236 MRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKL 293
+G R L ++ +K+ + ID + L S E + L
Sbjct: 1855 ---AAGDLR---ALDTVTNVLNFIKLQK-ID----------IIELQKSLSLEEVEGHL 1895
Score = 42.3 bits (99), Expect = 2e-04
Identities = 50/285 (17%), Positives = 73/285 (25%), Gaps = 118/285 (41%)
Query: 20 ISFHIGVNC-------SPVPSKV-DSFTGAQQV------VCGQNCTFVLQ---------- 55
+ F IGV C S PS + DS + V + V
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 56 ---------VNGS---VLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSD 103
VNG+ V+S G L+ + L K G D
Sbjct: 362 AGKQVEISLVNGAKNLVVS-----------GPPQSLY--GLNLTLR-----KAKAPSGLD 403
Query: 104 GHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPR-QIEALQGQHAVDVHYRLHE--MDT 160
+S FS +R+ + L V + H +
Sbjct: 404 -------QSRIPFS----------------ERKLKFSNRFL----PVASPF--HSHLLVP 434
Query: 161 AVACIREGMARI----------IPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDL 210
A I + + + IPV S L L IS ++ I+R
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSDLRVL---SGSISERIVDCIIRLP-- 487
Query: 211 DENHILVRWMWEVLDSFSHNERVLFMRF----VSGRSRLPANLAD 251
V+W +H + F SG L D
Sbjct: 488 ------VKWETTTQFKATH-----ILDFGPGGASGLGVLTHRNKD 521
Score = 37.0 bits (85), Expect = 0.008
Identities = 55/351 (15%), Positives = 97/351 (27%), Gaps = 153/351 (43%)
Query: 29 SPVPSKVDS--FTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD-------L 79
P K +S F + G + +G GQG++DD L
Sbjct: 135 RPFDKKSNSALFRAVGE---GNAQLVAI-------------FG--GQGNTDDYFEELRDL 176
Query: 80 HT--PSIISALLGFI------IIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNS 131
+ ++ L+ F +I+ + GL + W +
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDA-EKVFTQGL----NILEWLE----------- 220
Query: 132 DRQRRPRQ------------IEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLS 179
+ P + I +Q HY V G P L S
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQL-----AHY-------VVTAKLLGFT---PGELRS 265
Query: 180 LM--TSSHLEQLV-------------------------------CGE--PHISL--SLLK 202
+ + H + LV C E P+ SL S+L+
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 203 QIVRY-----------RDLDENHILVRWMWEVLDSFSHNERV---LF---MRFV-SGRSR 244
+ +L + + ++ + ++V L V SG
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG--- 381
Query: 245 LPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRY 295
P +L L+ + K +D Q R+P +S + KL++
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLD----------QSRIP-FSER-----KLKF 416
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 8e-06
Identities = 29/213 (13%), Positives = 64/213 (30%), Gaps = 61/213 (28%)
Query: 152 HYRLHEMDTAVACIREGMARIIPV----------------PLLSLMTSSHLEQLVCGEPH 195
H+ H MD + I+ V S+++ ++ ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-MSKD 59
Query: 196 ISLSLL----------KQIVRY---RDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGR 242
L +++V+ L N+ +++ + + ++ ++ R
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 243 SRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNY--------SSKEVMA-EKL 293
RL + +Q F V R + + +LR S K +A +
Sbjct: 117 DRLYND----NQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 294 R------------YAIN--NCKSIDMDNYMLAR 312
+ +N NC S + ML +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Score = 46.0 bits (108), Expect = 1e-05
Identities = 40/285 (14%), Positives = 84/285 (29%), Gaps = 95/285 (33%)
Query: 48 QNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSL 107
+ L+ +VL G G+ + + C S + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK---------------TWV-------ALDVCLS--YKV 176
Query: 108 GLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIRE 167
++F W L + NS +E LQ + Y++ T+ + +
Sbjct: 177 QCKMDFKIF-WL-----NLKNCNSPETV----LEMLQ-----KLLYQIDPNWTSRS---D 218
Query: 168 GMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSF 227
+ I + + S+ + L +L+ +P+ + LL L V + ++F
Sbjct: 219 HSSNI-KLRIHSI--QAELRRLLKSKPYEN-CLL-------VLLN----V-QNAKAWNAF 262
Query: 228 SHNERVLF-------MRFVSGRSRLPANLADLSQRF----------QVMKVDRCIDGLPT 270
+ + ++L F+S + +L S + + LP
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLP- 319
Query: 271 AQTCF---------------FQLRLPNYSSKEVMAEKLRYAINNC 300
+ N+ K V +KL I +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESS 362
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 28.2 bits (63), Expect = 3.8
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 208 RDLDENH--ILVRWMWEVLDSFSHNERVLFM------RFVSGRS 243
R++ + +L WM EV + E V + R++S
Sbjct: 64 REIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP 107
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 28.0 bits (62), Expect = 5.1
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 233 VLFMRFVSGRSRLPAN---LADLSQRFQVMKVDRCIDGLPTAQTCFFQ--LRLPNYSSKE 287
+ GR LP+ AD + + + T Q + Q + + +Y S +
Sbjct: 330 WYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGDYIQNLIDMTDYPSFD 389
Query: 288 V-MAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY 324
+ K + K ++ + R++ + S T
Sbjct: 390 IPATNKTFLEWKHHKKENIMTF---RDHSYRSLMTGTM 424
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 28.0 bits (63), Expect = 5.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 24 IGVNCSPVPSKVDSFTGAQQVVCG 47
+ PS V+ F GA V G
Sbjct: 82 FKIESHNHPSAVEPFQGAATGVGG 105
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 27.2 bits (61), Expect = 5.8
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 181 MTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVS 240
++ + +L + I +L Q+ R +R +V + F+
Sbjct: 95 ISYAKFRELSQQDSEILYTLGSQMAD-R--------LRKT---------TRKVGDLAFLD 136
Query: 241 GRSRLPANLADLSQRFQVMKVDRCID 266
R+ L DL Q+ M +
Sbjct: 137 VTGRVARTLLDLCQQPDAMTHPDGMQ 162
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 27.4 bits (61), Expect = 6.5
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 208 RDLDENH--ILVRWMWEVLDSFSHNERVLFM------RFVSGRS 243
+++ + I+ WM EV + E V + RF+S
Sbjct: 50 KEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,956,359
Number of extensions: 298325
Number of successful extensions: 588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 66
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)