Query psy15275
Match_columns 205
No_of_seqs 121 out of 1097
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 16:56:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_J 20S proteasome; cell cy 100.0 2.1E-53 7.3E-58 336.5 26.1 204 1-205 1-205 (205)
2 1iru_M 20S proteasome; cell cy 100.0 4.5E-53 1.5E-57 336.5 25.9 203 1-205 2-213 (213)
3 1ryp_M 20S proteasome; multica 100.0 6.4E-53 2.2E-57 337.7 25.2 203 1-205 2-222 (222)
4 1ryp_J 20S proteasome; multica 100.0 5.5E-52 1.9E-56 328.2 26.4 203 2-205 2-204 (204)
5 1yar_H Proteasome beta subunit 100.0 1.5E-50 5.2E-55 322.8 23.2 192 1-196 1-193 (217)
6 3h4p_a Proteasome subunit beta 100.0 3.7E-49 1.3E-53 315.2 22.7 188 8-197 1-189 (219)
7 1iru_N 20S proteasome; cell cy 100.0 9.9E-49 3.4E-53 312.7 21.3 198 5-205 5-210 (219)
8 1j2q_H Proteasome beta subunit 100.0 2.6E-48 8.9E-53 306.7 23.3 186 9-197 1-187 (202)
9 1iru_H 20S proteasome; cell cy 100.0 5.3E-48 1.8E-52 305.6 24.6 191 9-202 1-191 (205)
10 1ryp_N 20S proteasome; multica 100.0 3.1E-48 1.1E-52 312.5 22.7 192 5-198 5-209 (233)
11 1ryp_H 20S proteasome; multica 100.0 5.8E-48 2E-52 305.4 23.3 193 5-201 6-198 (205)
12 3unf_H Proteasome subunit beta 100.0 8.9E-48 3E-52 309.7 24.6 193 9-205 1-196 (234)
13 1ryp_K 20S proteasome; multica 100.0 7.1E-48 2.4E-52 303.3 23.3 189 8-198 1-192 (198)
14 1iru_L 20S proteasome; cell cy 100.0 3.1E-47 1.1E-51 300.9 24.2 186 9-197 1-186 (204)
15 1g0u_M Proteasome component PR 100.0 1.6E-47 5.4E-52 313.9 22.9 200 3-205 37-253 (266)
16 1ryp_L 20S proteasome; multica 100.0 3.5E-47 1.2E-51 302.3 23.8 187 9-197 1-187 (212)
17 3nzj_K Proteasome component PR 100.0 2.8E-47 9.5E-52 314.7 24.0 192 5-198 72-263 (287)
18 1ryp_I 20S proteasome; multica 100.0 5.2E-47 1.8E-51 303.3 24.7 193 9-205 1-197 (222)
19 3nzj_H Proteasome component PU 100.0 4.8E-47 1.6E-51 309.7 24.9 196 5-204 26-225 (261)
20 1iru_K 20S proteasome; cell cy 100.0 3E-47 1E-51 300.4 22.3 190 8-199 1-192 (201)
21 3unf_N Proteasome subunit beta 100.0 8.7E-47 3E-51 297.3 23.8 190 9-202 1-190 (199)
22 1ryp_A 20S proteasome; multica 100.0 1.7E-47 5.9E-52 310.0 20.3 185 6-194 27-223 (243)
23 1iru_A 20S proteasome; cell cy 100.0 1E-46 3.4E-51 306.0 22.3 192 7-202 35-232 (246)
24 1iru_I 20S proteasome; cell cy 100.0 2.2E-46 7.5E-51 301.9 23.6 193 9-205 1-196 (234)
25 1ryp_C 20S proteasome; multica 100.0 1.3E-46 4.5E-51 305.0 20.7 195 5-201 28-230 (244)
26 1yar_A Proteasome alpha subuni 100.0 2.2E-46 7.6E-51 301.7 21.1 190 5-200 31-224 (233)
27 1iru_C 20S proteasome; cell cy 100.0 2E-46 6.8E-51 306.7 20.8 194 5-200 28-228 (261)
28 1iru_B 20S proteasome; cell cy 100.0 3.5E-46 1.2E-50 300.6 20.3 187 5-196 28-218 (233)
29 1ryp_E 20S proteasome; multica 100.0 3.8E-46 1.3E-50 301.9 20.4 192 5-201 23-224 (242)
30 1ryp_D 20S proteasome; multica 100.0 1.9E-45 6.5E-50 297.7 23.3 192 5-201 25-223 (241)
31 1iru_E 20S proteasome; cell cy 100.0 8.9E-46 3E-50 299.6 19.6 191 5-201 31-230 (241)
32 1q5q_H Proteasome beta-type su 100.0 5.2E-45 1.8E-49 294.1 23.3 187 9-197 1-204 (235)
33 3h4p_A Proteasome subunit alph 100.0 8.6E-46 3E-50 303.0 19.0 191 6-202 36-230 (264)
34 1iru_G 20S proteasome; cell cy 100.0 9E-46 3.1E-50 301.7 18.6 186 5-193 30-219 (254)
35 1q5r_H Proteasome beta-type su 100.0 6.4E-45 2.2E-49 301.5 22.8 191 5-197 62-269 (294)
36 1ryp_G 20S proteasome; multica 100.0 5.8E-45 2E-49 295.3 21.5 190 5-198 27-226 (244)
37 3nzj_F Proteasome component C1 100.0 2.7E-45 9.3E-50 302.9 20.0 194 5-202 31-233 (288)
38 1iru_D 20S proteasome; cell cy 100.0 3.9E-45 1.3E-49 297.0 18.9 184 5-194 26-215 (248)
39 1j2p_A Alpha-ring, proteasome 100.0 3.3E-44 1.1E-48 291.2 21.9 183 5-193 31-218 (246)
40 2jay_A Proteasome; hydrolase; 100.0 1.3E-44 4.4E-49 299.4 19.7 192 5-197 54-261 (291)
41 1ryp_F 20S proteasome; multica 100.0 1.2E-44 4E-49 291.7 18.7 183 6-195 29-220 (233)
42 1iru_F 20S proteasome; cell cy 100.0 1.3E-44 4.6E-49 296.1 18.9 183 6-194 30-219 (263)
43 3mi0_A Proteasome subunit alph 100.0 5.3E-44 1.8E-48 289.7 22.1 185 6-200 25-225 (248)
44 1ryp_B 20S proteasome; multica 100.0 9.3E-44 3.2E-48 289.2 21.3 186 5-194 28-218 (250)
45 1q5q_A Proteasome alpha-type s 100.0 6.7E-43 2.3E-47 285.3 20.1 179 6-194 25-215 (259)
46 2z3b_A ATP-dependent protease 100.0 1.1E-38 3.7E-43 247.4 18.7 170 5-190 2-179 (180)
47 1m4y_A ATP-dependent protease 100.0 1.2E-37 4.1E-42 239.6 18.0 166 9-190 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 1.8E-37 6.3E-42 239.2 19.0 167 9-191 1-173 (174)
49 3fpw_A HBPS, extracellular HAE 51.9 29 0.00099 26.2 5.5 40 155-198 62-101 (192)
50 2a2l_A Unknown; structural gen 49.1 19 0.00065 25.7 3.9 38 156-197 10-47 (145)
51 3fau_A NEDD4-binding protein 2 40.6 43 0.0015 21.0 4.3 39 157-195 7-45 (82)
52 2d9i_A NEDD4-binding protein 2 37.1 30 0.001 22.6 3.2 39 157-195 15-53 (96)
53 1ojh_A NBLA; degradation prote 30.5 52 0.0018 20.2 3.1 23 156-178 23-45 (65)
54 2q8v_A NBLA protein; phycobili 30.1 54 0.0018 20.0 3.1 23 156-178 28-50 (63)
55 1apy_B Aspartylglucosaminidase 28.1 1E+02 0.0035 21.9 4.9 55 135-194 48-106 (141)
56 4eo3_A Bacterioferritin comigr 26.1 13 0.00045 30.2 -0.2 35 119-153 103-137 (322)
57 3jtz_A Integrase; four strande 24.1 53 0.0018 21.1 2.6 49 122-175 28-76 (88)
58 1yx3_A Hypothetical protein DS 23.4 1.3E+02 0.0044 21.1 4.6 36 56-95 62-97 (132)
59 2kep_A General secretion pathw 22.6 1.7E+02 0.0057 19.7 5.0 23 64-86 16-38 (110)
60 2vkc_A NEDD4-binding protein 2 22.5 1.3E+02 0.0043 20.9 4.5 39 157-195 60-98 (135)
61 1p4k_A N(4)-(beta-N-acetylgluc 22.0 1.8E+02 0.0062 23.3 5.8 61 135-195 199-265 (295)
62 1b66_A 6-pyruvoyl tetrahydropt 21.4 1E+02 0.0035 21.6 3.9 45 53-97 61-115 (140)
No 1
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.1e-53 Score=336.51 Aligned_cols=204 Identities=60% Similarity=1.128 Sum_probs=194.7
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR 80 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
||||+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecC-CCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCC
Q psy15275 81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDP-ETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLE 159 (205)
Q Consensus 81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~-~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 159 (205)
+++++.+++++++++|++|..||++++|+||||+ + ++|+||.+||+|++.+..+|.++|+|+++++++||+.|+++|+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~-~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 159 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKT-FKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMD 159 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTS-CCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCC-CCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCC
Confidence 9999999999999999988779999999999996 4 5899999999999743456799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
++||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus 160 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 160 PDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205 (205)
T ss_dssp HHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence 9999999999999999999999999999999999999999999987
No 2
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.5e-53 Score=336.47 Aligned_cols=203 Identities=26% Similarity=0.448 Sum_probs=196.3
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR 80 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
+|||.++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc-------
Q psy15275 81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL------- 153 (205)
Q Consensus 81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~------- 153 (205)
+++++.+++++++++|++|.|||++++|+||||++ ++|+||.+||+|++ +++++.|+|+|+++++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~-g~p~Ly~id~~G~~-~~~~~~aiGsg~~~a~~~Le~~~~~~~~~ 159 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE-GKGAVYSFDPVGSY-QRDSFKAGGSASAMLQPLLDNQVGFKNMQ 159 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTT-SCEEEEEECTTSCE-EEESEEEEETTHHHHHHHHHHHTTCCSCS
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCC-CCEEEEEECCCCCE-EECCEEEEeeCHHHHHHHHhhcccccccc
Confidence 99999999999999999888999999999999976 57999999999998 6899999999999999999999
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 154 --WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 154 --~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
|+++|+++||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus 160 ~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 160 NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 213 (213)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence 8899999999999999999999999999999999999999999999999987
No 3
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.4e-53 Score=337.66 Aligned_cols=203 Identities=21% Similarity=0.389 Sum_probs=196.6
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN- 79 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~- 79 (205)
+|||.++|+|+|||+++||||||+|+|.+.|.++..++.+|||+|+++++|+++|..+|++.|.++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc------
Q psy15275 80 RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL------ 153 (205)
Q Consensus 80 ~~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~------ 153 (205)
++++++.+|+++++++|.+|++||++++|+||||++ ++|+||.+||+|++ +++++.|+|+|+++++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~-g~p~Ly~~dp~G~~-~~~~~~a~Gsg~~~a~~~Le~~~~~~~~ 159 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDED-GKGAVYSFDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTT-SCEEEEEECTTSCE-EEESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCC-CCeEEEEECCCcCE-EecCEEEEcCcHHHHHHHHhcccccccc
Confidence 999999999999999999888999999999999976 67999999999998 6899999999999999999998
Q ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 154 -----------WEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 154 -----------~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
|+++|+++||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus 160 ~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp BCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred cccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 8899999999999999999999999999999999999999999999999987
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=5.5e-52 Score=328.20 Aligned_cols=203 Identities=55% Similarity=1.046 Sum_probs=193.3
Q ss_pred CcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCc
Q psy15275 2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRK 81 (205)
Q Consensus 2 ~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 81 (205)
|||+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+ +++|+++|..+|++.+.++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 799999999999999999999999999999988888999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275 82 MSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD 161 (205)
Q Consensus 82 ~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 161 (205)
++++.+++++++++|.+|..||++++|+||||+.+++|+||.+||+|++.+..+|.++|+|+++++++||+.|+++|+++
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence 99999999999999998877999999999999722589999999999974445679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeeccCC
Q psy15275 162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205 (205)
Q Consensus 162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~~ 205 (205)
||++++++||..+.++|..++++++|++|+++|++++.+|+|+|
T Consensus 161 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 161 DLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp HHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence 99999999999999999999999999999999999999999987
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.5e-50 Score=322.83 Aligned_cols=192 Identities=24% Similarity=0.394 Sum_probs=178.2
Q ss_pred CCcccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCC
Q psy15275 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENR 80 (205)
Q Consensus 1 ~~~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205)
|+|+..+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 81 KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 81 ~~~~~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+++++.+++++++++|.+|.|||++++|+|||| + ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ 156 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T--APHVFSIDAAGGS-VEDIYASTGSGSPFVYGVLESQYSEKMTV 156 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S--SEEEEEECTTCCE-EEESEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C--CCEEEEECCCCCe-EecCEEEEcCCHHHHHHHHHhhcccCCCH
Confidence 999999999999999998889999999999999 5 7999999999999 58899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeC-CcEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQ-DKVT 196 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~-~g~~ 196 (205)
+||++++++||..+.++|..+++++++++|++ +|++
T Consensus 157 eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~ 193 (217)
T 1yar_H 157 DEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYV 193 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEE
Confidence 99999999999999999999999999999999 7754
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.7e-49 Score=315.21 Aligned_cols=188 Identities=21% Similarity=0.380 Sum_probs=180.4
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
|+|+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCHHHHHHH
Q psy15275 88 LAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEPDDLFET 166 (205)
Q Consensus 88 a~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l 166 (205)
++++++++|.+|.+||+|++|+||||++ ++|+||.+||+|++ .+++ +.|+|+|+++++++||+.|+++|+++||+++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~l 158 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLL-EGAKLFSLDPLGGM-NEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKL 158 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETT-TEEEEEEECSSCCE-EECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCC-CCcEEEEECCCCce-EecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999998888999999999999985 58999999999999 5788 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 167 ~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+++||..+.++|..++++++|++|+++|++.
T Consensus 159 a~~al~~~~~rd~~sg~~i~v~vi~~~g~~~ 189 (219)
T 3h4p_a 159 ALNALKSAMERDTFSGNGISLAVITKDGVKI 189 (219)
T ss_dssp HHHHHHHHHTSCSSCCSCCCEEEEETTEEEE
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEEeCCCeEE
Confidence 9999999999999999999999999998654
No 7
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=9.9e-49 Score=312.69 Aligned_cols=198 Identities=19% Similarity=0.224 Sum_probs=186.4
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-hcCCcCC
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-KENRKMS 83 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~ 83 (205)
..+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++ +++++++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 357999999999999999999999999999899999999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCC
Q psy15275 84 PKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLE 159 (205)
Q Consensus 84 ~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~ 159 (205)
++.+++++++++|.+| +|||++++|+||||+ ++|+||.+||+|++ .++++.++|+|+++++++||+.|++ +|+
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt 161 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVA-YEAPSLATGYGAYLAQPLLREVLEKQPVLS 161 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCE-EECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCe-EECCeEEECccHHHHHHHHHhhcCCCCCCC
Confidence 9999999999999877 899999999999997 38999999999999 6899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD 205 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~ 205 (205)
++||++++++||..+.++|..++++++|++|+++|+++. +++..|+
T Consensus 162 ~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~~~ 210 (219)
T 1iru_N 162 QTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETNWD 210 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCCCG
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccchhh
Confidence 999999999999999999999999999999999997655 3555663
No 8
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.6e-48 Score=306.68 Aligned_cols=186 Identities=28% Similarity=0.423 Sum_probs=178.9
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc-ceeecCchhhhhhhhhhcCCCCCCHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD-FVVGGPCSDQLYGMCETLWEPNLEPDDLFETI 167 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~ 167 (205)
+++++++|.+|.|||++++|+||||++ ||+||.+||+|++ .+++ +.|+|+|+++++++||+.|+++|+++||++++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~--gp~Ly~id~~G~~-~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la 157 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSE--GKSIYSIDPIGGA-IEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA 157 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETT--EEEEEEECTTCCE-EEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCC--CCEEEEECCCCCe-eecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHH
Confidence 999999999888999999999999974 7999999999999 5888 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 168 AQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 168 ~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
.+||..+.++|..+++++++++|+++|++.
T Consensus 158 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 187 (202)
T 1j2q_H 158 VRAIYSAMKRDSASGDGIDVVKITEDEFYQ 187 (202)
T ss_dssp HHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred HHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence 999999999999999999999999998543
No 9
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.3e-48 Score=305.57 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=182.8
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+|. ||++++|+||||++ ++|+||.+||+|++ .+++++++|+|+++++++||+.|+++|+++||++++.
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~-~gp~ly~~d~~G~~-~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~ 157 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQ-EGGQVYSVPMGGMM-VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTA 157 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETT-TEEEEEEECTTSCC-EECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCC-CCCEEEEECCCCcE-EecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999998765 99999999999985 58999999999999 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
+||..+.++|..+++++++++|+++|.+++.++.
T Consensus 158 ~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~ 191 (205)
T 1iru_H 158 NALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191 (205)
T ss_dssp HHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECG
T ss_pred HHHHHHHHhccccCCcEEEEEEeCCCeEEEEeCh
Confidence 9999999999999999999999999998887765
No 10
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.1e-48 Score=312.52 Aligned_cols=192 Identities=18% Similarity=0.285 Sum_probs=183.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-----hcC
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-----KEN 79 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~ 79 (205)
..+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.|.++++.+++.|++ +++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 84 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 357999999999999999999999999999899999999999999999999999999999999999999998 899
Q ss_pred CcCCHHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC-
Q psy15275 80 RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP- 156 (205)
Q Consensus 80 ~~~~~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~- 156 (205)
++++++.+++++++++|.+| ++||+|++|+||||++ ++|+||.+||+|++ .++++.++|+|+++++++||+.|++
T Consensus 85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ 162 (233)
T 1ryp_N 85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQFLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRE 162 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT-SCEEEEEEETTCCE-ECCSEEECTHHHHHHHHHHTTTCSSG
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCC-CCEEEEEECCCcCe-EEcCEEEECcCHHHHHHHHHHhhccc
Confidence 99999999999999999876 7899999999999985 58999999999998 6899999999999999999999999
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEEEE
Q psy15275 157 ----NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVTVR 198 (205)
Q Consensus 157 ----~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~~~ 198 (205)
+|+++||++++++||..+.++|..++++++|++|+++ |+++.
T Consensus 163 ~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~ 209 (233)
T 1ryp_N 163 SDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK 209 (233)
T ss_dssp GGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence 9999999999999999999999999999999999999 87664
No 11
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=5.8e-48 Score=305.36 Aligned_cols=193 Identities=20% Similarity=0.286 Sum_probs=183.8
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++ +++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v 84 (205)
T 1ryp_H 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PST 84 (205)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCH
T ss_pred CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCH
Confidence 4689999999999999999999999998888899999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
+.+++++++++|.+|.+ |++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus 85 ~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~-~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 161 (205)
T 1ryp_H 85 ETAASVFKELCYENKDN-LTAGIIVAGYDDK-NKGEVYTIPLGGSV-HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETV 161 (205)
T ss_dssp HHHHHHHHHHHHHTTTT-CCEEEEEEEEETT-TEEEEEEECTTSCC-EEESEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhhhcC-ceEEEEEEEEecC-CCcEEEEECCCccE-EecCEEEEEecHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999988755 9999999999985 58999999999998 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK 201 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~ 201 (205)
+++++||..+.++|..++++++|++|+++|++.+.+.
T Consensus 162 ~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~~ 198 (205)
T 1ryp_H 162 DFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY 198 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEec
Confidence 9999999999999999999999999999999887653
No 12
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=8.9e-48 Score=309.75 Aligned_cols=193 Identities=17% Similarity=0.205 Sum_probs=183.0
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 69999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+ .+||++++|+||||++ ||+||++||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus 81 ~~l~~~l~~~-~~p~~v~llvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~ 156 (234)
T 3unf_H 81 RILRQTLFRY-QGHVGASLVVGGVDLN--GPQLYEVHPHGSY-SRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLV 156 (234)
T ss_dssp HHHHHHHHHT-TTCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCccEEEEEEEEeCC--CCEEEEECCCCCE-EeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHH
Confidence 9999998875 3699999999999984 8999999999999 5999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD 205 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~ 205 (205)
+||..+.++|..++++++|++|+++|++.. .+|.+|+
T Consensus 157 ~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~ 196 (234)
T 3unf_H 157 EAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPV 196 (234)
T ss_dssp HHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCC
T ss_pred HHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccc
Confidence 999999999999999999999999998765 4666774
No 13
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=7.1e-48 Score=303.25 Aligned_cols=189 Identities=19% Similarity=0.297 Sum_probs=179.7
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
++|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-C-CcceeeeEEEEecC-CCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 88 LAMISNMLYERR-F-GPYFVEPMVVGLDP-ETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 88 a~~i~~~~~~~r-~-~P~~v~~iv~G~d~-~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
++++++++|.++ . +||++++|+||||+ + ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~-~~p~Ly~idp~G~~-~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKK-NKPELYQIDYLGTK-VELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTT-TEEEEEEECTTCCE-EECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCC-CCcEEEEECCCCCE-EECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 999999998863 3 59999999999997 4 58999999999998 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+++++||..+.++|..++++++|++|+++|++..
T Consensus 159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~ 192 (198)
T 1ryp_K 159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV 192 (198)
T ss_dssp HHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEe
Confidence 9999999999999999999999999999997754
No 14
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=3.1e-47 Score=300.91 Aligned_cols=186 Identities=19% Similarity=0.254 Sum_probs=179.0
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+|.+||+|++|+||||++ ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~ 157 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEGNR-ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLAR 157 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSS--SEEEEEEESSSCE-EECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCC--CCEEEEECCCCcE-EEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 999999999887899999999999974 8999999999999 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+||..+.++|..++++++|++|+++|++.
T Consensus 158 ~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 186 (204)
T 1iru_L 158 RAIYQATYRDAYSGGAVNLYHVREDGWIR 186 (204)
T ss_dssp HHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred HHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence 99999999999899999999999999654
No 15
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=1.6e-47 Score=313.90 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=186.9
Q ss_pred cccccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhh-----h
Q psy15275 3 IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYEL-----K 77 (205)
Q Consensus 3 ~~~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 77 (205)
|.. +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++++|+++|..+|++.|.++++.+++.|++ +
T Consensus 37 av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~ 115 (266)
T 1g0u_M 37 PIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 115 (266)
T ss_dssp CCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred Ccc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 444 7999999999999999999999999988899999999999999999999999999999999999999998 8
Q ss_pred cCCcCCHHHHHHHHHHHHHhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275 78 ENRKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE 155 (205)
Q Consensus 78 ~~~~~~~~~la~~i~~~~~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 155 (205)
++++++++.+++++++++|.+| ++||+|++||||||++ ++|+||.+||+|++ .++++.++|+|+++++++||+.|+
T Consensus 116 ~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~ 193 (266)
T 1g0u_M 116 AEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQFLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVD 193 (266)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTT-SCEEEEEEETTCCE-ECCSEEECTHHHHTHHHHHTTTCS
T ss_pred cCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCC-CCEEEEEECCCCCE-EeCCEEEEccCHHHHHHHHHHhhc
Confidence 9999999999999999999876 7899999999999985 58999999999998 689999999999999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC-cEEEE---Eeecc-CC
Q psy15275 156 P-----NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQD-KVTVR---HVKTR-MD 205 (205)
Q Consensus 156 ~-----~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~-g~~~~---~~~~~-~~ 205 (205)
+ +|+++||++++++||..+.++|..++++++|++|+++ |+++. +++.. |+
T Consensus 194 ~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~ 253 (266)
T 1g0u_M 194 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWD 253 (266)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhh
Confidence 9 9999999999999999999999999999999999999 87664 34444 53
No 16
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3.5e-47 Score=302.34 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=179.6
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+|..||++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~ 158 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRK-EGPTIYYVDSDGTR-LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGK 158 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETT-TEEEEEEEETTCCE-EECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCC-CCCEEEEEcCCcee-EecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 999999998887799999999999965 58999999999999 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+||..+.++|..+++++++++|+++|++.
T Consensus 159 ~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 187 (212)
T 1ryp_L 159 RSILAAAHRDAYSGGSVNLYHVTEDGWIY 187 (212)
T ss_dssp HHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred HHHHHHHHhccccCCceEEEEEcCCceEE
Confidence 99999999999999999999999998654
No 17
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.8e-47 Score=314.69 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=181.7
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
-.+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv 151 (287)
T 3nzj_K 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISV 151 (287)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
+.+++++++++|.+|.+||++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus 152 ~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~-~gp~Ly~iDp~G~~-~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi 229 (287)
T 3nzj_K 152 AAASKILSNLVYQYKGAGLSMGTMICGYTRK-EGPTIYYVDSDGTR-LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDAL 229 (287)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEEETT-TEEEEEEEETTCCE-EECSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCCEEEEECCCceE-EEcCeEEEecchHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999887799999999999975 58999999999999 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
+++++||..+.+||..++++++|++|+++|++..
T Consensus 230 ~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l 263 (287)
T 3nzj_K 230 YLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 263 (287)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEe
Confidence 9999999999999999999999999999996654
No 18
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=5.2e-47 Score=303.33 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=182.0
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++.+|.++ +||++++|+||||++ ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||+++++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~ 156 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLAS 156 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeCC--CCEEEEECCCCCE-EecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 99999988764 699999999999974 7999999999998 6999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCc-EEEE---EeeccCC
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDK-VTVR---HVKTRMD 205 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g-~~~~---~~~~~~~ 205 (205)
+||+.+.++|..++++++|++|+++| ++.. .++.+|+
T Consensus 157 ~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~~~~~~~ 197 (222)
T 1ryp_I 157 DAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE 197 (222)
T ss_dssp HHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCCC
T ss_pred HHHHHHHhccccCCCcEEEEEEECCCCEEEEeceecCCccc
Confidence 99999999999999999999999999 7754 3555664
No 19
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=4.8e-47 Score=309.71 Aligned_cols=196 Identities=21% Similarity=0.245 Sum_probs=180.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v 105 (261)
T 3nzj_H 26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRV 105 (261)
T ss_dssp ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHH
Q psy15275 85 KVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLF 164 (205)
Q Consensus 85 ~~la~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~ 164 (205)
+.+++++++.+|.++ +||++++|+||||++ ||+||++||+|++ .++++.|+|+|+++++++||+.|+++|+++||+
T Consensus 106 ~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~--Gp~Ly~iDp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~ 181 (261)
T 3nzj_H 106 VSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 181 (261)
T ss_dssp HHHHHHHHHHHHHTT-TCSCEEEEEEEEETT--EEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhc-CcccEEEEEEEEeCC--CCEEEEECCCccE-EecCeEEeccchHHHHHHHHHHhccCCCHHHHH
Confidence 999999999988763 599999999999984 7999999999999 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCcEEEEEEeCCc-EEEE---EeeccC
Q psy15275 165 ETIAQALVNACERNAVSGWGAVVYIIEQDK-VTVR---HVKTRM 204 (205)
Q Consensus 165 ~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g-~~~~---~~~~~~ 204 (205)
+++.+||..+.++|..++++++|++|+++| ++.. .+|.+|
T Consensus 182 ~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~~~~~ 225 (261)
T 3nzj_H 182 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVR 225 (261)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccCCCcc
Confidence 999999999999999999999999999999 4332 345555
No 20
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=3e-47 Score=300.37 Aligned_cols=190 Identities=18% Similarity=0.274 Sum_probs=179.0
Q ss_pred CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 8 GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 8 g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
++|+|||+++||||||+|+|.++|.++..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 58999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHH
Q psy15275 88 LAMISNML-YERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFE 165 (205)
Q Consensus 88 a~~i~~~~-~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~ 165 (205)
++++++.+ |..| .+||++++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~-~gp~Ly~id~~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 158 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEH-EGPALYYMDYLAAL-AKAPFAAHGYGAFLTLSILDRYYTPTISRERAVE 158 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETT-TEEEEEEECTTCCE-EECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCC-CCeEEEEECCCcCe-EECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence 99998765 5433 4699999999999985 58999999999998 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEE
Q psy15275 166 TIAQALVNACERNAVSGWGAVVYIIEQDKVTVRH 199 (205)
Q Consensus 166 l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~ 199 (205)
++++||+.+.++|..+++++++++|+++|+++..
T Consensus 159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~ 192 (201)
T 1iru_K 159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD 192 (201)
T ss_dssp HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred HHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence 9999999999999999999999999999987653
No 21
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=8.7e-47 Score=297.25 Aligned_cols=190 Identities=19% Similarity=0.302 Sum_probs=179.1
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++++|.+| +||++++|+||||++ ++|+||. |+|++....+++++|+|+++++++||+.|+++|+++||++++.
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~-~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~ 156 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQR-EGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTT 156 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETT-TEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCC-CCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 99999999765 599999999999985 5899999 9999744556777899999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
+||..+.++|..++++++|++|+++|++++.++.
T Consensus 157 ~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~ 190 (199)
T 3unf_N 157 NAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG 190 (199)
T ss_dssp HHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred HHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence 9999999999999999999999999999887764
No 22
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.7e-47 Score=309.99 Aligned_cols=185 Identities=18% Similarity=0.215 Sum_probs=176.3
Q ss_pred cc-CceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 6 YN-GGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 6 ~~-g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 27 ~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v 105 (243)
T 1ryp_A 27 NQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPC 105 (243)
T ss_dssp TTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred hcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46 9999999999999999999998 677778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC----
Q psy15275 85 KVLLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP---- 156 (205)
Q Consensus 85 ~~la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~---- 156 (205)
+.+++++++++ |.+| +|||+|++||||||++ ++|+||++||+|++ .++++.|+|+|++.++++||+.|++
T Consensus 106 ~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~-~gp~Ly~~dp~G~~-~~~~~~a~G~gs~~a~~~Le~~~~~~~~~ 183 (243)
T 1ryp_A 106 DVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEE-LGPSIYKTDPAGYY-VGYKATATGPKQQEITTNLENHFKKSKID 183 (243)
T ss_dssp HHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhccCCccccceEEEEEEEcCC-CCcEEEEEcCCCCE-EEEEEEEECCCcHHHHHHHHHHhhhcccc
Confidence 99999999998 7766 7999999999999975 58999999999999 5899999999999999999999998
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 157 ---NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 157 ---~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
+|+++||++++++||..+.++| .++++++|++|+++|
T Consensus 184 ~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g 223 (243)
T 1ryp_A 184 HINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK 223 (243)
T ss_dssp SCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE
T ss_pred cccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC
Confidence 9999999999999999999999 679999999999999
No 23
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1e-46 Score=306.02 Aligned_cols=192 Identities=16% Similarity=0.244 Sum_probs=180.0
Q ss_pred cCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHH
Q psy15275 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKV 86 (205)
Q Consensus 7 ~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
+|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|..+|++.|.++++.+++.|+++++++++++.
T Consensus 35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
T 1iru_A 35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM 113 (246)
T ss_dssp TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 49999999999999999999998 56777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--Hhcc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCCH
Q psy15275 87 LLAMISNML--YERR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLEP 160 (205)
Q Consensus 87 la~~i~~~~--~~~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~~ 160 (205)
+++++++++ |.+| +|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|++ +|++
T Consensus 114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~ 191 (246)
T 1iru_A 114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEE-QGPQVYKCDPAGYY-CGFKATAAGVKQTESTSFLEKKVKKKFDWTF 191 (246)
T ss_dssp HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCC-CCeEEEEEcCCeeE-EEeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence 999999874 5554 7899999999999985 58999999999999 5899999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
+||++++++||..+.++| .++++++|++|+++|.+++.++.
T Consensus 192 eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~ 232 (246)
T 1iru_A 192 EQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTE 232 (246)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCH
T ss_pred HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCH
Confidence 999999999999999999 78999999999999987776653
No 24
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.2e-46 Score=301.88 Aligned_cols=193 Identities=20% Similarity=0.230 Sum_probs=181.8
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
||+|||+++||||||+|+|.++|.++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 68999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHH
Q psy15275 89 AMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIA 168 (205)
Q Consensus 89 ~~i~~~~~~~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~ 168 (205)
+++++.+|.++ +||++++|+||||++ ||+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+++||++++.
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~ 156 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVT--GPHLYSIYPHGST-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVS 156 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSS--CEEEEEECTTSCE-EECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHH
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCC--CCEEEEECCCCCE-EecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 99999988764 599999999999974 7999999999998 6999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCcEEEEEEeCCcEEEE---EeeccCC
Q psy15275 169 QALVNACERNAVSGWGAVVYIIEQDKVTVR---HVKTRMD 205 (205)
Q Consensus 169 ~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~---~~~~~~~ 205 (205)
+||..+.++|..++++++|++|+++|++.. .+|.+|+
T Consensus 157 ~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~~~~~~ 196 (234)
T 1iru_I 157 EAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKG 196 (234)
T ss_dssp HHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCC
T ss_pred HHHHHHHHhcccCCCCEEEEEEECCcEEEEcceecCcccc
Confidence 999999999999999999999999998744 3566664
No 25
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.3e-46 Score=304.99 Aligned_cols=195 Identities=13% Similarity=0.191 Sum_probs=180.7
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999999987768899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++++++++.+ ++|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 185 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDR-YGYQLYTSNPSGNY-TGWKAISVGANTSAAQTLLQMDYKDDMKV 185 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETT-TEEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCC-CCCEEEEECCCccE-EeeeEEEECCCcHHHHHHHHHhhhcCCCH
Confidence 99999999998543 37899999999999954 58999999999999 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEe--CCcEE--EEEee
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIE--QDKVT--VRHVK 201 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~--~~g~~--~~~~~ 201 (205)
+||++++++||..+.++|..++++++|++|+ ++|.. ++.++
T Consensus 186 eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~ 230 (244)
T 1ryp_C 186 DDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFK 230 (244)
T ss_dssp HHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECC
T ss_pred HHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECC
Confidence 9999999999999999965578999999999 99864 55554
No 26
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.2e-46 Score=301.71 Aligned_cols=190 Identities=16% Similarity=0.173 Sum_probs=177.3
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.+++. +..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~~-~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCTT-BCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCccc-ccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3579999999999999999999999974 667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+++++++++|..+ .|||+|++|+||||++ +|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus 110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~--gp~Ly~id~~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 186 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLFDCDPAGTI-NEYKATAIGSGKDAVVSFLEREYKENLPE 186 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS--CEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCC--CCEEEEECCCCCE-EeeeEEEEcCCcHHHHHHHHHHhccCCCH
Confidence 999999999998643 6899999999999973 8999999999998 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEe
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHV 200 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~ 200 (205)
+||++++++||..+.++|. ++++++|++|+++|. ++.+
T Consensus 187 eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~-~~~~ 224 (233)
T 1yar_A 187 KEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK-YRIY 224 (233)
T ss_dssp HHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC-CEEC
T ss_pred HHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC-EEEC
Confidence 9999999999999999998 689999999999984 4443
No 27
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2e-46 Score=306.66 Aligned_cols=194 Identities=13% Similarity=0.152 Sum_probs=182.1
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++...+.+||++|++|++|+++|..+|++.|.++++.+++.|++.+++++++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 107 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35899999999999999999999999998877789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC-CCC
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP-NLE 159 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-~~~ 159 (205)
+.+++++++++|.++ +|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|++ +|+
T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~ms 185 (261)
T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKH-YGFQLYQSDPSGNY-GGWKATCIGNNSAAAVSMLKQDYKEGEMT 185 (261)
T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETT-TEEEEEEEETTTEE-EECSEEEESTTTTHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCC-CCcEEEEECCCceE-EeeeeEEeCcccHHHHHHHHHhhccCCCC
Confidence 999999999998753 7899999999999975 58999999999999 5899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE--EEEe
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT--VRHV 200 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~--~~~~ 200 (205)
++||++++++||..+.++|..++++++|++|+++|.. ++.+
T Consensus 186 ~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l 228 (261)
T 1iru_C 186 LKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVL 228 (261)
T ss_dssp HHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEEC
Confidence 9999999999999999999999999999999999853 4444
No 28
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.5e-46 Score=300.58 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=175.2
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
.++|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 106 (233)
T 1iru_B 28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPT 106 (233)
T ss_dssp HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3579999999999999999999998 466778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++++++++. ++ +|||+|++|+||||. ++|+||.+||+|++ .++++.++|+|+++++++||+.|+++|++
T Consensus 107 ~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~--~gp~Ly~id~~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~ms~ 183 (233)
T 1iru_B 107 AQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE--GRPYLFQSDPSGAY-FAWKATAMGKNYVNGKTFLEKRYNEDLEL 183 (233)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS--SSEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC--CCCeEEEECCCCCE-EEeeEEEECCCCHHHHHHHHHHhccCCCH
Confidence 9999999999854 33 789999999999995 48999999999999 58999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEE
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVT 196 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~ 196 (205)
+||++++++||..+.++| .++++++|++|+++|++
T Consensus 184 eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~ 218 (233)
T 1iru_B 184 EDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFR 218 (233)
T ss_dssp HHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEE
Confidence 999999999999999999 66899999999999944
No 29
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.8e-46 Score=301.93 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=178.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++ .++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 357999999999999999999999999876 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC
Q psy15275 85 KVLLAMISNMLYERR----------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW 154 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~ 154 (205)
+.+++++++++|.++ .|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~ 179 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD-DGYQLFHAEPSGTF-YRYNAKAIGSGSEGAQAELLNEW 179 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCC-CCCEEEEECCCCCE-eccCEEEECCCCHHHHHHHHHhh
Confidence 999999999887631 6799999999999965 58999999999999 58899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275 155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK 201 (205)
Q Consensus 155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~ 201 (205)
+++|+++||++++++||..+.++ ..++++++|++|+++|. ++.++
T Consensus 180 ~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~~ 224 (242)
T 1ryp_E 180 HSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG-FKIYD 224 (242)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE-EEECC
T ss_pred ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC-eEECC
Confidence 99999999999999999999999 66789999999999997 55444
No 30
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.9e-45 Score=297.65 Aligned_cols=192 Identities=18% Similarity=0.313 Sum_probs=176.9
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV 104 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999999998766799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcC---CCC
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLW---EPN 157 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~---~~~ 157 (205)
+.+++++++++|.++ +|||+|++|+||||+++++|+||.+||+|++ .++++.|+|+|+++++++||+.| +++
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ 183 (241)
T 1ryp_D 105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIY-SSWSAQTIGRNSKTVREFLEKNYDRKEPP 183 (241)
T ss_dssp HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHTTCCTTSCC
T ss_pred HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCE-EEeeeEEECCCcHHHHHHHHHhhhcccCC
Confidence 999999999998742 5899999999999973248999999999999 58899999999999999999999 999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275 158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK 201 (205)
Q Consensus 158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~ 201 (205)
|+++||++++++||..+.+ .++++++|++|+++|. ++.++
T Consensus 184 ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~-~~~l~ 223 (241)
T 1ryp_D 184 ATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSD-IVALS 223 (241)
T ss_dssp CSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTE-EEECC
T ss_pred CCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCc-EEECC
Confidence 9999999999999999986 6789999999999973 44443
No 31
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=8.9e-46 Score=299.60 Aligned_cols=191 Identities=17% Similarity=0.236 Sum_probs=177.9
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|..+ .++.+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 457999999999999999999999999877 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cc-------CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCC
Q psy15275 85 KVLLAMISNMLYE--RR-------FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE 155 (205)
Q Consensus 85 ~~la~~i~~~~~~--~r-------~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~ 155 (205)
+.++++++++++. ++ .|||+|++|+||||. ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~ 186 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE--KGPQLFHMDPSGTF-VQCDARAIGSASEGAQSSLQELYH 186 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET--TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC--CCCEEEEECCCCcE-EecceEEECCCcHHHHHHHHHHhc
Confidence 9999999998843 33 579999999999994 58999999999999 689999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEee
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVK 201 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~ 201 (205)
++|+++||++++++||..+.++ ..++++++|++|+++|. ++.++
T Consensus 187 ~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~l~ 230 (241)
T 1iru_E 187 KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN-FHMFT 230 (241)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC-CEECC
T ss_pred cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC-eEECC
Confidence 9999999999999999999999 66799999999999987 55544
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=5.2e-45 Score=294.05 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=175.7
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVLL 88 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (205)
+|+|||+++||||||+|+|.++|.++..++.+||++|+++++|+++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---CCcceeeeEEEEecCCCCC-----cEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcCCCCC
Q psy15275 89 AMISNMLYERR---FGPYFVEPMVVGLDPETAE-----PIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLWEPNL 158 (205)
Q Consensus 89 ~~i~~~~~~~r---~~P~~v~~iv~G~d~~~~~-----p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~ 158 (205)
+.+++++|.++ +|||+|++|+||||++ ++ |+||.+||+|++ .++ ++.|+|+|+++++++||+.|+++|
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~-~g~~~~~p~Ly~idp~G~~-~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 158 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLD-ADDESRAGRIVSYDVVGGR-YEERAGYHAVGSGSLFAKSALKKIYSPDS 158 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTT-CSSTTSCEEEEEECTTSCE-EECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECC-CCccCCCCEEEEECCCCce-EEeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence 99999998754 7899999999999985 46 999999999998 477 899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCc--E-----EEEEEeCCcEEE
Q psy15275 159 EPDDLFETIAQALVNACERNAVSGWG--A-----VVYIIEQDKVTV 197 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~~~g~~~ 197 (205)
+++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 204 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence 99999999999999999999987653 2 999999998654
No 33
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.6e-46 Score=303.05 Aligned_cols=191 Identities=20% Similarity=0.311 Sum_probs=177.8
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
.+|+|+|||+++||||||+|+|.+++ ++..++.+|||+|++|++|+++|..+|++.|+++++.+++.|++.++++++++
T Consensus 36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~ 114 (264)
T 3h4p_A 36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIE 114 (264)
T ss_dssp HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Confidence 58999999999999999999999987 46678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHH
Q psy15275 86 VLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD 161 (205)
Q Consensus 86 ~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 161 (205)
.++++++++++.+ + +|||+|++||||||+ ++|+||.+||+|++ .++++.|+|+|+++++++|++.|+++|+++
T Consensus 115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~--~gp~Ly~iDp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 191 (264)
T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK--NEARLFETDPSGAL-IEYKATAIGSGRPVVMELLEKEYRDDITLD 191 (264)
T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET--TEEEEEEECTTCCC-EEESEEEESTTHHHHTTTHHHHCCTTCCSH
T ss_pred HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC--CcCEEEEECCCceE-EecCeEEECCCHHHHHHHHHHhccCCCCHH
Confidence 9999999988653 2 689999999999997 48999999999998 589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEEEeec
Q psy15275 162 DLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKT 202 (205)
Q Consensus 162 ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~ 202 (205)
||++++++||..+.++ .++++++|++|++++..++.++.
T Consensus 192 ea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~ 230 (264)
T 3h4p_A 192 EGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV 230 (264)
T ss_dssp HHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred HHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence 9999999999999987 68899999999998777776654
No 34
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=9e-46 Score=301.67 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=175.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++ .++.+|||+|++|++|+++|..+|++.|.++++.+++.|++++++++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 457999999999999999999999999887 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.+++++++++|.++ +|||+|++||||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 186 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVN-DGAQLYMIDPSGVS-YGYWGCAIGKARQAAKTEIEKLQMKEMTC 186 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETT-TEEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHTTSCGGGCCH
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCC-CCcEEEEEcCCCCE-EeeeeEEecCccHHHHHHHHHhccCCCCH
Confidence 999999999997653 6899999999999954 58999999999999 58899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEeCC
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIEQD 193 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~ 193 (205)
+||+++++++|..+.++|..++.+++|++|+++
T Consensus 187 eea~~la~~al~~~~~~~~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 187 RDIVKEVAKIIYIVHDEVKDKAFELELSWVGEL 219 (254)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence 999999999999999888777889999999987
No 35
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=6.4e-45 Score=301.52 Aligned_cols=191 Identities=18% Similarity=0.221 Sum_probs=179.3
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|++.++|.++..++.+|||+|+++++|+++|..+|++.|.++++.+++.|++.+++++++
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv 141 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF 141 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCcceeeeEEEEecCCCCC-----cEEEEEcCCCccccCC--cceeecCchhhhhhhhhhcC
Q psy15275 85 KVLLAMISNMLYERR---FGPYFVEPMVVGLDPETAE-----PIIGNMDLIGCVNQPS--DFVVGGPCSDQLYGMCETLW 154 (205)
Q Consensus 85 ~~la~~i~~~~~~~r---~~P~~v~~iv~G~d~~~~~-----p~ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~ 154 (205)
+.+++.|++++|.++ ++||+|++||||||++ ++ |+||++||+|++ .++ ++.|+|+|+++++++||+.|
T Consensus 142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~-~g~~~~~p~Ly~iDp~G~~-~e~~~~~~AiGsgs~~a~~~Le~~y 219 (294)
T 1q5r_H 142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLD-ADDESRAGRIVSYDVVGGR-YEERAGYHAVGSGSLFAKSALKKIY 219 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTT-CSCTTSCEEEEEECSSSCE-EECCSSEEEESTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCC-CCcCCCCCEEEEECCCCeE-EecCCCeEEEecCcHHHHHHHHHhc
Confidence 999999999998754 6899999999999985 46 999999999998 477 89999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCc--E-----EEEEEeCCcEEE
Q psy15275 155 EPNLEPDDLFETIAQALVNACERNAVSGWG--A-----VVYIIEQDKVTV 197 (205)
Q Consensus 155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~--i-----~i~ii~~~g~~~ 197 (205)
+++|+++||++++++||..+.++|..+++. + +|++|+++|++.
T Consensus 220 ~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 220 SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence 999999999999999999999999987654 5 999999999654
No 36
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=5.8e-45 Score=295.30 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=176.8
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|++.++|.++.. ..+||++|+++++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 105 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 105 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 35799999999999999999999999987654 45999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc---CCCC
Q psy15275 85 KVLLAMISNMLYER--R--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL---WEPN 157 (205)
Q Consensus 85 ~~la~~i~~~~~~~--r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~ 157 (205)
+.++++++++++.+ + +|||++++|+||||++ +|+||.+||+|++ .++++.|+|+|+++++++||+. |+++
T Consensus 106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ 182 (244)
T 1ryp_G 106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLYMLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEG 182 (244)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCC--cCEEEEECCCCCE-EEeeEEEECCChHHHHHHHHHhHhhcCCC
Confidence 99999999998553 2 6899999999999974 8999999999999 5889999999999999999997 9999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeC---CcEEEE
Q psy15275 158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQ---DKVTVR 198 (205)
Q Consensus 158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~---~g~~~~ 198 (205)
|+++||++++++||..+.++|..++.+++|++|++ +|.+..
T Consensus 183 ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~ 226 (244)
T 1ryp_G 183 LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF 226 (244)
T ss_dssp CCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence 99999999999999999999999899999999998 776643
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.7e-45 Score=302.92 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=179.1
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++. ...+|||+|++|++|+++|+.+|++.|.++++.+++.|++.+++++++
T Consensus 31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v 109 (288)
T 3nzj_F 31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 109 (288)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCH
Confidence 3589999999999999999999999998765 477999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhc---CCCC
Q psy15275 85 KVLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL---WEPN 157 (205)
Q Consensus 85 ~~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~ 157 (205)
+.+++++++++|.+ ++|||+|++||||||++ ||+||++||+|++ .+++++|+|+|+++++++||+. |+++
T Consensus 110 ~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~--Gp~Ly~iDp~G~~-~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ 186 (288)
T 3nzj_F 110 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLYMLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEG 186 (288)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC--CCEEEEECCCCCE-EEcCEEEEcCcHHHHHHHHHHhccccCCC
Confidence 99999999998654 27899999999999984 7999999999999 5899999999999999999999 9999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeC--CcEEEEEeec
Q psy15275 158 LEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQ--DKVTVRHVKT 202 (205)
Q Consensus 158 ~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~--~g~~~~~~~~ 202 (205)
|+++||++++++||..+.+++..++.+++|++|++ .+..++.+|-
T Consensus 187 ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~ 233 (288)
T 3nzj_F 187 LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKG 233 (288)
T ss_dssp CCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCH
T ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCH
Confidence 99999999999999999999988888999999999 4545555553
No 38
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.9e-45 Score=296.98 Aligned_cols=184 Identities=15% Similarity=0.248 Sum_probs=172.6
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|. +..++.+|||+|++|++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (248)
T 1iru_D 26 VKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTV 104 (248)
T ss_dssp HHTSCCEEEECCSSEEEEEECCCCCCSS-SCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeecccccC-ccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3579999999999999999999999985 567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC--
Q psy15275 85 KVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL-- 158 (205)
Q Consensus 85 ~~la~~i~~~~~~~r----~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~-- 158 (205)
+.++++++++++.++ .|||+|++||||||++ ++|+||.+||+|++ .++++.++|+|+++++++||+.|+++|
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~m~~ 182 (248)
T 1iru_D 105 EYITRYIASLKQRYTQSNGRRPFGISALIVGFDFD-GTPRLYQTDPSGTY-HAWKANAIGRGAKSVREFLEKNYTDEAIE 182 (248)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSS-SCEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHTTTCCSSTTC
T ss_pred HHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCC-CCcEEEEEcCCCcE-EEeeEEEECCCcHHHHHHHHHhhcccccC
Confidence 999999999986642 6899999999999965 58999999999998 689999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 159 EPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
+++||++++++||..+.+ .++++++|++|+++|
T Consensus 183 s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g 215 (248)
T 1iru_D 183 TDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ 215 (248)
T ss_dssp SHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS
T ss_pred CHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC
Confidence 999999999999998886 468899999999998
No 39
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.3e-44 Score=291.20 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=171.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.+.+. +..++.+||++|+++++|+++|..+|++.+.++++.+++.|++.+++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITV 109 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3579999999999999999999999875 447899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cc--CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCH
Q psy15275 85 KVLLAMISNMLYE--RR--FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEP 160 (205)
Q Consensus 85 ~~la~~i~~~~~~--~r--~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 160 (205)
+.++++++++++. ++ .|||++++|+|||| + +|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|++
T Consensus 110 ~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 185 (246)
T 1j2p_A 110 KELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-E--VPKLYETDPSGAL-LEYKATAIGMGRMAVTEFFEKEYRDDLSF 185 (246)
T ss_dssp HHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-S--SEEEEEECTTCCE-EEBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-C--CCEEEEECCCceE-EeeeEEEECCCcHHHHHHHHHHhccCCCH
Confidence 9999999999854 33 68999999999999 4 8999999999999 58899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcEEEEEEe-CC
Q psy15275 161 DDLFETIAQALVNACERNAVSGWGAVVYIIE-QD 193 (205)
Q Consensus 161 ~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~-~~ 193 (205)
+||++++++||..+.++ ..++++++|++|+ ++
T Consensus 186 eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~ 218 (246)
T 1j2p_A 186 DDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDD 218 (246)
T ss_dssp HHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCC
Confidence 99999999999999998 7789999999999 64
No 40
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.3e-44 Score=299.42 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=160.5
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCH
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSP 84 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (205)
..+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++.++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 56899999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCcceeeeEEEEecCCCCC-----cEEEEEcCCCccc-cCCcceeecCchhhhhhhhhhcCC
Q psy15275 85 KVLLAMISNMLYERR---FGPYFVEPMVVGLDPETAE-----PIIGNMDLIGCVN-QPSDFVVGGPCSDQLYGMCETLWE 155 (205)
Q Consensus 85 ~~la~~i~~~~~~~r---~~P~~v~~iv~G~d~~~~~-----p~ly~id~~G~~~-~~~~~~a~G~g~~~~~~~Le~~~~ 155 (205)
+.+++.+++++|.++ +|||+|++|+||||++ ++ |+||++||+|++. .+++|.|+|+|+++++++||+.|+
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~-g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~ 212 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIH-ASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS 212 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTT-CSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCC-CCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC
Confidence 999999999998865 5799999999999985 45 9999999999983 388999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCc-------EEEEEEeCCcEEE
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWG-------AVVYIIEQDKVTV 197 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~-------i~i~ii~~~g~~~ 197 (205)
++|+++||++++++||..+.++|..+++. ++|++|+++|++.
T Consensus 213 ~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 213 QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence 99999999999999999999999987753 1699999998654
No 41
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.2e-44 Score=291.68 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=170.8
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
++|+|+|||+++||||||+|+|.+.|.. ++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 105 (233)
T 1ryp_F 29 KQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE 105 (233)
T ss_dssp HTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 5799999999999999999999999853 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CC-
Q psy15275 86 VLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NL- 158 (205)
Q Consensus 86 ~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~- 158 (205)
.++++++++++.+ +.|||+|++|+||||++ ||+||.+||+|++ .++++.|+|+|+++++++||+.|++ +|
T Consensus 106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~ 182 (233)
T 1ryp_F 106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS--GAHLLEFQPSGNV-TELYGTAIGARSQGAKTYLERTLDTFIKID 182 (233)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT--EEEEEEECTTSCE-EEESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCC--cCEEEEECCCCCe-eeeeEEEECCCcHHHHHHHHHHhccccccC
Confidence 9999999988542 26799999999999974 7999999999999 5889999999999999999999998 99
Q ss_pred -CHHHHHHHHHHHHHHHHhhc-cccCCcEEEEEEeCCcE
Q psy15275 159 -EPDDLFETIAQALVNACERN-AVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 159 -~~~ea~~l~~~~l~~~~~~d-~~~~~~i~i~ii~~~g~ 195 (205)
+++||+++++++|..+. +| ..++++++|++|++++.
T Consensus 183 ~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~ 220 (233)
T 1ryp_F 183 GNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP 220 (233)
T ss_dssp SCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC
Confidence 99999999999999999 77 56899999999999954
No 42
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.3e-44 Score=296.06 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=172.1
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPK 85 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
++|+|+|||+++||||||+|+|.++|.. ++.+||++|+++++|+++|..+|++.|.++++.+++.|++.++++++++
T Consensus 30 ~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~ 106 (263)
T 1iru_F 30 KQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS 106 (263)
T ss_dssp HHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 5799999999999999999999999863 5889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCC--CCC
Q psy15275 86 VLLAMISNMLYER----RFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEP--NLE 159 (205)
Q Consensus 86 ~la~~i~~~~~~~----r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~~~ 159 (205)
.+++++++++|.+ ..|||+|++||||||++ +|+||.+||+|++ .++++.|+|+|+++++++||+.|++ +|+
T Consensus 107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~--gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms 183 (263)
T 1iru_F 107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM--GPHIFQTCPSANY-FDCRAMSIGARSQSARTYLERHMSEFMECN 183 (263)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT--EEEEEEECSSSCE-EEESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhcccccccceEEEEEEEEcCC--CCEEEEECCCCCE-EEeeEEEcCcccHHHHHHHHHHhcccCCCC
Confidence 9999999998743 26899999999999974 8999999999999 5889999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHHHHhhc-cccCCcEEEEEEeCCc
Q psy15275 160 PDDLFETIAQALVNACERN-AVSGWGAVVYIIEQDK 194 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d-~~~~~~i~i~ii~~~g 194 (205)
++||++++++||..+.++| ..++++++|++|++++
T Consensus 184 ~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~ 219 (263)
T 1iru_F 184 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL 219 (263)
T ss_dssp HHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC
Confidence 9999999999999999999 4789999999999995
No 43
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=5.3e-44 Score=289.69 Aligned_cols=185 Identities=16% Similarity=0.203 Sum_probs=163.8
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCCH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMSP 84 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (205)
.+|+|+|||+++||||||+|+| .++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ .++++
T Consensus 25 ~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v 96 (248)
T 3mi0_A 25 ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG 96 (248)
T ss_dssp HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 5799999999999999999998 35789999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHH---HHhccCCcceeeeEEEEecC--CCCCcEEEEEcCCCccccC-CcceeecCchhhhhhhhhhcCCCCC
Q psy15275 85 KVLLAMISNM---LYERRFGPYFVEPMVVGLDP--ETAEPIIGNMDLIGCVNQP-SDFVVGGPCSDQLYGMCETLWEPNL 158 (205)
Q Consensus 85 ~~la~~i~~~---~~~~r~~P~~v~~iv~G~d~--~~~~p~ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~ 158 (205)
+.+++++++. .|++++|||+|++||||||+ +.++|+||++||+|++ .. +++.|+|+|+++++++||++|+++|
T Consensus 97 ~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~-~~e~~~~a~Gsgs~~a~~~Le~~y~~~m 175 (248)
T 3mi0_A 97 RQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSI-ADEPHFVVMGGTTEPIANALKESYAENA 175 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCE-EEESSEEEESSCHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEE-eecccEEEECccHHHHHHHHHhhcCCCC
Confidence 9999999954 35556889999999999997 1258999999999998 64 9999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-------hhccccCCcEEEEEEeCCc--EEEEEe
Q psy15275 159 EPDDLFETIAQALVNAC-------ERNAVSGWGAVVYIIEQDK--VTVRHV 200 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~-------~~d~~~~~~i~i~ii~~~g--~~~~~~ 200 (205)
+++||++++++||..+. +++ .++++++|++|+++| .+++.+
T Consensus 176 t~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l 225 (248)
T 3mi0_A 176 SLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRI 225 (248)
T ss_dssp CHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEEC
T ss_pred CHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEEC
Confidence 99999999999999998 554 567899999999997 344444
No 44
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9.3e-44 Score=289.20 Aligned_cols=186 Identities=19% Similarity=0.222 Sum_probs=171.9
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhh-hhhhcCCcCC
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNL-YELKENRKMS 83 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~ 83 (205)
..+|+|+|||+++||||||+|+|.+ +.++..++.+||++|+++++|+++|..+|++.+.++++.+++. |++.++.+++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP 106 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3579999999999999999999998 6677789999999999999999999999999999999999998 9989999999
Q ss_pred HHHHHHHHHHHHHh----ccCCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCC
Q psy15275 84 PKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLE 159 (205)
Q Consensus 84 ~~~la~~i~~~~~~----~r~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 159 (205)
++.+++.++++++. .++|||+|++|+||||++ ++|+||.+||+|++ .++++.|+|+|+++++++||+.|+++|+
T Consensus 107 ~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~-~gp~Ly~idp~G~~-~~~~~~aiGsgs~~a~~~Le~~~~~~ms 184 (250)
T 1ryp_B 107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEF-NGFSLYQVDPSGSY-FPWKATAIGKGSVAAKTFLEKRWNDELE 184 (250)
T ss_dssp HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETT-TEEEEEEECTTSCE-EEBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCC-CCcEEEEECCCCCE-EeeceeEecCccHHHHHHHHHHhccCCC
Confidence 99998888887644 236899999999999985 58999999999999 6899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 160 PDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 160 ~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
++||++++++||..+.+++. ++++++|++|++++
T Consensus 185 ~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~ 218 (250)
T 1ryp_B 185 LEDAIHIALLTLKESVEGEF-NGDTIELAIIGDEN 218 (250)
T ss_dssp HHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccc
Confidence 99999999999999998865 68999999999973
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=6.7e-43 Score=285.32 Aligned_cols=179 Identities=15% Similarity=0.224 Sum_probs=163.3
Q ss_pred ccCceEEEEEeCCEEEEeEecccccCceeeeccccceEEecCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcC-CcCCH
Q psy15275 6 YNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKEN-RKMSP 84 (205)
Q Consensus 6 ~~g~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (205)
.+|+|+|||+++||||||+|+| +++.+|||+|++|++|+++|..+|++.|.++++.+++.|++.++ +++++
T Consensus 25 ~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v 96 (259)
T 1q5q_A 25 ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG 96 (259)
T ss_dssp HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCH
Confidence 5799999999999999999998 36789999999999999999999999999999999999988877 59999
Q ss_pred HHHHHHHHHH---HHhccCCcceeeeEEEEec--C-CCCCcEEEEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCC
Q psy15275 85 KVLLAMISNM---LYERRFGPYFVEPMVVGLD--P-ETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNL 158 (205)
Q Consensus 85 ~~la~~i~~~---~~~~r~~P~~v~~iv~G~d--~-~~~~p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 158 (205)
+.++++++++ .|+.++|||+|++|||||| + + ++|+||++||+|++...+++.++|+|++.++++||+.|+++|
T Consensus 97 ~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~-~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~m 175 (259)
T 1q5q_A 97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSP-KAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL 175 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCC-CCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCC-CCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCC
Confidence 9999999995 4666788999999999999 3 3 589999999999983278999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-----hhccccCCcEEEEEEeCCc
Q psy15275 159 EPDDLFETIAQALVNAC-----ERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 159 ~~~ea~~l~~~~l~~~~-----~~d~~~~~~i~i~ii~~~g 194 (205)
+++||++++++||..+. ++|. ++++++|++|+++|
T Consensus 176 s~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 176 DLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp CHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence 99999999999999998 8999 88999999999995
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.1e-38 Score=247.40 Aligned_cols=170 Identities=12% Similarity=0.163 Sum_probs=151.3
Q ss_pred cccCceEEEEEeCCEEEEeEecccccCce-eeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcC
Q psy15275 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGT-ALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKM 82 (205)
Q Consensus 5 ~~~g~t~igi~~~dgVvla~d~~~~~g~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 82 (205)
+.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+ + .
T Consensus 2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~ 76 (180)
T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N 76 (180)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence 36799999999999999999999999988 889999999999 999999999999999999999999999887 3 2
Q ss_pred CHHHHHHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccC--CcceeecCchhhhhhhhhhcCCC---
Q psy15275 83 SPKVLLAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQP--SDFVVGGPCSDQLYGMCETLWEP--- 156 (205)
Q Consensus 83 ~~~~la~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~--~~~~a~G~g~~~~~~~Le~~~~~--- 156 (205)
.++.++ .+++.+++++ .|||++++|+| | +|+||.+||+|++ .+ +++.|+|+|+++++++||+.|++
T Consensus 77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~-~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~ 148 (180)
T 2z3b_A 77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEV-IEPDDGILAIGSGGNYALAAGRALKKHAGE 148 (180)
T ss_dssp HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCE-ECCSSSEEEESTTHHHHHHHHHHHHHHHGG
T ss_pred hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcE-EEeCCCEEEECCCHHHHHHHHHHhhhccCC
Confidence 233333 4566665554 67999999998 3 6999999999998 45 59999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
+|+.+| ++.+||+.+.++|..++++++|.+|
T Consensus 149 ~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 149 SMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 999999 4779999999999999999999988
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-37 Score=239.61 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=149.3
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
||+|||+++||||||+|+|.++|.++.+++.+|||+| ++|++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6899999999999999999999988999999999999 99999999999999999999999999988743 26666
Q ss_pred HHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc--ceeecCchhhhhhhhhhcCC-CCCCHHHH
Q psy15275 88 LAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD--FVVGGPCSDQLYGMCETLWE-PNLEPDDL 163 (205)
Q Consensus 88 a~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~~~~~ea 163 (205)
+++. +.++++| .+||++++|+| | +|+||.+||+|++ .+++ +.|+|+|+++++++||+.|+ ++|+.
T Consensus 76 ~~l~-~~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~-~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~--- 144 (171)
T 1m4y_A 76 VELA-KDWRTDRVLRRLEALLLVA--D----KENIFIISGNGEV-IQPDDDAAAIGSGGPYALAAAKALLRNTDLSA--- 144 (171)
T ss_dssp HHHH-HHHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCE-ECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred HHHH-HHHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCE-EecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence 6654 4666666 56799999998 4 6999999999998 5876 99999999999999999999 99996
Q ss_pred HHHHHHHHHHHHhhccccCCcEEEEEE
Q psy15275 164 FETIAQALVNACERNAVSGWGAVVYII 190 (205)
Q Consensus 164 ~~l~~~~l~~~~~~d~~~~~~i~i~ii 190 (205)
.+++++||+.+.+||..++++++|.++
T Consensus 145 ~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.8e-37 Score=239.24 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=151.2
Q ss_pred ceEEEEEeCCEEEEeEecccccCceeeeccccceEEe-cCeEEEEeCCChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHH
Q psy15275 9 GSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQV-GSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRKMSPKVL 87 (205)
Q Consensus 9 ~t~igi~~~dgVvla~d~~~~~g~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (205)
+|+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6899999999999999999999988889999999999 9999999999999999999999999998874 45666
Q ss_pred HHHHHHHHHhcc-CCcceeeeEEEEecCCCCCcEEEEEcCCCccccCCc---ceeecCchhhhhhhhhhcCC-CCCCHHH
Q psy15275 88 LAMISNMLYERR-FGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSD---FVVGGPCSDQLYGMCETLWE-PNLEPDD 162 (205)
Q Consensus 88 a~~i~~~~~~~r-~~P~~v~~iv~G~d~~~~~p~ly~id~~G~~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~~~~~e 162 (205)
+..+++.++++| .|| ++++++|+| +|+||++||+|++ .+++ +.|+|+|+++++++||+.|+ ++|+.+
T Consensus 75 ~~~l~~~~~~~~~~r~--~~~~l~g~d----~p~Ly~~d~~G~~-~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~- 146 (174)
T 1g3k_A 75 AVELAKDWRTDRALRK--LEAMLIVAD----EKESLIITGIGDV-VQPEEDQILAIGSGGNYALSAARALVENTELSAH- 146 (174)
T ss_dssp HHHHHHHHHHSTTGGG--CCCEEEEEC----SSCEEEEETTTEE-ECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred HHHHHHHHHhccCcCc--ceEEEEEEC----CCEEEEEcCCCcE-EecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence 677788777776 456 467888886 5999999999998 5766 99999999999999999999 999954
Q ss_pred HHHHHHHHHHHHHhhccccCCcEEEEEEe
Q psy15275 163 LFETIAQALVNACERNAVSGWGAVVYIIE 191 (205)
Q Consensus 163 a~~l~~~~l~~~~~~d~~~~~~i~i~ii~ 191 (205)
+++.+||+.+.++|..++++++|++|+
T Consensus 147 --~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 --EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred --HHHHHHHHHHHHhccccCCceEEEEec
Confidence 799999999999999999999999986
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=51.92 E-value=29 Score=26.17 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEEE
Q psy15275 155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTVR 198 (205)
Q Consensus 155 ~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~~ 198 (205)
.+.+++++|.+++..++..+.++ +.++.|.|++..|...-
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~lla 101 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTLV 101 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEEE
Confidence 46799999999999999999876 45799999998885543
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=49.09 E-value=19 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcEEE
Q psy15275 156 PNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKVTV 197 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~~~ 197 (205)
+.+++++|.+++..+...+.++ +.++.|.|++..|...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 3589999999999999998875 4589999999888543
No 51
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=40.55 E-value=43 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
+|+.+||+..+.+.|..+..+-....+.-.+.||+-.|.
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~ 45 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 45 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 689999999998888877642111123457888887775
No 52
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=37.11 E-value=30 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
+|+.+||+..+.+.|..+...-....+.-.+.||+-.|.
T Consensus 15 Gl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~ 53 (96)
T 2d9i_A 15 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 53 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCC
Confidence 689999999999988877531111123447888887663
No 53
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=30.55 E-value=52 Score=20.19 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy15275 156 PNLEPDDLFETIAQALVNACERN 178 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d 178 (205)
.+||.++|.++.++.++..+-+|
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMike 45 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVVRE 45 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999877554
No 54
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=30.06 E-value=54 Score=19.98 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q psy15275 156 PNLEPDDLFETIAQALVNACERN 178 (205)
Q Consensus 156 ~~~~~~ea~~l~~~~l~~~~~~d 178 (205)
.+||.++|.++.++.++..+-+|
T Consensus 28 ~~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 28 SAMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999877554
No 55
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=28.09 E-value=1e+02 Score=21.88 Aligned_cols=55 Identities=5% Similarity=-0.054 Sum_probs=32.5
Q ss_pred cceeecCchhhhhhhhhh----cCCCCCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCc
Q psy15275 135 DFVVGGPCSDQLYGMCET----LWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDK 194 (205)
Q Consensus 135 ~~~a~G~g~~~~~~~Le~----~~~~~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g 194 (205)
...++|.|..+++..+-. ..+..++++||.+-+++-+..... ...--+..++++|
T Consensus 48 a~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~~-----~~~ggvIa~d~~G 106 (141)
T 1apy_B 48 AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFP-----EFFGAVICANVTG 106 (141)
T ss_dssp EEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCT-----TCCEEEEEEETTS
T ss_pred EEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----CCcEEEEEEeCCC
Confidence 456899998876654432 223588999998777654433211 1123455566666
No 56
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=26.07 E-value=13 Score=30.19 Aligned_cols=35 Identities=14% Similarity=-0.046 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccccCCcceeecCchhhhhhhhhhc
Q psy15275 119 PIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL 153 (205)
Q Consensus 119 p~ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~ 153 (205)
|..|.||+.|.+...+.-+-.+.....+...|++.
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~ 137 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRL 137 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhh
Confidence 67899999999743333333344444555555543
No 57
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=24.12 E-value=53 Score=21.14 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=29.9
Q ss_pred EEEcCCCccccCCcceeecCchhhhhhhhhhcCCCCCCHHHHHHHHHHHHHHHH
Q psy15275 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNAC 175 (205)
Q Consensus 122 y~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ea~~l~~~~l~~~~ 175 (205)
..+.|+|+-.+...|...|.-.....+ -.|++|+.||-+.+.++...+.
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG-----~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALG-----AYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEE-----ETTTSCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeE-----CCCCCCHHHHHHHHHHHHHHHH
Confidence 357888875444455433321111100 1378999999999999886654
No 58
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=23.40 E-value=1.3e+02 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHHhhhhhhhcCCcCCHHHHHHHHHHHH
Q psy15275 56 LATDTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNML 95 (205)
Q Consensus 56 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~i~~~~ 95 (205)
++.+--.+++++|. |-..++..++++.+.+.+...+
T Consensus 62 LTe~HWeVI~flR~----fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFLRE----YYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH----HHHHHCCCChHHHHHHHHHHHh
Confidence 66777788888874 4446678899999999886543
No 59
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=22.65 E-value=1.7e+02 Score=19.67 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhhhcCCcCCHHH
Q psy15275 64 YQKIRFRQNLYELKENRKMSPKV 86 (205)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
++.|+..+..|+.++|++++.++
T Consensus 16 i~~l~~Al~~Y~lD~G~YPtt~q 38 (110)
T 2kep_A 16 IKAIAAALDMYKLDNFAYPSTQQ 38 (110)
T ss_dssp HHHHHHHHHHHHHHTSSCCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCcHH
Confidence 45566667789999999987655
No 60
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=22.45 E-value=1.3e+02 Score=20.93 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccccCCcEEEEEEeCCcE
Q psy15275 157 NLEPDDLFETIAQALVNACERNAVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 157 ~~~~~ea~~l~~~~l~~~~~~d~~~~~~i~i~ii~~~g~ 195 (205)
+|+.+||+..+.+-|..+...-....+.-.+.||+-.|.
T Consensus 60 Gl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~ 98 (135)
T 2vkc_A 60 GLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGN 98 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCc
Confidence 689999999999888876531011123347888887663
No 61
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=22.05 E-value=1.8e+02 Score=23.29 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=36.2
Q ss_pred cceeecCchhhhhhhhhhc----CCCCCCHHHHHHHHHHHHHHHHh-hc-cccCCcEEEEEEeCCcE
Q psy15275 135 DFVVGGPCSDQLYGMCETL----WEPNLEPDDLFETIAQALVNACE-RN-AVSGWGAVVYIIEQDKV 195 (205)
Q Consensus 135 ~~~a~G~g~~~~~~~Le~~----~~~~~~~~ea~~l~~~~l~~~~~-~d-~~~~~~i~i~ii~~~g~ 195 (205)
-..++|.|..++...+-.. .+.+++++||.+-+++-+..... +. ...+...=+..++++|-
T Consensus 199 avs~TG~GE~iir~~~A~~i~~~m~~G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~gG~Iavd~~G~ 265 (295)
T 1p4k_A 199 AATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGE 265 (295)
T ss_dssp EEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSC
T ss_pred EEEeecccHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCceEEEEEEcCCCC
Confidence 3568899998776543322 23589999998888766655432 11 11122334455677763
No 62
>1b66_A 6-pyruvoyl tetrahydropterin synthase; tetrahydrobiopterin biosynthesis, phosphate elimination, PTE synthesis; HET: BIO; 1.90A {Rattus rattus} SCOP: d.96.1.2 PDB: 1b6z_A 1gtq_A 3i2b_A
Probab=21.36 E-value=1e+02 Score=21.60 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=30.6
Q ss_pred eCCChhHHHHHHHHHHHHh---hhhhhhc-------CCcCCHHHHHHHHHHHHHh
Q psy15275 53 LPGLATDTQTVYQKIRFRQ---NLYELKE-------NRKMSPKVLLAMISNMLYE 97 (205)
Q Consensus 53 ~sG~~~D~~~l~~~~~~~~---~~~~~~~-------~~~~~~~~la~~i~~~~~~ 97 (205)
-.|..-|+..|.+.++..+ ..|++.+ ...+|.+.+|.+|.+.+..
T Consensus 61 ~~GmV~Df~~lK~~i~~~i~~~lDH~~Ln~dvp~f~~~~pTaEnlA~~i~~~l~~ 115 (140)
T 1b66_A 61 VTGMVMNLTDLKEYMEEAIMKPLDHKNLDLDVPYFADVVSTTENVAVYIWENLQR 115 (140)
T ss_dssp TTCCSSCHHHHHHHHHHHTHHHHTTEEHHHHCGGGTSSCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHhhcCCCCcccccCcccCCCCCCHHHHHHHHHHHHHH
Confidence 3677778888888877622 2333222 3468999999999987754
Done!