RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15273
(324 letters)
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 374
Score = 137 bits (346), Expect = 2e-38
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 147 HAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVR 206
+ + +G ++P+ L LE ++CG + L+ ++
Sbjct: 215 GLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTV 274
Query: 207 YRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN------LADLSQRFQVMK 260
YR N + W W+ + + R+ ++FV+G RLP ++ Q+F + K
Sbjct: 275 YRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEK 334
Query: 261 VDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNC 300
V LP + TCF +L LP Y S E + EKL +AI
Sbjct: 335 VG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 132 bits (333), Expect = 1e-36
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 151 VHYRLHE-MDTAVACIREGMARIIP-VPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR 208
Y L++ ++ R G + PL L +E L+CG ++ L++ Y
Sbjct: 199 SDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYD 258
Query: 209 D-LDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDG 267
+ +L+R WE++ SF+ ++ LF++F +G R P + + K +
Sbjct: 259 GGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLG-KLKMIIAKNGPDTER 317
Query: 268 LPTAQTCFFQLRLPNYSSKEVMAEKLRYAINN 299
LPT+ TCF L LP YSSKE + E+L AI
Sbjct: 318 LPTSHTCFNVLLLPEYSSKEKLKERLLKAITY 349
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 69.8 bits (169), Expect = 5e-14
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 41 AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGH-SDDLHTPSIISALLGFIIIKVATS 99
GQ+ T + G S G YGRLG G +++ P++IS L + +
Sbjct: 276 WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV----A 331
Query: 100 CGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQI--EALQGQHAVDV 151
CG+ + + G VF+WG G +LG G + P ++ + L+ + + V
Sbjct: 332 CGAS-VGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSV 384
Score = 67.9 bits (164), Expect = 2e-13
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 51 TFVLQVNGSVLSCGEGSYGRLGQGHS-DDLHTPSIISALLGFIIIKVATSCGSDGHSLGL 109
G VL+ G+G G+LG G + + P+++S + G H++ L
Sbjct: 8 RSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQA----EAGGM-HTVCL 62
Query: 110 AESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEM 158
++SG+V+S+G D G LG S + + V V
Sbjct: 63 SKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHT 111
Score = 66.7 bits (161), Expect = 5e-13
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 27 NCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
+P+ + V CG + + + +G V + G G+ +LG G +D +P +
Sbjct: 313 EEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 372
Query: 87 ALLGFIIIKVATSCGSDGHSLGLAESGE 114
+ ++ S G H++ L + E
Sbjct: 373 GKQLENRVVLSVSSGGQ-HTVLLVKDKE 399
Score = 47.9 bits (112), Expect = 7e-07
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 105 HSLGLAESGEVFSWGDGDFGKLGHGNSDRQR-RPRQIEALQG 145
H E G V + G GD G+LG G + +R +P + +
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED 48
Score = 45.6 bits (106), Expect = 4e-06
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDD 78
P+ V Q G T L +G V S G G LG+ S +
Sbjct: 37 RKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE 86
Score = 41.3 bits (95), Expect = 9e-05
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 2/123 (1%)
Query: 28 CSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISA 87
Q CG TF + G V G +Y +LG +
Sbjct: 209 VMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGT-PGTESCFIPQNLT 267
Query: 88 LLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQR-RPRQIEALQGQ 146
G H++ + G+ +S G ++G+LG G ++ P I L
Sbjct: 268 SFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAV 327
Query: 147 HAV 149
+V
Sbjct: 328 SSV 330
Score = 29.0 bits (63), Expect = 0.75
Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 13/132 (9%)
Query: 42 QQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPS-------------IISAL 88
+V G + +L +G + + G G G+LG+ + ++ +
Sbjct: 155 VKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSR 214
Query: 89 LGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHA 148
++ + + ++ G V+ +G ++ +LG ++ P+ + + +
Sbjct: 215 GSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 274
Query: 149 VDVHYRLHEMDT 160
V + + T
Sbjct: 275 SWVGFSGGQHHT 286
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 42.4 bits (98), Expect = 4e-05
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 46 CGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGH 105
G + +G V++ G+ Y + +I + G +
Sbjct: 188 AGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSAI--------------ASGEW-Y 232
Query: 106 SLGLAESGEVFSWGDGDFGKLG--HGNSDRQRRPRQIEALQG 145
SL L ++G+V +WG G S + P AL+G
Sbjct: 233 SLAL-KNGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG 273
Score = 34.4 bits (77), Expect = 0.012
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 29 SPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
+ VP++ S G + G L+ G VL G G+L + +I +
Sbjct: 18 ATVPAEAQS--GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA 72
Score = 34.0 bits (76), Expect = 0.017
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 58 GSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFS 117
SV++ G + + + A + +A G H L L + G+V
Sbjct: 4 TSVVAWGGNNDW-----------GEATVPAEAQSGVDAIA--GG-YFHGLAL-KGGKVLG 48
Query: 118 WGDGDFGKLGH 128
WG G+L
Sbjct: 49 WGANLNGQLTM 59
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 26.0 bits (57), Expect = 3.2
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 215 ILVRWMWEVLDSFSHNERVLFM------RFVSGRSRLPANL 249
IL+ WM + +SF ++ V + R++ + L
Sbjct: 33 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTL 73
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68
[TaxId: 33708]}
Length = 141
Score = 25.7 bits (56), Expect = 5.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 215 ILVRWMWEVLDSFSHNERVLFM 236
+L WM+ V + V +
Sbjct: 46 VLTTWMFCVCKDLRQDNNVFPL 67
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 132
Score = 25.3 bits (55), Expect = 6.2
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 208 RDLDENH--ILVRWMWEVLDSFSHNERVLFM------RFVSGRS 243
+ L + +L WM+ V ++ V+ + R + +
Sbjct: 29 QSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.414
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,208,096
Number of extensions: 55796
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 17
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)