Query psy15275
Match_columns 205
No_of_seqs 121 out of 1097
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:56:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 7.9E-54 1.7E-58 341.7 24.2 203 1-205 1-212 (212)
2 cd03759 proteasome_beta_type_3 100.0 1.9E-51 4.1E-56 324.2 24.8 193 6-200 1-194 (195)
3 cd03761 proteasome_beta_type_5 100.0 2.9E-49 6.3E-54 310.0 24.0 186 9-197 1-186 (188)
4 cd03760 proteasome_beta_type_4 100.0 3.6E-49 7.8E-54 311.6 23.4 190 7-198 1-195 (197)
5 cd03758 proteasome_beta_type_2 100.0 5.3E-49 1.1E-53 309.7 23.5 189 9-199 2-192 (193)
6 TIGR03634 arc_protsome_B prote 100.0 1.6E-48 3.5E-53 305.1 23.4 185 8-195 1-185 (185)
7 cd03762 proteasome_beta_type_6 100.0 1E-47 2.2E-52 301.3 24.2 187 9-198 1-187 (188)
8 COG0638 PRE1 20S proteasome, a 100.0 6.1E-48 1.3E-52 311.8 23.5 191 5-198 27-220 (236)
9 cd03764 proteasome_beta_archea 100.0 1.7E-47 3.7E-52 300.0 24.0 186 9-197 1-186 (188)
10 KOG0179|consensus 100.0 8.6E-48 1.9E-52 293.5 20.0 203 1-205 22-235 (235)
11 PTZ00488 Proteasome subunit be 100.0 6.4E-47 1.4E-51 307.4 24.4 191 4-197 35-225 (247)
12 cd01912 proteasome_beta protea 100.0 1.1E-46 2.4E-51 295.5 24.0 188 9-198 1-188 (189)
13 cd03763 proteasome_beta_type_7 100.0 1.1E-46 2.4E-51 295.6 24.0 186 9-198 1-186 (189)
14 TIGR03690 20S_bact_beta protea 100.0 6E-46 1.3E-50 297.6 23.9 191 7-197 1-201 (219)
15 cd03750 proteasome_alpha_type_ 100.0 2.7E-45 5.9E-50 295.4 22.5 187 5-196 24-215 (227)
16 cd03765 proteasome_beta_bacter 100.0 7E-45 1.5E-49 292.7 24.3 185 9-197 1-204 (236)
17 TIGR03633 arc_protsome_A prote 100.0 1.2E-44 2.5E-49 291.2 22.7 193 5-202 26-222 (224)
18 cd03752 proteasome_alpha_type_ 100.0 9.3E-45 2E-49 289.7 21.5 184 5-190 26-213 (213)
19 PTZ00246 proteasome subunit al 100.0 1.4E-44 3.1E-49 295.5 22.5 188 5-194 28-219 (253)
20 PRK03996 proteasome subunit al 100.0 4.3E-44 9.2E-49 290.9 22.0 192 5-201 33-228 (241)
21 cd03755 proteasome_alpha_type_ 100.0 4.1E-44 8.8E-49 284.9 21.3 180 5-190 24-207 (207)
22 PF00227 Proteasome: Proteasom 100.0 5.8E-44 1.3E-48 279.9 21.2 183 6-190 2-190 (190)
23 cd03751 proteasome_alpha_type_ 100.0 5E-44 1.1E-48 285.0 20.7 182 5-190 27-212 (212)
24 cd01911 proteasome_alpha prote 100.0 1.1E-43 2.4E-48 282.8 20.9 182 5-190 24-209 (209)
25 cd01906 proteasome_protease_Hs 100.0 2.1E-43 4.6E-48 274.9 21.9 180 9-190 1-182 (182)
26 cd03756 proteasome_alpha_arche 100.0 1.9E-43 4.1E-48 281.8 21.7 182 5-191 25-210 (211)
27 cd03754 proteasome_alpha_type_ 100.0 9E-44 2E-48 284.3 19.5 183 4-190 25-215 (215)
28 cd03749 proteasome_alpha_type_ 100.0 2E-43 4.3E-48 281.6 21.3 181 5-191 24-211 (211)
29 cd03753 proteasome_alpha_type_ 100.0 1.2E-42 2.6E-47 277.6 21.6 181 5-190 24-213 (213)
30 KOG0180|consensus 100.0 2.4E-42 5.3E-47 256.3 18.0 204 1-205 1-204 (204)
31 TIGR03691 20S_bact_alpha prote 100.0 6.1E-41 1.3E-45 269.4 21.9 180 6-194 25-211 (228)
32 KOG0185|consensus 100.0 4.5E-41 9.8E-46 260.6 16.6 198 6-205 39-245 (256)
33 KOG0176|consensus 100.0 6.9E-41 1.5E-45 253.6 16.7 185 6-195 32-225 (241)
34 KOG0174|consensus 100.0 1.4E-40 3E-45 251.3 16.9 195 5-202 16-210 (224)
35 KOG0177|consensus 100.0 5.3E-40 1.1E-44 247.3 18.2 189 8-198 1-191 (200)
36 KOG0178|consensus 100.0 8.4E-39 1.8E-43 244.4 16.6 190 6-197 29-223 (249)
37 KOG0173|consensus 100.0 1.7E-38 3.7E-43 248.5 17.3 190 4-197 33-222 (271)
38 KOG0175|consensus 100.0 5.7E-37 1.2E-41 240.6 17.3 191 5-198 68-258 (285)
39 KOG0183|consensus 100.0 3E-36 6.4E-41 231.0 14.8 184 5-194 27-216 (249)
40 KOG0181|consensus 100.0 5.5E-36 1.2E-40 226.5 13.8 187 5-196 29-219 (233)
41 PRK05456 ATP-dependent proteas 100.0 5.9E-35 1.3E-39 224.7 19.3 167 8-189 1-171 (172)
42 KOG0184|consensus 100.0 3.3E-35 7.1E-40 226.4 15.5 184 5-192 31-218 (254)
43 cd01913 protease_HslV Protease 100.0 4.3E-34 9.4E-39 218.5 19.2 165 9-189 1-170 (171)
44 TIGR03692 ATP_dep_HslV ATP-dep 100.0 4E-33 8.7E-38 213.2 18.8 165 9-189 1-170 (171)
45 KOG0182|consensus 100.0 8.2E-33 1.8E-37 211.8 18.6 193 6-202 34-232 (246)
46 KOG0863|consensus 100.0 2.3E-33 5E-38 217.2 15.0 186 5-196 29-221 (264)
47 cd01901 Ntn_hydrolase The Ntn 100.0 1.6E-30 3.4E-35 197.2 19.9 161 9-172 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.8 1.7E-17 3.6E-22 122.9 12.2 172 6-191 2-176 (178)
49 COG3484 Predicted proteasome-t 99.5 2E-12 4.4E-17 99.4 13.0 188 8-198 1-206 (255)
50 PF09894 DUF2121: Uncharacteri 97.4 0.019 4.2E-07 44.6 14.8 50 144-193 131-180 (194)
51 COG4079 Uncharacterized protei 96.7 0.05 1.1E-06 43.8 11.9 155 8-193 1-181 (293)
52 KOG3361|consensus 86.3 0.63 1.4E-05 34.1 2.3 43 123-166 72-114 (157)
53 PRK09732 hypothetical protein; 70.8 13 0.00029 27.3 5.3 40 156-199 5-44 (134)
54 COG3193 GlcG Uncharacterized p 68.3 27 0.00059 26.0 6.4 40 155-198 5-44 (141)
55 COG1754 Uncharacterized C-term 66.6 6.7 0.00015 32.6 3.2 74 109-188 77-152 (298)
56 PF03928 DUF336: Domain of unk 63.8 11 0.00024 27.4 3.6 39 156-198 1-39 (132)
57 COG4245 TerY Uncharacterized p 53.6 31 0.00066 27.2 4.6 41 162-202 22-62 (207)
58 PF12481 DUF3700: Aluminium in 43.0 1.8E+02 0.0038 23.5 8.1 50 10-65 44-93 (228)
59 KOG2599|consensus 41.8 2.1E+02 0.0045 24.0 10.0 94 76-177 157-263 (308)
60 PF07499 RuvA_C: RuvA, C-termi 41.8 13 0.00028 21.9 0.8 32 138-169 12-44 (47)
61 PRK02487 hypothetical protein; 37.3 1E+02 0.0022 23.3 5.3 36 155-195 20-55 (163)
62 COG3363 Archaeal IMP cyclohydr 36.8 1.8E+02 0.004 22.4 6.4 66 134-203 65-139 (200)
63 PF00538 Linker_histone: linke 35.1 69 0.0015 20.8 3.6 40 139-178 20-59 (77)
64 KOG0083|consensus 34.2 51 0.0011 24.5 3.0 146 5-176 6-164 (192)
65 cd04513 Glycosylasparaginase G 33.2 1.3E+02 0.0028 24.9 5.6 58 135-195 186-247 (263)
66 COG3140 Uncharacterized protei 33.1 61 0.0013 20.0 2.7 36 145-180 15-50 (60)
67 PF13983 YsaB: YsaB-like lipop 31.3 1.5E+02 0.0033 19.2 4.5 54 76-130 10-71 (77)
68 cd04512 Ntn_Asparaginase_2_lik 29.9 1.6E+02 0.0034 24.2 5.5 56 135-196 175-234 (248)
69 PF04485 NblA: Phycobilisome d 29.7 89 0.0019 19.2 3.1 23 156-178 20-42 (53)
70 PF10632 He_PIG_assoc: He_PIG 29.2 75 0.0016 16.8 2.3 22 106-129 5-26 (29)
71 cd04702 ASRGL1_like ASRGL1_lik 28.8 1.7E+02 0.0036 24.2 5.5 55 135-195 178-236 (261)
72 PF04539 Sigma70_r3: Sigma-70 26.9 1.1E+02 0.0024 19.5 3.5 27 66-92 5-31 (78)
73 PF14593 PH_3: PH domain; PDB: 24.7 46 0.001 23.4 1.4 14 117-130 36-49 (104)
74 PRK11508 sulfur transfer prote 24.7 1.8E+02 0.0038 20.7 4.3 35 56-94 39-73 (109)
75 PF15606 Toxin_55: Putative to 24.7 2E+02 0.0044 18.9 4.2 35 48-83 6-40 (77)
76 PF01242 PTPS: 6-pyruvoyl tetr 24.0 1.6E+02 0.0034 20.9 4.1 44 54-97 43-96 (123)
77 cd01262 PH_PDK1 3-Phosphoinosi 23.2 57 0.0012 22.3 1.6 13 117-129 24-36 (89)
78 PF08269 Cache_2: Cache domain 23.1 1.8E+02 0.0038 19.4 4.1 39 156-199 33-71 (95)
79 PF01713 Smr: Smr domain; Int 22.0 2E+02 0.0044 18.6 4.1 33 157-194 5-37 (83)
80 PRK14065 exodeoxyribonuclease 21.9 2.1E+02 0.0046 19.3 4.0 31 145-175 33-63 (86)
81 KOG0092|consensus 20.7 81 0.0018 24.9 2.1 85 15-99 76-170 (200)
82 smart00463 SMR Small MutS-rela 20.6 2.5E+02 0.0053 18.0 4.7 35 157-195 8-42 (80)
83 TIGR01710 typeII_sec_gspG gene 20.1 3.5E+02 0.0075 19.5 6.3 22 65-86 43-64 (134)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-54 Score=341.70 Aligned_cols=203 Identities=25% Similarity=0.464 Sum_probs=195.9
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR 80 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
.+||.++|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.+.+.++.+++.|++++++
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~ 80 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNK 80 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 48999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC-----
Q psy15275 81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE----- 155 (205)
Q Consensus 81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~----- 155 (205)
+++++.+++++++++|++|.+||++++|+||||++ ++|+||++||+|++ ++++++|+|+|+++++++||+.|+
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~-~~p~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 158 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEE-GKGVVYSYDPVGSY-ERETYSAGGSASSLIQPLLDNQVGRKNQN 158 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCC-CCEEEEEEcCccCe-eecCEEEEeecHHHHHHHHHHHHHhhccC
Confidence 99999999999999999888899999999999976 68999999999998 699999999999999999999975
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 156 ----PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 156 ----~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
++||++||++++.+||+.+.+||+.++++++|++|+++|++++.+|+|+|
T Consensus 159 ~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~ 212 (212)
T cd03757 159 NVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212 (212)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999987
No 2
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-51 Score=324.17 Aligned_cols=193 Identities=61% Similarity=1.145 Sum_probs=184.1
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
.+|+|+|||+++||||||+|++.+++..+..++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++.+++++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 36999999999999999999999999877777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 86 VLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 86 ~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
.+|++|++++|++|.+||+|++|+||||++ ++|+||++||+|++ ..+. ++|+|+|+++++++||+.|+++|+.+||+
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~-~~p~Ly~~D~~G~~-~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 158 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPD-GKPFICTMDLIGCP-SIPSDFVVSGTASEQLYGMCESLWRPDMEPDELF 158 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCC-CCEEEEEEcCCCcc-cccCCEEEEcccHHHHHHHHHhccCCCCCHHHHH
Confidence 999999999999888999999999999986 68999999999998 4556 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEe
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHV 200 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~ 200 (205)
+++++||+.+.+||+.++++++|++|+++|++++.+
T Consensus 159 ~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~ 194 (195)
T cd03759 159 ETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL 194 (195)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence 999999999999999999999999999999998876
No 3
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-49 Score=310.03 Aligned_cols=186 Identities=22% Similarity=0.287 Sum_probs=180.1
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|++.++|.++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+|..||+|++|+||||+ .||+||++||+|++ .++++.|+|+|+++++++||+.|+++|+.+||++++.
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~--~g~~L~~~dp~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~ 157 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDK--TGPGLYYVDSDGTR-LKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLAR 157 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeC--CCCEEEEEcCCceE-EEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999999999889999999999996 48999999999998 6999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+||+.+.+||..++++++|++|+++|++.
T Consensus 158 ~~l~~~~~rd~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 158 RAIYHATHRDAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred HHHHHHHHhcccCCCCeEEEEEcCCceEE
Confidence 99999999999999999999999999975
No 4
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.6e-49 Score=311.65 Aligned_cols=190 Identities=25% Similarity=0.350 Sum_probs=180.4
Q ss_pred cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhh-hhhhhcCCcCCHH
Q psy15275 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQN-LYELKENRKMSPK 85 (205)
Q Consensus 7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 85 (205)
+|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++|+++|..+|++.+++++|.+++ .++++++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999998888888999999999999999999999999999999999986 5667899999999
Q ss_pred HHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCCHH
Q psy15275 86 VLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLEPD 161 (205)
Q Consensus 86 ~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~~~ 161 (205)
.+++++++++|++| +|||+|++|+||||++ ++|+||++||+|++ +++++.|+|+|+++++++||+.|++ +||++
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~-~gp~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNE-GEPFLGYVDLLGTA-YEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCEEEEEEcCCccE-EECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 99999999999876 8999999999999975 58999999999998 6999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
||++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~ 195 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE 195 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence 9999999999999999999999999999999998754
No 5
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.3e-49 Score=309.73 Aligned_cols=189 Identities=19% Similarity=0.320 Sum_probs=179.6
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|++.++|.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-c-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275 89 AMISNMLYER-R-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFET 166 (205)
Q Consensus 89 ~~i~~~~~~~-r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l 166 (205)
+++++++|.+ | .|||++++|+||||++ ++|+||++||+|++ .+++++|+|+|+++++++||+.|+++||++||+++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~-~~p~Ly~~d~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l 159 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKV-EGPSLYYIDYLGTL-VKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL 159 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCC-CCcEEEEECCCcce-EECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999988653 3 3799999999999975 58999999999998 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcEEEEEEeCCcEEEEE
Q psy15275 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRH 199 (205)
Q Consensus 167 ~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~ 199 (205)
+.+||+.+.+||+.++++++|++|+++|++..+
T Consensus 160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~ 192 (193)
T cd03758 160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDLE 192 (193)
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCCeEeCC
Confidence 999999999999999999999999999987643
No 6
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.6e-48 Score=305.09 Aligned_cols=185 Identities=30% Similarity=0.481 Sum_probs=179.3
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
|+|+|||+++||||||+|++.+.|.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHH
Q psy15275 88 LAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETI 167 (205)
Q Consensus 88 a~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~ 167 (205)
+++|++++|.+++|||+|++|+||||++ ||+||.+||+|++ .++++.++|+|+++++++||+.|+++||++||++++
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~--g~~Ly~~d~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 157 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEE--GPHLYSLDPAGGI-IEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLA 157 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCC--CCEEEEECCCCCe-EECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999999999889999999999999975 7999999999998 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 168 AQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 168 ~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
.+||+.+.+||+.++++++|++|+++|+
T Consensus 158 ~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 158 VRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred HHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 9999999999999999999999999985
No 7
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-47 Score=301.29 Aligned_cols=187 Identities=21% Similarity=0.305 Sum_probs=178.9
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.+.++++.+++.|+..++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+| +||++++|+||+|++ ++|+||++||+|++ .+++++++|+|+++++++||+.|+++|+++||+++++
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~-~gp~ly~~d~~G~~-~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~ 157 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQ-NGGQVYSIPLGGML-IRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVK 157 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCC-CCcEEEEECCCCCE-EecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999998875 689999999999975 58999999999998 5889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+||+.+.+||+.++++++|++|+++|++++
T Consensus 158 ~al~~~~~rd~~~~~~~~i~~i~~~g~~~~ 187 (188)
T cd03762 158 NALSLAMSRDGSSGGVIRLVIITKDGVERK 187 (188)
T ss_pred HHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence 999999999999999999999999999765
No 8
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-48 Score=311.77 Aligned_cols=191 Identities=29% Similarity=0.403 Sum_probs=181.2
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
...|+|+|||+++||||||+|+|.++|.++..++.+|||+|+||++|++||+.+|++.++++++.+++.|++.+++++++
T Consensus 27 ~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v 106 (236)
T COG0638 27 KRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISV 106 (236)
T ss_pred HcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34579999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccC--CcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHH
Q psy15275 85 KVLLAMISNMLYERRF--GPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDD 162 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~--~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~e 162 (205)
+.+++++++++|.++. |||+|++|+||+|+ ++|+||++||+|++ .++++.|+|+|+++++++||++|+++|++||
T Consensus 107 ~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~-~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~ee 183 (236)
T COG0638 107 EALAKLLSNILQEYTQSGRPYGVSLLVAGVDD--GGPRLYSTDPSGSY-NEYKATAIGSGSQFAYGFLEKEYREDLSLEE 183 (236)
T ss_pred HHHHHHHHHHHHHhccCcccceEEEEEEEEcC--CCCeEEEECCCCce-eecCEEEEcCCcHHHHHHHHhhccCCCCHHH
Confidence 9999999999999876 99999999999998 48999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCcEEEEEEeC-CcEEEE
Q psy15275 163 LFETIAQALVNACERNAVSGWGAVVYIIEQ-DKVTVR 198 (205)
Q Consensus 163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~~-~g~~~~ 198 (205)
|++++++||+.+.+||..++++++|+++++ +|.+..
T Consensus 184 ai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~ 220 (236)
T COG0638 184 AIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKL 220 (236)
T ss_pred HHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEc
Confidence 999999999999999998889999999999 555543
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-47 Score=300.04 Aligned_cols=186 Identities=27% Similarity=0.455 Sum_probs=179.4
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|++.++|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+|+|||+|++|+||||+ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||++++.
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~--~~~~ly~~D~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~ 157 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDE--EGPHLYSLDPLGSI-IEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAI 157 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeC--CCCEEEEECCCCCE-EEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999999988999999999999997 48999999999999 6899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+||+.+.+||+.++++++|++++++|++.
T Consensus 158 ~~l~~~~~rd~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 158 RAIKSAIERDSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred HHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence 99999999999999999999999999654
No 10
>KOG0179|consensus
Probab=100.00 E-value=8.6e-48 Score=293.46 Aligned_cols=203 Identities=27% Similarity=0.429 Sum_probs=195.6
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR 80 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
.|||..+|+|+|||++.|++|+|+|+|.+.|..+.+++.+|||+++|+++++.+|+.+|+..|...++..+..|++++++
T Consensus 22 f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k 101 (235)
T KOG0179|consen 22 FSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNK 101 (235)
T ss_pred CCccccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC------
Q psy15275 81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW------ 154 (205)
Q Consensus 81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~------ 154 (205)
.|++..+|++|+..+|.+|++||++..++||+|++ |++.+|++||.|++ ++..+.|.|+++..++++|++..
T Consensus 102 ~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDee-GKG~VySyDPvGsy-er~~~~AgGsa~~mI~PfLDnQi~~kn~~ 179 (235)
T KOG0179|consen 102 KMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEE-GKGAVYSYDPVGSY-ERVTCRAGGSAASMIQPFLDNQIGHKNQN 179 (235)
T ss_pred cccHHHHHHHHHHHHhhcccccceeeeeeeccccc-CceeEEeecCCcce-eeeeeecCCcchhhhhhhhhhhccCcCcc
Confidence 99999999999999999999999999999999998 89999999999999 79999999999999999999763
Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 155 -----EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 155 -----~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
++.+++|+|+.|+.+++..|.|||..+|++++|+|++|+|++.+.+|+|.|
T Consensus 180 ~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 180 LENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred cccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence 246899999999999999999999999999999999999999999999986
No 11
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=6.4e-47 Score=307.41 Aligned_cols=191 Identities=18% Similarity=0.229 Sum_probs=181.3
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS 83 (205)
Q Consensus 4 ~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
+-.+|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++++++|+.+|++.+.+++|.+++.|+++++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 44579999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHH
Q psy15275 84 PKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDL 163 (205)
Q Consensus 84 ~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea 163 (205)
++.+|++|++++|.+|..|+.+++|+||||++ ||+||++||+|++ .+++++|+|+|+.+++++||+.|+++|+.+||
T Consensus 115 v~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~--gp~Ly~vDp~Gs~-~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa 191 (247)
T PTZ00488 115 VAAASKILANIVWNYKGMGLSMGTMICGWDKK--GPGLFYVDNDGTR-LHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA 191 (247)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCC--CCEEEEEcCCcce-eecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence 99999999999999886677777999999964 7999999999998 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 164 FETIAQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
++++++||+.+.+||..++++++|++|+++|++.
T Consensus 192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~ 225 (247)
T PTZ00488 192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKK 225 (247)
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEE
Confidence 9999999999999999999999999999999653
No 12
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-46 Score=295.47 Aligned_cols=188 Identities=31% Similarity=0.516 Sum_probs=180.7
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|++.++|..+..++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999987789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+|.+||++++|+||+|++ ++|+||.+||+|++ .+++++++|.|+++++++||+.|+++||++||++++.
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~-~~~~l~~id~~G~~-~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~ 158 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKG-GGPFLYYVDPLGSL-IEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVK 158 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCC-CCeEEEEECCCCCe-EecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999999877899999999999985 58999999999999 6889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+||+.+.++|+.++++++|++|+++|++.+
T Consensus 159 ~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~ 188 (189)
T cd01912 159 KAIDSAIERDLSSGGGVDVAVITKDGVEEL 188 (189)
T ss_pred HHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence 999999999999999999999999998754
No 13
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-46 Score=295.62 Aligned_cols=186 Identities=22% Similarity=0.252 Sum_probs=178.1
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+|+||||||+|+|.++|.++..++.+|||+|+++++|+++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
++|++.+|.++ .||+|++|+||||++ +|+||.+||+|++ .+++++|+|+|+++++++||++|+++||++||++++.
T Consensus 81 ~~l~~~l~~~~-~p~~v~~ivaG~d~~--g~~ly~~d~~G~~-~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~ 156 (189)
T cd03763 81 TMLKQHLFRYQ-GHIGAALVLGGVDYT--GPHLYSIYPHGST-DKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVC 156 (189)
T ss_pred HHHHHHHHHcC-CccceeEEEEeEcCC--CCEEEEECCCCCE-EecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 99999988764 499999999999974 7999999999999 6999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+||+.+.+||+.++++++|++|+++|+++.
T Consensus 157 ~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~ 186 (189)
T cd03763 157 EAIEAGIFNDLGSGSNVDLCVITKDGVEYL 186 (189)
T ss_pred HHHHHHHHhcCcCCCceEEEEEcCCcEEEe
Confidence 999999999999999999999999999865
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=6e-46 Score=297.59 Aligned_cols=191 Identities=21% Similarity=0.275 Sum_probs=176.5
Q ss_pred cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV 86 (205)
Q Consensus 7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
+|+|+|||+++||||||+|++.++|.++.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 48999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHH
Q psy15275 87 LLAMISNMLYER---RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDL 163 (205)
Q Consensus 87 la~~i~~~~~~~---r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea 163 (205)
++++|++++|.+ ++|||+|++|+||||+++++|+||++||+|+....++++|+|+|+++++++||+.|+++||.+||
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 999999988765 37999999999999963257999999999953257789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCc-------EEEEEEeCCcEEE
Q psy15275 164 FETIAQALVNACERNAVSGWG-------AVVYIIEQDKVTV 197 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~-------i~i~ii~~~g~~~ 197 (205)
++++.+||..+.++|..+++. ++|++|+++|++.
T Consensus 161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~ 201 (219)
T TIGR03690 161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR 201 (219)
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence 999999999999999877664 3999999999654
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-45 Score=295.38 Aligned_cols=187 Identities=18% Similarity=0.211 Sum_probs=174.0
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+. .++..++.+||++|++|++|+++|..+|++.+.+.++.+++.|++++++++++
T Consensus 24 v~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 102 (227)
T cd03750 24 VSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPV 102 (227)
T ss_pred HHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999884 56677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++|+++++. +| .|||+|++|+||||++ ||+||++||+|++ .+++++|+|+|+++++++||++|+++|++
T Consensus 103 ~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~--g~~Ly~~d~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~ms~ 179 (227)
T cd03750 103 SQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG--GPYLYQVDPSGSY-FTWKATAIGKNYSNAKTFLEKRYNEDLEL 179 (227)
T ss_pred HHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC--CCEEEEECCCCCE-EeeeEEEECCCCHHHHHHHHhhccCCCCH
Confidence 9999999998843 34 7999999999999974 8999999999998 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVT 196 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~ 196 (205)
+||++++++||+.+.++|. ++.++++++|+++ |.+
T Consensus 180 eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~ 215 (227)
T cd03750 180 EDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFR 215 (227)
T ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEE
Confidence 9999999999999999875 7899999999996 555
No 16
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-45 Score=292.74 Aligned_cols=185 Identities=14% Similarity=0.076 Sum_probs=169.0
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEec----CeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC-cCC
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVG----SHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR-KMS 83 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~ 83 (205)
|-+|||+++||||||+|+|.+.+.... .+.+|||+|+ +|++|+.||..+|++.+.+++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 458999999999999999998875543 4789999998 8999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHh----cc------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC----cceeecCchhhhhhh
Q psy15275 84 PKVLLAMISNMLYE----RR------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS----DFVVGGPCSDQLYGM 149 (205)
Q Consensus 84 ~~~la~~i~~~~~~----~r------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~----~~~a~G~g~~~~~~~ 149 (205)
++.+|+++++++++ .. .|||+|++|+||||++ .||+||++||+|++ .++ +|.|+|. +.+++++
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~-~Gp~LY~idpsG~~-~e~~a~~~~~AiG~-~~~a~~~ 156 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKG-EEPRLFLIYPQGNF-IEATPDTPFLQIGE-TKYGKPI 156 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECC-CCCEEEEECCCCCE-EeecCCCceeeeCC-chhhHHH
Confidence 99999999997544 11 4799999999999975 58999999999998 466 5689995 6999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 150 CETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 150 Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
||++|+++||++||++++++||+.+++||..++++++|++|+++|.+.
T Consensus 157 Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 157 LDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence 999999999999999999999999999999999999999999999887
No 17
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.2e-44 Score=291.21 Aligned_cols=193 Identities=20% Similarity=0.297 Sum_probs=178.2
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++|++||..+|++.+.+.++.++..|++.+++++++
T Consensus 26 v~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 104 (224)
T TIGR03633 26 VKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDV 104 (224)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999984 45667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYE--R--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~--~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++++++++. + +.|||+|++|+||+|+ ++|+||.+||.|++ .+++++++|+|+.+++++|++.|+++|++
T Consensus 105 ~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~--~~~~Ly~~D~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~~~ 181 (224)
T TIGR03633 105 ETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGAL-LEYKATAIGAGRQAVTEFLEKEYREDLSL 181 (224)
T ss_pred HHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC--CcCEEEEECCCCCe-ecceEEEECCCCHHHHHHHHHhccCCCCH
Confidence 9999999998754 3 2789999999999996 48999999999999 58899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
+||++++++||..+.+ |+.++++++|++|+++|..++.++.
T Consensus 182 eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~ 222 (224)
T TIGR03633 182 DEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV 222 (224)
T ss_pred HHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence 9999999999999888 8889999999999999977766544
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.3e-45 Score=289.69 Aligned_cols=184 Identities=11% Similarity=0.166 Sum_probs=172.4
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+.+..+..++.+|||+|+++++|++||..+|++.+.++++.+++.|++++++++++
T Consensus 26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v 105 (213)
T cd03752 26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPV 105 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999887766799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+++.|+.+++.+ +.|||+|++|++|||++ .||+||.+||+|++ .+++++|+|+|+.+++++||++|+++|++
T Consensus 106 ~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~-~g~~ly~~d~~G~~-~~~~~~a~G~gs~~~~~~Le~~y~~~ms~ 183 (213)
T cd03752 106 EQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKH-YGFQLYQSDPSGNY-SGWKATAIGNNNQAAQSLLKQDYKDDMTL 183 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCC-CCCEEEEECCCCCe-eeeeEEEECCCcHHHHHHHHHhccCCCCH
Confidence 99999999875432 36899999999999975 58999999999998 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
+||++++.+||..+.+||...+.+++|+++
T Consensus 184 eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 184 EEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999888999999875
No 19
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.4e-44 Score=295.49 Aligned_cols=188 Identities=16% Similarity=0.207 Sum_probs=176.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+++.++..++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|++.+++++++
T Consensus 28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 107 (253)
T PTZ00246 28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPV 107 (253)
T ss_pred HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999988766788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+++.++.+++.+ +.|||+|++|+||||++ ++|+||++||+|++ .+++++|+|+|+++++++||++|+++|++
T Consensus 108 ~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~-~gp~Ly~~D~~Gs~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 185 (253)
T PTZ00246 108 EQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDEN-LGYQLYHTDPSGNY-SGWKATAIGQNNQTAQSILKQEWKEDLTL 185 (253)
T ss_pred HHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCC-CCcEEEEECCCCCE-ecceEEEECCCcHHHHHHHHHhccCCCCH
Confidence 99999999875542 37899999999999975 58999999999998 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
+||++++++||+.+.++|..++++++|++|+++|
T Consensus 186 eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 186 EQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 9999999999999999999999999999999986
No 20
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.3e-44 Score=290.87 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=176.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+. .+...++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 33 v~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 111 (241)
T PRK03996 33 VKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGV 111 (241)
T ss_pred HHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999984 45567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++++++++.+ +.|||+|++|+||||++ ||+||.+||+|++ .+++++|+|.|+++++++||++|+++|++
T Consensus 112 ~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~--gp~Ly~id~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~ 188 (241)
T PRK03996 112 ETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG--GPRLFETDPSGAY-LEYKATAIGAGRDTVMEFLEKNYKEDLSL 188 (241)
T ss_pred HHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC--cCEEEEECCCCCe-ecceEEEECCCcHHHHHHHHHhcccCCCH
Confidence 99999999987543 27899999999999974 7999999999999 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK 201 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~ 201 (205)
+||++++++||+.+.++ ..++++++|++++++|..++.++
T Consensus 189 eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~ 228 (241)
T PRK03996 189 EEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS 228 (241)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence 99999999999999876 55789999999999987666554
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-44 Score=284.85 Aligned_cols=180 Identities=18% Similarity=0.333 Sum_probs=166.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+.. ++..++.+||++|+++++|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 24 v~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 102 (207)
T cd03755 24 VRKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTV 102 (207)
T ss_pred HHcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 468999999999999999999987654 4556688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+++++++++ |.+| .|||+|++|+||||++ ++|+||++||+|++ .+++++|+|+|+++++++||++|+++|++
T Consensus 103 ~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~-~~p~Ly~iD~~G~~-~~~~~~a~G~gs~~~~~~Le~~~~~~ms~ 180 (207)
T cd03755 103 EYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPD-GTPRLYQTDPSGTY-SAWKANAIGRNSKTVREFLEKNYKEEMTR 180 (207)
T ss_pred HHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCC-CCeEEEEECCCcCE-EcceEEEECCCCHHHHHHHHhhccCCCCH
Confidence 99999999988 4444 7899999999999986 68999999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
+||++++++||..+.+ .++.++||+++
T Consensus 181 eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 181 DDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999987 56789999875
No 22
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.8e-44 Score=279.91 Aligned_cols=183 Identities=28% Similarity=0.458 Sum_probs=169.3
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeecc-ccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADN-FQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
++|+|+|||+++|||+||+|++.+.|..+...+ .+|||+|+++++++++|..+|++.+.++++.+++.|++.++.++++
T Consensus 2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 81 (190)
T PF00227_consen 2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP 81 (190)
T ss_dssp HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence 589999999999999999999999998876666 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----HHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC-cceeecCchhhhhhhhhhcCCCCCC
Q psy15275 85 KVLLAMISNM----LYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWEPNLE 159 (205)
Q Consensus 85 ~~la~~i~~~----~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~ 159 (205)
+.+++.++.+ ++..++||+++++|+||||++ ++|+||.+||+|++ .++ ++.|+|+|+++++++||+.|+++|+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~-~~~~l~~vd~~G~~-~~~~~~~aiG~g~~~~~~~l~~~~~~~~~ 159 (190)
T PF00227_consen 82 EYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDED-GGPQLYSVDPSGSY-IECKRFAAIGSGSQFAQPILEKLYKPDLS 159 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETT-TEEEEEEEETTSEE-EEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred hhhhhhhHHHHhhhcccccccCccccceeeeeccc-cccceeeecccccc-ccccccccchhcchhhhHHHHhhccCCCC
Confidence 9666666654 444458999999999999986 57999999999999 588 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
++||++++.+||+.+.++|..++++++|++|
T Consensus 160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 160 LEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999999999999986
No 23
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-44 Score=285.02 Aligned_cols=182 Identities=15% Similarity=0.154 Sum_probs=167.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.++ .+...++.+|||+|++|++|+++|..+|++.+.+++|.+++.|++++++++++
T Consensus 27 ~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v 105 (212)
T cd03751 27 VENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPV 105 (212)
T ss_pred HhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 36899999999999999999999886 44456788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++|+++++.+ .+|||+|++|+||||++ ||+||++||+|++ .++++.|+|+|+.+++++||++|+++||+
T Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~--gp~Ly~~D~~Gs~-~~~~~~a~G~g~~~a~~~Lek~~~~dms~ 182 (212)
T cd03751 106 KVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD--GPQLYMIEPSGVS-YGYFGCAIGKGKQAAKTELEKLKFSELTC 182 (212)
T ss_pred HHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC--cCEEEEECCCCCE-EeeEEEEECCCCHHHHHHHHHhccCCCCH
Confidence 99999999976553 27899999999999964 7999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
+||+++++++|..+++.+.....+++|.++
T Consensus 183 eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 183 REAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999876667788998874
No 24
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.1e-43 Score=282.80 Aligned_cols=182 Identities=19% Similarity=0.309 Sum_probs=170.2
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+||++++||||||+|++.+.+ ++..++.+|||+|+++++++++|..+|++.+.+.++.+++.|++++++++++
T Consensus 24 ~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~ 102 (209)
T cd01911 24 VKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPV 102 (209)
T ss_pred HHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999999876 4456899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYE--R--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~--~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+|++++++++. + +.|||+|++||||||++ ++|+||.+||.|++ .+++++++|+|+.+++++||+.|+++|++
T Consensus 103 ~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~-~~~~Ly~iD~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~ms~ 180 (209)
T cd01911 103 EVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEE-GGPQLYQTDPSGTY-FGYKATAIGKGSQEAKTFLEKRYKKDLTL 180 (209)
T ss_pred HHHHHHHHHHHHHHhcccCccChhheEEEEEEcCC-CCcEEEEECCCCCe-eeeeEEEeCCCcHHHHHHHHHhcccCCCH
Confidence 9999999998743 3 26899999999999986 68999999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
+||++++.+||+.+.++|. ++.+++|+++
T Consensus 181 ~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 181 EEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999 9999999875
No 25
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.1e-43 Score=274.95 Aligned_cols=180 Identities=29% Similarity=0.442 Sum_probs=172.2
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|++.+.+.....++.+|||+|+++++|+++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC--CcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275 89 AMISNMLYERRF--GPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFET 166 (205)
Q Consensus 89 ~~i~~~~~~~r~--~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l 166 (205)
++|++++|.++. |||++++|+||+|++ ++|+||.+||+|++ .+++++|+|+|+++++++||+.|+++||.+||+++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~-~~~~Ly~id~~G~~-~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l 158 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEE-GGPQLYSVDPSGSY-IEYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL 158 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCC-CCcEEEEECCCCCE-eeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence 999999998874 999999999999985 58999999999999 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcEEEEEE
Q psy15275 167 IAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 167 ~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
+.+||+.+.++|..++.+++|++|
T Consensus 159 ~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 159 ALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999999989999999875
No 26
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-43 Score=281.80 Aligned_cols=182 Identities=18% Similarity=0.282 Sum_probs=169.7
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+. .++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|++++++++++
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~ 103 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV 103 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999874 45567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+++.++++++.+ +.|||++++|+||||+. +|+||.+||+|++ .+++++++|+|+++++++||+.|+++|++
T Consensus 104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~--~~~ly~vd~~G~~-~~~~~~a~G~g~~~~~~~Le~~~~~~m~~ 180 (211)
T cd03756 104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDG--GPRLFETDPSGAY-NEYKATAIGSGRQAVTEFLEKEYKEDMSL 180 (211)
T ss_pred HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCC--CCEEEEECCCCCe-eeeEEEEECCCCHHHHHHHHhhccCCCCH
Confidence 99999999987543 37899999999999974 8999999999998 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIE 191 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~ 191 (205)
+||++++.+||..+.+++. ++.+++|++|+
T Consensus 181 ~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 181 EEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred HHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999988776 88999999986
No 27
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-44 Score=284.27 Aligned_cols=183 Identities=17% Similarity=0.276 Sum_probs=167.7
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS 83 (205)
Q Consensus 4 ~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
.+++|+|+|||+++||||||+|++.+.+.+ ..++.+|||+|+++++|++||+.+|++.+.+++|.+++.|+++++++++
T Consensus 25 ~~~~g~t~igi~~~d~Vvlaad~r~~~~~i-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~ 103 (215)
T cd03754 25 VKNAGLTSVAVRGKDCAVVVTQKKVPDKLI-DPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMP 103 (215)
T ss_pred HhcCCccEEEEEeCCEEEEEEecccccccc-CCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 345789999999999999999999887643 4458899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCC--
Q psy15275 84 PKVLLAMISNM--LYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPN-- 157 (205)
Q Consensus 84 ~~~la~~i~~~--~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~-- 157 (205)
++.+|++++++ +|.++ .|||++++|+||||++ ++|+||++||+|++ .++++.|+|+|+++++++||++|+++
T Consensus 104 v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~-~gp~Ly~~Dp~Gs~-~~~~~~a~G~gs~~~~~~Le~~~~~~~~ 181 (215)
T cd03754 104 VDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEE-LGPQLYKCDPAGYF-AGYKATAAGVKEQEATNFLEKKLKKKPD 181 (215)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCC-CCeEEEEEcCCccE-EeEEEEEECCCcHHHHHHHHHHhccccc
Confidence 99999999996 45554 6899999999999975 58999999999999 69999999999999999999999985
Q ss_pred C--CHHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 158 L--EPDDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 158 ~--~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
| +++||++++++||..+.+||.. +++++|+++
T Consensus 182 ~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 182 LIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 7 9999999999999999999975 889999875
No 28
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-43 Score=281.58 Aligned_cols=181 Identities=17% Similarity=0.196 Sum_probs=167.7
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+.+. .++.+|||+|+++++|++||+.+|++.+.++++.+++.|++++++++++
T Consensus 24 v~~G~t~IgIk~~dgVvlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 100 (211)
T cd03749 24 VKQGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPV 100 (211)
T ss_pred HhcCCCEEEEEeCCEEEEEEeccCcccc---CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3689999999999999999999987653 4577999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--c--cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC--CCC
Q psy15275 85 KVLLAMISNMLYE--R--RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE--PNL 158 (205)
Q Consensus 85 ~~la~~i~~~~~~--~--r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~ 158 (205)
+.+++.++.+++. + +.|||+|++|+||||++ ||+||++||+|++ .+++++|+|+|+++++++||++|+ ++|
T Consensus 101 ~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~--gp~Ly~~Dp~G~~-~~~~~~a~G~g~~~a~~~Le~~~~~~~~m 177 (211)
T cd03749 101 SRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES--GPHLFQTCPSGNY-FEYKATSIGARSQSARTYLERHFEEFEDC 177 (211)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC--CCeEEEECCCcCE-eeeeEEEECCCcHHHHHHHHHhhccccCC
Confidence 9999999997764 2 37899999999999974 7999999999998 689999999999999999999998 699
Q ss_pred CHHHHHHHHHHHHHHHHhhcc-ccCCcEEEEEEe
Q psy15275 159 EPDDLFETIAQALVNACERNA-VSGWGAVVYIIE 191 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~~~d~-~~~~~i~i~ii~ 191 (205)
+++||+++++++|+.++++|. .+++++||++|+
T Consensus 178 s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 178 SLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 999999999999999999887 889999999984
No 29
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-42 Score=277.55 Aligned_cols=181 Identities=16% Similarity=0.229 Sum_probs=166.8
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|++.+.+. +..++.+||++|+++++|+++|+.+|++.+.+.++.+++.|++++++++++
T Consensus 24 ~~~G~t~igik~~dgVvlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 102 (213)
T cd03753 24 IKLGSTAIGIKTKEGVVLAVEKRITSPL-MEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTV 102 (213)
T ss_pred HhcCCCEEEEEeCCEEEEEEecccCCcC-cCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3689999999999999999999998654 556788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---------cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275 85 KVLLAMISNMLYER---------RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE 155 (205)
Q Consensus 85 ~~la~~i~~~~~~~---------r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 155 (205)
+.+++.+++++|.. +.|||+|++|+||||++ ||+||.+||+|++ .+++++|+|+|+++++++|+++|+
T Consensus 103 ~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~--gp~Ly~vd~~G~~-~~~~~~a~G~~~~~~~~~L~~~~~ 179 (213)
T cd03753 103 ESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDEN--GPQLFHTDPSGTF-TRCDAKAIGSGSEGAQSSLQEKYH 179 (213)
T ss_pred HHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCC--CCEEEEECCCCCe-ecccEEEECCCcHHHHHHHHhhcc
Confidence 99999999988652 14899999999999974 8999999999998 689999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
++|+++||++++++||+.+.+++ .++.+++|++|
T Consensus 180 ~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 180 KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999988765 66788999875
No 30
>KOG0180|consensus
Probab=100.00 E-value=2.4e-42 Score=256.30 Aligned_cols=204 Identities=63% Similarity=1.157 Sum_probs=198.1
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR 80 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
|++++.+|+++||+++|++|.||+|.|........+.+++|||+++|++++|.+|+..|.|.|.++++...+.|++++++
T Consensus 1 m~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180|consen 1 MSIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CcceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhc
Confidence 89999999999999999999999999988877777899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
.+.|+.+++++|.++|++|+-||.+..++||.|++ ++|+|...|..|....+.+|++.|.++...++.+|..|+|+|+.
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~-~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmep 159 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDD-NKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEP 159 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCC-CCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999996 79999999999998778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
|+..+.+..+|..+.+||+.+|+...+.+|+||++..+.++.|+|
T Consensus 160 d~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 160 DELFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD 204 (204)
T ss_pred HHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence 999999999999999999999999999999999999999999987
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=6.1e-41 Score=269.43 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=161.4
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCCH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMSP 84 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (205)
++|+|+|||+++||||||+|++. .+.+|||+|+||++|+++|+.+|++.+++..+.+++.|++.++ .++++
T Consensus 25 ~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v 96 (228)
T TIGR03691 25 ARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTG 96 (228)
T ss_pred HcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Confidence 57999999999999999999962 4678999999999999999999999999999999999999987 68999
Q ss_pred HHHHHHHHHHHHhc---cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER---RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~---r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+|+.+++.++.. +.|||+|++|+||||++..||+||.+||+|++ .+++ +.|+|+|++.++++||++|+++||+
T Consensus 97 ~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~-~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~ 175 (228)
T TIGR03691 97 RGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSI-VDERGFVVMGGTTEPIATALKESYRDGLSL 175 (228)
T ss_pred HHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCc-eeccceEEECCChHHHHHHHHHhcCCCCCH
Confidence 99999888765432 46899999999999852258999999999998 4655 8999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh--hccccCCcEEEEEEeCCc
Q psy15275 161 DDLFETIAQALVNACE--RNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~--~d~~~~~~i~i~ii~~~g 194 (205)
+||++++++||+.+.+ ++..+..+++|.++++++
T Consensus 176 eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 176 ADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred HHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence 9999999999999964 667888999999999865
No 32
>KOG0185|consensus
Probab=100.00 E-value=4.5e-41 Score=260.59 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=186.1
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhh-hhhhcCCcCCH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNL-YELKENRKMSP 84 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~~ 84 (205)
-+||++||+||+|||+||+|+..|+|++.+..+.+|+++|+||+++|+||..+|+|.+.+.+.....+ ..+..|+.+.|
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P 118 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP 118 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999987544 44778899999
Q ss_pred HHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC---CCCC
Q psy15275 85 KVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE---PNLE 159 (205)
Q Consensus 85 ~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---~~~~ 159 (205)
+.++++|.+++|.+| ++|++..+++||+|.+ +.|+|..+|..|.. ++.+..|+|.|.+.+.++|++.|. ++++
T Consensus 119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~-g~~~lg~V~~~G~~-Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s 196 (256)
T KOG0185|consen 119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNT-GEPFLGYVDLLGVA-YESPVVATGFGAHLALPLLRDEWEKKGEDLS 196 (256)
T ss_pred HHHHHHHHHHHHHhhhccCchhhheeEeeecCC-CCeeEEEEeecccc-ccCchhhhhhHHHhhhHHHHHhhhccchhhH
Confidence 999999999999987 9999999999999985 78999999999998 588999999999999999999997 6789
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD 205 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~ 205 (205)
.+||..++.+||+.+..||+.+..++++++|+++|++++ .++++||
T Consensus 197 ~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~W~ 245 (256)
T KOG0185|consen 197 REEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTNWD 245 (256)
T ss_pred HHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeecch
Confidence 999999999999999999999999999999999999988 5778886
No 33
>KOG0176|consensus
Probab=100.00 E-value=6.9e-41 Score=253.64 Aligned_cols=185 Identities=16% Similarity=0.207 Sum_probs=171.1
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
+.|+|.|||+.++||||++++|.++..+ .+....||++|++||+|++||+.+|++.++++.|.+++.|.+.|+++++++
T Consensus 32 kLGsTaIGv~TkEgVvL~vEKritSpLm-~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VE 110 (241)
T KOG0176|consen 32 KLGSTAIGVKTKEGVVLAVEKRITSPLM-EPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVE 110 (241)
T ss_pred hcCCceeeeeccceEEEEEeccccCccc-CchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHH
Confidence 4799999999999999999999999765 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-------c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC
Q psy15275 86 VLLAMISNMLYER-------R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP 156 (205)
Q Consensus 86 ~la~~i~~~~~~~-------r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~ 156 (205)
.+.+.+|++.... + .|||||++|+||+|.+ ||+||+.||+|++ ..+++-|+|+|+.-+.+.|++.|++
T Consensus 111 s~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~--gpqL~h~dPSGtf-~~~~AKAIGSgsEga~~~L~~e~~~ 187 (241)
T KOG0176|consen 111 SLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET--GPQLYHLDPSGTF-IRYKAKAIGSGSEGAESSLQEEYHK 187 (241)
T ss_pred HHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC--CceEEEeCCCCce-EEecceeccccchHHHHHHHHHHhh
Confidence 9999999975321 1 5899999999999974 8999999999999 6999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
+++++||+.+++..|+..++... +..|+++.+++++|-
T Consensus 188 ~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~ 225 (241)
T KOG0176|consen 188 DLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGE 225 (241)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCc
Confidence 99999999999999999998655 457999999999853
No 34
>KOG0174|consensus
Probab=100.00 E-value=1.4e-40 Score=251.28 Aligned_cols=195 Identities=23% Similarity=0.366 Sum_probs=185.1
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
-..|||++|++|++||||++|+|.+.|..+.++-.+|+.+|.|+|+||-||..+|.|.+.+.++-++..|..++++++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
...|+.++++.|++|.. +.+++|+||||+. .|.++|.|---|.. .+.+++.-|+||.|++++++.+|+|+|++||++
T Consensus 96 ~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~-~gGqVY~iplGG~l-~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~ 172 (224)
T KOG0174|consen 96 HTAASLFREICYNYREM-LSAGLIVAGWDEK-EGGQVYSIPLGGSL-TRQPFAIGGSGSTFIYGFCDANWRPNMTLEECV 172 (224)
T ss_pred HHHHHHHHHHHHhCHHh-hhcceEEeecccc-cCceEEEeecCceE-eecceeeccCCceeeeeeehhhcCCCCCHHHHH
Confidence 99999999999998743 7899999999997 68999999777776 688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
.++.+|+..+++||-.+|+.+.+.+|+++|++++.++.
T Consensus 173 ~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 173 RFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPG 210 (224)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecC
Confidence 99999999999999999999999999999999998765
No 35
>KOG0177|consensus
Probab=100.00 E-value=5.3e-40 Score=247.30 Aligned_cols=189 Identities=21% Similarity=0.345 Sum_probs=180.9
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
+.+++||++.|+|++|+|+..+++.++..++.+|++++++++.|+.+|..+|+.++.++++..++.|++++|.+++|+.+
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-c-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHH
Q psy15275 88 LAMISNMLYER-R-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFE 165 (205)
Q Consensus 88 a~~i~~~~~~~-r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~ 165 (205)
|+++++.+... | .+||.|++|+||+|++ .+|.||++|..|+. .+.+|.+.|.|+.|+.++|+++|+|+||.+||+.
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~-~gp~L~~iDyla~~-~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 81 AHFTRRELAESLRSRTPYQVNILVAGYDPE-EGPELYYIDYLATL-VSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeccCCC-CCCceeeehhhhhc-ccCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence 99999988764 5 7899999999999997 67999999999998 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 166 TIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 166 l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+..+|+.++.+|-.....++.+.+|+|||++..
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~ 191 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKL 191 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCCceec
Confidence 999999999999999999999999999998865
No 36
>KOG0178|consensus
Probab=100.00 E-value=8.4e-39 Score=244.44 Aligned_cols=190 Identities=12% Similarity=0.154 Sum_probs=177.3
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
.+.+|+|||-++||||||++++.++..+-.....+||++|+|+|+|+++|+++|+..|++.+|..+|.|.+.+|+++|++
T Consensus 29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e 108 (249)
T KOG0178|consen 29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE 108 (249)
T ss_pred hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 46789999999999999999999988877778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC-CH
Q psy15275 86 VLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL-EP 160 (205)
Q Consensus 86 ~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~-~~ 160 (205)
+|++.+|+..+.+. .||||||+|.+|||.. .|.+||+-||+|++ ..|++.++|.++..+++.|++.|+++. ++
T Consensus 109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~-~gyqLy~SdPSGny-~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~ 186 (249)
T KOG0178|consen 109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDR-YGYQLYQSDPSGNY-GGWKATCIGANSGAAQSMLKQDYKDDENDL 186 (249)
T ss_pred HHHHHHHHHHHHHhhccCcCCCceeeeeeceecC-cceEEEecCCCCCc-cccceeeeccchHHHHHHHHhhhccccccH
Confidence 99999999765432 7999999999999986 78999999999999 699999999999999999999999875 59
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+||+.+|++.|....+.+..+.+.+||+.+++++.+.
T Consensus 187 ~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~ 223 (249)
T KOG0178|consen 187 EEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT 223 (249)
T ss_pred HHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence 9999999999999999998999999999999987665
No 37
>KOG0173|consensus
Probab=100.00 E-value=1.7e-38 Score=248.54 Aligned_cols=190 Identities=22% Similarity=0.279 Sum_probs=179.6
Q ss_pred ccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS 83 (205)
Q Consensus 4 ~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
.+..|||++|+.++||||+++|+|.+.|..+...+..||+.+.++|+||.+|..+|...+-+.+.++++.|++..++++.
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r 112 (271)
T KOG0173|consen 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR 112 (271)
T ss_pred ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHH
Q psy15275 84 PKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDL 163 (205)
Q Consensus 84 ~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea 163 (205)
+-...+++.+.++.+.. -.++.+|+||+|+. |||||++-|.|+. ..-+|.+.|+|+..+++.||.+|+|||++|||
T Consensus 113 Vv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~T--GpHLy~i~phGSt-d~~Pf~alGSGslaAmsvlEsr~k~dlt~eea 188 (271)
T KOG0173|consen 113 VVTALRMLKQHLFRYQG-HIGAALILGGVDPT--GPHLYSIHPHGST-DKLPFTALGSGSLAAMSVLESRWKPDLTKEEA 188 (271)
T ss_pred eeeHHHHHHHHHHHhcC-cccceeEEccccCC--CCceEEEcCCCCc-CccceeeeccchHHHHHHHHHhcCcccCHHHH
Confidence 99999999998887642 36899999999995 8999999999998 58899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 164 FETIAQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
.+|+.+|+...+.+|..||+|+++|||++.+++.
T Consensus 189 ~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 189 IKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred HHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 9999999999999999999999999999888766
No 38
>KOG0175|consensus
Probab=100.00 E-value=5.7e-37 Score=240.57 Aligned_cols=191 Identities=21% Similarity=0.271 Sum_probs=183.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
-.+|||++|++++.|||+|+|+|.|.|..+.+...+||..||++++-..+|-.+|++..-+.+..+|+.|++++++.+++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
...+++|++++|++|...+.+..+++|||+. ||.||++|..|+- ...+-+++|+|+.+|+++|+..|++||+.+||.
T Consensus 148 saASKllsN~~y~YkGmGLsmGtMi~G~Dk~--GP~lyYVDseG~R-l~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~ 224 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGMGLSMGTMIAGWDKK--GPGLYYVDSEGTR-LSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAY 224 (285)
T ss_pred HHHHHHHHHHHhhccCcchhheeeEeeccCC--CCceEEEcCCCCE-ecCceEeecCCCceeEEeeccCCCCCCCHHHHH
Confidence 9999999999999997678899999999985 8999999999998 588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+|+++++..+..||..+|+-+.++.|+.+|....
T Consensus 225 ~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v 258 (285)
T KOG0175|consen 225 DLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV 258 (285)
T ss_pred HHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence 9999999999999999999999999999997754
No 39
>KOG0183|consensus
Probab=100.00 E-value=3e-36 Score=231.01 Aligned_cols=184 Identities=17% Similarity=0.273 Sum_probs=168.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+||++++|+|+|+.+++... .+...+...||..+++|++|+++|+.+|++.|+++.|.+|+.|++..+.|+++
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv 105 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV 105 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence 46899999999999999999998665 44567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCC--C
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPN--L 158 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~ 158 (205)
+.+.++|+.+.+.+. .||||+++|++|||++ +.|+||++||+|.| .+|.+.|+|.+++.+..+||++|.++ .
T Consensus 106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~-g~p~lyqtePsG~f-~ewka~aiGr~sk~VrEflEK~y~e~~~~ 183 (249)
T KOG0183|consen 106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPD-GTPRLYQTEPSGIF-SEWKANAIGRSSKTVREFLEKNYKEEAIA 183 (249)
T ss_pred HHHHHHHHHhhhhhhccCCcccccceEEEEeeCCC-CCeeeEeeCCCcch-hhhhccccccccHHHHHHHHHhccccccc
Confidence 999999999765432 7899999999999998 68999999999999 69999999999999999999999866 7
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 159 EPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
+..++++|++++|.+.... .+.+++++++++++
T Consensus 184 ~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~ 216 (249)
T KOG0183|consen 184 TEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRK 216 (249)
T ss_pred ccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCC
Confidence 8899999999999999875 45799999999887
No 40
>KOG0181|consensus
Probab=100.00 E-value=5.5e-36 Score=226.49 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=172.1
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|.+.|||+-.||||||++++..+.. ......+|+++|.++|+|.+||..+|++.+++..|..++.|...+++++++
T Consensus 29 v~~G~~SvGi~A~nGvVlatekk~~s~L-~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt 107 (233)
T KOG0181|consen 29 VVNGQTSVGIKAANGVVLATEKKDVSPL-VDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT 107 (233)
T ss_pred HhCCCCceeeeecCceEEEeccCCCCcc-chhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence 3589999999999999999999776643 456888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
..+...++.+++++. .||||+++++||||.. +|.||++||+|++ +.|++.|.|.+...++++||++|.+++.+
T Consensus 108 ~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~--~p~LyQvdPSGsy-f~wkatA~Gkn~v~aktFlEkR~~edlel 184 (233)
T KOG0181|consen 108 TQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEG--GPLLYQVDPSGSY-FAWKATAMGKNYVNAKTFLEKRYNEDLEL 184 (233)
T ss_pred HHHHHHHHHHHHHHhhcCCccccceEEEEeecCCC--ceeEEEECCccce-eehhhhhhccCcchHHHHHHHHhcccccc
Confidence 999999999887653 7999999999999984 8999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT 196 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~ 196 (205)
++++..++..|++.++... +.++++|+++..++++
T Consensus 185 dd~ihtailtlkE~fege~-~~~nieigv~~~~~F~ 219 (233)
T KOG0181|consen 185 DDAIHTAILTLKESFEGEM-TAKNIEIGVCGENGFR 219 (233)
T ss_pred chHHHHHHHHHHHHhcccc-ccCceEEEEecCCcee
Confidence 9999999999999998765 4689999999977665
No 41
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=5.9e-35 Score=224.69 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=146.5
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV 86 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.||..+|+|.+.+.++.+++.|+. +. .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999998872 21 466
Q ss_pred HHHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccC-CcceeecCchhhhhhhhhhcCC-CCCCHHHH
Q psy15275 87 LLAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQP-SDFVVGGPCSDQLYGMCETLWE-PNLEPDDL 163 (205)
Q Consensus 87 la~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~-~~~~~~ea 163 (205)
+++.+..+ ...+ .+|+.+++|++ | .|+||.+||.|+..++ .++.++|+|+.+++++|+++|+ |+| ||
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d----~~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA 145 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIVA--D----KEHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SA 145 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEEE--c----CCcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence 66655443 2233 35788999994 4 3799999999998423 2799999999999999999999 999 99
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEE
Q psy15275 164 FETIAQALVNACERNAVSGWGAVVYI 189 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~i~i~i 189 (205)
++++++|++.+.+||..+++++++-.
T Consensus 146 ~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 146 EEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred HHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 99999999999999999999998864
No 42
>KOG0184|consensus
Probab=100.00 E-value=3.3e-35 Score=226.36 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=164.7
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++++|+||||||||||+++++.+++..+. ...++|||.|++||+|+++|+.+|.+.+.+++|.++..|+-+++.++|.
T Consensus 31 ven~~T~IGIk~kdGVVl~vEKli~SkLy~-p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~ 109 (254)
T KOG0184|consen 31 VENSGTCIGIKCKDGVVLAVEKLITSKLYE-PGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPG 109 (254)
T ss_pred HhcCCcEEEEecCCeEEEEEeeeecccccc-cCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCch
Confidence 468999999999999999999999987764 6888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
..+++.+...++-.. .||||++.++++||. +||+||.++|+|.+ +.++.+|+|.|.+.+++.||+.--.+|+.
T Consensus 110 ~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~--~g~~LymiepSG~~-~~Y~~aaiGKgrq~aKtElEKL~~~~mt~ 186 (254)
T KOG0184|consen 110 KHLADRVADYVHAFTLYSSVRPFGASTILGSYDD--EGPQLYMIEPSGSS-YGYKGAAIGKGRQAAKTELEKLKIDEMTC 186 (254)
T ss_pred HHHHHHHHhhhheeehhhccccccceEEEEEEeC--CCceEEEEcCCCCc-cceeeeeccchhHHHHHHHHhcccccccH
Confidence 999999999876543 689999999999996 48999999999998 69999999999999999999998789999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeC
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQ 192 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~ 192 (205)
+|+++.+.+.|..+.+......-.+|+.++..
T Consensus 187 ~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~ 218 (254)
T KOG0184|consen 187 KELVKEAAKIIYKVHDENKDKEFEIEMGWVGE 218 (254)
T ss_pred HHHHHHHHheeEeecccccCcceEEEEEEEEe
Confidence 99999999999887654332233466777764
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=4.3e-34 Score=218.51 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=142.4
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecC-eEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGS-HMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|+.+|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999877663 44
Q ss_pred HHHHHHHHHhccCCcce-eeeEEEEecCCCCCcEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcCCCC-CCHHHH
Q psy15275 88 LAMISNMLYERRFGPYF-VEPMVVGLDPETAEPIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLWEPN-LEPDDL 163 (205)
Q Consensus 88 a~~i~~~~~~~r~~P~~-v~~iv~G~d~~~~~p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~~~~ea 163 (205)
++.+..+ ...+.+|+. +.++++ | .++||.+||.|+.. ++ ++.++|+|+.+++++||.+|+++ |+ +
T Consensus 76 a~l~~~l-~~~~~~~~l~a~~iv~--~----~~~ly~id~~G~~i-e~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~ 144 (171)
T cd01913 76 VELAKDW-RTDRYLRRLEAMLIVA--D----KEHTLLISGNGDVI-EPDDGIAAIGSGGNYALAAARALLDHTDLS---A 144 (171)
T ss_pred HHHHHHH-HhccCcCceEEEEEEe--C----CCcEEEECCCCCEe-ccCCCeEEEeCCHHHHHHHHHHhhccCCCC---H
Confidence 5544443 233444665 666654 3 35899999999984 65 59999999999999999999995 99 6
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEE
Q psy15275 164 FETIAQALVNACERNAVSGWGAVVYI 189 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~i~i~i 189 (205)
.+++.+|++.+.+||+.+++++++..
T Consensus 145 ~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 145 EEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 69999999999999999999998764
No 44
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=4e-33 Score=213.20 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=141.7
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|+.+|..+|+|.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999887632 3666
Q ss_pred HHHHHHHHHhccCCc-ceeeeEEEEecCCCCCcEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcC-CCCCCHHHH
Q psy15275 88 LAMISNMLYERRFGP-YFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLW-EPNLEPDDL 163 (205)
Q Consensus 88 a~~i~~~~~~~r~~P-~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~-~~~~~~~ea 163 (205)
++.++++ ..++.+| +.+.++++ | .++||.+||.|+.. ++ ++.++|+|+.+++++||.+| +++|+ |
T Consensus 76 a~l~~~~-~~~~~~~~l~a~~iv~--~----~~~ly~i~~~G~~i-e~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a 144 (171)
T TIGR03692 76 VELAKDW-RTDRYLRRLEAMLIVA--D----KETSLLISGTGDVI-EPEDGIAAIGSGGNYALAAARALLRNTDLS---A 144 (171)
T ss_pred HHHHHHH-hhcccccccEEEEEEE--c----CCCEEEEcCCCcEe-ccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---H
Confidence 7776663 2223223 34666665 3 25899999999985 53 69999999999999999999 47777 9
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEE
Q psy15275 164 FETIAQALVNACERNAVSGWGAVVYI 189 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~i~i~i 189 (205)
++++.++++.+.+||+.+++++++..
T Consensus 145 ~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 145 EEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999999998864
No 45
>KOG0182|consensus
Probab=100.00 E-value=8.2e-33 Score=211.75 Aligned_cols=193 Identities=18% Similarity=0.260 Sum_probs=176.6
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
+.|-|.||++++|++|+++.++++..+ +.++....+|+|.++|+|+++|..+|++..++++|.++.++++.+|.++|++
T Consensus 34 ~~gltsVavrgkDcavvvsqKkvpDKL-ld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~D 112 (246)
T KOG0182|consen 34 QAGLTSVAVRGKDCAVVVTQKKVPDKL-LDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCD 112 (246)
T ss_pred cCCCceEEEcCCceEEEEecccCcccc-cccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 458999999999999999999998755 5678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCC--CC
Q psy15275 86 VLLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPN--LE 159 (205)
Q Consensus 86 ~la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--~~ 159 (205)
.|++.++++. |.++ +||+||.+++.|+|++ .||.+|.+||.|-+ ..+++.+.|.....+.++||++|+++ ++
T Consensus 113 iL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E-~gP~vYk~DpAGyy-~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t 190 (246)
T KOG0182|consen 113 ILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEE-RGPSVYKTDPAGYY-YGFKATAAGVKQQEATSFLEKKYKKDIDLT 190 (246)
T ss_pred HHHHHHhhHHHHHhhhhhhcccceeEEEEEeccc-cCcceEeecCcccc-ccceeeecccchhhHHHHHHHhhccCccch
Confidence 9999999854 5555 8999999999999998 68999999999998 58899999999999999999999987 67
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
.+|++++++.||..++..|..+ ..+||.+++++..+++.|..
T Consensus 191 ~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~p~f~~Ls~ 232 (246)
T KOG0182|consen 191 FEETVETAISALQSSLGIDFKS-SELEVGVVTVDNPEFRILSA 232 (246)
T ss_pred HHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCCcceeeccH
Confidence 9999999999999999988865 57999999999988887654
No 46
>KOG0863|consensus
Probab=100.00 E-value=2.3e-33 Score=217.20 Aligned_cols=186 Identities=19% Similarity=0.236 Sum_probs=168.8
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
...|++.||+|.++..||++-++..+.. +..++|||+|++|++++++|+++|++.|.++++.+|..+++.+++++++
T Consensus 29 vkqGsatVGLks~thaVLvAl~r~~seL---ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv 105 (264)
T KOG0863|consen 29 VKQGSATVGLKSRTHAVLVALKRAQSEL---SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV 105 (264)
T ss_pred HhcccceEeecccceEEEeeeccchhHH---HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence 4589999999999999999988876533 6788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC--CCC
Q psy15275 85 KVLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE--PNL 158 (205)
Q Consensus 85 ~~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~ 158 (205)
..+...|++.++.. | +|||||+++++|+|+. ||+||+++|+|++ .+++..++|+.++.+.++||++.. +++
T Consensus 106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~--G~hl~e~~Psg~v-~e~~g~sIGsRSQsARTyLEr~~e~f~~~ 182 (264)
T KOG0863|consen 106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDES--GPHLYEFCPSGNV-FECKGMSIGSRSQSARTYLERNLEEFEDS 182 (264)
T ss_pred HHHHHHHHHHHhhhhhhhCCccccceEEEEeecCC--CceeEEEcCCccE-EEEeeeecccchhhHHHHHHHHHHHHhcC
Confidence 99999998876643 3 7899999999999985 8999999999999 599999999999999999999874 689
Q ss_pred CHHHHHHHHHHHHHHHHhhc-cccCCcEEEEEEeCCcEE
Q psy15275 159 EPDDLFETIAQALVNACERN-AVSGWGAVVYIIEQDKVT 196 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~~~d-~~~~~~i~i~ii~~~g~~ 196 (205)
+.||.+..++.||+.....| ..++.+++|+|+.||...
T Consensus 183 ~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf 221 (264)
T KOG0863|consen 183 SPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPF 221 (264)
T ss_pred CHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCce
Confidence 99999999999999998744 778899999999998643
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.98 E-value=1.6e-30 Score=197.21 Aligned_cols=161 Identities=27% Similarity=0.331 Sum_probs=152.6
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+||++++|||+||+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998876678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC-cceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275 89 AMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWEPNLEPDDLFET 166 (205)
Q Consensus 89 ~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l 166 (205)
+.+++.++.++ ++|+++++|+||+|+ ++|+||.+||.|++ .+. .++++|.++..+.++|++.|+++++.+|++++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~--~~~~l~~id~~g~~-~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDE--GGGNLYYIDPSGPV-IENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcC--CCCEEEEECCCcCE-eecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999998876 589999999999997 48999999999998 577 99999999999999999999999999999999
Q ss_pred HHHHHH
Q psy15275 167 IAQALV 172 (205)
Q Consensus 167 ~~~~l~ 172 (205)
+.+||.
T Consensus 158 ~~~~l~ 163 (164)
T cd01901 158 ALKALK 163 (164)
T ss_pred HHHHHh
Confidence 999985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-17 Score=122.91 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=131.7
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecC-eEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGS-HMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++||+++++-++-|+||+|.++|.|+.++..+..|+.+|.. .++.|++|.++|+..|.+.++.+++.|.-+ -.-.+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~--L~raa 79 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD--LFRAA 79 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc--HHHHH
Confidence 479999999999999999999999999999999888877765 799999999999999999999999887511 11134
Q ss_pred HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCC-cceeecCchhhhhhhhhhcCC-CCCCHHH
Q psy15275 85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWE-PNLEPDD 162 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~-~~~~~~e 162 (205)
.++++-+..--| .|-+.+-++++ |+ -.+|-+...|-..++. +..++|||..++++..+..++ ++++
T Consensus 80 velaKdwr~Dk~---lr~LEAmllVa--d~----~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls--- 147 (178)
T COG5405 80 VELAKDWRTDKY---LRKLEAMLLVA--DK----THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS--- 147 (178)
T ss_pred HHHHHhhhhhhH---HHHHhhheeEe--CC----CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---
Confidence 445544443222 23366777887 65 3477777788765444 489999999999988777764 3666
Q ss_pred HHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275 163 LFETIAQALVNACERNAVSGWGAVVYIIE 191 (205)
Q Consensus 163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~ 191 (205)
|.+++.++|+.+.+-+..++.++.|..+.
T Consensus 148 A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 78899999988877777777777666554
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-12 Score=99.39 Aligned_cols=188 Identities=13% Similarity=0.038 Sum_probs=147.1
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEec---C-eEEEEeCCChhHHHHHHHHHHHHhhhhh-hhcCCcC
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVG---S-HMYVGLPGLATDTQTVYQKIRFRQNLYE-LKENRKM 82 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~---~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~ 82 (205)
+|-+||++-..|.|+++|+|...|.- ....++|+|... + -++++.+|..+-.|.+++.+.+..+.-. -.-.+-+
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence 46799999999999999999988753 236677876653 3 3677889999999999999987765111 1112334
Q ss_pred CHHHHHHHHHHHHH---hc-c------CCcceeeeEEEEecCCCCCcEEEEEcCCCcccc---CCcceeecCchhhhhhh
Q psy15275 83 SPKVLLAMISNMLY---ER-R------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQ---PSDFVVGGPCSDQLYGM 149 (205)
Q Consensus 83 ~~~~la~~i~~~~~---~~-r------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~---~~~~~a~G~g~~~~~~~ 149 (205)
++-+.+.++..... .+ + .--|.|++|+||.=.. +-|.||.|-|.|++.+ +.+|.-+|... +-+++
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G-~pp~Ly~IYpqGNFIqaT~etpf~QiGEtK-YGKPi 157 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKG-EPPRLYLIYPQGNFIQATPETPFLQIGETK-YGKPI 157 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecC-CCceeEEEccCCCeeecCCCCceeEccccc-cCchh
Confidence 66666666665432 22 1 2346799999999874 5699999999999843 46788899654 57899
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 150 CETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 150 Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
|++.+.-+++++|+.++++-++...++.+.+.|-++++.++++|-....
T Consensus 158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~ 206 (255)
T COG3484 158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVR 206 (255)
T ss_pred hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeee
Confidence 9999999999999999999999999999999999999999999976654
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.39 E-value=0.019 Score=44.57 Aligned_cols=50 Identities=10% Similarity=0.247 Sum_probs=44.1
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275 144 DQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD 193 (205)
Q Consensus 144 ~~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~ 193 (205)
+.+...|+++|++.|+++++..+..++|+.+....+..+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 46778899999999999999999999999998888877888999887764
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.72 E-value=0.05 Score=43.79 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=92.6
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
++.+|+..+++|.|+|.|+|. +.+-|.-.|...|-+.+ | .|.=.+-++|
T Consensus 1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEekL------Y---sGeIkteEEL 49 (293)
T COG4079 1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEKL------Y---SGEIKTEEEL 49 (293)
T ss_pred CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHHh------h---cCccccHHHH
Confidence 467899999999999999873 13456666666555443 2 3444566677
Q ss_pred HHHHHHHH-----Hhcc--CCcceeeeEEEEecCCC----CCcEEEEE-------cCCCccc----cCCcceeecCchh-
Q psy15275 88 LAMISNML-----YERR--FGPYFVEPMVVGLDPET----AEPIIGNM-------DLIGCVN----QPSDFVVGGPCSD- 144 (205)
Q Consensus 88 a~~i~~~~-----~~~r--~~P~~v~~iv~G~d~~~----~~p~ly~i-------d~~G~~~----~~~~~~a~G~g~~- 144 (205)
+++...+= ...| .+-..-++++|-+..-+ ..-.+|-+ +-.|+-. +......+-.|..
T Consensus 50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~ 129 (293)
T COG4079 50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF 129 (293)
T ss_pred HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence 77666531 1111 12222334444333210 11233322 1112110 0011222223333
Q ss_pred ---hhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275 145 ---QLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD 193 (205)
Q Consensus 145 ---~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~ 193 (205)
.+..+|..+|.+.++++++.++..++|..+...-+..+..++++.+++.
T Consensus 130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 4557889999999999999999999999998777777888999988764
No 52
>KOG3361|consensus
Probab=86.28 E-value=0.63 Score=34.08 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=38.0
Q ss_pred EEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFET 166 (205)
Q Consensus 123 ~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l 166 (205)
.+|.+|.+ +..+|-..|.||..+-+-+-..|-.++++|||.++
T Consensus 72 kvd~~g~I-~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVI-EDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EECCCCcE-EEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 57889998 68899999999999999999999999999999743
No 53
>PRK09732 hypothetical protein; Provisional
Probab=70.80 E-value=13 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEE
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRH 199 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~ 199 (205)
+.+|++.|.+++..++..+.+. +.++.|.|++..|...-.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~ 44 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLAL 44 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEE
Confidence 4699999999999999998875 568999999999966443
No 54
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=68.26 E-value=27 Score=25.99 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
++.+++++|.+++..++..+.+. +.++.+.+++.+|...-
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~a 44 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLVA 44 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEEE
Confidence 46799999999999999888764 68999999999985543
No 55
>COG1754 Uncharacterized C-terminal domain of topoisomerase IA [General function prediction only]
Probab=66.58 E-value=6.7 Score=32.60 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=49.4
Q ss_pred EEEecCCCCCcEEEEEcCCCccccCCcceeecCc-hhhhhhhhhhcCCC-CCCHHHHHHHHHHHHHHHHhhccccCCcEE
Q psy15275 109 VVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPC-SDQLYGMCETLWEP-NLEPDDLFETIAQALVNACERNAVSGWGAV 186 (205)
Q Consensus 109 v~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g-~~~~~~~Le~~~~~-~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~ 186 (205)
+.|.|+.+|.+-......+|-|.++ ..|.. -..-.+-|-+.|++ ++++|+|++|.. |-..+-.+..++..|.
T Consensus 77 ~LG~DP~tG~eI~~k~GryGPYVq~----~lg~~~~kpkraSLpkg~~~e~ItLE~AL~LLs--LPR~iG~hp~sge~I~ 150 (298)
T COG1754 77 VLGIDPETGEEIYLKNGRYGPYVQE----QLGDPKPKPKRASLPKGWKPETITLEKALKLLS--LPRVIGKHPDSGEEIS 150 (298)
T ss_pred ccccCCCCCceeEEeccCCCceeee----ecCCCCCCcccccCCCCCChhhCcHHHHHHHHc--CchhhCCCCCCCcEEE
Confidence 4489988777777777777776422 45665 55566778888874 799999987754 3333444555666665
Q ss_pred EE
Q psy15275 187 VY 188 (205)
Q Consensus 187 i~ 188 (205)
+.
T Consensus 151 ag 152 (298)
T COG1754 151 AG 152 (298)
T ss_pred ec
Confidence 44
No 56
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=63.81 E-value=11 Score=27.43 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
|.+|.++|.+++..+++.+.++ +.++.|.|++..|...-
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEE
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEE
Confidence 3578999999999999999876 34688999999885543
No 57
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=53.63 E-value=31 Score=27.17 Aligned_cols=41 Identities=5% Similarity=-0.048 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
||+...+..|......|......+++.||+-+|.-....|+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf 62 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPF 62 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEech
Confidence 57788888888888899999899999999999866665554
No 58
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=43.03 E-value=1.8e+02 Score=23.50 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=36.1
Q ss_pred eEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHH
Q psy15275 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65 (205)
Q Consensus 10 t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~ 65 (205)
..+-+..-+...||.-.... +.-.+|.|..-|+|+|-+.|...-.-.|.+
T Consensus 44 ~a~s~~~g~~~~lAys~~~~------~~l~pR~F~~~DdIfCiF~G~L~Nl~~L~q 93 (228)
T PF12481_consen 44 NAFSMNFGDSAALAYSHSNQ------SSLHPRLFAGVDDIFCIFLGSLENLCSLRQ 93 (228)
T ss_pred CeEEEEcCCCEEEEEecCCC------CccccccccccCCEEEEEecchhhHHHHHH
Confidence 45677777888888644322 134578899999999999998877666654
No 59
>KOG2599|consensus
Probab=41.82 E-value=2.1e+02 Score=24.00 Aligned_cols=94 Identities=11% Similarity=-0.070 Sum_probs=57.9
Q ss_pred hhcCCcCCHHHHHHHHHHHHHhcc-----------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchh
Q psy15275 76 LKENRKMSPKVLLAMISNMLYERR-----------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSD 144 (205)
Q Consensus 76 ~~~~~~~~~~~la~~i~~~~~~~r-----------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~ 144 (205)
...|.++..+.-++.-.+.+|+.. ..|.+..+.+.|.+.. ..++.|.| | .-+..-+|.|.-
T Consensus 157 iLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~-~~~f~~~i-p------ki~~~FtGTGDL 228 (308)
T KOG2599|consen 157 ILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCG-SERFRYLI-P------KIDGVFTGTGDL 228 (308)
T ss_pred hhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccC-CceEEEEe-c------ccceEEecccHH
Confidence 456777777777766666666542 2333445666677664 33444433 2 235556788886
Q ss_pred hhhhhhhhcCCC--CCCHHHHHHHHHHHHHHHHhh
Q psy15275 145 QLYGMCETLWEP--NLEPDDLFETIAQALVNACER 177 (205)
Q Consensus 145 ~~~~~Le~~~~~--~~~~~ea~~l~~~~l~~~~~~ 177 (205)
|.-=+|...++. +-++..|++.++.++...+.+
T Consensus 229 fsaLLla~~~~~~~~~~l~~a~e~~ls~~~~viqk 263 (308)
T KOG2599|consen 229 FSALLLAWLHESPDNDDLSKAVEQVLSSVQAVIQK 263 (308)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 654455544433 378888888888888877765
No 60
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=41.78 E-value=13 Score=21.94 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=21.5
Q ss_pred eecCchhhhhhhhhhcC-CCCCCHHHHHHHHHH
Q psy15275 138 VGGPCSDQLYGMCETLW-EPNLEPDDLFETIAQ 169 (205)
Q Consensus 138 a~G~g~~~~~~~Le~~~-~~~~~~~ea~~l~~~ 169 (205)
+.|.....+...+++.. .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 45777777777777665 788998888776654
No 61
>PRK02487 hypothetical protein; Provisional
Probab=37.27 E-value=1e+02 Score=23.32 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
.+.++.++|.+++..+.+.+.++ +.++.|.|+. .|.
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~ 55 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQ 55 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCc
Confidence 47899999999999999988764 4579999985 553
No 62
>COG3363 Archaeal IMP cyclohydrolase [Nucleotide transport and metabolism]
Probab=36.77 E-value=1.8e+02 Score=22.38 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=44.9
Q ss_pred CcceeecCchh--hhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHh-hc------cccCCcEEEEEEeCCcEEEEEeecc
Q psy15275 134 SDFVVGGPCSD--QLYGMCETLWEPNLEPDDLFETIAQALVNACE-RN------AVSGWGAVVYIIEQDKVTVRHVKTR 203 (205)
Q Consensus 134 ~~~~a~G~g~~--~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~-~d------~~~~~~i~i~ii~~~g~~~~~~~~~ 203 (205)
..+..++.|++ ++-.-|+. ++...||+-.++-+|.--.+ .+ ...++..-+.++..|++.++.+|+|
T Consensus 65 ~~~~VvsNGshtD~IadKl~~----G~ppRdAl~~vl~aMDYEkDeynTPRIa~ild~~t~~~G~Va~d~v~vr~v~~k 139 (200)
T COG3363 65 DETAVVSNGSHTDPIADKLES----GVPPRDALVSVLLAMDYEKDEYNTPRIAAILDGETAYLGIVAADEVYVRVVKPK 139 (200)
T ss_pred CCeEEEcCCcccchHHHHHhc----CCChHHHHHHHHHhhhccccccCCcceEEEEcCCeEEEEEEeccceEEEEeccC
Confidence 34556666664 44444544 78889999998888853221 11 2346678899999999999988775
No 63
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=35.10 E-value=69 Score=20.79 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=31.5
Q ss_pred ecCchhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHhhc
Q psy15275 139 GGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERN 178 (205)
Q Consensus 139 ~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~~d 178 (205)
-|+....+..+++..|.-+.+....-..+..+|+.+.+..
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G 59 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEKG 59 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCC
Confidence 3666778999999999767776667788888898888764
No 64
>KOG0083|consensus
Probab=34.17 E-value=51 Score=24.52 Aligned_cols=146 Identities=16% Similarity=0.019 Sum_probs=75.0
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeE----EEEeCCChhHHHHHHHHHHHH-----hhhhh
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHM----YVGLPGLATDTQTVYQKIRFR-----QNLYE 75 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i----~~~~sG~~~D~~~l~~~~~~~-----~~~~~ 75 (205)
+..|.|++=|++|||..++..-..+-|. +.-+|+..+++.- ++-.+|- .++....... +....
T Consensus 6 s~~gktcllir~kdgafl~~~fistvgi----d~rnkli~~~~~kvklqiwdtagq----erfrsvt~ayyrda~allll 77 (192)
T KOG0083|consen 6 SCTGKTCLLIRFKDGAFLAGNFISTVGI----DFRNKLIDMDDKKVKLQIWDTAGQ----ERFRSVTHAYYRDADALLLL 77 (192)
T ss_pred CccCceEEEEEeccCceecCceeeeeee----ccccceeccCCcEEEEEEeeccch----HHHhhhhHhhhcccceeeee
Confidence 5689999999999999998754433332 3345666665531 2233332 1121111111 11111
Q ss_pred hhcCCcCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchh----hhhhhhh
Q psy15275 76 LKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSD----QLYGMCE 151 (205)
Q Consensus 76 ~~~~~~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~----~~~~~Le 151 (205)
++.-..-+.+.+-.+++++. ++- .-.|.+.+.|-..+ -.|. ..+-.-.|.. +-.+++|
T Consensus 78 ydiankasfdn~~~wlsei~-ey~--k~~v~l~llgnk~d-~a~e--------------r~v~~ddg~kla~~y~ipfme 139 (192)
T KOG0083|consen 78 YDIANKASFDNCQAWLSEIH-EYA--KEAVALMLLGNKCD-LAHE--------------RAVKRDDGEKLAEAYGIPFME 139 (192)
T ss_pred eecccchhHHHHHHHHHHHH-HHH--HhhHhHhhhccccc-cchh--------------hccccchHHHHHHHHCCCcee
Confidence 22234457778888888753 221 12344444443222 1111 1111122222 2336778
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHh
Q psy15275 152 TLWEPNLEPDDLFETIAQALVNACE 176 (205)
Q Consensus 152 ~~~~~~~~~~ea~~l~~~~l~~~~~ 176 (205)
..-+.+++.+-|...+.+-|+....
T Consensus 140 tsaktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 140 TSAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred ccccccccHhHHHHHHHHHHHHhcc
Confidence 7778889988888766666655443
No 65
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=33.25 E-value=1.3e+02 Score=24.92 Aligned_cols=58 Identities=5% Similarity=0.069 Sum_probs=37.9
Q ss_pred cceeecCchhhhhhhhhhc----CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 135 DFVVGGPCSDQLYGMCETL----WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 135 ~~~a~G~g~~~~~~~Le~~----~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
-..++|.|..++...+-.. .+.+++++||.+.+++-+..... ..+...-+..++++|.
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~ 247 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGE 247 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCC
Confidence 3558899998777544422 23579999998877776644331 1234566777888874
No 66
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.08 E-value=61 Score=20.00 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=27.1
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHHHHHHHHhhccc
Q psy15275 145 QLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180 (205)
Q Consensus 145 ~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~~~d~~ 180 (205)
.+..-+.+...++||--||+.++...|+.-...+..
T Consensus 15 ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~~~ 50 (60)
T COG3140 15 KAVERIQELMAEGMSSGEAIALVAQELRENHKGENR 50 (60)
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHHhccccc
Confidence 344455555667999999999999999988766543
No 67
>PF13983 YsaB: YsaB-like lipoprotein
Probab=31.35 E-value=1.5e+02 Score=19.23 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=33.1
Q ss_pred hhcCCcCCHHHHHHHHHHHHHhcc--------CCcceeeeEEEEecCCCCCcEEEEEcCCCcc
Q psy15275 76 LKENRKMSPKVLLAMISNMLYERR--------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCV 130 (205)
Q Consensus 76 ~~~~~~~~~~~la~~i~~~~~~~r--------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~ 130 (205)
..-.+.+..+.+++.=+...|... +..|.-|.=+-|+-.- ...+++++||.|-+
T Consensus 10 vsp~~sL~ME~lCk~~AA~RYnt~~q~idv~~FeqfQgSYEm~G~T~r-~E~FvCSFD~dGqF 71 (77)
T PF13983_consen 10 VSPQRSLNMEQLCKDQAAHRYNTGAQKIDVTGFEQFQGSYEMRGYTAR-KEGFVCSFDADGQF 71 (77)
T ss_pred cCcccccCHHHHHHHHHHHhhcCCceeEeecchhhhccceEeeccccc-ccceEEeECCCCcE
Confidence 334456677777765555555421 2334455555566543 46899999999976
No 68
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=29.95 E-value=1.6e+02 Score=24.18 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=37.4
Q ss_pred cceeecCchhhhhhhhhhc----CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE
Q psy15275 135 DFVVGGPCSDQLYGMCETL----WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT 196 (205)
Q Consensus 135 ~~~a~G~g~~~~~~~Le~~----~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~ 196 (205)
-..++|.|..+++..+-.. .+.++++++|.+.+++-|... .+...-+..++++|..
T Consensus 175 a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 175 AASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 3568899998777654432 345789999988777666533 1234557778888753
No 69
>PF04485 NblA: Phycobilisome degradation protein nblA ; InterPro: IPR007574 In the cyanobacterium Synechococcus species PCC 7942 (P35087 from SWISSPROT), nblA triggers degradation of light-harvesting phycobiliproteins in response to deprivation nutrients including nitrogen, phosphorus and sulphur. The mechanism of nblA function is not known, but it has been hypothesised that nblA may act by disrupting phycobilisome structure, activating a protease or tagging phycobiliproteins for proteolysis. Members of this family have also been identified in the chloroplasts of some red algae.; PDB: 3CS5_D 1OJH_L 2QDO_B 2Q8V_A.
Probab=29.67 E-value=89 Score=19.15 Aligned_cols=23 Identities=9% Similarity=0.110 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy15275 156 PNLEPDDLFETIAQALVNACERN 178 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d 178 (205)
.+||.++|.++.++.++..+-+|
T Consensus 20 ~~ls~Eqaq~~Lve~~rqmmike 42 (53)
T PF04485_consen 20 QKLSREQAQELLVELYRQMMIKE 42 (53)
T ss_dssp CTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999877554
No 70
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=29.16 E-value=75 Score=16.84 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=16.2
Q ss_pred eeEEEEecCCCCCcEEEEEcCCCc
Q psy15275 106 EPMVVGLDPETAEPIIGNMDLIGC 129 (205)
Q Consensus 106 ~~iv~G~d~~~~~p~ly~id~~G~ 129 (205)
+..+-|.-+ +.|+||.|-.+|.
T Consensus 5 ~~~v~G~rP--g~pfl~~IpatG~ 26 (29)
T PF10632_consen 5 SPRVFGARP--GSPFLFTIPATGE 26 (29)
T ss_pred cCcEEcccC--CCcEEEEeeccCc
Confidence 344567777 5799999988874
No 71
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=28.85 E-value=1.7e+02 Score=24.24 Aligned_cols=55 Identities=5% Similarity=0.007 Sum_probs=35.8
Q ss_pred cceeecCchhhhhhhhhhc----CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 135 DFVVGGPCSDQLYGMCETL----WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 135 ~~~a~G~g~~~~~~~Le~~----~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
-..++|.|..++...+-.. .+.+++++||.+.+++-+.... +...-+..++++|.
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~ 236 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGE 236 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCC
Confidence 3568899998777654432 3457899999887776664332 23345666777763
No 72
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=26.89 E-value=1.1e+02 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=16.9
Q ss_pred HHHHHhhhhhhhcCCcCCHHHHHHHHH
Q psy15275 66 KIRFRQNLYELKENRKMSPKVLLAMIS 92 (205)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~la~~i~ 92 (205)
.++..........|+.++.+.+|..+.
T Consensus 5 ~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 5 KIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 333334445567799999999998765
No 73
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=24.75 E-value=46 Score=23.36 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=12.0
Q ss_pred CCcEEEEEcCCCcc
Q psy15275 117 AEPIIGNMDLIGCV 130 (205)
Q Consensus 117 ~~p~ly~id~~G~~ 130 (205)
.+|+||++||.+..
T Consensus 36 d~PrL~Yvdp~~~~ 49 (104)
T PF14593_consen 36 DGPRLFYVDPKKMV 49 (104)
T ss_dssp TTTEEEEEETTTTE
T ss_pred cCCEEEEEECCCCe
Confidence 37999999999875
No 74
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=24.73 E-value=1.8e+02 Score=20.68 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHHHHHHHH
Q psy15275 56 LATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNM 94 (205)
Q Consensus 56 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~ 94 (205)
++.|--.+++++|. |-..++..++++.+++.+...
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~ 73 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANK 73 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHH
Confidence 55666778888885 334568889999999887653
No 75
>PF15606 Toxin_55: Putative toxin 55
Probab=24.70 E-value=2e+02 Score=18.90 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.4
Q ss_pred eEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCC
Q psy15275 48 HMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMS 83 (205)
Q Consensus 48 ~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 83 (205)
-+.|+.-|..+|.. +.+.+...++++....|..++
T Consensus 6 ~~mMAa~GNqaDTg-I~~~v~~~~~~~~~~~GK~~d 40 (77)
T PF15606_consen 6 PVMMAAPGNQADTG-IVQQVYEIISDAFQSGGKAPD 40 (77)
T ss_pred hhhhccCCCchhHH-HHHHHHHHHHHHHhhcCCCCc
Confidence 35789999999998 445556666777777777654
No 76
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=24.03 E-value=1.6e+02 Score=20.88 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHHHhhhhh--hhc-------CC-cCCHHHHHHHHHHHHHh
Q psy15275 54 PGLATDTQTVYQKIRFRQNLYE--LKE-------NR-KMSPKVLLAMISNMLYE 97 (205)
Q Consensus 54 sG~~~D~~~l~~~~~~~~~~~~--~~~-------~~-~~~~~~la~~i~~~~~~ 97 (205)
.|..-|+..+.+.++.....+. +.+ .. .+|++.+|.+|...+..
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~ 96 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKE 96 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHH
Confidence 5777888888888876443222 111 01 27899999999887644
No 77
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.22 E-value=57 Score=22.29 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=10.7
Q ss_pred CCcEEEEEcCCCc
Q psy15275 117 AEPIIGNMDLIGC 129 (205)
Q Consensus 117 ~~p~ly~id~~G~ 129 (205)
.+|+|+++||.-.
T Consensus 24 d~PrL~yvdp~~~ 36 (89)
T cd01262 24 NGPRLIYVDPVKK 36 (89)
T ss_pred cCceEEEEcCCcC
Confidence 3799999999743
No 78
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=23.13 E-value=1.8e+02 Score=19.35 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEE
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRH 199 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~ 199 (205)
-.+|.+||.+.+++.|..... ++.=.+++++.+|.....
T Consensus 33 g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g~~l~h 71 (95)
T PF08269_consen 33 GKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDGVVLAH 71 (95)
T ss_dssp T-----TTHHHHHHHHHH--S-----BTTB--EEE-TTSBEEEE
T ss_pred CCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCCeEEEc
Confidence 459999999999999976643 234578888999977554
No 79
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=21.98 E-value=2e+02 Score=18.57 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
+|+.+||+..+.+.|..+..+.. -.+.+|+-.|
T Consensus 5 G~~~~eA~~~l~~~l~~~~~~~~-----~~~~II~G~G 37 (83)
T PF01713_consen 5 GLTVEEALRALEEFLDEARQRGI-----RELRIITGKG 37 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHHHTTH-----SEEEEE--ST
T ss_pred CCcHHHHHHHHHHHHHHHHHcCC-----CEEEEEeccC
Confidence 58899999999999988875533 4455666544
No 80
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.94 E-value=2.1e+02 Score=19.32 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=24.7
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHHHHHHHH
Q psy15275 145 QLYGMCETLWEPNLEPDDLFETIAQALVNAC 175 (205)
Q Consensus 145 ~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~ 175 (205)
.+..+|++.-.|++|+++.+++=.+++....
T Consensus 33 rakeiLe~LndpeisL~eSvkLYkeG~~lL~ 63 (86)
T PRK14065 33 SLEQAIDRLNDPNLSLKDGMDLYKTAMQELF 63 (86)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4667888888899999999988777776544
No 81
>KOG0092|consensus
Probab=20.73 E-value=81 Score=24.90 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=49.3
Q ss_pred EeCCEEEEeEecccccCceeeeccccce-EEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhc---------CCcCCH
Q psy15275 15 TGKNCVAIACDKRFGIQGTALADNFQKI-FQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKE---------NRKMSP 84 (205)
Q Consensus 15 ~~~dgVvla~d~~~~~g~~~~~~~~~Ki-~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~---------~~~~~~ 84 (205)
++.+.++|.-|-...........+.+.+ .+..++++++..|.-+|...-.+.-..+++.|.-.. ....++
T Consensus 76 RgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 76 RGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENV 155 (200)
T ss_pred cCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCH
Confidence 4556666666643221111112222222 345578999999999998874444444555554332 234678
Q ss_pred HHHHHHHHHHHHhcc
Q psy15275 85 KVLLAMISNMLYERR 99 (205)
Q Consensus 85 ~~la~~i~~~~~~~r 99 (205)
+.+-.-|.+.+...+
T Consensus 156 ~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHHHhccCcc
Confidence 888888888776543
No 82
>smart00463 SMR Small MutS-related domain.
Probab=20.63 E-value=2.5e+02 Score=18.02 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
+|+.+||+..+...|..+..... .-.+.||+-.|.
T Consensus 8 G~~~~eA~~~l~~~l~~~~~~~~----~~~~~II~G~G~ 42 (80)
T smart00463 8 GLTVEEALTALDKFLNNARLKGL----EQKLVIITGKGK 42 (80)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCC----CceEEEEEcccC
Confidence 68999999999999988876421 135677776553
No 83
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=20.12 E-value=3.5e+02 Score=19.53 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhhhcCCcCCHHH
Q psy15275 65 QKIRFRQNLYELKENRKMSPKV 86 (205)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
+.++..++.|+.+++..++..+
T Consensus 43 ~~i~~al~~y~~d~g~yP~~~~ 64 (134)
T TIGR01710 43 KALKNALDMYRLDNGRYPTEEQ 64 (134)
T ss_pred HHHHHHHHHHHHHhCCCCCcHH
Confidence 3444455677778887765433
Done!