RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15275
(205 letters)
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 269 bits (689), Expect = 6e-93
Identities = 124/205 (60%), Positives = 168/205 (81%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
MSIM+YNGG+++AM GKNCVAIA D+RFGIQ + +FQKIF +G +Y+GL GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
QTV Q+++FR NLYELKE R++ P L++M++N+LYE+RFGPY+ EP++ GLDP+T +P
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I ++DLIGC DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AV
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 181 SGWGAVVYIIEQDKVTVRHVKTRMD 205
SG G +V+IIE+DK+T R +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 259 bits (663), Expect = 5e-89
Identities = 111/203 (54%), Positives = 156/203 (76%), Gaps = 1/203 (0%)
Query: 3 IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQT 62
+ NGG +VAMTGK+CVAIACD R G Q +++ F+KIF G H+++G+ GLATD T
Sbjct: 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTT 61
Query: 63 VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIG 122
+ + R++ NLY+LKE R + P+ ++S+ LYERRFGPYFV P+V G++ ++ +P I
Sbjct: 62 LNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIA 121
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
DLIGC+++ DF+V G SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SG
Sbjct: 122 GFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSG 181
Query: 183 WGAVVYIIEQDKVTVRHVKTRMD 205
WGAVVYII++D+V R++K R D
Sbjct: 182 WGAVVYIIKKDEVVKRYLKMRQD 204
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 233 bits (596), Expect = 1e-78
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 11/213 (5%)
Query: 2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
S +NGG+I+A+ G++ +A D R + + K +++ +G G D
Sbjct: 3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 62
Query: 62 TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E + +
Sbjct: 63 TLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLD-EEGKGAV 121
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCE---------TLWEPNLEPDDLFETIAQALV 172
+ D +G Q F GG S L + + + L D + +
Sbjct: 122 YSFDPVGSY-QRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180
Query: 173 NACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
+A ER+ +G + I+ ++ + V R D
Sbjct: 181 SAAERDVYTGDALRICIVTKEGIREETVSLRKD 213
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 212 bits (541), Expect = 3e-70
Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 20/219 (9%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
NGG+I+ + G++ +A D R + + K+F G ++ + G A D +
Sbjct: 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65
Query: 65 QKIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
++ + Y N +K+S I ++LY +RF PY+V ++ GLD + + + +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDG-KGAVYS 124
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCET-----------------LWEPNLEPDDLFET 166
D +G + GG + + + L +++ +
Sbjct: 125 FDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183
Query: 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
+ + +A ER+ G G + I+ +D V + + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 207 bits (529), Expect = 1e-68
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 4/194 (2%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+I+A+ V + D R + F K+ + ++ L G A D Q + +
Sbjct: 2 TIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ L+ L+ ++ N+ Y+ R +V G D + +G
Sbjct: 62 QLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQV---YGTMGG 117
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ F +GG S +YG + ++P + P++ A+ A R+ SG +
Sbjct: 118 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVT 177
Query: 190 IEQDKVTVRHVKTR 203
I V R +
Sbjct: 178 ITAAGVDHRVILGD 191
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 206 bits (526), Expect = 3e-68
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 2/187 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+ V + K+ V +A +KR + + +KI+Q+ M + G D Q + + I+
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
NLYE++ RK + + + + SN+L R+ PY V+ ++ G+D E I ++D IG
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEG--KSIYSIDPIGG 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ D V G S YG+ E + P + D+ E +A+ +A +R++ SG G V
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179
Query: 190 IEQDKVT 196
I +D+
Sbjct: 180 ITEDEFY 186
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 201 bits (513), Expect = 5e-66
Identities = 11/193 (5%), Positives = 38/193 (19%), Gaps = 5/193 (2%)
Query: 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
+ + + + + + + + + + +
Sbjct: 1 GS----HMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDR 56
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
+ + K + +E + L E I
Sbjct: 57 RITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGE-EISIEM 115
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
+ C + + GG + + + + + + A A +
Sbjct: 116 LAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPV 175
Query: 184 GAVVYIIEQDKVT 196
+ E
Sbjct: 176 VMELLEKEYRDDI 188
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 192 bits (490), Expect = 1e-62
Identities = 37/195 (18%), Positives = 84/195 (43%), Gaps = 7/195 (3%)
Query: 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
M I+ + ++ V +A K + L D+ K Q+ H + G A DT
Sbjct: 1 MD----IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQF 56
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPII 121
+ I+ LY ++E+ ++SP+ + + + L + R PY V ++ G D + +P +
Sbjct: 57 AEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPEL 116
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
+D +G + G + + + + P++ ++ + + + +R +
Sbjct: 117 YQIDYLGTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMD 175
Query: 182 GWGAVVYIIEQDKVT 196
G +V I+++D +
Sbjct: 176 FKGVIVKIVDKDGIR 190
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 186 bits (474), Expect = 2e-59
Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 14/202 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G S+++M N V IA D + +++ VG + VG+ G +D Q + +
Sbjct: 40 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 99
Query: 67 IRFRQNLYELKEN-----RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEP 119
++ + P + ++ ++Y+RR P + +V G+ +
Sbjct: 100 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQ 158
Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----PNLEPDDLFETIAQALVNA 174
+ ++L+G S + G + + + + P E I A+
Sbjct: 159 FLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 217
Query: 175 CERNAVSGWGAVVYIIEQDKVT 196
R+A S + II+++
Sbjct: 218 YYRDARSSRNFSLAIIDKNTGL 239
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 179 bits (457), Expect = 2e-57
Identities = 35/202 (17%), Positives = 75/202 (37%), Gaps = 14/202 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G S+++M N V IA D + +++ VG + VG+ G +D Q + +
Sbjct: 7 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 66
Query: 67 IRFRQNLYELKEN-----RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAEP 119
++ + P + ++ ++Y+RR P + +V G+ +
Sbjct: 67 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQ 125
Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----PNLEPDDLFETIAQALVNA 174
+ ++L+G S + G + + + + P E I A+
Sbjct: 126 FLRYVNLLGVT-YSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184
Query: 175 CERNAVSGWGAVVYIIEQDKVT 196
R+A S + II+++
Sbjct: 185 YYRDARSSRNFSLAIIDKNTGL 206
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 179 bits (456), Expect = 2e-57
Identities = 35/187 (18%), Positives = 79/187 (42%), Gaps = 2/187 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+ +A + + +A D R + +++ ++ + + G A D Q +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ L+EL+E ++S ++SN++Y+ + + M+ G + P I +D G
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE-GPTIYYVDSDGT 120
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
D G YG+ ++ ++ +L +D ++++ A R+A SG +Y
Sbjct: 121 RL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179
Query: 190 IEQDKVT 196
+ +D
Sbjct: 180 VTEDGWI 186
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 179 bits (455), Expect = 2e-56
Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 2/196 (1%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDT 60
I +G + +A + + +A D R + +K+ ++ + + G A D
Sbjct: 68 CKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADC 127
Query: 61 QTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPI 120
Q + + L+EL+E ++S ++SN++Y+ + + M+ G + P
Sbjct: 128 QFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEG-PT 186
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
I +D G D G YG+ ++ ++ +L +D ++++ A R+A
Sbjct: 187 IYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAY 245
Query: 181 SGWGAVVYIIEQDKVT 196
SG +Y + +D
Sbjct: 246 SGGSVNLYHVTEDGWI 261
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 175 bits (447), Expect = 3e-56
Identities = 36/194 (18%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
M ++ + G + V +A D+ + D+ K+F++ + + G A DT
Sbjct: 1 ME----YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPII 121
+ I+ LY+++ ++SP L + R PY V ++ G D P +
Sbjct: 57 AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHE-GPAL 115
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
MD + + + F G + + + + P + + E + + L +R ++
Sbjct: 116 YYMDYLAAL-AKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILN 174
Query: 182 GWGAVVYIIEQDKV 195
V II+++ +
Sbjct: 175 LPTFSVRIIDKNGI 188
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 165 bits (420), Expect = 4e-52
Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 3/192 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+I+A+ V + D R K+ + ++ G A DTQ V + +
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ + ++ N ++ M Y R ++ G DP+ + ++ + G
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEG-GQVYSVPMGGM 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ F +GG S +YG + + + ++ + A AL A ER+ SG +
Sbjct: 120 M-VRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 190 IEQDKVTVRHVK 201
I + V + +
Sbjct: 179 IAESGVERQVLL 190
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 155 bits (393), Expect = 5e-48
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 6/191 (3%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
G SI+A+T K+ V + D R G +A+ K+ +V ++ G A DTQ +
Sbjct: 8 LGASIMAVTFKDGVILGADSRTT-TGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIAD 66
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMD 125
+++ LY + + ++ + YE + +V G D + + + +
Sbjct: 67 IVQYHLELYTSQYGTPSTETAA-SVFKELCYENK-DNLTAGIIVAGYDDKN-KGEVYTIP 123
Query: 126 LIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGA 185
L G V + + G S +YG C+ + N+ ++ + I +L A + + SG
Sbjct: 124 LGGSV-HKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVI 182
Query: 186 VVYIIEQDKVT 196
+ ++ V
Sbjct: 183 RMVVLTAAGVE 193
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 138 bits (349), Expect = 3e-41
Identities = 38/188 (20%), Positives = 81/188 (43%), Gaps = 5/188 (2%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
+ +A ++ V +A D R G +A +K+ ++ ++ + G A D + +
Sbjct: 2 TTLAFKFRHGVIVAADSRAT-AGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
+ +YEL+ ++S +++NM+Y+ + + M+ G D P + +D G
Sbjct: 61 RQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEG 118
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
G S YG+ + + +LE + ++ +A+ A R+A SG +Y
Sbjct: 119 NR-ISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLY 177
Query: 189 IIEQDKVT 196
+ +D
Sbjct: 178 HVREDGWI 185
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 118 bits (299), Expect = 1e-33
Identities = 47/199 (23%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Query: 1 MSIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATD 59
M+ G + V +T K+ V +A ++R + N +K+FQ+ ++ + + GL D
Sbjct: 1 MNQTLETGTTTVGITLKDAVIMATERRVT-MENFIMHKNGKKLFQIDTYTGMTIAGLVGD 59
Query: 60 TQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEP 119
Q + + ++ LY L+ M + + ++SNML + ++ PY V+ +V G+D P
Sbjct: 60 AQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT---AP 116
Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNA 179
+ ++D G + G S +YG+ E+ + + D+ + + +A+ A +R++
Sbjct: 117 HVFSIDAAGGS-VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDS 175
Query: 180 VSGWGAVVYIIEQDKVTVR 198
SG V +I + V+
Sbjct: 176 ASGGMIDVAVITRKDGYVQ 194
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 115 bits (290), Expect = 2e-32
Identities = 38/201 (18%), Positives = 80/201 (39%), Gaps = 12/201 (5%)
Query: 3 IMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQ 61
++T G S++ + + V IA D G G+ N +I +V + +G G D Q
Sbjct: 5 MVT--GTSVLGVKFEGGVVIAADML-GSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61
Query: 62 TVYQKIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERR--FGPYFVEPMVVGLDPETAE 118
+ Q + EL + SP+ + + ++ +Y RR P + ++ G E
Sbjct: 62 YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADG--E 119
Query: 119 PIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETL--WEPNLEPDDLFETIAQALVNACE 176
+G +D++G V + + G + + + +P L + + + + +
Sbjct: 120 SFLGYVDMLG-VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178
Query: 177 RNAVSGWGAVVYIIEQDKVTV 197
R+A S + + V +
Sbjct: 179 RDARSYNRFQTATVTEKGVEI 199
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 113 bits (283), Expect = 9e-31
Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 10/200 (5%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G +IVA+ V +A D+R QG ++ + +K++ + G+ G A +
Sbjct: 57 GTTIVALKYPGGVVMAGDRR-STQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARL 115
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE---RRFGPYFVEPMVVGLDPETAEPIIG- 122
YE E ++ + ++ M+ P++ G D ++P
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175
Query: 123 ----NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERN 178
G + + G S + L+ + D +AL +A + +
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDD 235
Query: 179 AVSGWGAVVYIIEQDKVTVR 198
+ +G +V I V +
Sbjct: 236 SATGGPDLVRGIFPTAVIID 255
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 112 bits (281), Expect = 1e-30
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 6/190 (3%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G +IV + N V IA D R QG +AD N K+ ++ ++ G A DT+ V Q
Sbjct: 29 GTTIVGVKFNNGVVIAADTRS-TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQL 87
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
I L+ L +R+ L M+ L++ + G +V G+DP + ++
Sbjct: 88 IGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHA 144
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
G ++ G S + E+ W+ +L ++ + + A+ + SG
Sbjct: 145 HGST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 203
Query: 187 VYIIEQDKVT 196
V ++E K
Sbjct: 204 VCVMEIGKDA 213
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 108 bits (272), Expect = 1e-29
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 6/188 (3%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
+I + K+ + + D R +G +AD N KI + ++Y G A DT Q I
Sbjct: 2 TIAGVVYKDGIVLGADTR-ATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
L+ L R M+ ML+ R G ++ G+D P + ++ G
Sbjct: 61 SNLELHSLSTGRLPRVVTANRMLKQMLFRYR-GYIGAALVLGGVDVT--GPHLYSIYPHG 117
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
+V G S + E + P++E ++ +++A+ + SG +
Sbjct: 118 ST-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLC 176
Query: 189 IIEQDKVT 196
+I ++K+
Sbjct: 177 VISKNKLD 184
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 108 bits (271), Expect = 1e-29
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 6/188 (3%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
+IV + N V IA D R QG +AD N K+ ++ ++ G A DT+ V Q I
Sbjct: 2 TIVGVKFNNGVVIAADTRS-TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
L+ L +R+ L M+ L++ + G +V G+DP + ++ G
Sbjct: 61 SNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPT--GSHLFSIHAHG 117
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
++ G S + E+ W+ +L ++ + + A+ + SG V
Sbjct: 118 ST-DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVC 176
Query: 189 IIEQDKVT 196
++E K
Sbjct: 177 VMEIGKDA 184
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 103 bits (257), Expect = 5e-27
Identities = 38/200 (19%), Positives = 80/200 (40%), Gaps = 10/200 (5%)
Query: 8 GGSIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G +IVA+T K V +A D+R QG +A + + ++ + G+ G A + +
Sbjct: 65 GTTIVALTYKGGVLLAGDRR-ATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRL 123
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYF---VEPMVVGLDP----ETAEP 119
YE E ++ +++M+ V P++VG D E+
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 120 IIGNMDLIGCVNQPS-DFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERN 178
I + D++G + + G S + ++ P+ + + ++L +A + +
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDD 243
Query: 179 AVSGWGAVVYIIEQDKVTVR 198
+ +G + I VT+
Sbjct: 244 SATGGPDLTRGIYPTAVTIT 263
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 98.8 bits (246), Expect = 8e-26
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 10/198 (5%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
+IVA+T K V +A D+R QG +A + +K++ + G+ G A + +
Sbjct: 2 TIVALTYKGGVLLAGDRRA-TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYF---VEPMVVGLDP----ETAEPII 121
YE E ++ +++M+ V P++VG D E+ I
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120
Query: 122 GNMDLIGCV-NQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
+ D++G + + + G S + ++ P+ + + ++L +A + ++
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 180
Query: 181 SGWGAVVYIIEQDKVTVR 198
+G + I VT+
Sbjct: 181 TGGPDLTRGIYPTAVTIT 198
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 96.6 bits (241), Expect = 6e-25
Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 6/190 (3%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALAD-NFQKIFQVGSHMYVGLPGLATDTQTVYQKIR 68
+I + ++ V + D R + +AD + +KI + +Y G+A DT+ +
Sbjct: 2 TIAGLVFRDGVILGADTRA-TNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
+ L+ L R+ + ++ L+ + G +V G+D P + + G
Sbjct: 61 SKMELHALSTGREPRVATVTRILRQTLFRYQ-GHVGASLVVGGVDLN--GPQLYEVHPHG 117
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVY 188
+ F G + E ++PN+ + E + +A+ + SG
Sbjct: 118 SYS-RLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDAC 176
Query: 189 IIEQDKVTVR 198
+I ++
Sbjct: 177 VITAGGAKLQ 186
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 83.9 bits (207), Expect = 6e-20
Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 14/182 (7%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G S+V +T ++ V + + K+ ++ + G + + + +
Sbjct: 26 RGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77
Query: 67 IRFRQNLYELKENRK-MSPKVLLAMISNML---YERRFGPYFVEPMV--VGLDPETAEPI 120
++ +R+ ++ + L + L + + PY VE V VG P
Sbjct: 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 137
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
+ + G + FVV G ++ + + +L+ + AL
Sbjct: 138 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 197
Query: 181 SG 182
Sbjct: 198 KR 199
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 70.7 bits (173), Expect = 3e-15
Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 14/182 (7%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
S+VA+ V + + + QKI ++ + G + + +
Sbjct: 26 RAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRG 77
Query: 67 IRFRQNLYELKENRK-MSPKVLLAMISNML---YERRFGPYFVEPMV--VGLDPETAEPI 120
+ +R+ ++ + L + + L + + PY VE V V ET P
Sbjct: 78 GIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPE 137
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
+ + G + FVV G ++ + + + N D AL +
Sbjct: 138 LYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSG 197
Query: 181 SG 182
Sbjct: 198 GD 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 4e-09
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 107 PM--VVGLDPETAEPIIG--NMDL-------IGCVNQPSDFVVGGPCSDQLYGMCETL 153
PM + L E + + N L I VN + VV GP LYG+ TL
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTL 393
Score = 28.1 bits (62), Expect = 3.0
Identities = 31/197 (15%), Positives = 53/197 (26%), Gaps = 80/197 (40%)
Query: 30 IQGTALADNFQKIFQVGSHMYVGLP----GLATDTQTVYQK---IRFRQNLYELKENRKM 82
+ L + F KI LP G A D + +F + L E K+
Sbjct: 28 FIASQLQEQFNKI----------LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 83 SP--KVLLAMISNMLYERRFGPYFVEPM--------VVGLDPETAEPIIGNMDLI----- 127
+VL ++ +E + + L E ++ +LI
Sbjct: 78 GQFDQVLNLCLTE--FENCY-------LEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 128 --GCVNQPSD------------------FVV-GGPCSDQLYGMCETLWE----------P 156
+P D + GG Q G + +E
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG----Q--GNTDDYFEELRDLYQTYHV 182
Query: 157 NLEPDDLFETIAQALVN 173
+ DL + A+ L
Sbjct: 183 LVG--DLIKFSAETLSE 197
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 46.8 bits (112), Expect = 8e-07
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G V + + KR L+ +KI + HM + L GLA D + +
Sbjct: 30 QGSVTVGLRSNTHAVLVALKR---NADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+R + N L NRK++ + ++ + Y R PY V +++G D
Sbjct: 87 LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGR--PYGVGLLIIGYDKS 139
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 46.9 bits (112), Expect = 1e-06
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + K + KR + LA + +KI V +H+ + + GL D + +
Sbjct: 31 QGSATVGLKSKTHAVLVALKR---AQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 87
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+R +R + L+++I + Y RR PY V ++ G D
Sbjct: 88 MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRR--PYGVGLLIAGYDDM 140
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 44.6 bits (106), Expect = 5e-06
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALAD---NFQKIFQVGSHMYVGLPGLATDTQTV 63
G V + GKNCV + C++R L D K+ ++ SH+ + GL D++ +
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRS---TLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRIL 83
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPETA 117
+K R + L ++ + L ++ + R P+ V ++ G DP
Sbjct: 84 IEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVR--PFGVSTLIAGFDPRDD 141
Query: 118 EP 119
EP
Sbjct: 142 EP 143
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 44.6 bits (106), Expect = 6e-06
Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 13/121 (10%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
G + + + K V + +KR L + KI ++ H+ + GL D +++ +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKR--ATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIE 82
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNM-----LYERRFGPYFVEP-----MVVGLDPE 115
R + L + ++ + L + ++ P ++ G D +
Sbjct: 83 HARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDAD 142
Query: 116 T 116
Sbjct: 143 D 143
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 44.6 bits (106), Expect = 6e-06
Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNF--QKIFQVGSHMYVGLPGLATDTQTVY 64
+ G+ + + + V +A ++R L + F +KI+++ M + G+ +D +
Sbjct: 30 HAGTCLGILANDGVLLAAERR--NIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLT 87
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
++R Y L+ + + L+ + ++ +R P+ V + +G D
Sbjct: 88 NELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--PFGVSLLYIGWDKHY 143
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 44.3 bits (105), Expect = 8e-06
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 11/117 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
N + + + K+ V +K + + ++F V H+ + + GL D +++
Sbjct: 32 NSSTAIGIRCKDGVVFGVEKL--VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
R + + + K L ++ + R P+ M+
Sbjct: 90 IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVR--PFGCSFMLGSYSVND 144
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
G + + + N V IA +K+ K+ + + G+ D + +
Sbjct: 30 QGVTSLGIKATNGVVIATEKK--SSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVD 87
Query: 66 KIRFR-QNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
K R Y+ K+L++ ++ ++ R P+ V ++ G D
Sbjct: 88 KSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVR--PFGVSLLIAGHDEFN 143
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 43.4 bits (103), Expect = 1e-05
Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
G + V + G++ V + +K+ +KI + ++ + GL D + V
Sbjct: 28 KGSTAVGVRGRDIVVLGVEKK--SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVIN 85
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+ R + L ++ + + I+++ RR P+ + ++VG D +
Sbjct: 86 RARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGISALIVGFDFD 139
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 42.7 bits (100), Expect = 2e-05
Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 4/122 (3%)
Query: 11 IVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIRF 69
IV++ V + D + + T + N +K+ ++ + + G G D T+++
Sbjct: 3 IVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFER 62
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFV---EPMVVGLDPETAEPIIGNMDL 126
+ +++ + L + E +++ + +P +
Sbjct: 63 KLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILA 122
Query: 127 IG 128
IG
Sbjct: 123 IG 124
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 42.2 bits (100), Expect = 3e-05
Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
G V + N V +A +K+ + + K+ + H+ + G+ D + +
Sbjct: 30 GGAPSVGIKAANGVVLATEKK--QKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVH 87
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+ R Y L + L+ +++++ R P+ V ++ G +
Sbjct: 88 RARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVR--PFGVSLLICGWNEG 141
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 42.2 bits (100), Expect = 4e-05
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 12/118 (10%)
Query: 7 NGGS-IVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVY 64
+A+ GK+C + K+ + L IF + + + + G D +
Sbjct: 28 QTNINSLAVRGKDCTVVISQKK--VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAA 85
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
+ + + K M VL ++N+ R P V V +D E
Sbjct: 86 LRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMR--PLGVILTFVSVDEEL 141
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 41.9 bits (99), Expect = 4e-05
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
G + + + K V + DKR + L D +KI+++ H+ GL D + +
Sbjct: 33 RGATAIGIKCKEGVILIADKR--VGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLID 90
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLD 113
+ R + L + ++ K L I + R P+ V ++ G++
Sbjct: 91 RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVR--PFGVSLLIAGVN 142
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 41.9 bits (99), Expect = 4e-05
Identities = 18/119 (15%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALAD---NFQKIFQVGSHMYVGLPGLATDTQTV 63
+ G+ + + + + +A +++ + L + + +K++++ + V + GL D + +
Sbjct: 30 HAGTAIGIMASDGIVLAAERK---VTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEIL 86
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
R Y N + ++L+ +S++ R P+ V + G D
Sbjct: 87 INTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLR--PFGVSFIYAGYDDRY 143
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 41.9 bits (99), Expect = 4e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
NG + + + + V A +K I L KI V H+ GL D + +
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKL--ITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVN 86
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+ R ++ + + + R P+ V + G+D
Sbjct: 87 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR--PFGVSTIFGGVDKN 140
Score = 41.9 bits (99), Expect = 5e-05
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNF-QKIFQVGSHMYVGLPGLATDTQTVYQ 65
G + + + K+ V +A D+R I + +KIFQ+ H+ GL D + +
Sbjct: 37 RGTTAIGIACKDGVVLAVDRR--ITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLID 94
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+ R +Y L ++S ++L I ++ R P+ V ++ G+D
Sbjct: 95 RARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVR--PFGVSLLIAGIDKN 148
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 41.4 bits (98), Expect = 7e-05
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 7 NGGS-IVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVY 64
GG VA+ GK+C I K+ + L + +F++ ++ + G+ D+++
Sbjct: 34 QGGLTSVAVRGKDCAVIVTQKK--VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQV 91
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPET 116
Q+ R+ ++ K ++ +L I+++ E R P +++G+D E
Sbjct: 92 QRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMR--PLGCCMILIGIDEEQ 147
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 40.7 bits (95), Expect = 7e-05
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 18/162 (11%)
Query: 11 IVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIRF 69
I+ + + D + T L N +K+ ++G + G G D T++ +
Sbjct: 3 ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ + + + + +R +V D E I GN +
Sbjct: 63 KLREWGGNLTKAAV-----ELAKDWRTDRVLRRLEALLLVA--DKENIFIISGNGE---- 111
Query: 130 VNQPSDFV--VGGPCSDQLYGMCETLWEPNLEPDDLFETIAQ 169
V QP D +G L L +L I +
Sbjct: 112 VIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA----REIVE 149
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 41.1 bits (97), Expect = 7e-05
Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
G + + M N V + DK+ ++ + ++ +KI + ++ GL D + +
Sbjct: 33 KGSTALGMKFANGVLLISDKK--VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVD 90
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
R ++ ++ + L+ +++ + R PY V + G+D
Sbjct: 91 FARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVR--PYGVSLIFAGIDQI 144
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 41.2 bits (97), Expect = 8e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTAL-ADNFQKIFQVGSHMYVGLPGLATDTQTVYQ 65
NG + + + + V A +K I L KI V H+ GL D + +
Sbjct: 33 NGTTSIGIKCNDGVVFAVEKL--ITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVN 90
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNML------YERRFGPYFVEPMVVGLDPE 115
+ R ++ + + + R P+ V + G+D
Sbjct: 91 RGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVR--PFGVSTIFGGVDKN 144
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 39.5 bits (93), Expect = 3e-04
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQ-KIFQVGSHMYVGLPGLATDTQTVYQ 65
G + + + V +A +KR I + + KI ++ +H+ + GL D +T+
Sbjct: 33 LGSTAIGIQTSEGVCLAVEKR--ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLID 90
Query: 66 KIRFRQNLYELKENRKMSPKVLLAMISNM-----LYERRFG----PYFVEPMVVGLDPE 115
K R + N M+ + + +SN+ + G P+ V + G+D +
Sbjct: 91 KARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK 149
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 38.1 bits (88), Expect = 7e-04
Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 16/168 (9%)
Query: 11 IVAMTGKNCVAIACDKR--FGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKI 67
I A+ K A++ D + FG Q + +K+ ++ + + G G D T+++K
Sbjct: 8 IFAVQHKGRSAMSGDGQVTFG-QAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKF 66
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
+ Y R ++ S+ + + M++ ++ +T + G +
Sbjct: 67 EAKLEEYNGNLKRAA-VELAKEWRSDKVLRKLEA------MLIVMNQDTLLLVSGTGE-- 117
Query: 128 GCVNQPSDFVVG-GPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNA 174
V +P D ++ G + L + E E AL A
Sbjct: 118 --VIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.057
Identities = 22/180 (12%), Positives = 56/180 (31%), Gaps = 33/180 (18%)
Query: 40 QKIFQVGSHMYV---GLPG-----LATDT-QTVYQKIRFRQNLYELKENRKMSPKVLLAM 90
Q + ++ V G+ G +A D + + + ++ L SP+ +L M
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 91 ISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMC 150
+ +LY + P + + + I + I + + + Y C
Sbjct: 202 LQKLLY--QIDPNWTSR------SDHSSNIKLRIHSI--QAELRRLL-----KSKPYENC 246
Query: 151 ----ETLWEPNLEPDDLFETIAQALV---NACERNAVSGWGAVVYIIEQDKVTVRHVKTR 203
+ + F + L+ + +S ++ +T+ + +
Sbjct: 247 LLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology
domains., structural genomics, PSI, protein structure
initiative; 1.70A {Mycobacterium tuberculosis} SCOP:
b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Length = 366
Score = 29.5 bits (67), Expect = 0.66
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 155 EPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ + ++L ETI AL+ A A + I
Sbjct: 33 DRGISVNELLETIKSALLTAYRHTQGHQTDARIEI 67
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 28.7 bits (64), Expect = 1.6
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 108 MV-VGLDPETAEPIIGNMDLIGCVNQPSDFVVGGP 141
M VGL E + + C N + GP
Sbjct: 620 MAAVGLSWEECKQRCPPGIVPACHNSKDTVTISGP 654
>1hh2_P NUSA, N utilization substance protein A; transcription regulation,
termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5
d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Length = 344
Score = 27.1 bits (61), Expect = 3.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 155 EPNLEPDDLFETIAQALVNACERN 178
E + +++ + +ALV+A +N
Sbjct: 15 EKGISKEEVIPILEKALVSAYRKN 38
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 26.7 bits (59), Expect = 5.8
Identities = 5/40 (12%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 160 PDDLFETIAQALVNACERN----AVSGWGAVVYIIEQDKV 195
D + L + G GA + + ++
Sbjct: 50 APDTGRWLLDVLSRYADHPVTTIVPVGHGAGIAALTDGRL 89
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Length = 129
Score = 25.9 bits (58), Expect = 5.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 155 EPNLEPDDLFETIAQALVNACERN 178
E L + +FE + AL A ++
Sbjct: 15 EKALPREKIFEALESALATATKKK 38
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Length = 387
Score = 26.6 bits (58), Expect = 6.2
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 71 QNLYELKENR--KMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
+ L + + LL +I N+LY R P V P + +A +
Sbjct: 207 KVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDAFDIIDLSAGGQL 259
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 26.4 bits (58), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 93 NMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
NM+++ GP ++ L PETA+ I N
Sbjct: 166 NMMFQDLRGPRGGRGLLAYLRPETAQGIFVN 196
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 26.5 bits (58), Expect = 7.9
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 27 RFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRFRQNLYELKENRK 81
+ + + Q + ++G+H PG TD Y++ R + LKE K
Sbjct: 664 MITEESRPVLEFLQMLCEIGAH----YPGFETDIHGAYRQADGRYTVKVLKEESK 714
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,189,991
Number of extensions: 186129
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 62
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)