Query psy15277
Match_columns 269
No_of_seqs 180 out of 1526
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 16:58:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.9 7E-24 1.5E-28 170.2 11.7 127 6-134 3-143 (161)
2 COG0328 RnhA Ribonuclease HI [ 99.9 3.4E-24 7.3E-29 169.2 9.2 127 7-134 2-146 (154)
3 PF00075 RNase_H: RNase H; In 99.9 3.5E-24 7.5E-29 167.5 7.7 117 7-131 2-131 (132)
4 PRK08719 ribonuclease H; Revie 99.9 2.1E-23 4.6E-28 165.9 12.3 122 6-132 2-146 (147)
5 PRK00203 rnhA ribonuclease H; 99.9 9E-23 1.9E-27 163.4 10.9 124 8-134 3-143 (150)
6 cd06222 RnaseH RNase H (RNase 99.8 1.7E-19 3.6E-24 138.0 12.7 122 10-131 1-130 (130)
7 PRK13907 rnhA ribonuclease H; 99.8 7.4E-19 1.6E-23 137.0 9.8 120 9-132 2-126 (128)
8 KOG3752|consensus 99.8 1.7E-18 3.7E-23 152.4 10.3 126 7-132 211-364 (371)
9 PRK07708 hypothetical protein; 99.7 1.7E-16 3.7E-21 134.0 11.7 128 5-136 70-211 (219)
10 PRK07238 bifunctional RNase H/ 99.6 1.2E-14 2.6E-19 132.9 12.0 120 8-132 2-131 (372)
11 PF13456 RVT_3: Reverse transc 99.4 2.8E-13 6E-18 97.7 7.5 85 43-131 1-85 (87)
12 PF13966 zf-RVT: zinc-binding 95.2 0.011 2.4E-07 42.4 1.7 27 208-234 54-83 (86)
13 PF05380 Peptidase_A17: Pao re 90.6 1.1 2.3E-05 36.0 6.7 50 8-59 81-142 (159)
14 PF00336 DNA_pol_viral_C: DNA 84.7 1.3 2.9E-05 36.8 3.8 89 8-113 94-182 (245)
15 COG0296 GlgB 1,4-alpha-glucan 65.5 10 0.00022 37.2 4.8 37 89-125 213-249 (628)
16 COG4566 TtrR Response regulato 58.3 64 0.0014 26.8 7.4 92 50-151 15-119 (202)
17 KOG1812|consensus 53.4 23 0.00051 32.7 4.7 44 40-83 46-89 (384)
18 COG3341 Predicted double-stran 51.1 12 0.00026 31.5 2.2 91 40-134 105-202 (225)
19 cd01285 nucleoside_deaminase N 47.8 86 0.0019 23.0 6.3 53 21-73 18-75 (109)
20 PRK10860 tRNA-specific adenosi 43.5 82 0.0018 25.6 6.0 51 21-71 34-88 (172)
21 smart00642 Aamy Alpha-amylase 40.1 95 0.0021 24.9 5.9 70 48-117 18-97 (166)
22 PF05741 zf-nanos: Nanos RNA b 40.1 13 0.00029 24.2 0.7 19 214-232 34-54 (55)
23 cd01284 Riboflavin_deaminase-r 40.0 1.1E+02 0.0024 23.0 5.8 46 21-70 20-66 (115)
24 COG0590 CumB Cytosine/adenosin 38.4 97 0.0021 24.5 5.6 52 21-72 29-85 (152)
25 cd01286 deoxycytidylate_deamin 38.2 1.5E+02 0.0033 22.6 6.6 27 42-70 67-93 (131)
26 PRK10933 trehalose-6-phosphate 36.0 81 0.0018 30.6 5.7 72 46-117 30-108 (551)
27 PF00098 zf-CCHC: Zinc knuckle 35.8 22 0.00047 17.4 0.9 15 215-232 2-18 (18)
28 COG0295 Cdd Cytidine deaminase 31.3 1.7E+02 0.0037 22.8 5.7 51 21-72 27-81 (134)
29 TIGR02402 trehalose_TreZ malto 30.1 1.2E+02 0.0027 29.3 5.8 72 46-121 108-191 (542)
30 PRK08298 cytidine deaminase; V 30.0 1.7E+02 0.0037 22.8 5.6 51 21-72 24-78 (136)
31 TIGR02403 trehalose_treC alpha 29.7 1.2E+02 0.0026 29.3 5.7 72 46-117 24-102 (543)
32 PF13917 zf-CCHC_3: Zinc knuck 25.1 44 0.00095 20.5 1.2 18 212-232 3-22 (42)
33 PF13821 DUF4187: Domain of un 24.7 29 0.00063 22.5 0.4 20 214-233 28-50 (55)
34 KOG1994|consensus 24.4 27 0.00059 29.6 0.2 24 210-233 236-262 (268)
35 PF15322 PMSI1: Protein missin 24.3 38 0.00082 29.7 1.1 16 188-203 212-227 (311)
36 COG0100 RpsK Ribosomal protein 23.8 3.5E+02 0.0075 20.9 8.2 63 4-72 26-88 (129)
37 PRK12568 glycogen branching en 22.7 1.1E+02 0.0025 30.8 4.2 32 89-120 318-349 (730)
38 COG0117 RibD Pyrimidine deamin 21.5 2.2E+02 0.0048 22.5 4.7 38 18-55 25-63 (146)
39 PRK02228 V-type ATP synthase s 21.4 3.3E+02 0.0071 19.8 5.6 67 62-131 19-94 (100)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.91 E-value=7e-24 Score=170.19 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=94.0
Q ss_pred CCceEEEecCCCCCC--CeeEEEEeCCeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc--
Q psy15277 6 LDSVVCFSDGSKTPN--STSCAYSIDKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISN-- 81 (269)
Q Consensus 6 ~~~~~i~tDGS~~~~--~~G~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~-- 81 (269)
++.++||||||+.++ ..|+|++..............|+++|||.||+.||+.+.. +..+|.|+|||++++++++.
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~~~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W~ 81 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKWV 81 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcEEccCCCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHHH
Confidence 456999999999874 4788876533211122234689999999999999986643 44579999999999999994
Q ss_pred -------CCCCC--Cc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCC
Q psy15277 82 -------LNSNN--SL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNT 134 (269)
Q Consensus 82 -------~~~~~--~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~ 134 (269)
+...+ +. -.++.+.+..+.+. ..|+|.|||||+|.+|||.||.||++|+...
T Consensus 82 ~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~~ 143 (161)
T PRK06548 82 YSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAANNF 143 (161)
T ss_pred HHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 22222 22 25666655555544 4799999999999999999999999987543
No 2
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.4e-24 Score=169.25 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=100.5
Q ss_pred CceEEEecCCCCCC--CeeEEEEe--CCeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 7 DSVVCFSDGSKTPN--STSCAYSI--DKQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 7 ~~~~i~tDGS~~~~--~~G~~~~~--~~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
..+.||||||+..+ ..|+|++. ++.. .+.... .+|+++||++|++.||+++.+.+...|.|+|||++|+++|.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 46899999999874 37777543 3222 334444 89999999999999999999888999999999999999998
Q ss_pred cCCCC---C--------C-cHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCC
Q psy15277 81 NLNSN---N--------S-LVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNT 134 (269)
Q Consensus 81 ~~~~~---~--------~-~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~ 134 (269)
.+... . + ....+++.+..+......|.+.|||||.|.++||.||+||+.|+...
T Consensus 81 ~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 81 RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 43111 1 1 13466666667777777999999999999999999999999987654
No 3
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.90 E-value=3.5e-24 Score=167.47 Aligned_cols=117 Identities=31% Similarity=0.466 Sum_probs=87.9
Q ss_pred CceEEEecCCCCC--CCeeEEEE-eCCeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc--
Q psy15277 7 DSVVCFSDGSKTP--NSTSCAYS-IDKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISN-- 81 (269)
Q Consensus 7 ~~~~i~tDGS~~~--~~~G~~~~-~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~-- 81 (269)
+.+.||||||+.+ +..|+|++ ......+..++ ..+++.|||.||..||+ +.. ...++|+|||+++++.+..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~-~~~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALK-ALE--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHH-THS--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHH-Hhh--cccccccccHHHHHHHHHHhc
Confidence 5789999999764 33566654 43433344455 88999999999999999 443 3999999999999998877
Q ss_pred ---CCCCC----CcHHHHHHHHHHHhhcCCcEEEEEeCCCCCC-ccccccchhhcCCC
Q psy15277 82 ---LNSNN----SLVPKIYSHWLDLKSCGKNLCFLWCPSHCGI-KGNESVDNAARNPN 131 (269)
Q Consensus 82 ---~~~~~----~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~-~gNe~AD~lAk~a~ 131 (269)
..... ++..+|.+ .+ ..+..|.|.|||||+|+ .||+.||+|||+|+
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~---~~-~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWE---LL-SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHH---HH-HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheee---cc-ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 33222 23444544 33 55899999999999999 69999999999864
No 4
>PRK08719 ribonuclease H; Reviewed
Probab=99.90 E-value=2.1e-23 Score=165.86 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=91.2
Q ss_pred CCceEEEecCCCCCCC-----eeEEEE--eC--CeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHH
Q psy15277 6 LDSVVCFSDGSKTPNS-----TSCAYS--ID--KQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMS 74 (269)
Q Consensus 6 ~~~~~i~tDGS~~~~~-----~G~~~~--~~--~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~ 74 (269)
.+.++||||||+..++ +|+|++ .+ ... .+..+....|+++|||.|++.||+.+.+. .+|+|||++
T Consensus 2 ~~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~y 77 (147)
T PRK08719 2 RASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDY 77 (147)
T ss_pred CceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHH
Confidence 4678999999996543 477864 22 222 34445566899999999999999998653 379999999
Q ss_pred HHHHHh--------cCCCCC-C--c-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCC
Q psy15277 75 ALQAIS--------NLNSNN-S--L-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNY 132 (269)
Q Consensus 75 ~i~~l~--------~~~~~~-~--~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~ 132 (269)
++++++ +.+..+ + . ...+++.+..+.+ ...|+|.|||||+|++|||.||+||++|+.
T Consensus 78 vi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 78 CVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred HHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 999994 333322 2 1 2455555555555 467999999999999999999999999864
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.89 E-value=9e-23 Score=163.39 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=90.6
Q ss_pred ceEEEecCCCCCC--CeeEEEEe--CCeEE-EeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy15277 8 SVVCFSDGSKTPN--STSCAYSI--DKQIH-SFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL 82 (269)
Q Consensus 8 ~~~i~tDGS~~~~--~~G~~~~~--~~~~~-~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~ 82 (269)
.+.||||||+..+ ..|+|++. ++... ........|+++|||.|++.||+.+.. ...+.|+|||+++++.|+.+
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 4899999999764 37777553 33221 222234688999999999999998865 46899999999999999862
Q ss_pred --------C-CCC--Cc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCC
Q psy15277 83 --------N-SNN--SL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNT 134 (269)
Q Consensus 83 --------~-~~~--~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~ 134 (269)
+ ... ++ ...+++.+..+.. ...|.|.|||||+|++||+.||+|||+|...+
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~-~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~ 143 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAALK-RHQIKWHWVKGHAGHPENERCDELARAGAEEA 143 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHhc-cCceEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 111 22 2334444444433 37899999999999999999999999987654
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.82 E-value=1.7e-19 Score=138.03 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=95.0
Q ss_pred EEEecCCCCCC--CeeEEEEeCC--e--EE-EeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy15277 10 VCFSDGSKTPN--STSCAYSIDK--Q--IH-SFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL 82 (269)
Q Consensus 10 ~i~tDGS~~~~--~~G~~~~~~~--~--~~-~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~ 82 (269)
++|||||...+ ++|+|++..+ . .. ........+++.+|+.|+..||+++...+..++.|++||+.+++.+++.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999999875 5788865422 1 11 1222257899999999999999999988899999999999999999987
Q ss_pred CCC-CCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCC
Q psy15277 83 NSN-NSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPN 131 (269)
Q Consensus 83 ~~~-~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~ 131 (269)
... ......+...+..+......++|.|||+|++..+|+.||.|||.+.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 652 2234444444444556788999999999999999999999999863
No 7
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.78 E-value=7.4e-19 Score=136.97 Aligned_cols=120 Identities=19% Similarity=0.174 Sum_probs=93.2
Q ss_pred eEEEecCCCCCC--CeeEEEEeCC--eEEEe-eCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCC
Q psy15277 9 VVCFSDGSKTPN--STSCAYSIDK--QIHSF-NLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNLN 83 (269)
Q Consensus 9 ~~i~tDGS~~~~--~~G~~~~~~~--~~~~~-~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~~ 83 (269)
++||||||+..+ .+|+|++..+ ..... ......+++.||+.|++.||+.+.+.+..++.|++||+.+++.+++.+
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~ 81 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEY 81 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHH
Confidence 689999999864 4788876422 21111 223467999999999999999999999899999999999999999966
Q ss_pred CCCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCC
Q psy15277 84 SNNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNY 132 (269)
Q Consensus 84 ~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~ 132 (269)
........+.+.+..+......+.|.|||+ +.|+.||.||+.|..
T Consensus 82 ~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~ 126 (128)
T PRK13907 82 AKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAIL 126 (128)
T ss_pred hcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHHh
Confidence 544444555555555666677888899995 699999999998764
No 8
>KOG3752|consensus
Probab=99.77 E-value=1.7e-18 Score=152.43 Aligned_cols=126 Identities=22% Similarity=0.234 Sum_probs=96.7
Q ss_pred CceEEEecCCCCCCC-----eeEEEEeCC---eEEEeeCC-CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHH
Q psy15277 7 DSVVCFSDGSKTPNS-----TSCAYSIDK---QIHSFNLN-KVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQ 77 (269)
Q Consensus 7 ~~~~i~tDGS~~~~~-----~G~~~~~~~---~~~~~~~~-~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~ 77 (269)
+..++|||||+..+| +|+||+.++ ...+..+. +..++|.|||.|+..||+-|.+.+..+|+|.|||+.+++
T Consensus 211 ~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i~ 290 (371)
T KOG3752|consen 211 EIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFIN 290 (371)
T ss_pred cceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHHH
Confidence 348999999998743 899987543 23456665 789999999999999999999888889999999999999
Q ss_pred HHhcCCCC-----------CCc------HHHHHHHHHHH-hh-cCCcEEEEEeCCCCCCccccccchhhcCCCC
Q psy15277 78 AISNLNSN-----------NSL------VPKIYSHWLDL-KS-CGKNLCFLWCPSHCGIKGNESVDNAARNPNY 132 (269)
Q Consensus 78 ~l~~~~~~-----------~~~------~~~i~~~~~~l-~~-~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~ 132 (269)
.|+.+... ++. .......+..| +. .+..|.+.|||||.|+.||++||.||++++.
T Consensus 291 ~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~ 364 (371)
T KOG3752|consen 291 SLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGST 364 (371)
T ss_pred HHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhhh
Confidence 99864321 120 11112222223 33 4789999999999999999999999998853
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.69 E-value=1.7e-16 Score=133.96 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=95.1
Q ss_pred CCCceEEEecCCCCC--CCeeEEEEe--CC--eEE----EeeCCCCCchHHHHHHHHHHHHHHhhcCCCCe--EEEEeCc
Q psy15277 5 YLDSVVCFSDGSKTP--NSTSCAYSI--DK--QIH----SFNLNKVNSVFSAELMAILLCIKNLKFLPHNK--FIIISDS 72 (269)
Q Consensus 5 ~~~~~~i~tDGS~~~--~~~G~~~~~--~~--~~~----~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~--v~I~sDS 72 (269)
-|+.+++|+|||... +++|+|++. .+ ... ...++...+++.||+.|++.||+.+.+.+.+. |.|++||
T Consensus 70 ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DS 149 (219)
T PRK07708 70 EPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDS 149 (219)
T ss_pred CCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEecc
Confidence 367799999999864 457888543 22 111 12455568999999999999999999988765 8999999
Q ss_pred HHHHHHHhcCCCC-CCcHHHHHHHHHH-HhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCCcc
Q psy15277 73 MSALQAISNLNSN-NSLVPKIYSHWLD-LKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNTTL 136 (269)
Q Consensus 73 ~~~i~~l~~~~~~-~~~~~~i~~~~~~-l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~~~ 136 (269)
+.+++++++.+.. ++....+.+.+.. +.+....+.|.||| ++.|+.||+||++|.....+
T Consensus 150 qlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~~~ 211 (219)
T PRK07708 150 QVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGTVI 211 (219)
T ss_pred HHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcCCC
Confidence 9999999987644 3344444444433 33334568889998 68899999999999986554
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.58 E-value=1.2e-14 Score=132.93 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=93.5
Q ss_pred ceEEEecCCCCCC--CeeEEEEe--CC-e-E-E--EeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHH
Q psy15277 8 SVVCFSDGSKTPN--STSCAYSI--DK-Q-I-H--SFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQA 78 (269)
Q Consensus 8 ~~~i~tDGS~~~~--~~G~~~~~--~~-~-~-~--~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~ 78 (269)
.+.||||||+.++ .+|+|++. .+ . . . ...++ .++++.||+.|++.||+.+.+.+.+.|.|++||+.+++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 4789999999875 47888653 22 1 1 1 22233 788999999999999999999999999999999999999
Q ss_pred HhcCCC-CCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCC
Q psy15277 79 ISNLNS-NNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNY 132 (269)
Q Consensus 79 l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~ 132 (269)
+++.+. .+.-+..+.+.+..+.+....++|.|||+ ++|+.||.||+.|..
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~~ 131 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAMD 131 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHHH
Confidence 998654 33334455555556667778899999994 899999999998864
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.45 E-value=2.8e-13 Score=97.69 Aligned_cols=85 Identities=24% Similarity=0.157 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccc
Q psy15277 43 VFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNES 122 (269)
Q Consensus 43 ~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~ 122 (269)
+..||+.|+..||+.+.+.|.++|.|+|||+.+++.+++..........+...+..+.+....+.|.||| +++|..
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~ 76 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHH
Confidence 4689999999999999999999999999999999999997654335566666666777778999999999 899999
Q ss_pred cchhhcCCC
Q psy15277 123 VDNAARNPN 131 (269)
Q Consensus 123 AD~lAk~a~ 131 (269)
||.|||.|.
T Consensus 77 A~~LA~~a~ 85 (87)
T PF13456_consen 77 ADALAKFAL 85 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999763
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=95.21 E-value=0.011 Score=42.39 Aligned_cols=27 Identities=33% Similarity=0.739 Sum_probs=22.8
Q ss_pred cCCCCCCCc-cCC-CCcccchh-ccCcchH
Q psy15277 208 FNKTPRPSC-SCG-EPLSVQHL-LSCPSHD 234 (269)
Q Consensus 208 ~~~~~~p~C-~Cg-~~et~~Hi-~~Cp~~~ 234 (269)
.+...++.| .|+ +.||++|+ ++||...
T Consensus 54 r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 54 RGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred cCCccCCccccCCCccccccceeccCcCcc
Confidence 455678999 999 58999999 9999754
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=90.59 E-value=1.1 Score=36.01 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=32.3
Q ss_pred ceEEEecCCCCCCCeeEEEEe---CC-e-E---EE--eeCC--CCCchHHHHHHHHHHHHHHhh
Q psy15277 8 SVVCFSDGSKTPNSTSCAYSI---DK-Q-I---HS--FNLN--KVNSVFSAELMAILLCIKNLK 59 (269)
Q Consensus 8 ~~~i~tDGS~~~~~~G~~~~~---~~-~-~---~~--~~~~--~~~s~~~aEl~Ai~~aL~~~~ 59 (269)
.+.+|+|+|. .+.|+.++. .+ . . .. .++. ...|+-+-||.|+..|.+++.
T Consensus 81 ~L~~F~DAS~--~aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~ 142 (159)
T PF05380_consen 81 ELHVFCDASE--SAYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLAN 142 (159)
T ss_pred eeeEeecccc--cceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5899999995 445555432 11 1 1 11 1121 345999999999999999875
No 14
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=84.73 E-value=1.3 Score=36.78 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=48.9
Q ss_pred ceEEEecCCCCCCCeeEEEEeCCeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCCC
Q psy15277 8 SVVCFSDGSKTPNSTSCAYSIDKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNLNSNNS 87 (269)
Q Consensus 8 ~~~i~tDGS~~~~~~G~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~~~~~~ 87 (269)
--.||+|+.- +|.|+..............-.+..|||+|.-.|.-+.. .++ |.|||..|+. +....-+
T Consensus 94 lc~VfaDATp----Tgwgi~i~~~~~~~Tfs~~l~IhtaELlaaClAr~~~~----~r~-l~tDnt~Vls---rkyts~P 161 (245)
T PF00336_consen 94 LCQVFADATP----TGWGISITGQRMRGTFSKPLPIHTAELLAACLARLMSG----ARC-LGTDNTVVLS---RKYTSFP 161 (245)
T ss_pred CCceeccCCC----CcceeeecCceeeeeecccccchHHHHHHHHHHHhccC----CcE-EeecCcEEEe---cccccCc
Confidence 3568888875 34444332222222223355689999999988776552 233 8999987652 2222222
Q ss_pred cHHHHHHHHHHHhhcCCcEEEEEeCC
Q psy15277 88 LVPKIYSHWLDLKSCGKNLCFLWCPS 113 (269)
Q Consensus 88 ~~~~i~~~~~~l~~~~~~v~~~wvp~ 113 (269)
........+ .| ..+.|..||+
T Consensus 162 W~lac~A~w-iL----rgts~~yVPS 182 (245)
T PF00336_consen 162 WLLACAANW-IL----RGTSFYYVPS 182 (245)
T ss_pred HHHHHHHHH-hh----cCceEEEecc
Confidence 222222211 12 3578888996
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=65.49 E-value=10 Score=37.22 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccch
Q psy15277 89 VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDN 125 (269)
Q Consensus 89 ~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~ 125 (269)
...++..+..+.+.|+.|-+-|||+|.+..||-.+-.
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~f 249 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARF 249 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhc
Confidence 5677777778999999999999999999988876643
No 16
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=58.29 E-value=64 Score=26.82 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCC--------CCc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccc
Q psy15277 50 AILLCIKNLKFLPHNKFIIISDSMSALQAISNLNSN--------NSL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGN 120 (269)
Q Consensus 50 Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~~~~--------~~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gN 120 (269)
++..||.++++...=.+..|+..+.-+.......+. .++ ..++++ .|..++...-+..+-||-+|+
T Consensus 15 ~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~---~L~~~~~~~PVIfiTGhgDIp-- 89 (202)
T COG4566 15 SVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQD---RLAERGIRLPVIFLTGHGDIP-- 89 (202)
T ss_pred HHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHH---HHHhcCCCCCEEEEeCCCChH--
Confidence 567778877776666788899999888874333222 111 346666 677778887788899999998
Q ss_pred cccchhhcCCCCCCcc----ccCChhhhHHHHHHH
Q psy15277 121 ESVDNAARNPNYNTTL----RKCTSDDFRPIISTI 151 (269)
Q Consensus 121 e~AD~lAk~a~~~~~~----~~~~~~~~k~~ik~~ 151 (269)
+|.+|.+.+-. .|++.+++...++..
T Consensus 90 -----maV~AmK~GAvDFLeKP~~~q~Lldav~~A 119 (202)
T COG4566 90 -----MAVQAMKAGAVDFLEKPFSEQDLLDAVERA 119 (202)
T ss_pred -----HHHHHHHcchhhHHhCCCchHHHHHHHHHH
Confidence 44444443322 244555544444443
No 17
>KOG1812|consensus
Probab=53.41 E-value=23 Score=32.67 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCC
Q psy15277 40 VNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNLN 83 (269)
Q Consensus 40 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~~ 83 (269)
..+...||++|+..+|..+.+.+...+.+++|+......+....
T Consensus 46 ~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~~ 89 (384)
T KOG1812|consen 46 SITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGRE 89 (384)
T ss_pred ccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhhh
Confidence 36789999999999999999999999999999766666444443
No 18
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=51.07 E-value=12 Score=31.46 Aligned_cols=91 Identities=15% Similarity=0.046 Sum_probs=60.5
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEE-E----eCcHHHHHHHhcCCCCCCcHHHHHHHHHHHhhc--CCcEEEEEeC
Q psy15277 40 VNSVFSAELMAILLCIKNLKFLPHNKFII-I----SDSMSALQAISNLNSNNSLVPKIYSHWLDLKSC--GKNLCFLWCP 112 (269)
Q Consensus 40 ~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I-~----sDS~~~i~~l~~~~~~~~~~~~i~~~~~~l~~~--~~~v~~~wvp 112 (269)
..++..+|.+|++.+|+.+...+....+| + .||++.++-+.+-....- ....+ +..-+. +....+.|+-
T Consensus 105 ~~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~ds~a~~k~~k~~~~~k~--~~~~~--~e~~~~~~~v~h~~k~i~ 180 (225)
T COG3341 105 IKSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGNDSWAYFKYVKDKCETKV--NLLKD--REFFSIGKGVFHDEKDIN 180 (225)
T ss_pred cccCchHHHHHHhccccccccccCccceeeccCCcchhHHHHHHHhhhhhhHH--HHHHh--HHhhhccchhhhhhhhcc
Confidence 45678899999999999998876555544 7 799999988876432110 01111 011122 2456667888
Q ss_pred CCCCCccccccchhhcCCCCCC
Q psy15277 113 SHCGIKGNESVDNAARNPNYNT 134 (269)
Q Consensus 113 ~H~g~~gNe~AD~lAk~a~~~~ 134 (269)
-|..+..+..++.++.......
T Consensus 181 ~~~~~~~~~~~~s~~~~~~k~~ 202 (225)
T COG3341 181 IHIWIFESKKGNSHVYNTSKKE 202 (225)
T ss_pred cccccchhhhhhhhhhchhhhh
Confidence 8988888888888887665543
No 19
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=47.78 E-value=86 Score=23.03 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=33.8
Q ss_pred CeeEEEEeC-CeEEEeeCC----CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcH
Q psy15277 21 STSCAYSID-KQIHSFNLN----KVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSM 73 (269)
Q Consensus 21 ~~G~~~~~~-~~~~~~~~~----~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~ 73 (269)
.+|+.++.+ +.....+.. .......||+.||..+.+..........++|+--+
T Consensus 18 ~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~E 75 (109)
T cd01285 18 PFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLE 75 (109)
T ss_pred cEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCC
Confidence 478777865 443333322 23457789999999988865433456677777654
No 20
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=43.51 E-value=82 Score=25.55 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=30.0
Q ss_pred CeeEEEEeCCeEEEeeCC----CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q psy15277 21 STSCAYSIDKQIHSFNLN----KVNSVFSAELMAILLCIKNLKFLPHNKFIIISD 71 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~----~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sD 71 (269)
.+|+.+|.++...+.+.. .......||+.||..|.+..........++|+-
T Consensus 34 pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~T 88 (172)
T PRK10860 34 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVT 88 (172)
T ss_pred CEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEee
Confidence 478877765444333221 122346799999999887654433445566644
No 21
>smart00642 Aamy Alpha-amylase domain.
Probab=40.13 E-value=95 Score=24.87 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEe----------CcHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCC
Q psy15277 48 LMAILLCIKNLKFLPHNKFIIIS----------DSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGI 117 (269)
Q Consensus 48 l~Ai~~aL~~~~~~~~~~v~I~s----------DS~~~i~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~ 117 (269)
+.+|..-|.++.+.|...|.+-- +.-+.+.-.....+.-+-...+.+.+..+.++|..|-+-.|+-|++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 56677777777777766554421 11111111111111112246777778889999999999999999887
No 22
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=40.10 E-value=13 Score=24.19 Aligned_cols=19 Identities=32% Similarity=0.656 Sum_probs=8.1
Q ss_pred CCc-cCCCCcccchh-ccCcc
Q psy15277 214 PSC-SCGEPLSVQHL-LSCPS 232 (269)
Q Consensus 214 p~C-~Cg~~et~~Hi-~~Cp~ 232 (269)
-.| .||+..+-.|. -.||.
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 479 99999999999 99996
No 23
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=40.00 E-value=1.1e+02 Score=22.99 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=28.9
Q ss_pred CeeEEEEeC-CeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 21 STSCAYSID-KQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 21 ~~G~~~~~~-~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
.+|+.++.+ +...............||..||..|.+. .....++|+
T Consensus 20 pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~----~l~g~tly~ 66 (115)
T cd01284 20 PVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEK----LARGATLYV 66 (115)
T ss_pred CEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhc----CCCCeEEEE
Confidence 478877765 4444443333336778999999998774 234455554
No 24
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=38.36 E-value=97 Score=24.54 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=31.1
Q ss_pred CeeEEEEe-CCeEEEee----CCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy15277 21 STSCAYSI-DKQIHSFN----LNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDS 72 (269)
Q Consensus 21 ~~G~~~~~-~~~~~~~~----~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS 72 (269)
.+|+.+|. ........ ....--.-.||+.||..|-+.+.....+..++|+=-
T Consensus 29 PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT~ 85 (152)
T COG0590 29 PVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVTL 85 (152)
T ss_pred CEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEEec
Confidence 47777776 33222221 112222347999999999998866555566666543
No 25
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=38.16 E-value=1.5e+02 Score=22.64 Aligned_cols=27 Identities=19% Similarity=0.094 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 42 SVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 42 s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
....||..||..|.+. .......++|+
T Consensus 67 ~~~HAE~~Ai~~a~~~--~~~~~~~tLyv 93 (131)
T cd01286 67 RTVHAEQNAILQAARH--GVSLEGATLYV 93 (131)
T ss_pred CCCCHHHHHHHHHhHc--CCCcCCeEEEE
Confidence 4567999999988664 22234555554
No 26
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=35.97 E-value=81 Score=30.63 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEe-------CcHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCC
Q psy15277 46 AELMAILLCIKNLKFLPHNKFIIIS-------DSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGI 117 (269)
Q Consensus 46 aEl~Ai~~aL~~~~~~~~~~v~I~s-------DS~~~i~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~ 117 (269)
+.+.||...|+++...|...|.+-- |+-+.+.-.....+.=+-...+.+.+..+.++|+.|.+-.|+-|++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 5699999999999999887776521 11111100000001111246777777789999999999999999875
No 27
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=35.77 E-value=22 Score=17.40 Aligned_cols=15 Identities=53% Similarity=1.488 Sum_probs=10.2
Q ss_pred Cc-cCCCCcccchh-ccCcc
Q psy15277 215 SC-SCGEPLSVQHL-LSCPS 232 (269)
Q Consensus 215 ~C-~Cg~~et~~Hi-~~Cp~ 232 (269)
.| .||.. .|+ .+||.
T Consensus 2 ~C~~C~~~---GH~~~~Cp~ 18 (18)
T PF00098_consen 2 KCFNCGEP---GHIARDCPK 18 (18)
T ss_dssp BCTTTSCS---SSCGCTSSS
T ss_pred cCcCCCCc---CcccccCcc
Confidence 57 77753 588 88873
No 28
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=31.25 E-value=1.7e+02 Score=22.81 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.0
Q ss_pred CeeEEEEeC--CeEEEeeCC--CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy15277 21 STSCAYSID--KQIHSFNLN--KVNSVFSAELMAILLCIKNLKFLPHNKFIIISDS 72 (269)
Q Consensus 21 ~~G~~~~~~--~~~~~~~~~--~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS 72 (269)
.+|+++... +.+....+. ...-..-||-.||..|+.. -......|.|++|+
T Consensus 27 ~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~ 81 (134)
T COG0295 27 KVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADT 81 (134)
T ss_pred cEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCC
Confidence 488887643 334344443 3444567999999999887 34457789999998
No 29
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=30.08 E-value=1.2e+02 Score=29.34 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEe--CcHHHHHHHhcC-CC---------CCCcHHHHHHHHHHHhhcCCcEEEEEeCC
Q psy15277 46 AELMAILLCIKNLKFLPHNKFIIIS--DSMSALQAISNL-NS---------NNSLVPKIYSHWLDLKSCGKNLCFLWCPS 113 (269)
Q Consensus 46 aEl~Ai~~aL~~~~~~~~~~v~I~s--DS~~~i~~l~~~-~~---------~~~~~~~i~~~~~~l~~~~~~v~~~wvp~ 113 (269)
+=+.||..-|.++.++|.+.|.+.- ++... .++ +. .-+-...+.+.+..+.++|+.|.+-+|+.
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~----~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGT----RGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCC----CCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 4467888899999998877665421 11100 111 11 01125677777788999999999999999
Q ss_pred CCCCcccc
Q psy15277 114 HCGIKGNE 121 (269)
Q Consensus 114 H~g~~gNe 121 (269)
|++..+|-
T Consensus 184 H~~~~~~~ 191 (542)
T TIGR02402 184 HFGPEGNY 191 (542)
T ss_pred CCCCcccc
Confidence 99876654
No 30
>PRK08298 cytidine deaminase; Validated
Probab=30.05 E-value=1.7e+02 Score=22.79 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=33.6
Q ss_pred CeeEEEEe--CCeEEEeeCC--CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy15277 21 STSCAYSI--DKQIHSFNLN--KVNSVFSAELMAILLCIKNLKFLPHNKFIIISDS 72 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~--~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS 72 (269)
.+|+++.. ++.+...... ......-||..||..|+..-.. ..+.|.|.+|.
T Consensus 24 ~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~G~~-~~~~i~v~~~~ 78 (136)
T PRK08298 24 GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKLQKR-VTHSICVAREN 78 (136)
T ss_pred ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHCCCc-eEEEEEEEcCC
Confidence 78999864 3445455543 2445678999999998865322 35667777776
No 31
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=29.69 E-value=1.2e+02 Score=29.35 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEe-------CcHHHHHHHhcCCCCCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCC
Q psy15277 46 AELMAILLCIKNLKFLPHNKFIIIS-------DSMSALQAISNLNSNNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGI 117 (269)
Q Consensus 46 aEl~Ai~~aL~~~~~~~~~~v~I~s-------DS~~~i~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~ 117 (269)
+-+.||..-|+++..+|...|.+-- |+-+.+.-.....+.-+-...+.+.+..+.++|.+|-+-+|+-|++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~ 102 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTST 102 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 4578899999999988877665521 11111111111111112246777777788999999999999999974
No 32
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=25.13 E-value=44 Score=20.46 Aligned_cols=18 Identities=39% Similarity=1.078 Sum_probs=13.8
Q ss_pred CCCCc-cCCCCcccchh-ccCcc
Q psy15277 212 PRPSC-SCGEPLSVQHL-LSCPS 232 (269)
Q Consensus 212 ~~p~C-~Cg~~et~~Hi-~~Cp~ 232 (269)
....| .|+.. .|. ++||.
T Consensus 3 ~~~~CqkC~~~---GH~tyeC~~ 22 (42)
T PF13917_consen 3 ARVRCQKCGQK---GHWTYECPN 22 (42)
T ss_pred CCCcCcccCCC---CcchhhCCC
Confidence 35679 99843 599 99995
No 33
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=24.68 E-value=29 Score=22.52 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=16.5
Q ss_pred CCc-cCC-CCcccchh-ccCcch
Q psy15277 214 PSC-SCG-EPLSVQHL-LSCPSH 233 (269)
Q Consensus 214 p~C-~Cg-~~et~~Hi-~~Cp~~ 233 (269)
-.| +|| .-.+.+-+ -.||-.
T Consensus 28 ~YC~~Cg~~Y~d~~dL~~~CPG~ 50 (55)
T PF13821_consen 28 NYCFWCGTKYDDEEDLERNCPGP 50 (55)
T ss_pred ceeeeeCCccCCHHHHHhCCCCC
Confidence 569 999 56888889 999964
No 34
>KOG1994|consensus
Probab=24.41 E-value=27 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=18.9
Q ss_pred CCCCCCc-cCCC-Ccccchh-ccCcch
Q psy15277 210 KTPRPSC-SCGE-PLSVQHL-LSCPSH 233 (269)
Q Consensus 210 ~~~~p~C-~Cg~-~et~~Hi-~~Cp~~ 233 (269)
+++.-.| +||. -+|++.+ -+||--
T Consensus 236 R~eh~YC~fCG~~y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 236 RSEHYYCFFCGIKYKDEEDLYEHCPGV 262 (268)
T ss_pred hccceEEEEeccccCCHHHHHHhCCCC
Confidence 3455679 9995 6899999 999963
No 35
>PF15322 PMSI1: Protein missing in infertile sperm 1, putative
Probab=24.27 E-value=38 Score=29.66 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=13.3
Q ss_pred hHhhhhhhcccccccc
Q psy15277 188 EEIVITRLRIGHTRLT 203 (269)
Q Consensus 188 ~~~~l~qlrtGH~~~~ 203 (269)
....|.||||-|-+.+
T Consensus 212 RvGALsqLrTehrPCt 227 (311)
T PF15322_consen 212 RVGALSQLRTEHRPCT 227 (311)
T ss_pred ecchhhhhhhccCCcc
Confidence 5678899999998886
No 36
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=23.82 E-value=3.5e+02 Score=20.95 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=33.6
Q ss_pred CCCCceEEEecCCCCCCCeeEEEEeCCeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy15277 4 KYLDSVVCFSDGSKTPNSTSCAYSIDKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDS 72 (269)
Q Consensus 4 ~~~~~~~i~tDGS~~~~~~G~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS 72 (269)
.++|.++-+||-+... ..++.... ..++-....+.|.|-+. ...+-+.+++.+.+.|.|..+-
T Consensus 26 sfNNTivtitD~~Gn~--i~wassG~---~gfk~~rk~tpyAA~~a-a~~aa~~a~e~Gi~~v~v~vkg 88 (129)
T COG0100 26 SFNNTIVTITDLTGNV--IIWASSGG---MGFKGSRKSTPYAAQLA-AEDAAKKAKEHGIKSVEVKVKG 88 (129)
T ss_pred ccCCcEEEecCCCCCE--EEEEecCC---ceEcCCCCCCHHHHHHH-HHHHHHHHHHhCccEEEEEEEC
Confidence 4566666666655422 11111111 11222235677776554 4455555666889998888775
No 37
>PRK12568 glycogen branching enzyme; Provisional
Probab=22.72 E-value=1.1e+02 Score=30.78 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccc
Q psy15277 89 VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGN 120 (269)
Q Consensus 89 ~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gN 120 (269)
...+...+..+.+.|+.|.+-|||.|++..++
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~ 349 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSAHFPDDAH 349 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCcccc
Confidence 56777777899999999999999999987654
No 38
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=21.54 E-value=2.2e+02 Score=22.50 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCCC-eeEEEEeCCeEEEeeCCCCCchHHHHHHHHHHHH
Q psy15277 18 TPNS-TSCAYSIDKQIHSFNLNKVNSVFSAELMAILLCI 55 (269)
Q Consensus 18 ~~~~-~G~~~~~~~~~~~~~~~~~~s~~~aEl~Ai~~aL 55 (269)
.+|. +|+-++.++.....+.....-.-.||..|+..|=
T Consensus 25 ~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag 63 (146)
T COG0117 25 SPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAG 63 (146)
T ss_pred CCCCceeEEEEECCEEEeeeecCCCCCCcHHHHHHHHcC
Confidence 3443 8988888776555544444566679999998883
No 39
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.37 E-value=3.3e+02 Score=19.76 Aligned_cols=67 Identities=7% Similarity=-0.001 Sum_probs=31.8
Q ss_pred CCCeEEEEeCcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCC
Q psy15277 62 PHNKFIIISDSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPN 131 (269)
Q Consensus 62 ~~~~v~I~sDS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~ 131 (269)
|...+.+..|.+.+.++|.+-... ..+...+.+.+..+......-.+.-+|++. |++..++++++|.
T Consensus 19 Gi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~IP~~~---~~~~i~~~v~raI 94 (100)
T PRK02228 19 GIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGGGG---GSGGLREKIKRAI 94 (100)
T ss_pred CCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEECCCc---cchHHHHHHHHHh
Confidence 444444455555555555542111 112344555555543333433344568743 4455666665553
Done!