BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15275
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila melanogaster
GN=Prosbeta3 PE=2 SV=1
Length = 205
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 131/205 (63%), Positives = 164/205 (80%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSI+ YNGG +VAM GK+CVAIA D RFGIQ ++ +F+K+F +G M++GL GL TD
Sbjct: 1 MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDI 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
TV ++ FR+NLYE +ENR+M PK AM+S+ LYE RFGPYF+EP+V GLDP+T EP
Sbjct: 61 LTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I NMDLIGC N P DFVV G C++QLYGMCETLW+P+LEPD LFE IAQ++VNA +R+A+
Sbjct: 121 ICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAM 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWGA VYIIE+DK+T R +KTRMD
Sbjct: 181 SGWGATVYIIEKDKITERTLKTRMD 205
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2
SV=1
Length = 205
Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 126/205 (61%), Positives = 168/205 (81%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM+YNGG+++AM GK CVAIA D+RFG+Q + +FQKIF +G +Y+GL GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QTV Q+++FR NLYELKE R++ PK ++M+SN+LYERRFGPY++EP++ GLDP+T EP
Sbjct: 61 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I ++DLIGC DFVV G CS+Q+YGMCE+LWEP++EP+DLFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG G VV +IE+DK+T R +K RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2
Length = 205
Score = 287 bits (735), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 124/205 (60%), Positives = 168/205 (81%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM+YNGG+++AM GKNCVAIA D+RFGIQ + +FQKIF +G +Y+GL GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QTV Q+++FR NLYELKE R++ P L++M++N+LYE+RFGPY+ EP++ GLDP+T +P
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I ++DLIGC DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1
SV=1
Length = 205
Score = 286 bits (732), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 123/205 (60%), Positives = 168/205 (81%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MS+M+YNGG+++AM GKNCVAIA D+RFGIQ + +FQKIF +G +Y+GL GLATD
Sbjct: 1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QTV Q+++FR NLYELKE R++ P L++M++N+LYE+RFGPY+ EP++ GLDP+T +P
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I ++DLIGC DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
Length = 205
Score = 286 bits (732), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 123/205 (60%), Positives = 168/205 (81%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM+YNGG+++AM GKNCVAIA D+RFGIQ + +FQKIF +G +Y+GL GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QTV Q+++FR NLYELKE R++ P L++M++N+LYE+RFGPY+ EP++ GLDP+T +P
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I ++DLIGC DFVV G CS+Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG G +V++IE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
Length = 205
Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 123/205 (60%), Positives = 168/205 (81%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM+YNGG+++AM GKNCVAIA D+RFGIQ + +FQKIF +G +Y+GL GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QTV Q+++FR NLYELKE R++ P L++M++N+LYE+RFGPY+ EP++ GLDP+T +P
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I ++DLIGC DFVV G C++Q+YGMCE+LWEPN++P+ LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|P25451|PSB3_YEAST Proteasome subunit beta type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP3 PE=1 SV=1
Length = 205
Score = 255 bits (652), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 111/199 (55%), Positives = 155/199 (77%), Gaps = 1/199 (0%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
NGG +VAMTGK+CVAIACD R G Q +++ F+KIF G H+++G+ GLATD T+ +
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
R++ NLY+LKE R + P+ ++S+ LYERRFGPYFV P+V G++ ++ +P I DL
Sbjct: 67 FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDL 126
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
IGC+++ DF+V G SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SGWGAV
Sbjct: 127 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 186
Query: 187 VYIIEQDKVTVRHVKTRMD 205
VYII++D+V R++K R D
Sbjct: 187 VYIIKKDEVVKRYLKMRQD 205
>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup3 PE=3 SV=1
Length = 204
Score = 247 bits (630), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 113/205 (55%), Positives = 148/205 (72%), Gaps = 1/205 (0%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM YNGGS VAM GKNCVAIA D R G+Q +L +NF K+F +G Y+GL GLATD
Sbjct: 1 MSIMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT+Y+ R++ NLY+ +E R++ PK ++S+ LYE+RFGPYF P+V G+ + P
Sbjct: 61 QTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNT-PF 119
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I D IGC++ DF+V G ++QLYGMCE+++EPNLEPDDLFETI+QAL+NA +R+ +
Sbjct: 120 ICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCI 179
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWG VVY+I DK R VK R D
Sbjct: 180 SGWGCVVYVITADKCIKRLVKGRQD 204
>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3
PE=1 SV=1
Length = 204
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/205 (53%), Positives = 143/205 (69%), Gaps = 1/205 (0%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM+Y GG++VAM G CV IA D R G Q T +A + +K+ +V +YVGL G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
+TV +KI FR+NLYEL+ENR + P+VL MISN+ Y+ RFG YF EP+V GLD +T +P
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLD-DTNKPY 119
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I MD IGCV+ P DFV G + L G+CE W N++PD+LFE AQ++++ ER+A
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAA 179
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWGAVVY I +DKV V +K RMD
Sbjct: 180 SGWGAVVYTITKDKVNVSTIKARMD 204
>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1
Length = 204
Score = 231 bits (589), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 147/205 (71%), Gaps = 1/205 (0%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSI YNG ++VAM GKNC AIA D+R G+Q +A +FQ+IF++ +YVGL GLATD
Sbjct: 1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT+YQ+ FR LY+L+E R M P+ +++S +LYE+RFGPYF +P++ GL E +P
Sbjct: 61 QTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLG-EDDKPF 119
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I MD IG DFVV G ++ LYG CE++++P++EP++LFETI+QAL+++ +R+ +
Sbjct: 120 ICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCL 179
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWG VY++ ++V R +K RMD
Sbjct: 180 SGWGGHVYVVSPNQVIERTLKGRMD 204
>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica
GN=PBC1 PE=2 SV=1
Length = 204
Score = 226 bits (577), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 144/205 (70%), Gaps = 1/205 (0%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSI YNG ++VAM GKNC AIA D+R G+Q +A +FQ++F++ +Y+GL GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT+YQ++ FR LY+L+E R M P+ +++S +LYE+RFGPYF +P++ GL E EP
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLG-EDNEPF 119
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I MD IG DFVV G S+ LYG CE++++PN+EP++LFETI+QAL ++ +R+ +
Sbjct: 120 ICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCL 179
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWG V ++ +V +K RMD
Sbjct: 180 SGWGGFVLLVTPTEVKECVIKGRMD 204
>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3
PE=3 SV=1
Length = 205
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 146/205 (71%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM YNGG+ + M GKNCVAIA D RFGIQ ++++F K++++ +VG+ GL TD
Sbjct: 1 MSIMAYNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDA 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT+YQK+ FR NLY+L+E R MSP+V+ +++NMLYE+RFGPYF EP++ GL+ P
Sbjct: 61 QTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I MDLIG DF+V G + +YG+CETL++ ++ DDLFETI+Q ++ + +R+A+
Sbjct: 121 ISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDAL 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWGA+V++I +V + + R D
Sbjct: 181 SGWGAIVHVITPTQVITKKLLGRQD 205
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2
PE=1 SV=1
Length = 204
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 144/205 (70%), Gaps = 1/205 (0%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSI YNG ++VAM GKNC AIA D+R G+Q +A +FQ+I ++ H+++GL GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT+YQ++ FR LY+L+E R M P+ +++S +LYE+RFGP+ +P++ GL + +P
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDN-KPF 119
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I MD IG DFVV G S+ LYG CE +++P++E ++LFETI+QAL+++ +R+ +
Sbjct: 120 ICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCL 179
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWG VY++ +V R +K RMD
Sbjct: 180 SGWGGHVYVVTPKEVKERILKGRMD 204
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1
PE=1 SV=2
Length = 204
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 143/205 (69%), Gaps = 1/205 (0%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSI YNG ++VAM GKNC AIA D+R G+Q +A +FQ+I ++ +++GL GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT+YQ++ FR LY+L+E R M P+ +++S +LYE+RFGPY +P++ GL + +P
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDD-KPF 119
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I MD IG DFVV G S+ LYG CE +++P++E ++LFETI+QAL+++ +R+ +
Sbjct: 120 ICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCL 179
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SGWG VYI+ ++ R +K RMD
Sbjct: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
>sp|Q9NDA1|PSB3_TRYBB Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3
PE=2 SV=1
Length = 205
Score = 206 bits (524), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 137/205 (66%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSI+TY+GGS +AM GK C + D R G Q ++ K+ + + +GL GL TD
Sbjct: 1 MSILTYSGGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQ 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QT QK+ FR +Y+L+E R ++ K A++S+MLYE RFGP+FVEP++ +D +T E
Sbjct: 61 QTFAQKVNFRTEMYKLREERDINGKAFAALVSSMLYEARFGPWFVEPVIGTIDRKTGEVY 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
+ DLIG +P D+V G C++ L+GMCE LW P LEP++LFE AQA+++AC+R+++
Sbjct: 121 LCATDLIGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSL 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG+GAV I+ +DK+ R +K R D
Sbjct: 181 SGYGAVAAIVTKDKLVTRLIKGRKD 205
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 172 bits (436), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 129/206 (62%), Gaps = 3/206 (1%)
Query: 2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALA-DNFQKIFQVGSHMYVGLPGLATDT 60
+I YNG +++ + G +CVA+A DKR G L N ++IF++ +GL GL TD
Sbjct: 3 NIWEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDV 62
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
T Y++IR + NLY L+E+R++ P+ MIS+ LY+ RFGPYF+ P++ G + + +P
Sbjct: 63 LTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEAD-GKPY 121
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
+G MD IGC++ ++F + G SD L G+CET +P++ D++ + Q + +A R+A
Sbjct: 122 LGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAY 181
Query: 181 SGWGAVVYIIEQDKVTVR-HVKTRMD 205
SGWGA V ++ +D T + TRMD
Sbjct: 182 SGWGAHVVVLRRDGTTSDIPISTRMD 207
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 4/195 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + + V +A DKR + +KI ++ +M + GL D Q +
Sbjct: 12 KGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADV 71
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
+R YEL ++MS K +SN+L+ RF PY V+ +V G D P + ++D
Sbjct: 72 LRMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGFDT---APRLYSLDW 128
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
G V + +F+V G S G+ E + PN++ ++L +A+ A R+ SG G
Sbjct: 129 FGTVAE-EEFLVTGSGSPMAVGVIEAEYNPNMDLEELVNLAVRAVFAATRRDTASGEGID 187
Query: 187 VYIIEQDKVTVRHVK 201
V +I+++ +T+RH +
Sbjct: 188 VAVIDRNGITMRHYR 202
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 93.2 bits (230), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Query: 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
Y G + V + K+ V +A +KR + + +KI+Q+ M + G D Q + +
Sbjct: 9 YKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLAR 68
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
I+ NLYE++ RK + + + + SN+L R+ PY V+ ++ G+D E I ++D
Sbjct: 69 IIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS--IYSID 126
Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
IG + D V G S YG+ E + P + D+ E +A+ +A +R++ SG G
Sbjct: 127 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 186
Query: 186 VVYIIEQDK 194
V I +D+
Sbjct: 187 DVVKITEDE 195
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 2/188 (1%)
Query: 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
Y G + V + K+ V +A +KR + + +KI+++ + + G D Q + +
Sbjct: 10 YKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFLAR 69
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
I LYE+++ K + K + ++SN+L R+ PYFV+ +V G+D P I ++D
Sbjct: 70 LISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGVDKRG--PSIYSID 127
Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
L+G + D V G S YG+ E + P + DD E +A+ +A R++ SG G
Sbjct: 128 LLGGAIEEIDIVATGSGSPTAYGVLEDRYTPEITVDDGVELAVRAIYSAMRRDSASGDGI 187
Query: 186 VVYIIEQD 193
V I +D
Sbjct: 188 DVVKITKD 195
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 5/190 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + V +A D+R + +KIF++ ++ V G D Q +
Sbjct: 9 KGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDL 68
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGNM 124
+R LYEL+ NR +S + L MIS++L+ + F PY V+ +V G + + +P + N+
Sbjct: 69 MRAEARLYELRHNRMISARALANMISHVLHSSLKAFRPYLVQLIVGGFNDD--DPALYNL 126
Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
D G + + D+ G S YG+ E +E + DD E +A+ +A ER+ +G G
Sbjct: 127 DPSGSIIE-EDYTATGSGSPTAYGVLEAEYEEGMSLDDAIEVAVRAVKSALERDTGTGEG 185
Query: 185 AVVYIIEQDK 194
V I +++
Sbjct: 186 VTVVTITREE 195
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 96/188 (51%), Gaps = 2/188 (1%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + V +A +KR + + +K++Q+ + + + G D Q + +
Sbjct: 10 TGTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARI 69
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
I NLY+++ +R+++ ++SN L + R+ PY+V+ +V G+D P + ++D
Sbjct: 70 ITVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGIDDHG--PSVYSVDA 127
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
+G + D V G S YG+ E + P + D+ E +AL +A +R+A SG G
Sbjct: 128 MGGATKEEDIVSTGSGSPMAYGVLEDRYRPGMNEDEAVELAVRALRSAMKRDAGSGEGIH 187
Query: 187 VYIIEQDK 194
V +I +D+
Sbjct: 188 VVVITKDR 195
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 87.4 bits (215), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 2/192 (1%)
Query: 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
Y G + + + V +A ++R + + + QKI+++ + + + G D Q + +
Sbjct: 7 YKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGDGQRLAR 66
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
++ L+EL+ + MS L ++SN+L E R+ PY+V+ ++ GLD A P I ++D
Sbjct: 67 ILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGLDK--AGPKIYSLD 124
Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
+G + FV G S YG+ E ++P + ++ E A+AL +A +R++ SG G
Sbjct: 125 PLGGRIEEEKFVSTGSGSPIAYGVLEDRYKPGMSVEEGVELAARALESAMKRDSASGNGM 184
Query: 186 VVYIIEQDKVTV 197
+I +K +
Sbjct: 185 QFCVITAEKFEI 196
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 2/189 (1%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
T G + + + K+ + +A +KR + + +K++QV + + G D Q +
Sbjct: 6 TLKGTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLA 65
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
+ + NLY+++ R +S ++SN L + R PY+V+ +V G+D P + ++
Sbjct: 66 RIMSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQLLVGGVDA--TGPSVYSV 123
Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
D +G + SD V G S YG+ E ++ +L D+ E +AL A R++ SG G
Sbjct: 124 DAMGGATRESDIVATGSGSPMAYGVLEDRYKKDLTEDEAIELAIRALRAAMRRDSASGEG 183
Query: 185 AVVYIIEQD 193
V II +D
Sbjct: 184 IHVVIITKD 192
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 2/187 (1%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKI 67
G + V + V +A ++R + + +K+ + + + + G D Q + + I
Sbjct: 11 GTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVRII 70
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
NLYE++ +K+S ++SN L + RF PY+V+ +V G+D T+ P + ++D
Sbjct: 71 NVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQLLVGGVD--TSGPSVYSVDAA 128
Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
G +FV G S YG+ E ++PN+ ++ E +AL A R++ SG G V
Sbjct: 129 GGATLEENFVSTGSGSLTAYGVLEDRFKPNMTEEEAIELAVRALRAAMLRDSASGEGYNV 188
Query: 188 YIIEQDK 194
II Q+K
Sbjct: 189 VIITQEK 195
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKI 67
G + V + K+ V +A +KR L+ +K+F + + + G+ D QT+ + +
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKIL 67
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
+ YEL+ RK S + ++S +++ RRF P+F E +V G+D E I+ MD +
Sbjct: 68 KLNAKAYELEMKRKPSTHSMARLLSVIMFSRRFMPFFAEVLVGGIDEEGPHLIV--MDPL 125
Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
G + + ++ G + + +T + P++ ++ + QAL A ER+ VSG G +
Sbjct: 126 GSLIE-DNYAALGTGAKLAVAVLDTGYRPDITVEEAKKLAVQALKAAIERDPVSGGGIDL 184
Query: 188 YIIEQDKVTVRHVKTRM 204
I++++ V+ ++
Sbjct: 185 AIVDKNGAREEEVRVQL 201
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 3/197 (1%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKI 67
G + V + K V +A +KR L+ +K+F V + + G+ D QT+ + +
Sbjct: 8 GATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKIL 67
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
+ YEL+ RK S + ++S +++ RRF P+F E +V G+D E I+ MD +
Sbjct: 68 KLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAEVLVGGIDDEGPHLIV--MDPL 125
Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
G + + ++ G + + + ++P++ D + QAL A ER+ VSG G +
Sbjct: 126 GSLIE-DNYAALGTGAKLAIAIIDASYKPDMSLQDAKKLAVQALKAALERDPVSGGGIDL 184
Query: 188 YIIEQDKVTVRHVKTRM 204
+I+++ VK ++
Sbjct: 185 VVIDKNGAREEEVKLQV 201
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 7/199 (3%)
Query: 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
G+++ + N V IA +KR G L+ N +K+ + H+ +G GL D Q + + +R
Sbjct: 18 GTVLGIKAVNGVVIAGEKRLTYDGYVLSKNTRKVHPITKHVGIGFAGLVGDAQFIIRALR 77
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
YEL+ R++ + L ++S +LY + P E +V G D + P I +D +G
Sbjct: 78 MEAENYELQLGREIRVRGLAKILSLILYSYKLAPLMTEVVVGGFDEKG--PQIYVLDPVG 135
Query: 129 CVNQPSDFVV--GGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
+ + + GGP + G+ E + +++ D+ + A+ A ER+AVSG G
Sbjct: 136 SLIEDKYVALGSGGPIA---LGIIEKEYREDIDVDEAEKLAVSAIREAIERDAVSGDGVD 192
Query: 187 VYIIEQDKVTVRHVKTRMD 205
V I ++ ++R R +
Sbjct: 193 VLRITEEGYSLREYMFRRE 211
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 101/194 (52%), Gaps = 3/194 (1%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTV 63
T G + V + + V +A DKR + G +AD +K++++ ++ + + G D Q +
Sbjct: 3 TMKGTTTVGLICDDAVILATDKRASM-GNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAI 61
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
+ + LY+++ + +SP+ ++SN+L+ R P+ + ++ G D T P + +
Sbjct: 62 VRALIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDL-TDGPKLFS 120
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
+D +G +N+ F G S YG+ E ++ ++ ++ + +AL +A ER+ SG
Sbjct: 121 LDPLGGMNEEKTFTSTGSGSPIAYGVLEAEYDRDMSIEEGLKLALKALKSAMERDTYSGN 180
Query: 184 GAVVYIIEQDKVTV 197
G V +I ++ V +
Sbjct: 181 GVSVAVITKEGVKL 194
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 2/190 (1%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
T G + V + + V +A +KR + +KI+Q+ + + G D Q +
Sbjct: 7 TMKGTTTVGIVFETGVVLASEKRATMGYLISNKTAKKIYQIAPRIGLTTAGGVGDAQQLA 66
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
+ + NLYE++ +++S + ++SN+L+ R P++V+ ++ G+D ET P++ ++
Sbjct: 67 RLMTVEANLYEIRRGKRISVQAASTLLSNILHGNRMFPFYVQLLIGGVD-ETG-PVLFSV 124
Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
D +G + V G S YG+ E + ++ E +AL +A +R+A SG G
Sbjct: 125 DAVGGTGKEDGIVATGSGSPMAYGVLEDRYTLGMDERSAIELAIRALRSAIKRDAGSGEG 184
Query: 185 AVVYIIEQDK 194
V +I +D
Sbjct: 185 VAVVVITEDS 194
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 13/210 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
NGGSIVA+ G + IA D R + K+F++ +G G DT ++
Sbjct: 28 NGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGS 87
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
I+ R YE R M+ + + M+S +Y RRF PY+V ++ G+D E + ++ + D
Sbjct: 88 IKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNE-GKGVVYSYDP 146
Query: 127 IGCVNQPSDFVVGG-------PCSDQLYGM----CETLWEPNLEPDDLFETIAQALVNAC 175
IG + + + GG P D G E + L + + ++A
Sbjct: 147 IGHCEKAT-YRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDTFISAA 205
Query: 176 ERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
ER+ +G ++ II +D + VR + R D
Sbjct: 206 ERDIYTGDSVLINIITKDGIEVRTLTLRQD 235
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 3/191 (1%)
Query: 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
+ G + V + K+ V +A +KR + + +KI+++ + + G D Q + +
Sbjct: 7 FKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGDAQFLAR 66
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
I+ NLY +++ + + K + ++SN+L R+ PY V+ ++ G+D A+ I ++D
Sbjct: 67 LIKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDKTGAK--IYSID 124
Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
IG + D V G S YG+ E + ++ D+ E +A+ +A +R++ SG G
Sbjct: 125 PIGGAIEEIDIVATGSGSPMAYGVLEDNYRKDINVDEAVELAIRAIYSAMKRDSASGDGI 184
Query: 186 -VVYIIEQDKV 195
VV I E++ V
Sbjct: 185 DVVKITEKEYV 195
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
M++ G + + + ++ V +A DKR G L+ NF+KIF + + + GL D +
Sbjct: 1 MSFAGATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIFVINDRIGIAFAGLYGDMGGL 60
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
+ + + L L+ + + + + +S++LY +F P+ VE +V G+DP EP +
Sbjct: 61 VRIVEGQMRLASLETGKPATVRNVAKFLSSLLYSYKFFPFNVEAIVGGIDP-GGEPKLYV 119
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
+D +G + + D+V G + +G+ E +++ + ++ + +AL + R+A +G
Sbjct: 120 LDPLGSIIE-EDYVAAGTGATTAFGLLEHVYKRGMSLEEAKKAAVEALRASMARDAGTGD 178
Query: 184 GAVVYIIE-QDKVTVRHVKTRM 204
G V ++ K ++ +K R+
Sbjct: 179 GIDVLVLPVSGKPSLETIKFRL 200
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Query: 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
G+ V + + V +A +KR ++ + +K++++ M + GL D QT+ + +
Sbjct: 6 GTTVGIRVSDGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVE 65
Query: 69 FRQNLYELKENRKMSPKV--LLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
LYEL N +SPKV + ++S +LYERR PY+ E +V GLD E + + ++D
Sbjct: 66 AEMRLYELDSN--ISPKVWTVAKLLSYILYERRLFPYYAEIVVGGLDEEGSH--LYSLDP 121
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
IG + + D+V G + + E+ ++ ++ D+ +++ A +R+A SG G
Sbjct: 122 IGAIIE-DDYVALGSGTQLAISIVESNYKKDMSLDEALSLALKSVYAAMKRDAASGDGVD 180
Query: 187 VYII 190
V +I
Sbjct: 181 VLVI 184
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + V +A + R + + +KI+Q+ + + G D Q + +
Sbjct: 10 KGTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLVRI 69
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
++ NL+E++ + MS ++SN L + R+ PY+V+ ++ G D E P + ++D
Sbjct: 70 LQVECNLFEMRRGKTMSVGAASTLLSNYLNQNRYYPYYVQLLMGGFDDEG--PSVYSVDA 127
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
+G + D V G S YG+ E + ++ DD + +A+ +A R++ SG +
Sbjct: 128 MGGATKEEDIVATGSGSPFAYGVLEDQYRAGMKEDDAKDLAVRAVRSAMRRDSASGEDIM 187
Query: 187 VYIIEQDK 194
V +I +DK
Sbjct: 188 VVVITKDK 195
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 11/209 (5%)
Query: 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
+NGG+I+A+ G++ +A D R + + K +++ +G G D T+ +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E + + + D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGAVYSFD 153
Query: 126 LIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQALVNACE 176
+G + S F GG S L + + + L D + ++A E
Sbjct: 154 PVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 212
Query: 177 RNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
R+ +G + I+ ++ + V R D
Sbjct: 213 RDVYTGDALRICIVTKEGIREETVSLRKD 241
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKI 67
G + V + K+ V +A +KR L+ +K+F + + + G+ D Q++ + +
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGRKVFVIDDKLAIASAGIIADMQSLARIV 67
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
+ YEL+ +K + + + ++S +++ RR+ P+F E +V G+D E + I+ MD +
Sbjct: 68 KINAKAYELETRKKPTVRSMAKLLSVIMFSRRYMPFFAEVLVGGVDEEGSHLIV--MDPL 125
Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
G + + ++ G + + +T + ++ D + +AL A ER+ VSG G +
Sbjct: 126 GSLIE-DNYAALGTGAKLAISVLDTGYREDITLQDAKKLAVKALKAAIERDPVSGGGIDL 184
Query: 188 YIIEQDKVTVRHVKTRM 204
+I+Q VK ++
Sbjct: 185 VLIDQTGAKEEEVKVQL 201
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 4/184 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
+G + V + + V +A DKR + +KI + +++ + + GL D Q +
Sbjct: 24 SGTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDV 83
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
+R LYE+ K S + + +++SN+L+ +F PY V+ +V G D +P + +DL
Sbjct: 84 LREEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYD---TQPRLYTLDL 140
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
G + + + G S YG+ E + +L ++ + A+ +A R+A SG GA
Sbjct: 141 FGSITE-DKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDAASGDGAD 199
Query: 187 VYII 190
V +I
Sbjct: 200 VVVI 203
>sp|A0B5B1|PSB_METTP Proteasome subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=psmB PE=3 SV=1
Length = 207
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 2/189 (1%)
Query: 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
+ G + V + V +A + R + + +KI+Q+ + + G+ D Q + +
Sbjct: 5 FKGTTTVGIVCDGGVVLASESRATMGSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVR 64
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
I+ LY ++ ++ K + +++SN+L RR+ P+ V+ +V G+D P I ++D
Sbjct: 65 MIQAEARLYRMQRGEPLTIKAITSLLSNILSARRYFPFLVQLVVGGVDK--MGPKIFSLD 122
Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
+G + D V G S YG+ E+L++P L D +A+ A +R++ SG G
Sbjct: 123 ALGGQIEEHDIVSTGSGSPIAYGVLESLYKPGLSIQDGSVLCVRAVHTAMKRDSASGNGI 182
Query: 186 VVYIIEQDK 194
+ I +D+
Sbjct: 183 ALVRITKDR 191
>sp|O27270|PSB_METTH Proteasome subunit beta OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmB PE=3 SV=1
Length = 210
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 3/190 (1%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
T G + V +T K+ V A ++R + KIF++ H+ + G D Q++
Sbjct: 6 TLKGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLM 65
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
+ ++ LY ++ + K+S + A+ +N+L+ RF P+ V+ ++ G+D A+ I ++
Sbjct: 66 KYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAK--IYSL 123
Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
D G + P FV G S YG+ E + L D+ + +A+ +A ER+ SG G
Sbjct: 124 DPSGGM-IPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNG 182
Query: 185 AVVYIIEQDK 194
+V + +++
Sbjct: 183 ILVATVTEEE 192
>sp|A6VK02|PSB_METM7 Proteasome subunit beta OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmB PE=3 SV=1
Length = 219
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + K+ V +A DKR G +AD +K++++ ++ + + G D Q++ +
Sbjct: 14 GTTTVGLLCKDGVVLATDKR-ATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRL 72
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
I +Y+++ M+P +ISN+L+ R P + ++ G D + ++D
Sbjct: 73 ISAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKLF-SLDP 131
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
+G +N+ S F G S YG+ E + ++ D +AL +A +R+A SG G
Sbjct: 132 VGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYSGNGIS 191
Query: 187 VYIIEQDKVTV 197
+ I +D V +
Sbjct: 192 LAHINKDGVNI 202
>sp|A9A788|PSB_METM6 Proteasome subunit beta OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmB PE=3 SV=1
Length = 219
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 94/191 (49%), Gaps = 3/191 (1%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + K+ V +A DKR G +AD +K++++ ++ + + G D Q++ +
Sbjct: 14 GTTTVGLLCKDGVVLATDKR-ATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRL 72
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
I +Y+++ M+P +ISN+L+ R P + ++ G D + ++D
Sbjct: 73 ISAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKLF-SLDP 131
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
+G +N+ S F G S YG+ E + ++ D +AL +A +R+A SG G
Sbjct: 132 VGGINEESSFTATGSGSPTAYGVLEAEYRSDVTIDKGLLVAVKALSSAMQRDAYSGNGIS 191
Query: 187 VYIIEQDKVTV 197
+ I +D V +
Sbjct: 192 LAHINKDGVNI 202
>sp|B8D673|PSB1_DESK1 Proteasome subunit beta 1 OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=psmB1 PE=3 SV=1
Length = 202
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
G+ + + V +A +KR G L+ N +KI + +H+ VG GL D + + +R
Sbjct: 8 GTAIGLKTSEGVVLASEKRLTYDGFVLSRNARKIHMITNHIGVGFAGLMGDVNFLVKVLR 67
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
YEL+ R++ + L ++S +LY + P E +V G D E P + +D +G
Sbjct: 68 LEAKNYELQHGREIKTRSLAKLLSVILYSYKLAPMLTEVVVGGYDEEG--PSLYILDPVG 125
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
V + VG L G E + P L + E A+ ER+ +SG G +
Sbjct: 126 SVIEEKYVAVGSGAQLAL-GYIEPRYNPGLGLKEAEELAVNAVKTVIERDVLSGDGIDLV 184
Query: 189 IIEQDKVTVRHVKTRM 204
+I+++ + + +M
Sbjct: 185 VIDKNGYQSKEIIFKM 200
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
S +NGG+++A+ G++ +A D R + + K +++ +G G D
Sbjct: 30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 89
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E +
Sbjct: 90 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGA 148
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQAL 171
+ + D +G + S F GG S L + + + L D +
Sbjct: 149 VYSFDPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 207
Query: 172 VNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
++A ER+ +G V I+ ++ + V R D
Sbjct: 208 ISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
>sp|A9A4A1|PSB1_NITMS Proteasome subunit beta 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB1 PE=3 SV=1
Length = 198
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 4/190 (2%)
Query: 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
M G + V +T V A +KR ++ +K F + + GL D Q +
Sbjct: 3 MYMPGATAVGITFDGGVVFASEKRIAFGNFLVSKTTKKTFPITPKVGATCAGLVADMQIL 62
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
+I + +++ R + P + M+SNM+YERR+ P + +V G+ +PI+
Sbjct: 63 SLQIAALAKIRKMELKRDVPPNTVAKMMSNMMYERRYFPLLTQVIVGGV---VDKPIMYT 119
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
+D +G V P ++ G ++ G+ + ++PN+ D+ + +A+ A R++ SG
Sbjct: 120 LDPLGSV-LPDEYAAVGTGAEMALGVLDPQFKPNMTKDEAIDLAKRAVRAASLRDSASGD 178
Query: 184 GAVVYIIEQD 193
G V +I +D
Sbjct: 179 GVDVLVITKD 188
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
S +NGG+++A+ G++ +A D R + + K +++ +G G D
Sbjct: 29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E +
Sbjct: 89 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLD-EEGKGA 147
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQAL 171
+ + D +G + S F GG S L + + + L D +
Sbjct: 148 VYSFDPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVF 206
Query: 172 VNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
++A ER+ +G + I+ ++ + V R D
Sbjct: 207 ISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
S +NGG+++A+ G++ +A D R + + K +++ +G G D
Sbjct: 29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 88
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E +
Sbjct: 89 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGA 147
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQAL 171
+ + D +G + S F GG S L + + + L D +
Sbjct: 148 VYSFDPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVF 206
Query: 172 VNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
++A ER+ +G + I+ ++ + V R D
Sbjct: 207 ISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKI 67
G + V +T K+ V A ++R + +KIF++ H+ + G D Q + + I
Sbjct: 8 GTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKINDHIVTTIAGSVGDAQNLMKII 67
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
+LY+++ N K+S K ++ +N+L R GP +V+ ++ G+D + +P + ++D
Sbjct: 68 EAEVSLYQMRNNDKISVKAAASVTANIL---RSGPMYVQTLLGGMDGD--KPSLYSLDPA 122
Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
G + + + ++ G S YG+ E + + D+ E +A+ A ER+ SG G +V
Sbjct: 123 GGMIEDT-YISTGSGSIVAYGVLEDRYHEEITTDEGLEIAVRAIKAASERDTFSGNGYLV 181
Query: 188 YIIEQD 193
+ +D
Sbjct: 182 AKVTKD 187
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 103/199 (51%), Gaps = 7/199 (3%)
Query: 4 MTY---NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
M+Y G + V + G V +A +KR G ++ +K++++ ++ + L GL D
Sbjct: 1 MSYEYGTGATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADL 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPE-TAEP 119
Q + + +R Y + R++S + + +++ +LY ++ P+ E +V GL+ + TA+
Sbjct: 61 QAISKILRAEIEYYNIVTGRRISVRAVARLLATILYSYKYYPFLSETLVGGLEADGTAKL 120
Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNA 179
+ MD +G + + D+ G + G+ E + ++ DD + A+ A ER+A
Sbjct: 121 YV--MDPLGSLIE-DDYAAIGSGAPIAIGILENGYSKDMSVDDAKKLAIAAVRAAIERDA 177
Query: 180 VSGWGAVVYIIEQDKVTVR 198
+SG G + +I +++ +++
Sbjct: 178 MSGDGIDLLVIRREEDSIK 196
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 11/214 (5%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
S +NGG+++A+ G++ +A D R + + + K +++ +G G D
Sbjct: 27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 86
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E
Sbjct: 87 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEE-GRGA 145
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQAL 171
+ + D +G Q + GG S L + E + + L + + +
Sbjct: 146 VYSFDPVGSY-QRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVF 204
Query: 172 VNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
++A ER+ +G + II ++ + V R D
Sbjct: 205 ISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 11/214 (5%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
S +NGG+++A+ G++ +A D R + + + K +++ +G G D
Sbjct: 26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDC 85
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E
Sbjct: 86 LTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEE-GRGA 144
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQL---------YGMCETLWEPNLEPDDLFETIAQAL 171
+ + D +G Q + GG S L + E + + L + + +
Sbjct: 145 VYSFDPVGSY-QRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVF 203
Query: 172 VNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
++A ER+ +G + II ++ + V R D
Sbjct: 204 ISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,503,523
Number of Sequences: 539616
Number of extensions: 3080948
Number of successful extensions: 7101
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 6822
Number of HSP's gapped (non-prelim): 290
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)