RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15275
(205 letters)
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 169 bits (428), Expect = 6e-54
Identities = 123/204 (60%), Positives = 167/204 (81%)
Query: 2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
SIM+YNGG+++AM GKNCVAIA D+RFGIQ + +FQKIF +G +Y+GL GLATD Q
Sbjct: 1 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQ 60
Query: 62 TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
TV Q+++FR NLYELKE R++ P L++M++N+LYE+RFGPY+ EP++ GLDP+T +P I
Sbjct: 61 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFI 120
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
++DLIGC DFVV G C++Q+YGMCE+LWEPN++PD LFETI+QA++NA +R+AVS
Sbjct: 121 CSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVS 180
Query: 182 GWGAVVYIIEQDKVTVRHVKTRMD 205
G G +V+IIE+DK+T R +K RMD
Sbjct: 181 GMGVIVHIIEKDKITTRTLKARMD 204
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 154 bits (391), Expect = 2e-48
Identities = 111/201 (55%), Positives = 156/201 (77%), Gaps = 1/201 (0%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
+ NGG +VAMTGK+CVAIACD R G Q +++ F+KIF G H+++G+ GLATD T+
Sbjct: 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLN 63
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNM 124
+ R++ NLY+LKE R + P+ ++S+ LYERRFGPYFV P+V G++ ++ +P I
Sbjct: 64 EMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 125 DLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWG 184
DLIGC+++ DF+V G SDQL+GMCE+L+EPNLEP+DLFETI+QAL+NA +R+A+SGWG
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 183
Query: 185 AVVYIIEQDKVTVRHVKTRMD 205
AVVYII++D+V R++K R D
Sbjct: 184 AVVYIIKKDEVVKRYLKMRQD 204
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 134 bits (337), Expect = 4e-40
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 11/213 (5%)
Query: 2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQ 61
S +NGG+I+A+ G++ +A D R + + K +++ +G G D
Sbjct: 3 SPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCL 62
Query: 62 TVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPII 121
T+ + I R +Y+ N+ M+ + AM+S +LY RRF PY+V ++ GLD E + +
Sbjct: 63 TLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEG-KGAV 121
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCE---------TLWEPNLEPDDLFETIAQALV 172
+ D Q F GG S L + + + L D + +
Sbjct: 122 YSFD-PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFI 180
Query: 173 NACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
+A ER+ +G + I+ ++ + V R D
Sbjct: 181 SAAERDVYTGDALRICIVTKEGIREETVSLRKD 213
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 133 bits (335), Expect = 9e-40
Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 20/219 (9%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVY 64
NGG+I+ + G++ +A D R + + K+F G ++ + G A D +
Sbjct: 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65
Query: 65 QKIRFRQNLYELKEN-RKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGN 123
++ + Y N +K+S I ++LY +RF PY+V ++ GLD E + + +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD-EDGKGAVYS 124
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----------------PNLEPDDLFET 166
D +G + GG + + + L +++ +
Sbjct: 125 FDPVGSY-EREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183
Query: 167 IAQALVNACERNAVSGWGAVVYIIEQDKVTVRHVKTRMD 205
+ + +A ER+ G G + I+ +D V + + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 127 bits (320), Expect = 1e-37
Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 3/192 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+I+A+ V + D R K+ + ++ G A DTQ V + +
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ + ++ N ++ M Y R ++ G DP+ + ++ + G
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMCY-RYREDLMAGIIIAGWDPQEG-GQVYSVPMGGM 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ + F +GG S +YG + + + ++ + A AL A ER+ SG +
Sbjct: 120 MVRQ-SFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 190 IEQDKVTVRHVK 201
I + V + +
Sbjct: 179 IAESGVERQVLL 190
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 124 bits (313), Expect = 1e-36
Identities = 36/189 (19%), Positives = 84/189 (44%), Gaps = 3/189 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
I+ + ++ V +A K + L D+ K Q+ H + G A DT + I+
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGNMDLI 127
LY ++E+ ++SP+ + + + L + R PY V ++ G D + +P + +D +
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 128 GCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVV 187
G + + G + + + + P++ ++ + + + +R + G +V
Sbjct: 123 GTKVEL-PYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIV 181
Query: 188 YIIEQDKVT 196
I+++D +
Sbjct: 182 KIVDKDGIR 190
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 119 bits (298), Expect = 2e-34
Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 2/188 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+ V + K+ V +A +KR + + +KI+Q+ M + G D Q + + I+
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
NLYE++ RK + + + + SN+L R+ PY V+ ++ G+D E I ++D IG
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS--IYSIDPIGG 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ D V G S YG+ E + P + D+ E +A+ +A +R++ SG G V
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179
Query: 190 IEQDKVTV 197
I +D+
Sbjct: 180 ITEDEFYQ 187
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 118 bits (296), Expect = 4e-34
Identities = 38/190 (20%), Positives = 78/190 (41%), Gaps = 4/190 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G SI+A+T K+ V + D R K+ +V ++ G A DTQ +
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDL 126
+++ LY + + ++ + YE + +V G D + + + + L
Sbjct: 68 VQYHLELYTSQYGTPSTETA-ASVFKELCYENK-DNLTAGIIVAGYDDKN-KGEVYTIPL 124
Query: 127 IGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAV 186
G V++ + + G S +YG C+ + N+ ++ + I +L A + + SG
Sbjct: 125 GGSVHKL-PYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183
Query: 187 VYIIEQDKVT 196
+ ++ V
Sbjct: 184 MVVLTAAGVE 193
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 118 bits (296), Expect = 5e-34
Identities = 35/188 (18%), Positives = 80/188 (42%), Gaps = 2/188 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+ +A + + +A D R + +++ ++ + + G A D Q +
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ L+EL+E ++S ++SN++Y+ + + M+ G + P I +D G
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKE-GPTIYYVDSDGT 120
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ D G YG+ ++ ++ +L +D ++++ A R+A SG +Y
Sbjct: 121 RLK-GDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179
Query: 190 IEQDKVTV 197
+ +D
Sbjct: 180 VTEDGWIY 187
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 116 bits (291), Expect = 2e-33
Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 3/187 (1%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+ +A ++ V +A D R + +K+ ++ ++ + G A D + +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ +YEL+ ++S +++NM+Y+ + + M+ G D P + +D G
Sbjct: 62 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKR--GPGLYYVDSEGN 119
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ F VG S YG+ + + +LE + ++ +A+ A R+A SG +Y
Sbjct: 120 RISGATFSVGS-GSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178
Query: 190 IEQDKVT 196
+ +D
Sbjct: 179 VREDGWI 185
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 111 bits (277), Expect = 3e-31
Identities = 44/181 (24%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+ V +T K+ V +A ++R ++ + N +K+FQ+ ++ + + GL D Q + + ++
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
LY L+ M + + ++SNML + ++ PY V+ +V G+D P + ++D G
Sbjct: 62 ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT---APHVFSIDAAGG 118
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ G S +YG+ E+ + + D+ + + +A+ A +R++ SG V +
Sbjct: 119 S-VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAV 177
Query: 190 I 190
I
Sbjct: 178 I 178
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 110 bits (276), Expect = 4e-31
Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 8/195 (4%)
Query: 4 MTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTV 63
M Y ++ + G + V +A D+ + D+ K+F++ + + G A DT
Sbjct: 1 MEY----LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQF 56
Query: 64 YQKIRFRQNLYELKENRKMSPKVLLAMISNML--YERRFGPYFVEPMVVGLDPETAEPII 121
+ I+ LY+++ ++SP L R PY V ++ G D +
Sbjct: 57 AEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALY 116
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
L P G + + + + P + + E + + L +R ++
Sbjct: 117 YMDYLAALAKAPFAAHGYG--AFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILN 174
Query: 182 GWGAVVYIIEQDKVT 196
V II+++ +
Sbjct: 175 LPTFSVRIIDKNGIH 189
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 111 bits (278), Expect = 5e-31
Identities = 33/200 (16%), Positives = 74/200 (37%), Gaps = 14/200 (7%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G S+++M N V IA D + +++ VG + VG+ G +D Q + +
Sbjct: 7 TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERL 66
Query: 67 IRFRQNLYELKENR-----KMSPKVLLAMISNMLYER--RFGPYFVEPMVVGLDPETAEP 119
++ + P + ++ ++Y+R + P + +V G+ +
Sbjct: 67 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNG-DQ 125
Query: 120 IIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWE-----PNLEPDDLFETIAQALVNA 174
+ ++ + V S + G + + + + P E I A+
Sbjct: 126 FLRYVN-LLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184
Query: 175 CERNAVSGWGAVVYIIEQDK 194
R+A S + II+++
Sbjct: 185 YYRDARSSRNFSLAIIDKNT 204
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 104 bits (259), Expect = 2e-28
Identities = 32/196 (16%), Positives = 71/196 (36%), Gaps = 8/196 (4%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G S++ + + V IA D A N +I +V + +G G D Q + Q
Sbjct: 7 TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQV 66
Query: 67 IRFRQNLYELKE-NRKMSPKVLLAMISNMLYE--RRFGPYFVEPMVVGLDPETAEPIIGN 123
+ EL SP+ + + ++ +Y + P + ++ G +G
Sbjct: 67 LGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE--SFLGY 124
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETL--WEPNLEPDDLFETIAQALVNACERNAVS 181
+D++G + + G + + + +P L + + + + + R+A S
Sbjct: 125 VDMLGVA-YEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARS 183
Query: 182 GWGAVVYIIEQDKVTV 197
+ + V +
Sbjct: 184 YNRFQTATVTEKGVEI 199
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 103 bits (258), Expect = 3e-28
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 4/185 (2%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+IV + N V IA D R N K+ ++ ++ G A DT+ V Q I
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
L+ L +R+ L M+ L+ + G +V G+DP + ++ G
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLF-KYQGHIGAYLIVAGVDPT--GSHLFSIHAHGS 118
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+ ++ G S + E+ W+ +L ++ + + A+ + SG V +
Sbjct: 119 TDVG-YYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177
Query: 190 IEQDK 194
+E K
Sbjct: 178 MEIGK 182
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 103 bits (257), Expect = 9e-28
Identities = 24/203 (11%), Positives = 71/203 (34%), Gaps = 6/203 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
+ G+ + + + + +A +++ + +K++++ + V + GL D + +
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIG 122
R Y N + ++L+ +S++ P+ V + G D +
Sbjct: 90 ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRY-GYQLY 148
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
+ G + G + + + ++ +++ DD E + L + +A++
Sbjct: 149 TSNPSGN-YTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTY 207
Query: 183 WGAVVYIIEQDKVTVRHVKTRMD 205
I + +
Sbjct: 208 DRLEFATIRKGANDGEVYQKIFK 230
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 102 bits (254), Expect = 1e-27
Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 8/197 (4%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+IVA+T K V +A D+R + + +K++ + G+ G A + +
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRF--------GPYFVEPMVVGLDPETAEPII 121
YE E ++ +++M+ P V + D A I+
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
+ G + + + G S + ++ P+ + + ++L +A + ++ +
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181
Query: 182 GWGAVVYIIEQDKVTVR 198
G + I VT+
Sbjct: 182 GGPDLTRGIYPTAVTIT 198
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 101 bits (253), Expect = 1e-27
Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 4/188 (2%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+I + K+ + + D R N KI + ++Y G A DT Q I
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
L+ L R M+ M R G ++ G+D P + ++ G
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLKQM-LFRYRGYIGAALVLGGVDVT--GPHLYSIYPHGS 118
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGWGAVVYI 189
+V G S + E + P++E ++ +++A+ + SG + +
Sbjct: 119 T-DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177
Query: 190 IEQDKVTV 197
I ++K+
Sbjct: 178 ISKNKLDF 185
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 96.6 bits (240), Expect = 2e-25
Identities = 32/197 (16%), Positives = 72/197 (36%), Gaps = 14/197 (7%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + + + V +A +KR + +KI ++ +H+ + GL D +T+ K
Sbjct: 26 LGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE---------RRFGPYFVEPMVVGLDPETA 117
R + N M+ + + +SN+ + P+ V + G+D +
Sbjct: 85 ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-- 142
Query: 118 EPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACER 177
P + +MD G D G S+ + L+ ++ + ++ L E
Sbjct: 143 GPQLFHMDPSGT-FVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE 201
Query: 178 NAVSGWGAVVYIIEQDK 194
+ + ++ +
Sbjct: 202 KL-NATNIELATVQPGQ 217
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 94.0 bits (233), Expect = 2e-24
Identities = 29/201 (14%), Positives = 69/201 (34%), Gaps = 13/201 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + + + K V + +KR +D+ +KI ++ H+ + GL D +++ +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKRA-TSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE----------RRFGPYFVEPMVVGLDPET 116
R + L + ++ + L + ++ P+ V ++ G D +
Sbjct: 84 ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD 143
Query: 117 AEPIIGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACE 176
+ + + G + G S+ W +L + + + L E
Sbjct: 144 -GYQLFHAEPSGT-FYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVME 201
Query: 177 RNAVSGWGAVVYIIEQDKVTV 197
+ I +QD +
Sbjct: 202 EKLDENNAQLSCITKQDGFKI 222
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 93.2 bits (231), Expect = 4e-24
Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 14/182 (7%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G S+V +T ++ V + + K+ ++ + G + + + +
Sbjct: 18 RGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRA 69
Query: 67 IRFRQNLYELKENRKMSPK----VLLAMISNMLYERRFGPYFVEPMVVGLDPETA--EPI 120
++ +R+ A ++ + PY VE V + + P
Sbjct: 70 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQ 129
Query: 121 IGNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAV 180
+ + G + FVV G ++ + + +L+ + AL
Sbjct: 130 LYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGE 189
Query: 181 SG 182
Sbjct: 190 KR 191
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 93.6 bits (232), Expect = 4e-24
Identities = 23/195 (11%), Positives = 67/195 (34%), Gaps = 5/195 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
+ G+ + + + V +A ++R + +KI+++ M + G+ +D + +
Sbjct: 29 HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNE 88
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRF----GPYFVEPMVVGLDPETAEPIIG 122
+R Y L+ + + L+ + ++ P+ V + +G D +
Sbjct: 89 LRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHY-GFQLY 147
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
D G +G + + + + E + + L + + +S
Sbjct: 148 QSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSA 207
Query: 183 WGAVVYIIEQDKVTV 197
+ + ++
Sbjct: 208 EKVEIATLTRENGKT 222
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 92.8 bits (230), Expect = 5e-24
Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 12/195 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G V + + KR L+ +KI + HM + L GLA D + +
Sbjct: 30 QGSVTVGLRSNTHAVLVALKR---NADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNY 86
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFG----PYFVEPMVVGLDPETAEPIIG 122
+R + N L NRK++ + ++ + + PY V +++G D +
Sbjct: 87 LRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG--AHLL 144
Query: 123 NMDLIGCVNQPSDFVVGG---PCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNA 179
G V + +G L +T + + PD+L + +A+ + +
Sbjct: 145 EFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDES 204
Query: 180 VSGWGAVVYIIEQDK 194
++ + I+ +D
Sbjct: 205 LTVDNLSIAIVGKDT 219
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 91.7 bits (227), Expect = 1e-23
Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 8/195 (4%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + + M N V + DK+ ++ +KI + ++ GL D + +
Sbjct: 21 KGSTALGMKFANGVLLISDKKV-RSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
R ++ ++ + L+ +++ + + PY V + G+D P +
Sbjct: 80 ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLF 137
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
+ D G +N+ G D + E ++ NL + +AL ++ E
Sbjct: 138 DCDPAGTINE-YKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELK 196
Query: 183 WGAVVYIIEQDKVTV 197
+ I +K +
Sbjct: 197 APEIASITVGNKYRI 211
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 90.9 bits (225), Expect = 4e-23
Identities = 22/198 (11%), Positives = 61/198 (30%), Gaps = 7/198 (3%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
N + + + K+ V +K + + +++F V H+ + + GL D +++
Sbjct: 32 NSSTAIGIRCKDGVVFGVEKLV-LSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADI 90
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRFG----PYFVEPMVVGLDPETAEPIIG 122
R + + + K L ++ ++ P+ M+ +
Sbjct: 91 AREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVND-GAQLY 149
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
+D G G E L + D+ + +A+ + +
Sbjct: 150 MIDPSGVS-YGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA 208
Query: 183 WGAVVYIIEQDKVTVRHV 200
+ + + + +
Sbjct: 209 FELELSWVGELTNGRHEI 226
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 90.5 bits (224), Expect = 4e-23
Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 5/192 (2%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G V + GKNCV + C++R ++ K+ ++ SH+ + GL D++ + +K
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
R + L ++ + L ++ + P+ V ++ G DP EP +
Sbjct: 87 ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLY 146
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
+ G G S + E ++ P + E + + + E
Sbjct: 147 QTEPSGIY-SSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGA 205
Query: 183 WGAVVYIIEQDK 194
+ +++ D
Sbjct: 206 KNIEITVVKPDS 217
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 89.4 bits (221), Expect = 9e-23
Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 7/194 (3%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G V + N V +A +K+ + K+ + H+ + G+ D + + +
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRF---GPYFVEPMVVGLDPETAEPIIGN 123
R Y L + L+ +++++ E F +++ E + +
Sbjct: 89 ARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQS 148
Query: 124 MDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSGW 183
G E + +LE +D T L + E ++
Sbjct: 149 DPSGAYF--AWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MTED 205
Query: 184 GAVVYIIEQDKVTV 197
V I +
Sbjct: 206 NIEVGICNEAGFRR 219
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 89.0 bits (220), Expect = 2e-22
Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 9/195 (4%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + + + N V IA +K+ A+++ K+ + + G+ D + + K
Sbjct: 30 QGVTSLGIKATNGVVIATEKKS-SSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88
Query: 67 IR-FRQNLYELKENRKMSPKVLLAMISNML----YERRFGPYFVEPMVVGLDPETAEPII 121
R Y+ K+L++ ++ ++ P+ V ++ G D +
Sbjct: 89 SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFN-GFSL 147
Query: 122 GNMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVS 181
+D G P G S E W LE +D L + E +
Sbjct: 148 YQVDPSGSY-FPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FN 205
Query: 182 GWGAVVYIIEQDKVT 196
G + II +
Sbjct: 206 GDTIELAIIGDENPD 220
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 87.0 bits (215), Expect = 9e-22
Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 11/206 (5%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
NG + + + + V A +K + KI V H+ GL D + + +
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLI-TSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNR 87
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERRF----GPYFVEPMVVGLDPETAEPIIG 122
R ++ + + + P+ V + G+D +
Sbjct: 88 GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN--GAHLY 145
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETL---WEPNLEPDDLFETIAQALVNACERNA 179
++ G G E L L + + A+ + A E N
Sbjct: 146 MLEPSGSY-WGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNK 204
Query: 180 VSGWGAVVYIIEQDKVTVRHVKTRMD 205
+ + + H + D
Sbjct: 205 EKDFELEISWCSLSETNGLHKFVKGD 230
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 83.6 bits (206), Expect = 2e-20
Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 13/201 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
+ +A+ GK+C + K+ IF + + + + G D + +
Sbjct: 29 TNINSLAVRGKDCTVVISQKKV-PDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYERR----FGPYFVEPMVVGLDPETAEPIIG 122
+ + K M VL ++N+ P V V +D E P I
Sbjct: 88 AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEEL-GPSIY 146
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACE------ 176
D G GP ++ E ++ + E+ + + A
Sbjct: 147 KTDPAGYY-VGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDAL 205
Query: 177 RNAVSGWGAVVYIIEQDKVTV 197
S V + +DK
Sbjct: 206 GTEFSKNDLEVGVATKDKFFT 226
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 81.2 bits (200), Expect = 2e-19
Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 9/180 (5%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + + + K V + DKR G D +KI+++ H+ GL D + + +
Sbjct: 30 RGATAIGIKCKEGVILIADKRVG-SKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDR 88
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
R + L + ++ K L I + + P+ V ++ G++ P +
Sbjct: 89 ARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE---VPKLY 145
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
D G + G + E + +L DD A+ + E V
Sbjct: 146 ETDPSGAL-LEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPE 204
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 78.1 bits (192), Expect = 2e-18
Identities = 36/195 (18%), Positives = 71/195 (36%), Gaps = 13/195 (6%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + K + KR + LA + +KI V +H+ + + GL D + +
Sbjct: 28 QGSATVGLKSKTHAVLVALKR---AQSELAAHQKKILHVDNHIGISIAGLTADARLLCNF 84
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNM--LYERRFG--PYFVEPMVVGLDPETAEPIIG 122
+R +R + L+++I + + +R+G PY V ++ G D P I
Sbjct: 85 MRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM--GPHIF 142
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPD--DLFETIAQALVNA-CERNA 179
+ G S E +E + +L + +AL
Sbjct: 143 QTCPSANYFD-CRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQD 201
Query: 180 VSGWGAVVYIIEQDK 194
++ + I+ +D
Sbjct: 202 LTTKNVSIGIVGKDL 216
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 76.2 bits (187), Expect = 1e-17
Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 10/200 (5%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + VA+ GK+C I K+ + +F++ ++ + G+ D+++ Q+
Sbjct: 34 GGLTSVAVRGKDCAVIVTQKKV-PDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNM----LYERRFGPYFVEPMVVGLDPETAEPIIG 122
R+ ++ K ++ +L I+++ P +++G+D E P +
Sbjct: 93 ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQ-GPQVY 151
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCE--TLWEPNLEPDDLFETIAQALVNACERNAV 180
D G G + E + + + ET L +
Sbjct: 152 KCDPAGYY-CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF- 209
Query: 181 SGWGAVVYIIEQDKVTVRHV 200
V ++ + R +
Sbjct: 210 KPSEIEVGVVTVENPKFRIL 229
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 74.7 bits (183), Expect = 4e-17
Identities = 29/192 (15%), Positives = 68/192 (35%), Gaps = 8/192 (4%)
Query: 7 NGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQK 66
G + V + G++ V + +K+ + +KI + ++ + GL D + V +
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKKS-VAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85
Query: 67 IRFRQNLYELKENRKMSPKVLLAMISNMLYE----RRFGPYFVEPMVVGLDPETAEPIIG 122
R + L ++ + + I+++ P+ + ++VG D + P +
Sbjct: 86 ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDG-TPRLY 144
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
D G + G + + E + D TI + E G
Sbjct: 145 QTDPSGTYHA-WKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSGG 202
Query: 183 WGAVVYIIEQDK 194
+ ++ +D+
Sbjct: 203 KNIELAVMRRDQ 214
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 56.3 bits (135), Expect = 9e-11
Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 13/169 (7%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYVGLPGLATDTQTVYQKIRF 69
+I+ + + D + T L N +K+ ++G + +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61
Query: 70 RQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIGC 129
+ K + ++ ++ + R V
Sbjct: 62 AKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFI---------ISGNGEV 112
Query: 130 VNQPSDFVVGGPCSDQLYGMCETLWE-PNLEPDDLFETIAQALVNACER 177
+ D G + L +L ++ E +A+ A E
Sbjct: 113 IQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVE---KAMTIAGEI 158
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 54.8 bits (131), Expect = 3e-10
Identities = 22/189 (11%), Positives = 53/189 (28%), Gaps = 12/189 (6%)
Query: 5 TYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH--MYVGLPGLATDTQT 62
+++ +I A+ K A++ D + + + + + + + G G D T
Sbjct: 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFT 61
Query: 63 VYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIG 122
+++K + Y R +L + + ++
Sbjct: 62 LFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQD---------TLLLV 112
Query: 123 NMDLIGCVNQPSDFVVGGPCSDQLYGMCETLWEPNLEPDDLFETIAQALVNACERNAVSG 182
+ + G + L + E E AL A E +
Sbjct: 113 SGTGEVI-EPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTN 171
Query: 183 WGAVVYIIE 191
++ +E
Sbjct: 172 DQIILEELE 180
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 45.5 bits (107), Expect = 5e-07
Identities = 24/170 (14%), Positives = 61/170 (35%), Gaps = 14/170 (8%)
Query: 10 SIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSH-MYVGLPGLATDTQTVYQKIR 68
+IV++ V + D + + T + N +K+ ++ + + G G D T+++
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61
Query: 69 FRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEPIIGNMDLIG 128
+ +++ + A+ + +E M++ D + + I G D
Sbjct: 62 RKLEMHQGHLLKS-------AVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGD--V 112
Query: 129 CVNQPSDFVVGGPCSDQLYGMCETLWE-PNLEPDDLFETIAQALVNACER 177
+ + G + L E L ++ + ++L A +
Sbjct: 113 VQPEEDQILAIGSGGNYALSAARALVENTELSAHEI---VEKSLRIAGDI 159
>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 30.3 bits (68), Expect = 0.13
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 68 RFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYFVEPMVVGLDPETAEP 119
LY++ R P+ + + + ++ R P V P G+ + P
Sbjct: 158 SVCHCLYQVVSQR--FPQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPP 207
>d1k0ra4 d.202.1.1 (A:-4-99) Transcription factor NusA, N-terminal
domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 104
Score = 27.8 bits (62), Expect = 0.42
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 155 EPNLEPDDLFETIAQALVNACERN 178
+ + ++L ETI AL+ A
Sbjct: 19 DRGISVNELLETIKSALLTAYRHT 42
>d1hh2p4 d.202.1.1 (P:1-126) Transcription factor NusA, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 126
Score = 27.2 bits (60), Expect = 0.89
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 155 EPNLEPDDLFETIAQALVNACERN 178
E + +++ + +ALV+A +N
Sbjct: 15 EKGISKEEVIPILEKALVSAYRKN 38
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 26.8 bits (58), Expect = 1.9
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 2 SIMTYNGGSIVAMTGKNCVAIACDKRFGIQGTALADNFQKIFQVGSHMYV---GLPGLAT 58
I Y GS TG +++C K F + + QKI + + L+
Sbjct: 116 HISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSN 175
Query: 59 DTQTVYQKIRFRQNLYELKENRKMSPKVLLAMISNMLYERRFGPYF 104
+ + ++ K L + + + E+ P+
Sbjct: 176 SKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFL 221
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 124
Score = 25.1 bits (55), Expect = 3.4
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 65 QKIRFRQNLYELKENRKMSPKVLLAMISNMLYERR 99
++ L+ +P + +ISN L E R
Sbjct: 80 LIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREER 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 777,244
Number of extensions: 35682
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 44
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)