BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15277
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 40.0 bits (92), Expect = 0.018, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISN--LNSNNSLVPKIYSHWLDLKSCG 103
AELMAILL +++ K I++DS AL IS+ S + +V +I ++ +
Sbjct: 1063 AELMAILLALQDSK----ETVNIVTDSQYALGVISSQPTQSESPIVQQI----IEELTKK 1114
Query: 104 KNLCFLWCPSHCGIKGNESVD 124
+ + W P+H GI GNE +D
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKID 1135
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISN--LNSNNSLVPKIYSHWLDLKSCG 103
AELMA+L+ +++ K + I++DS L IS+ S++ +V +I ++ +
Sbjct: 1065 AELMAVLIALQDSK----EQVNIVTDSQYVLGIISSQPTQSDSPIVQQI----IEELTKK 1116
Query: 104 KNLCFLWCPSHCGIKGNESVD 124
+ + W P+H GI GNE +D
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKID 1137
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL-----------NSNNSLVPKIYS 94
AE+ A I+ K NK ++ +DSM + I+N ++ ++ K
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 95 HWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARN 129
L+ + G ++ ++ P H G GNE D AR
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 279
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISN-----------LNSNNSLVPKIYS 94
AE+ A I K +K ++ +DSM + I+N ++ ++ K
Sbjct: 184 AEIHAACKAIMQAKAQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDF 243
Query: 95 HWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARN 129
LD + G ++ ++ P H G GNE D AR
Sbjct: 244 MELDELTQGMDIQWMHIPGHSGFVGNEEADRLARE 278
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL-----------NSNNSLVPKIYS 94
AE+ A I K +K ++ +DSM + I+N ++ ++ K
Sbjct: 184 AEIHAACKAITQAKAQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKDVINKEDF 243
Query: 95 HWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARN 129
LD + G ++ ++ P H G GNE D AR
Sbjct: 244 MELDELTQGMDIQWMHIPGHSGFVGNEEADRLARE 278
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL--NSNNSLVPKIYSHWLDLKSCG 103
AEL AILL ++ + I++DS A+ I + S + LV +I +
Sbjct: 1074 AELQAILLALQE----SGQEANIVTDSQYAMGIIHSQPDKSESDLVGQIIEELIK----- 1124
Query: 104 KNLCFL-WCPSHCGIKGNESVD 124
K +L W P+H GI GNE VD
Sbjct: 1125 KERVYLSWVPAHKGIGGNEQVD 1146
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.7 bits (73), Expect = 2.9, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL--NSNNSLVPKIYSHWLDLKSCG 103
AEL AI L +++ ++ I++DS AL I S + LV +I +
Sbjct: 1059 AELQAICLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIK----K 1110
Query: 104 KNLCFLWCPSHCGIKGNESVD 124
+ + W P+H GI GNE VD
Sbjct: 1111 ERIYLSWVPAHKGIGGNEQVD 1131
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 32.7 bits (73), Expect = 3.1, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL--NSNNSLVPKIYSHWLDLKSCG 103
AEL AIL+ ++ I++DS A+ I + S + LV +I +
Sbjct: 1074 AELQAILMALQE----SGRDVNIVTDSQYAMGIIHSQPDKSESELVSQIIEELIK----- 1124
Query: 104 KNLCFL-WCPSHCGIKGNESVD 124
K +L W P+H GI GNE VD
Sbjct: 1125 KERVYLSWVPAHKGIGGNEQVD 1146
>sp|Q6C7Q4|HAT2_YARLI Histone acetyltransferase type B subunit 2 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=HAT2 PE=3 SV=1
Length = 452
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 55 IKNLKFLPHNKFIIISDSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKNLCFLWCPSH 114
I +L F PH++F++ + S + ++ ++ + ++YSH C + WCP
Sbjct: 305 INSLDFNPHSEFLVATGSADETVKVWDMRKMDTPISQLYSH------CDEVTKVQWCPHQ 358
Query: 115 CGIKGNESVDNA 126
+ + D A
Sbjct: 359 PSVLASGGHDRA 370
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 32.0 bits (71), Expect = 5.0, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 46 AELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKN 105
AE+ A+LL +K + II+DS L LN L+ ++ L+
Sbjct: 632 AEVQALLLALK----AGSEEMNIITDSQYILNI---LNQQPDLMEGLWQEVLEQMEKKIA 684
Query: 106 LCFLWCPSHCGIKGNESVD 124
+ W P H GI GNE VD
Sbjct: 685 IFIDWVPGHKGIPGNEEVD 703
>sp|A6MMQ5|YCF1_DIOEL Putative membrane protein ycf1 OS=Dioscorea elephantipes GN=ycf1
PE=3 SV=1
Length = 1858
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 53 LCIKNLKFLPHNKFIIISDSMSALQAISNLNSNN-------SLVPKIYSHWLDLKSCGKN 105
+ + NL F N FI+ S +++ L I NN S V + H+L +K G
Sbjct: 133 VFLNNLIFQLLNHFILPSSTLARLVNIYMFRCNNKMLFVTSSFVGWLIGHFLFMKWLG-- 190
Query: 106 LCFLWCPSHCGIKGNESVDNAARN 129
L W P + I+ N+ + + RN
Sbjct: 191 LVLFWIPQNYSIRSNKYLVSELRN 214
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 31.2 bits (69), Expect = 9.3, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 12 FSDGS--KTPNSTSCAYSIDKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIII 69
++DGS +T Y D+ + + + AEL A L + + + P I+
Sbjct: 1050 YTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALALTDSE--PQVNIIVD 1107
Query: 70 SDSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKNLCFL-WCPSHCGIKGNESVDN 125
S + + A + + +V KI + K ++ W P+H G+ GN+ VD+
Sbjct: 1108 SQYVMGIIAAQPTETESPIVAKIIEEMIK-----KEAVYVGWVPAHKGLGGNQEVDH 1159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,320,729
Number of Sequences: 539616
Number of extensions: 3882205
Number of successful extensions: 9385
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9379
Number of HSP's gapped (non-prelim): 21
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)