Query psy15277
Match_columns 269
No_of_seqs 180 out of 1526
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 16:59:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.1E-25 3.6E-30 180.0 10.6 128 6-134 5-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 5.1E-25 1.7E-29 175.1 11.3 125 4-133 8-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 2.5E-25 8.4E-30 176.3 7.1 123 7-133 3-144 (146)
4 2kq2_A Ribonuclease H-related 99.9 2.1E-26 7.3E-31 182.7 -1.1 127 6-136 4-140 (147)
5 1jl1_A Ribonuclease HI; RNAse 99.9 4.3E-24 1.5E-28 170.9 8.2 126 7-136 3-146 (155)
6 3p1g_A Xenotropic murine leuke 99.9 4.4E-24 1.5E-28 172.1 7.6 124 8-135 23-158 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 7.2E-24 2.5E-28 170.0 8.2 123 7-133 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 1.2E-23 4.2E-28 170.0 5.5 125 7-135 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 2.8E-22 9.6E-27 161.4 8.7 124 7-131 6-161 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 1.3E-21 4.5E-26 153.5 7.8 122 7-133 2-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 2.4E-21 8.1E-26 151.6 8.7 121 7-132 2-136 (140)
12 2zd1_A Reverse transcriptase/r 99.8 1.5E-20 5E-25 179.0 12.0 118 4-130 435-557 (557)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.6E-20 5.4E-25 178.6 11.6 118 5-131 433-555 (555)
14 2ehg_A Ribonuclease HI; RNAse 99.8 4E-20 1.4E-24 146.7 8.8 120 9-133 2-134 (149)
15 1zbf_A Ribonuclease H-related 99.5 7.1E-15 2.4E-19 115.1 4.7 116 6-125 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.3 4.1E-12 1.4E-16 97.8 7.6 76 6-83 3-84 (134)
17 1rw3_A POL polyprotein; RNA an 83.5 0.22 7.6E-06 45.5 0.0 73 7-83 345-429 (455)
18 2zd1_B P51 RT; P51/P66, hetero 57.6 19 0.00064 32.3 6.3 73 7-80 323-404 (428)
19 2z3g_A Blasticidin-S deaminase 45.5 37 0.0012 25.1 5.2 51 21-72 28-80 (130)
20 2nx8_A TRNA-specific adenosine 44.5 30 0.001 27.1 4.8 50 21-70 37-90 (179)
21 2lnd_A De novo designed protei 44.1 46 0.0016 22.5 4.9 63 89-152 37-99 (112)
22 2fr5_A Cytidine deaminase; tet 42.0 56 0.0019 24.6 5.8 52 21-73 37-92 (146)
23 1ea9_C Cyclomaltodextrinase; h 41.5 16 0.00056 34.1 3.2 69 46-119 169-248 (583)
24 1wkq_A Guanine deaminase; doma 40.2 39 0.0013 26.1 4.7 51 20-70 32-86 (164)
25 2b3j_A TRNA adenosine deaminas 39.4 55 0.0019 24.9 5.5 50 21-70 28-81 (159)
26 2a8n_A Cytidine and deoxycytid 38.4 35 0.0012 25.5 4.2 50 21-70 25-78 (144)
27 1wwr_A TRNA adenosine deaminas 38.2 44 0.0015 25.9 4.8 50 21-70 44-97 (171)
28 1wzl_A Alpha-amylase II; pullu 35.7 16 0.00056 34.1 2.2 68 47-119 171-249 (585)
29 3alr_A Nanos protein; zinc-fin 33.5 15 0.0005 26.1 1.1 27 214-240 72-100 (106)
30 1j0h_A Neopullulanase; beta-al 33.3 19 0.00065 33.7 2.3 69 46-119 173-252 (588)
31 1z3a_A TRNA-specific adenosine 32.5 49 0.0017 25.5 4.2 50 21-70 30-83 (168)
32 1ht6_A AMY1, alpha-amylase iso 31.6 29 0.00099 30.6 3.1 72 48-119 20-98 (405)
33 1uwz_A Cytidine deaminase; CDD 30.0 1.3E+02 0.0045 22.1 6.1 52 21-73 25-80 (136)
34 3dh1_A TRNA-specific adenosine 29.1 69 0.0024 25.2 4.6 39 21-59 47-89 (189)
35 1r5t_A Cytidine deaminase; zin 28.5 1.8E+02 0.006 21.6 6.6 53 21-73 33-89 (142)
36 3n4p_A Terminase subunit UL89 28.2 2.6E+02 0.009 23.3 8.9 67 3-69 57-137 (279)
37 1lwj_A 4-alpha-glucanotransfer 27.3 38 0.0013 30.2 3.1 68 47-119 21-99 (441)
38 1gcy_A Glucan 1,4-alpha-maltot 26.6 1.3E+02 0.0046 27.3 6.8 70 48-120 35-123 (527)
39 1zja_A Trehalulose synthase; s 25.6 35 0.0012 31.5 2.6 68 47-118 30-108 (557)
40 2guy_A Alpha-amylase A; (beta- 24.8 39 0.0013 30.4 2.7 72 48-119 42-127 (478)
41 2d30_A Cytidine deaminase; pur 24.7 1.3E+02 0.0045 22.4 5.2 52 21-73 34-89 (141)
42 3oj6_A Blasticidin-S deaminase 23.8 1.2E+02 0.004 23.2 4.9 50 21-71 52-103 (158)
43 4aef_A Neopullulanase (alpha-a 23.7 23 0.00079 33.5 1.0 67 46-118 236-314 (645)
44 4aie_A Glucan 1,6-alpha-glucos 22.9 34 0.0012 31.1 1.9 68 47-118 30-108 (549)
45 1m53_A Isomaltulose synthase; 22.6 30 0.001 32.2 1.5 68 47-118 43-121 (570)
46 2g84_A Cytidine and deoxycytid 20.4 2.8E+02 0.0095 21.7 6.7 39 20-58 48-92 (197)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=1.1e-25 Score=180.04 Aligned_cols=128 Identities=23% Similarity=0.295 Sum_probs=98.9
Q ss_pred CCceEEEecCCCCCCC-----eeEEEEeCC---eEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHH
Q psy15277 6 LDSVVCFSDGSKTPNS-----TSCAYSIDK---QIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQ 77 (269)
Q Consensus 6 ~~~~~i~tDGS~~~~~-----~G~~~~~~~---~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~ 77 (269)
++.++||||||+..++ +|+|++... ...+..+...+|++.||+.|++.||+.+...+..+|.|+|||+++++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 4568999999997643 788877532 12455566678999999999999999999888899999999999999
Q ss_pred HHhcCC---------CCC--Cc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCC
Q psy15277 78 AISNLN---------SNN--SL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNT 134 (269)
Q Consensus 78 ~l~~~~---------~~~--~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~ 134 (269)
.|+++. ... +. ...+.+.+..+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 998731 111 11 2344444444433 46799999999999999999999999987653
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.92 E-value=5.1e-25 Score=175.14 Aligned_cols=125 Identities=20% Similarity=0.305 Sum_probs=92.7
Q ss_pred CCCCceEEEecCCCCCCC--eeEEEEeC-CeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 4 KYLDSVVCFSDGSKTPNS--TSCAYSID-KQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 4 ~~~~~~~i~tDGS~~~~~--~G~~~~~~-~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
-.++.++||||||+..++ .|+|++.. .......+ ..+|++.||+.|++.||+.+ ..+|.|+|||+++++.|+
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHH
Confidence 356779999999987643 78886643 22222233 47899999999999999986 489999999999999998
Q ss_pred cCC-----------CCCCc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCC
Q psy15277 81 NLN-----------SNNSL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYN 133 (269)
Q Consensus 81 ~~~-----------~~~~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~ 133 (269)
++. ...+. ...+.+.+..+......|.|.|||||+|++|||.||+||++|+..
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 751 11111 233443333333457899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.91 E-value=2.5e-25 Score=176.31 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=90.2
Q ss_pred CceEEEecCCCCCCC--eeEEEEe--CCeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 7 DSVVCFSDGSKTPNS--TSCAYSI--DKQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 7 ~~~~i~tDGS~~~~~--~G~~~~~--~~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
+.++||||||+..++ +|+|++. ++.. .+..+ ..+|++.||+.|++.||+.+.+ ..+|+|+|||+++++.|+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 579999999998753 7888653 3322 22223 3688999999999999999976 689999999999999998
Q ss_pred cCC------------CCCC-cHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCC
Q psy15277 81 NLN------------SNNS-LVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYN 133 (269)
Q Consensus 81 ~~~------------~~~~-~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~ 133 (269)
+.+ ...+ ....+.+.+..+.. ...|.|.|||||+|+++||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 721 1111 12344444433433 2579999999999999999999999988643
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.91 E-value=2.1e-26 Score=182.66 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=96.9
Q ss_pred CCceEEEecCCCCCCCeeEEEEe--CCeE--EEe-eC--CC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHH
Q psy15277 6 LDSVVCFSDGSKTPNSTSCAYSI--DKQI--HSF-NL--NK--VNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSAL 76 (269)
Q Consensus 6 ~~~~~i~tDGS~~~~~~G~~~~~--~~~~--~~~-~~--~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i 76 (269)
++.++||||||+.++.+|+|++. +... .+. .. +. ..|++.||+.|++.||+++.+.+. +|.|+|||+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 45699999999998668998653 3322 233 22 22 368999999999999999887777 999999999988
Q ss_pred HHHhcCCCCCC-cHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCCcc
Q psy15277 77 QAISNLNSNNS-LVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNTTL 136 (269)
Q Consensus 77 ~~l~~~~~~~~-~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~~~ 136 (269)
+.+.+.+..+. ....+.+.++.+.. .|.|.|||||+|++|||.||+|||+|+....+
T Consensus 83 ~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 83 FWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 88877554432 34445554444432 89999999999999999999999999876543
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.90 E-value=4.3e-24 Score=170.87 Aligned_cols=126 Identities=23% Similarity=0.285 Sum_probs=94.4
Q ss_pred CceEEEecCCCCCCC--eeEEEEe--CCeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 7 DSVVCFSDGSKTPNS--TSCAYSI--DKQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 7 ~~~~i~tDGS~~~~~--~G~~~~~--~~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
..++||||||+.+++ +|+|++. .+.. .+..+ ...|++.||+.|++.||+.+.+ ..+|.|+|||+++++.|+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 358999999998643 7888653 3321 22223 3678999999999999999976 489999999999999999
Q ss_pred cC--------CC-C--CCc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCCcc
Q psy15277 81 NL--------NS-N--NSL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNTTL 136 (269)
Q Consensus 81 ~~--------~~-~--~~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~~~ 136 (269)
++ +. . .+. ...+.+.+..+.. ...|.|.|||||+|++||+.||+|||+|+..+.+
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 72 11 1 121 2344444444443 4689999999999999999999999999877654
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.90 E-value=4.4e-24 Score=172.10 Aligned_cols=124 Identities=22% Similarity=0.254 Sum_probs=90.9
Q ss_pred ceEEEecCCCCC--CCeeEEEE--eCC-eEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy15277 8 SVVCFSDGSKTP--NSTSCAYS--IDK-QIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISNL 82 (269)
Q Consensus 8 ~~~i~tDGS~~~--~~~G~~~~--~~~-~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~~ 82 (269)
.+.||||||+.. +..|+|++ .+. ..........+|+++||+.|++.||+.+ ...+|.|+|||+++++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 389999999974 44677753 333 2222245567899999999999999998 368999999999999998322
Q ss_pred CCCCCc-HHHHHHHH-HHHhhcCCcEEEEEeCCCCC-----CccccccchhhcCCCCCCc
Q psy15277 83 NSNNSL-VPKIYSHW-LDLKSCGKNLCFLWCPSHCG-----IKGNESVDNAARNPNYNTT 135 (269)
Q Consensus 83 ~~~~~~-~~~i~~~~-~~l~~~~~~v~~~wvp~H~g-----~~gNe~AD~lAk~a~~~~~ 135 (269)
....+. ...++..+ ..+ ..+..|.|.|||||+| ++|||.||+|||+|+..+.
T Consensus 100 ~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 222222 23333322 223 3578999999999999 9999999999999886553
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.89 E-value=7.2e-24 Score=170.05 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=92.2
Q ss_pred CceEEEecCCCCCC--CeeEEEEe--CCeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 7 DSVVCFSDGSKTPN--STSCAYSI--DKQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 7 ~~~~i~tDGS~~~~--~~G~~~~~--~~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
..++||||||+.++ .+|+|++. ++.. .+..+ ...|++.||+.|++.||+.+.. ..+|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46899999999864 37888653 3322 22223 3578999999999999999865 389999999999999998
Q ss_pred c--------CCCC-C--Cc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCC
Q psy15277 81 N--------LNSN-N--SL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYN 133 (269)
Q Consensus 81 ~--------~~~~-~--~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~ 133 (269)
+ .+.. . +. ...+...+..+.. ...|.|.|||||+|++||+.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 2211 1 11 2344444444443 3689999999999999999999999999876
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.88 E-value=1.2e-23 Score=170.03 Aligned_cols=125 Identities=21% Similarity=0.191 Sum_probs=92.6
Q ss_pred CceEEEecCCCCCCC--eeEEEEeC--CeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 7 DSVVCFSDGSKTPNS--TSCAYSID--KQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 7 ~~~~i~tDGS~~~~~--~G~~~~~~--~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
..++||||||+..++ +|+|++.. +.. .+... ...|++.||+.|++.||+.+.. ...|.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHh
Confidence 468999999998643 78887642 221 12112 3578999999999999998876 358999999999999999
Q ss_pred c----------CCCCCC--c-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCCc
Q psy15277 81 N----------LNSNNS--L-VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNTT 135 (269)
Q Consensus 81 ~----------~~~~~~--~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~~ 135 (269)
+ +...++ . ...+...+..+.. ...|.|.|||||+|+++|+.||+|||+|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 8 222221 1 2344444444443 368999999999999999999999999987653
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.87 E-value=2.8e-22 Score=161.38 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=89.3
Q ss_pred CceEEEecCCCCCC--C-----eeEEEEe--C-C---eEEEeeC-CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy15277 7 DSVVCFSDGSKTPN--S-----TSCAYSI--D-K---QIHSFNL-NKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDS 72 (269)
Q Consensus 7 ~~~~i~tDGS~~~~--~-----~G~~~~~--~-~---~~~~~~~-~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS 72 (269)
..++||||||+..+ + +|+|++. . . ....+.. ....+++.||+.|+..||+.++..+ .+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 45899999999653 2 6888763 1 1 1223332 3567889999999999999887644 579999999
Q ss_pred HHHHHHHhcC--------CC---CCCc-HHHHHHHHHHHhhcCCcEEEEEeCCCCCC------ccccccchhhcCCC
Q psy15277 73 MSALQAISNL--------NS---NNSL-VPKIYSHWLDLKSCGKNLCFLWCPSHCGI------KGNESVDNAARNPN 131 (269)
Q Consensus 73 ~~~i~~l~~~--------~~---~~~~-~~~i~~~~~~l~~~~~~v~~~wvp~H~g~------~gNe~AD~lAk~a~ 131 (269)
+++++.|+.+ +. ..+. -..++..+..+......|.|.|||||+|+ +|||.||+||++|+
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 9999999752 11 1122 23444444444445678999999999995 58999999999876
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.85 E-value=1.3e-21 Score=153.49 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred CceEEEecCCCCCC--CeeEEEEe--CC---eE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHH
Q psy15277 7 DSVVCFSDGSKTPN--STSCAYSI--DK---QI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQ 77 (269)
Q Consensus 7 ~~~~i~tDGS~~~~--~~G~~~~~--~~---~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~ 77 (269)
..++||||||+..+ .+|+|++. .+ .. .+..+ ..+|++.||+.|++.||+.+.+.+.++|.|+|||+++++
T Consensus 2 ~~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~ 80 (141)
T 3hst_B 2 VKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVE 80 (141)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHH
T ss_pred cEEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHH
Confidence 45899999999864 47888653 22 12 12223 378999999999999999999988999999999999999
Q ss_pred HHhcCCC-CCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCC
Q psy15277 78 AISNLNS-NNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYN 133 (269)
Q Consensus 78 ~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~ 133 (269)
.+++.+. .++.+..+...+..+......|.|.|||+ ++|+.||.|||+|+..
T Consensus 81 ~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 81 QMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 9998653 33334455555556666678999999994 8999999999988643
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.85 E-value=2.4e-21 Score=151.58 Aligned_cols=121 Identities=14% Similarity=0.233 Sum_probs=92.7
Q ss_pred CceEEEecCCCCCC--CeeEEEEeC----CeE--EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCC----eEEEEeCcHH
Q psy15277 7 DSVVCFSDGSKTPN--STSCAYSID----KQI--HSFNLNKVNSVFSAELMAILLCIKNLKFLPHN----KFIIISDSMS 74 (269)
Q Consensus 7 ~~~~i~tDGS~~~~--~~G~~~~~~----~~~--~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~----~v~I~sDS~~ 74 (269)
..++||||||+..+ .+|+|++.. ... .+..+ ..+|++.||+.|++.||+.+.+.+.+ +|.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35899999999764 478886532 222 12223 35799999999999999999987777 9999999999
Q ss_pred HHHHHhcCCC-CCCcHHHHHHHHHHH-hhcCCcEEEEEeCCCCCCccccccchhhcCCCC
Q psy15277 75 ALQAISNLNS-NNSLVPKIYSHWLDL-KSCGKNLCFLWCPSHCGIKGNESVDNAARNPNY 132 (269)
Q Consensus 75 ~i~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~ 132 (269)
+++.+++.+. .+..+..+...+..+ .+....|.|.||| .++|+.||+|||+|+.
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAID 136 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHH
Confidence 9999999664 343344455545555 5556799999999 4999999999998764
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.83 E-value=1.5e-20 Score=178.97 Aligned_cols=118 Identities=25% Similarity=0.376 Sum_probs=88.5
Q ss_pred CCCCceEEEecCCCCCCC--eeEEEEeC-CeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy15277 4 KYLDSVVCFSDGSKTPNS--TSCAYSID-KQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAIS 80 (269)
Q Consensus 4 ~~~~~~~i~tDGS~~~~~--~G~~~~~~-~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~ 80 (269)
-.++.++||||||+..++ .|+|++.. +....... ..+||+.||+.|++.||+.+ ..++.|+|||++|+++++
T Consensus 435 p~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~ 509 (557)
T 2zd1_A 435 PIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQ 509 (557)
T ss_dssp CCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHT
T ss_pred CCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHh
Confidence 356779999999987643 77786542 22222232 47899999999999999998 689999999999999999
Q ss_pred cCCCCC--CcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCC
Q psy15277 81 NLNSNN--SLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNP 130 (269)
Q Consensus 81 ~~~~~~--~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a 130 (269)
++...+ ++..++.+ .+.. ...|.|.|||||+|++|||.||+||++|
T Consensus 510 ~~~~~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 510 AQPDKSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp TCCSEESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred cCCccCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 976542 23333333 3333 4689999999999999999999999986
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.83 E-value=1.6e-20 Score=178.65 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=90.6
Q ss_pred CCCceEEEecCCCCCCC--eeEEEEeC-CeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc
Q psy15277 5 YLDSVVCFSDGSKTPNS--TSCAYSID-KQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAISN 81 (269)
Q Consensus 5 ~~~~~~i~tDGS~~~~~--~G~~~~~~-~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l~~ 81 (269)
.++.+++|||||+..++ .|+|++.. ........ ..+||+.||+.|++.||+. +..++.|+|||++|++.+++
T Consensus 433 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 433 IPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 46679999999998653 67886542 22223333 4688999999999999998 57899999999999999998
Q ss_pred CCCCC--CcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCC
Q psy15277 82 LNSNN--SLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPN 131 (269)
Q Consensus 82 ~~~~~--~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~ 131 (269)
+.... ++..++.+ .+ .....|.|.|||||+|++|||.||+|||+|+
T Consensus 508 ~~~~~~~~l~~~~~~---~~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTESESKIVNQIIE---EM-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSEESCHHHHHHHH---HH-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHH---Hh-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 65332 23333333 22 3467899999999999999999999999985
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.81 E-value=4e-20 Score=146.66 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=90.0
Q ss_pred eEEEecCCCC-C--CCeeE-EEEe--C-CeEEEe--eCC---CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHH
Q psy15277 9 VVCFSDGSKT-P--NSTSC-AYSI--D-KQIHSF--NLN---KVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSAL 76 (269)
Q Consensus 9 ~~i~tDGS~~-~--~~~G~-~~~~--~-~~~~~~--~~~---~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i 76 (269)
++||||||+. . +++|+ |++. + ...... ..+ ...|++.||+.|++.||+.+...+..+|.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999997 3 45775 7543 2 222222 222 37899999999999999999988889999999999999
Q ss_pred HHHhcCCCC-CCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCC
Q psy15277 77 QAISNLNSN-NSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYN 133 (269)
Q Consensus 77 ~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~ 133 (269)
+.+++++.. ++....+.+.+..+.+.. .|.|.|||+ ++|+.||+||++|+..
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 999997543 344455555444444333 599999998 5999999999988743
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.51 E-value=7.1e-15 Score=115.07 Aligned_cols=116 Identities=13% Similarity=0.002 Sum_probs=82.7
Q ss_pred CCceEEEecCCCCCC--CeeEEEEeC---CeEE-EeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHH
Q psy15277 6 LDSVVCFSDGSKTPN--STSCAYSID---KQIH-SFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAI 79 (269)
Q Consensus 6 ~~~~~i~tDGS~~~~--~~G~~~~~~---~~~~-~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l 79 (269)
++.+.||||||+..+ .+|+|++.. .... +..+ ..+|++.||++|++.||+.+.+.+. +|.|+|||+.+++.+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 456899999999764 478887653 2221 1122 2578999999999999999998777 999999999999999
Q ss_pred hcCCCCC----C-cHHHHHHHHH----HHhhcCCcEEEEEeCCCCCCccccccch
Q psy15277 80 SNLNSNN----S-LVPKIYSHWL----DLKSCGKNLCFLWCPSHCGIKGNESVDN 125 (269)
Q Consensus 80 ~~~~~~~----~-~~~~i~~~~~----~l~~~~~~v~~~wvp~H~g~~gNe~AD~ 125 (269)
.+..... + ....+.+.+. .+.. ..+....|+-|++.-||..||.
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 9866221 1 2334443332 2333 4556666888888899999995
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.31 E-value=4.1e-12 Score=97.79 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=58.0
Q ss_pred CCceEEEecCCCCCCC--eeEE-EEeC--CeE-EEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHH
Q psy15277 6 LDSVVCFSDGSKTPNS--TSCA-YSID--KQI-HSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDSMSALQAI 79 (269)
Q Consensus 6 ~~~~~i~tDGS~~~~~--~G~~-~~~~--~~~-~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~~~i~~l 79 (269)
++...||||||+..+. .|+| |+.. ... .+..+ ..+||++||++|++.||+.+.+.+.. +.|+|||++|++.+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 5678899999997653 7884 4432 222 22223 36899999999999999999886654 89999999999999
Q ss_pred hcCC
Q psy15277 80 SNLN 83 (269)
Q Consensus 80 ~~~~ 83 (269)
.+..
T Consensus 81 ~~~~ 84 (134)
T 4htu_A 81 KDKK 84 (134)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8743
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=83.52 E-value=0.22 Score=45.46 Aligned_cols=73 Identities=12% Similarity=-0.001 Sum_probs=46.9
Q ss_pred CceEEEecCCCCCCCeeEEEEe-C---C-e---EEEeeCC---CCCchHHHHHHHHHHHHHHhhcC-CCCeEEEEeCcHH
Q psy15277 7 DSVVCFSDGSKTPNSTSCAYSI-D---K-Q---IHSFNLN---KVNSVFSAELMAILLCIKNLKFL-PHNKFIIISDSMS 74 (269)
Q Consensus 7 ~~~~i~tDGS~~~~~~G~~~~~-~---~-~---~~~~~~~---~~~s~~~aEl~Ai~~aL~~~~~~-~~~~v~I~sDS~~ 74 (269)
..+.+|||+|. .++|+ |.. . . . +.+..+. ..-+++..|++||..|++..... ....++|+||+.
T Consensus 345 ~~~~l~~DAS~--~~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 345 KPFELFVDEKQ--GYAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CTTSCEEEEEE--CSSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CcEEEEEeccC--Cccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 34789999984 33343 332 1 1 1 1222232 34567899999999999977653 346899999997
Q ss_pred HHHHHhcCC
Q psy15277 75 ALQAISNLN 83 (269)
Q Consensus 75 ~i~~l~~~~ 83 (269)
++..+.+..
T Consensus 421 ~~~~l~~~~ 429 (455)
T 1rw3_A 421 VEALVKQPP 429 (455)
T ss_dssp TTTTSSSTT
T ss_pred HHHHhCCCc
Confidence 666666543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=57.60 E-value=19 Score=32.32 Aligned_cols=73 Identities=4% Similarity=-0.098 Sum_probs=42.8
Q ss_pred CceEEEecCCCCCCCeeEEEEeC--CeEEEe--eCCCCCchHHHHHHH-HHHHHHHhhc----CCCCeEEEEeCcHHHHH
Q psy15277 7 DSVVCFSDGSKTPNSTSCAYSID--KQIHSF--NLNKVNSVFSAELMA-ILLCIKNLKF----LPHNKFIIISDSMSALQ 77 (269)
Q Consensus 7 ~~~~i~tDGS~~~~~~G~~~~~~--~~~~~~--~~~~~~s~~~aEl~A-i~~aL~~~~~----~~~~~v~I~sDS~~~i~ 77 (269)
..+.++||+|.. +..|+.+..+ ..+.+. ........+.-|++| |..||+.... ..+..++++||.+..-.
T Consensus 323 ~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~~ 401 (428)
T 2zd1_B 323 KDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETW 401 (428)
T ss_dssp SCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHHH
T ss_pred CCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHHH
Confidence 348999999942 2223222222 223232 223445566777777 9999986543 23467788999986544
Q ss_pred HHh
Q psy15277 78 AIS 80 (269)
Q Consensus 78 ~l~ 80 (269)
...
T Consensus 402 ~~~ 404 (428)
T 2zd1_B 402 WTE 404 (428)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=45.55 E-value=37 Score=25.07 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=34.4
Q ss_pred CeeEEEEe--CCeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy15277 21 STSCAYSI--DKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISDS 72 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS 72 (269)
.+|++++. +..+.............||..||..|+.. -....+.+++++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 48988874 34444444443444677999999999875 22356788888875
No 20
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=44.46 E-value=30 Score=27.11 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=31.7
Q ss_pred CeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 21 STSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
.+|+.+|.++.....+... ......||+.||..|.+..........++|+
T Consensus 37 pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 37 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 4888888755444333221 1124579999999998865444456677777
No 21
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.06 E-value=46 Score=22.47 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCCccccccchhhcCCCCCCccccCChhhhHHHHHHHH
Q psy15277 89 VPKIYSHWLDLKSCGKNLCFLWCPSHCGIKGNESVDNAARNPNYNTTLRKCTSDDFRPIISTII 152 (269)
Q Consensus 89 ~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~gNe~AD~lAk~a~~~~~~~~~~~~~~k~~ik~~~ 152 (269)
.+.|++.++.+...|..+.+ +|-|-+-..-||.-.++-|++..-..+....+.++-+.+++-+
T Consensus 37 sqdirdiiksmkdngkplvv-fvngasqndvnefqneakkegvsydvlkstdpeeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVV-FVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEE-EECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEEE-EecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHH
Confidence 67888888888888877654 6887766667777777777776544333344566666655543
No 22
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=42.04 E-value=56 Score=24.64 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=35.0
Q ss_pred CeeEEEEe--CCeEEEeeCCC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcH
Q psy15277 21 STSCAYSI--DKQIHSFNLNK--VNSVFSAELMAILLCIKNLKFLPHNKFIIISDSM 73 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~ 73 (269)
.+|++++. +..+....... ......||..||..|... -....+.+.|++|..
T Consensus 37 ~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 58998874 34444444432 223467999999999976 334567899998853
No 23
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=41.53 E-value=16 Score=34.11 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCC
Q psy15277 46 AELMAILLCIKNLKFLPHNKFIII--SDSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSH 114 (269)
Q Consensus 46 aEl~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H 114 (269)
+-+.+|...|.++.++|...|.+. .++.+ ..++.. -+-...+.+.+..+.++|+.|-+-|||.|
T Consensus 169 Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 243 (583)
T 1ea9_C 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFKATT-----NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNH 243 (583)
T ss_dssp CCHHHHHHTHHHHHHHTCSEEEECCCSSCSS-----SSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSB
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccc
Confidence 347788888999999888877764 22210 111111 11257778888899999999999999999
Q ss_pred CCCcc
Q psy15277 115 CGIKG 119 (269)
Q Consensus 115 ~g~~g 119 (269)
++...
T Consensus 244 ~~~~~ 248 (583)
T 1ea9_C 244 SGRTF 248 (583)
T ss_dssp CCTTT
T ss_pred CCCcc
Confidence 98643
No 24
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=40.15 E-value=39 Score=26.07 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=31.5
Q ss_pred CCeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 20 NSTSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 20 ~~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
..+|+.++.++...+.+... ....-.||+.||..|.+..........++|+
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 35898888655444333221 1124569999999998765444456666776
No 25
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=39.44 E-value=55 Score=24.92 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=31.9
Q ss_pred CeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 21 STSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
.+|+.++.+......+... ......||..||..|.+.......+..++|+
T Consensus 28 pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 28 PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 4888888754443332221 1234579999999998865444566777776
No 26
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=38.43 E-value=35 Score=25.47 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=30.1
Q ss_pred CeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 21 STSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
.+|+.++.++.....+... ......||..||..|.+.......+..++|+
T Consensus 25 ~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 25 PIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 4888888754443333221 1124569999999998764433345556665
No 27
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=38.16 E-value=44 Score=25.94 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=31.5
Q ss_pred CeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 21 STSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
.+|+.++.++.....+... ......||..||..|.+..........++|+
T Consensus 44 pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 44 PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 4888888754444332221 1124569999999998865444456677776
No 28
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=35.72 E-value=16 Score=34.11 Aligned_cols=68 Identities=13% Similarity=0.023 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCCC
Q psy15277 47 ELMAILLCIKNLKFLPHNKFIII--SDSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSHC 115 (269)
Q Consensus 47 El~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~ 115 (269)
-+.+|..-|.++.++|...|.+. .++.+ ..++.. -+-...+.+.+..+.++|+.|-+-||+.|+
T Consensus 171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 171 DLKGVIDRLPYLEELGVTALYFTPIFASPS-----HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 47788888999999887776653 12210 111111 122577888888999999999999999999
Q ss_pred CCcc
Q psy15277 116 GIKG 119 (269)
Q Consensus 116 g~~g 119 (269)
+...
T Consensus 246 ~~~~ 249 (585)
T 1wzl_A 246 GDQF 249 (585)
T ss_dssp CTTS
T ss_pred CCcc
Confidence 8643
No 29
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=33.50 E-value=15 Score=26.15 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.6
Q ss_pred CCc-cCCCCcccchh-ccCcchHHHhhhC
Q psy15277 214 PSC-SCGEPLSVQHL-LSCPSHDQARSRL 240 (269)
Q Consensus 214 p~C-~Cg~~et~~Hi-~~Cp~~~~~R~~l 240 (269)
-.| .||+..+-.|. -.||+.......+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~sv 100 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCSV 100 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCce
Confidence 689 99999999999 9999987655444
No 30
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=33.34 E-value=19 Score=33.68 Aligned_cols=69 Identities=14% Similarity=0.036 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCC
Q psy15277 46 AELMAILLCIKNLKFLPHNKFIII--SDSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSH 114 (269)
Q Consensus 46 aEl~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H 114 (269)
+-+.+|...|.++.++|...|.+. .++.+ ..+... -+-...+.+.+..+.++|+.|-+-||+.|
T Consensus 173 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 247 (588)
T 1j0h_A 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNH 247 (588)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCc
Confidence 357889899999999888777654 12211 111111 12257778888899999999999999999
Q ss_pred CCCcc
Q psy15277 115 CGIKG 119 (269)
Q Consensus 115 ~g~~g 119 (269)
++...
T Consensus 248 ~~~~~ 252 (588)
T 1j0h_A 248 CGYEF 252 (588)
T ss_dssp CCTTC
T ss_pred Ccccc
Confidence 98654
No 31
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=32.50 E-value=49 Score=25.53 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=30.1
Q ss_pred CeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhhcCCCCeEEEEe
Q psy15277 21 STSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLKFLPHNKFIIIS 70 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~s 70 (269)
.+|+.++.+......+... ......||..||..|.+..........++|+
T Consensus 30 pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 30 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 4888888655443332221 1123579999999998765443444556665
No 32
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=31.63 E-value=29 Score=30.62 Aligned_cols=72 Identities=10% Similarity=-0.033 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE--eCcH----HHHHHHhcCC-CCCCcHHHHHHHHHHHhhcCCcEEEEEeCCCCCCcc
Q psy15277 48 LMAILLCIKNLKFLPHNKFIII--SDSM----SALQAISNLN-SNNSLVPKIYSHWLDLKSCGKNLCFLWCPSHCGIKG 119 (269)
Q Consensus 48 l~Ai~~aL~~~~~~~~~~v~I~--sDS~----~~i~~l~~~~-~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~g~~g 119 (269)
+.+|..-|.++.+.|...|.+- .++. +.+.-..... +.-+-...+.+.+..+.++|+.|-+-+|+-|++...
T Consensus 20 ~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 98 (405)
T 1ht6_A 20 YNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADY 98 (405)
T ss_dssp HHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcccCCC
Confidence 6788888899988887777653 1111 0000000000 111235677788889999999999999999998653
No 33
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=29.98 E-value=1.3e+02 Score=22.12 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=34.6
Q ss_pred CeeEEEEe--CCeEEEeeCCC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcH
Q psy15277 21 STSCAYSI--DKQIHSFNLNK--VNSVFSAELMAILLCIKNLKFLPHNKFIIISDSM 73 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~ 73 (269)
.+|++++. +..+....... ..-...||..||..|... -....+.++|++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 48888875 34443443332 223567999999999886 334577889998753
No 34
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=29.13 E-value=69 Score=25.22 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.5
Q ss_pred CeeEEEEeCCeEEEeeCCC----CCchHHHHHHHHHHHHHHhh
Q psy15277 21 STSCAYSIDKQIHSFNLNK----VNSVFSAELMAILLCIKNLK 59 (269)
Q Consensus 21 ~~G~~~~~~~~~~~~~~~~----~~s~~~aEl~Ai~~aL~~~~ 59 (269)
.+|+.+|.++.....+... ......||+.||..|.+.+.
T Consensus 47 pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 47 PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 4888888765544433321 23356799999999987643
No 35
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=28.54 E-value=1.8e+02 Score=21.63 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=35.3
Q ss_pred CeeEEEEe--CCeEEEeeCCC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcH
Q psy15277 21 STSCAYSI--DKQIHSFNLNK--VNSVFSAELMAILLCIKNLKFLPHNKFIIISDSM 73 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~ 73 (269)
.+|+++.. +..+....... ......||..||..|+..-.....+.+.|.+|..
T Consensus 33 ~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 33 RVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp CEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred CEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 58988874 34444444442 2245679999999998764332278899999863
No 36
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=28.20 E-value=2.6e+02 Score=23.31 Aligned_cols=67 Identities=19% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCCCCceEEEecCCCCCC----CeeEEEEe--CCeEE-----Ee---eCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEE
Q psy15277 3 SKYLDSVVCFSDGSKTPN----STSCAYSI--DKQIH-----SF---NLNKVNSVFSAELMAILLCIKNLKFLPHNKFII 68 (269)
Q Consensus 3 ~~~~~~~~i~tDGS~~~~----~~G~~~~~--~~~~~-----~~---~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I 68 (269)
+.....+.||.|=+...| |+|.|++. ++... -+ .|.+.++..-||..+-..+=-+++--..+.|.|
T Consensus 57 ~~L~~tLYVYIDPAfT~N~~ASGTGIaavg~~~~~~Ii~GlEHfFL~~LTg~s~~~Ia~Ca~~~i~~vl~lHp~~~~vrv 136 (279)
T 3n4p_A 57 DYFGKTLYVYLDPAFTTNRKASGTGVAAVGAYRHQFLIYGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRI 136 (279)
T ss_dssp TTBCCEEEEEEECC--------CEEEEEEEEETTEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred hccCCeEEEEECCccccCCccccccEEEEEEecCcEEEEecHHHhHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEE
Confidence 457788999999998775 67888663 44321 12 245666677788776654433333223444444
Q ss_pred E
Q psy15277 69 I 69 (269)
Q Consensus 69 ~ 69 (269)
.
T Consensus 137 a 137 (279)
T 3n4p_A 137 A 137 (279)
T ss_dssp E
T ss_pred E
Confidence 3
No 37
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=27.34 E-value=38 Score=30.18 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCCC
Q psy15277 47 ELMAILLCIKNLKFLPHNKFIII--SDSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSHC 115 (269)
Q Consensus 47 El~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~ 115 (269)
-+.+|..-|.++.++|...|.+- ..|.+ ..++.. -+-...+.+.+..+.++|+.|-+-+|+-|+
T Consensus 21 d~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~ 95 (441)
T 1lwj_A 21 DFRGLKNAVSYLKELGIDFVWLMPVFSSIS-----FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHT 95 (441)
T ss_dssp CHHHHHHTHHHHHHTTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTBC
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCCCcCCCC-----CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 36788888899988887766642 12210 011111 123577888888999999999999999999
Q ss_pred CCcc
Q psy15277 116 GIKG 119 (269)
Q Consensus 116 g~~g 119 (269)
+...
T Consensus 96 ~~~~ 99 (441)
T 1lwj_A 96 GFLH 99 (441)
T ss_dssp CTTC
T ss_pred cCch
Confidence 8754
No 38
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=26.57 E-value=1.3e+02 Score=27.35 Aligned_cols=70 Identities=9% Similarity=-0.051 Sum_probs=48.3
Q ss_pred H-HHHHHHHHHhhcCCCCeEEEE--e----------Cc----HHHHHHHhcCC--CCCCcHHHHHHHHHHHhhcCCcEEE
Q psy15277 48 L-MAILLCIKNLKFLPHNKFIII--S----------DS----MSALQAISNLN--SNNSLVPKIYSHWLDLKSCGKNLCF 108 (269)
Q Consensus 48 l-~Ai~~aL~~~~~~~~~~v~I~--s----------DS----~~~i~~l~~~~--~~~~~~~~i~~~~~~l~~~~~~v~~ 108 (269)
+ .+|..-|.++.++|...|.|- . +| -+. .-... +.-+-...+.+.+..+.++|++|-+
T Consensus 35 ~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~Vil 111 (527)
T 1gcy_A 35 WYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLY 111 (527)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 6 889999999999887776653 1 11 111 00111 1122367888888899999999999
Q ss_pred EEeCCCCCCccc
Q psy15277 109 LWCPSHCGIKGN 120 (269)
Q Consensus 109 ~wvp~H~g~~gN 120 (269)
-+|+-|++....
T Consensus 112 D~V~NHt~~~~~ 123 (527)
T 1gcy_A 112 DVVPNHMNRGYP 123 (527)
T ss_dssp EECCSBCCTTCS
T ss_pred EEeecCcCCCCC
Confidence 999999987544
No 39
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=25.58 E-value=35 Score=31.51 Aligned_cols=68 Identities=16% Similarity=0.030 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCCC
Q psy15277 47 ELMAILLCIKNLKFLPHNKFIII--SDSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSHC 115 (269)
Q Consensus 47 El~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~ 115 (269)
-+.||..-|.++.++|...|.+. .+|.. -..++.. -+-...+.+.+..+.++|+.|-+-+|+-|+
T Consensus 30 dl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~----~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHt 105 (557)
T 1zja_A 30 DFKGLTEKLDYLKGLGIDAIWINPHYASPN----TDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHS 105 (557)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 36788888899988887766642 11100 0011111 123577778788899999999999999999
Q ss_pred CCc
Q psy15277 116 GIK 118 (269)
Q Consensus 116 g~~ 118 (269)
+..
T Consensus 106 s~~ 108 (557)
T 1zja_A 106 SDQ 108 (557)
T ss_dssp CTT
T ss_pred ccc
Confidence 853
No 40
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=24.81 E-value=39 Score=30.42 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHH--hc-CC---------CCCCcHHHHHHHHHHHhhcCCcEEEEEeCC
Q psy15277 48 LMAILLCIKNLKFLPHNKFIII--SDSMSALQAI--SN-LN---------SNNSLVPKIYSHWLDLKSCGKNLCFLWCPS 113 (269)
Q Consensus 48 l~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l--~~-~~---------~~~~~~~~i~~~~~~l~~~~~~v~~~wvp~ 113 (269)
+.+|..-|.++.++|...|.+- .++...-... .. +. +.-+-...+.+.+..+.++|+.|-+-+|+-
T Consensus 42 ~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 42 WQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp HHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 6788888999999887766652 1110000000 00 00 111225778888889999999999999999
Q ss_pred CCCCcc
Q psy15277 114 HCGIKG 119 (269)
Q Consensus 114 H~g~~g 119 (269)
|++..+
T Consensus 122 H~~~~~ 127 (478)
T 2guy_A 122 HMGYDG 127 (478)
T ss_dssp BCCEEB
T ss_pred cCCCCC
Confidence 998644
No 41
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=24.73 E-value=1.3e+02 Score=22.42 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=35.3
Q ss_pred CeeEEEEe--CCeEEEeeCCC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcH
Q psy15277 21 STSCAYSI--DKQIHSFNLNK--VNSVFSAELMAILLCIKNLKFLPHNKFIIISDSM 73 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~~--~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sDS~ 73 (269)
.+|++++. +..+....+.. ......||..||..|+..- ....+.|.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 48988874 34444454442 3345679999999998753 23467889999863
No 42
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=23.79 E-value=1.2e+02 Score=23.22 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=32.0
Q ss_pred CeeEEEEe--CCeEEEeeCCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q psy15277 21 STSCAYSI--DKQIHSFNLNKVNSVFSAELMAILLCIKNLKFLPHNKFIIISD 71 (269)
Q Consensus 21 ~~G~~~~~--~~~~~~~~~~~~~s~~~aEl~Ai~~aL~~~~~~~~~~v~I~sD 71 (269)
.+|+++.. +..+.............||-.||..|+..-. .....+.+.+|
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs~G~-~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAAAGA-TKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHHhCC-CceEEEEEEeC
Confidence 58999875 3445455554444456799999999986432 23455666666
No 43
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=23.67 E-value=23 Score=33.46 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEe--CcHHHHHHHhcC-CCC------C---CcHHHHHHHHHHHhhcCCcEEEEEeCC
Q psy15277 46 AELMAILLCIKNLKFLPHNKFIIIS--DSMSALQAISNL-NSN------N---SLVPKIYSHWLDLKSCGKNLCFLWCPS 113 (269)
Q Consensus 46 aEl~Ai~~aL~~~~~~~~~~v~I~s--DS~~~i~~l~~~-~~~------~---~~~~~i~~~~~~l~~~~~~v~~~wvp~ 113 (269)
+-+.||..-|.++.++|...|.+-= .|. .+. ... . +-...+.+.+..+.++|+.|-+-+|+.
T Consensus 236 Gdl~Gi~~kLdYLk~LGvt~I~L~Pif~s~------~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 309 (645)
T 4aef_A 236 GDLIGIKEKIDHLVNLGINAIYLTPIFSSL------TYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFH 309 (645)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEEES------STTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCCCCC------CCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEeccc
Confidence 3488999999999999877766521 110 111 110 1 125677777789999999999999999
Q ss_pred CCCCc
Q psy15277 114 HCGIK 118 (269)
Q Consensus 114 H~g~~ 118 (269)
|++..
T Consensus 310 Hts~~ 314 (645)
T 4aef_A 310 HTSFF 314 (645)
T ss_dssp BCCTT
T ss_pred ccccC
Confidence 99854
No 44
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=22.87 E-value=34 Score=31.15 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEe--CcHHHHHHHhcCCCC---------CCcHHHHHHHHHHHhhcCCcEEEEEeCCCC
Q psy15277 47 ELMAILLCIKNLKFLPHNKFIIIS--DSMSALQAISNLNSN---------NSLVPKIYSHWLDLKSCGKNLCFLWCPSHC 115 (269)
Q Consensus 47 El~Ai~~aL~~~~~~~~~~v~I~s--DS~~~i~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~wvp~H~ 115 (269)
-+.||..-|.++.++|...|.+.= +|.+ -..++.. -+-...+.+.+..+.++|+.|-+-+|+-|+
T Consensus 30 dl~Gi~~kLdYLk~LGvt~I~L~Pi~~~~~----~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHt 105 (549)
T 4aie_A 30 DLQGIISRLDYLEKLGIDAIWLSPVYQSPG----VDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIVMDLVVNHT 105 (549)
T ss_dssp CHHHHHTTHHHHHHHTCSEEEECCCEECCC----TTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHhhHHHHHCCCCEEEeCCCcCCCC----CCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECccCC
Confidence 377888889999998877776421 1100 0011111 112567888888999999999999999999
Q ss_pred CCc
Q psy15277 116 GIK 118 (269)
Q Consensus 116 g~~ 118 (269)
+..
T Consensus 106 s~~ 108 (549)
T 4aie_A 106 SDQ 108 (549)
T ss_dssp CTT
T ss_pred cCC
Confidence 854
No 45
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=22.56 E-value=30 Score=32.16 Aligned_cols=68 Identities=18% Similarity=0.075 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCCC---------CcHHHHHHHHHHHhhcCCcEEEEEeCCCC
Q psy15277 47 ELMAILLCIKNLKFLPHNKFIII--SDSMSALQAISNLNSNN---------SLVPKIYSHWLDLKSCGKNLCFLWCPSHC 115 (269)
Q Consensus 47 El~Ai~~aL~~~~~~~~~~v~I~--sDS~~~i~~l~~~~~~~---------~~~~~i~~~~~~l~~~~~~v~~~wvp~H~ 115 (269)
-+.+|..-|.++.++|...|.+- ..|.. -..++... +-...+.+.+..+.++|+.|-+-+|+.|+
T Consensus 43 dl~gi~~~LdyL~~LGv~~I~l~Pi~~~~~----~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~ 118 (570)
T 1m53_A 43 DIRGIIEKLDYLKSLGIDAIWINPHYDSPN----TDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHT 118 (570)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 47788888999998887777653 11100 00122111 12567777788899999999999999999
Q ss_pred CCc
Q psy15277 116 GIK 118 (269)
Q Consensus 116 g~~ 118 (269)
+..
T Consensus 119 s~~ 121 (570)
T 1m53_A 119 SDQ 121 (570)
T ss_dssp CTT
T ss_pred ccc
Confidence 853
No 46
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=20.35 E-value=2.8e+02 Score=21.71 Aligned_cols=39 Identities=23% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCeeEEEEe-C-CeEEEeeCC----CCCchHHHHHHHHHHHHHHh
Q psy15277 20 NSTSCAYSI-D-KQIHSFNLN----KVNSVFSAELMAILLCIKNL 58 (269)
Q Consensus 20 ~~~G~~~~~-~-~~~~~~~~~----~~~s~~~aEl~Ai~~aL~~~ 58 (269)
..+|+.+|. + +.....+.. .......||+.||..|-+..
T Consensus 48 ~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 92 (197)
T 2g84_A 48 GPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL 92 (197)
T ss_dssp CSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc
Confidence 447888886 3 343333322 23345679999999887754
Done!