BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15286
(707 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 183/347 (52%), Gaps = 27/347 (7%)
Query: 17 DEMCGQEQAFRSWAPEVFNVACETFCLDDDETLS--DATQVISSVTLNASTVRFLPMTTA 74
DE+CGQE+AFR+WA +VF AC+ FC+ DD + + + + + + + R + A
Sbjct: 177 DELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDRSWKRNKFRLTYVAEA 236
Query: 75 DSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQM--RKPHDCAYEPGDHVGIF 132
L GLS VH ++V L+ + NL S +R+T+ +++ + Y+PGDH+G+F
Sbjct: 237 PDLTQGLSNVHKKRVSAARLLSRQNLQ-SPKSSRSTIFVRLHTNGNQELQYQPGDHLGVF 295
Query: 133 ASNKWDLVSGILARLNLGGIDPDEP-----MELQVLSETHTSTEVIKSWKPHERLPRASL 187
N DLV+ ++ RL D P +++++L E +T+ VI +WK RLP ++
Sbjct: 296 PGNHEDLVNALIERLE------DAPPANHVVKVEMLEERNTALGVISNWKDESRLPPCTI 349
Query: 188 RTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAAYEDWRHWRFPHLLEVL 247
YLDI +++ L +L+ YE+W+ + P ++EVL
Sbjct: 350 FQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPTMVEVL 409
Query: 248 EQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAA 307
E+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+V+Y T+
Sbjct: 410 EEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGV 469
Query: 308 YEDWRHWRFPHLLEVLEQF----PSIHLP-----PALLVAQLTPLQP 345
W + +V+ F PS HLP P +LV T + P
Sbjct: 470 CSSWLNR--IQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAP 514
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 92/141 (65%), Gaps = 6/141 (4%)
Query: 556 KFGLQELGK----MTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYV 610
+F +Q G M L FGC+ +D +Y +E + ++ V + + A SREP PK YV
Sbjct: 523 QFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYV 582
Query: 611 QDLMKKE-ASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLR 669
QD+++++ A +YR L ++GGH YVCGD TMA V + ++ + +G L+E++A + R
Sbjct: 583 QDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISR 642
Query: 670 LRDENRYHEDIFGITLRTAEV 690
LRD+NRYHEDIFG+TLRT EV
Sbjct: 643 LRDDNRYHEDIFGVTLRTYEV 663
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 308 YEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAV 367
YE+W+ + P ++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+
Sbjct: 394 YEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAI 453
Query: 368 VTYRTQ-GLSKVH 379
V+Y T+ G VH
Sbjct: 454 VSYHTRDGEGPVH 466
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 37/165 (22%)
Query: 359 NEIHLT-VAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQKDSS 417
N+ LT VA TQGLS VH ++V L+ + NL S
Sbjct: 226 NKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNL--------------------QSP 265
Query: 418 RESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEP 477
+ S + V T G Q + Y+PGDH+G+F N DLV+ ++ RL D P
Sbjct: 266 KSSRSTIFVRLHTNGNQ-----ELQYQPGDHLGVFPGNHEDLVNALIERLE------DAP 314
Query: 478 -----MELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDI 517
+++++L E +T+ VI +WK RLP ++ YLDI
Sbjct: 315 PANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDI 359
>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
FadNADP+ Domain At 1.9a Resolution
Length = 435
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 15/293 (5%)
Query: 64 STVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQM--RKPHDC 121
+ R + A L GLS VH ++V L+ + NL S +R+T+ +++ +
Sbjct: 5 NKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQ-SPKSSRSTIFVRLHTNGNQEL 63
Query: 122 AYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHER 181
Y+PGDH+G+F N DLV+ ++ RL + +++++L E +T+ VI +WK R
Sbjct: 64 QYQPGDHLGVFPGNHEDLVNALIERLE-DAPPANHVVKVEMLEERNTALGVISNWKDESR 122
Query: 182 LPRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAAYEDWRHWRFP 241
LP ++ YLDI +++ L +L+ YE+W+ + P
Sbjct: 123 LPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNP 182
Query: 242 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASI 301
++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+V+Y T+
Sbjct: 183 TMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEG 242
Query: 302 HSDSAAYEDWRHWRFPHLLEVLEQF----PSIHLP-----PALLVAQLTPLQP 345
W + R +V+ F PS HLP P +LV T + P
Sbjct: 243 PVHHGVCSSWLN-RI-QADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAP 293
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 86/134 (64%), Gaps = 6/134 (4%)
Query: 556 KFGLQELG----KMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYV 610
+F +Q G M L FGC+ +D +Y +E + ++ V + + A SREP PK YV
Sbjct: 302 QFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYV 361
Query: 611 QDLMKKE-ASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLR 669
QD+++++ A +YR L ++GGH YVCGD TMA V + ++ + +G L+E++A + R
Sbjct: 362 QDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISR 421
Query: 670 LRDENRYHEDIFGI 683
LRD+NRYHEDIFG+
Sbjct: 422 LRDDNRYHEDIFGV 435
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 308 YEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAV 367
YE+W+ + P ++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+
Sbjct: 173 YEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAI 232
Query: 368 VTYRTQ-GLSKVH 379
V+Y T+ G VH
Sbjct: 233 VSYHTRDGEGPVH 245
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 359 NEIHLT-VAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQKDSS 417
N+ LT VA TQGLS VH ++V L+ + NL S
Sbjct: 5 NKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNL--------------------QSP 44
Query: 418 RESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEP 477
+ S + V T G Q + Y+PGDH+G+F N DLV+ ++ RL +
Sbjct: 45 KSSRSTIFVRLHTNGNQ-----ELQYQPGDHLGVFPGNHEDLVNALIERLE-DAPPANHV 98
Query: 478 MELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXD 537
+++++L E +T+ VI +WK RLP ++ YLDI
Sbjct: 99 VKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEK 158
Query: 538 DQEILTLLATKMQNSRVIKFG 558
+++ L +L+ +Q K+G
Sbjct: 159 EKQRLLVLSKGLQEYEEWKWG 179
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 121/297 (40%), Gaps = 20/297 (6%)
Query: 17 DEMCGQEQAFRSWAPEVFNVACETFCLD--DDETLSDATQVISSVTLNASTVRFLPMTTA 74
D+ E+ F +W + + CE F ++ +E+ +++ ++A+ V M
Sbjct: 148 DDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRL 207
Query: 75 DSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMR-KPHDCAYEPGDHVGIFA 133
S ++ + + L +Q R + +++ YE GDHV ++
Sbjct: 208 KSYENQKPPFDAKNPFLAAVTTNRKL--NQGTERHLMHLELDISDSKIRYESGDHVAVYP 265
Query: 134 SNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSR 193
+N LV+ + L G D D M L L E +S K H S RT L+
Sbjct: 266 ANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFPCPTSYRTALTY 314
Query: 194 YLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHWRFPHLLEVLEQ 249
YLDI +QE+L +A+ S Y W H+L +L+
Sbjct: 315 YLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQD 374
Query: 250 FPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSA 306
PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+ I+ A
Sbjct: 375 CPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGEA 431
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 496 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 554
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 555 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 613
Query: 678 EDIF 681
D++
Sbjct: 614 LDVW 617
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+
Sbjct: 367 HILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 422
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 255 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 303
Query: 503 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLAT 547
S RT L+ YLDI +QE+L +A+
Sbjct: 304 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMAS 348
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 86/199 (43%), Gaps = 17/199 (8%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 274 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 322
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
S RT L+ YLDI +QE+L +A+ S Y W
Sbjct: 323 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVE 382
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+
Sbjct: 383 ARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKA 442
Query: 299 ASIHSDSAAYEDWRHWRFP 317
I+ A +W + P
Sbjct: 443 GRINKGVAT--NWLRAKEP 459
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 515 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 573
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 574 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 632
Query: 678 EDIF 681
D++
Sbjct: 633 LDVW 636
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+
Sbjct: 386 HILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 441
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 274 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 322
Query: 503 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLAT 547
S RT L+ YLDI +QE+L +A+
Sbjct: 323 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMAS 367
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 86/199 (43%), Gaps = 17/199 (8%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 95 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 143
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
S RT L+ YLDI +QE+L +A+ S Y W
Sbjct: 144 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVE 203
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+
Sbjct: 204 ARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKA 263
Query: 299 ASIHSDSAAYEDWRHWRFP 317
I+ A +W + P
Sbjct: 264 GRINKGVAT--NWLRAKEP 280
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 336 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 394
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 395 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 453
Query: 678 EDIF 681
D++
Sbjct: 454 LDVW 457
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 374
H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+
Sbjct: 207 HILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKA 263
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 95 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 143
Query: 503 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLAT 547
S RT L+ YLDI +QE+L +A+
Sbjct: 144 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMAS 188
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 121/297 (40%), Gaps = 20/297 (6%)
Query: 17 DEMCGQEQAFRSWAPEVFNVACETFCLD--DDETLSDATQVISSVTLNASTVRFLPMTTA 74
D+ E+ F +W + + CE F ++ +E+ +++ ++A+ V M
Sbjct: 148 DDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRL 207
Query: 75 DSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMR-KPHDCAYEPGDHVGIFA 133
S ++ + + L +Q R + +++ YE GDHV ++
Sbjct: 208 KSYENQKPPFDAKNPFLAAVTTNRKL--NQGTERHLMHLELDISDSKIRYESGDHVAVYP 265
Query: 134 SNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSR 193
+N LV+ + L G D D M L L E +S K H S RT L+
Sbjct: 266 ANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFPCPTSYRTALTY 314
Query: 194 YLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHWRFPHLLEVLEQ 249
YLDI +QE+L +A+ S Y W H+L +L+
Sbjct: 315 YLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQD 374
Query: 250 FPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSA 306
PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+ I+ A
Sbjct: 375 CPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVA 431
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 496 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 554
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 555 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 613
Query: 678 EDIF 681
D++
Sbjct: 614 LDVW 617
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV Y T+
Sbjct: 367 HILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 422
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 255 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 303
Query: 503 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLAT 547
S RT L+ YLDI +QE+L +A+
Sbjct: 304 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMAS 348
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 120/297 (40%), Gaps = 20/297 (6%)
Query: 17 DEMCGQEQAFRSWAPEVFNVACETFCLD--DDETLSDATQVISSVTLNASTVRFLPMTTA 74
D+ E+ F +W + + CE F ++ +E+ +++ ++A+ V M
Sbjct: 148 DDDGNLEEDFITWREQFWPAVCEHFGVEATGEESSIRQYELVVHTDIDAAKVYMGEMGRL 207
Query: 75 DSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMR-KPHDCAYEPGDHVGIFA 133
S ++ + + L +Q R + +++ YE GDHV ++
Sbjct: 208 KSYENQKPPFDAKNPFLAAVTTNRKL--NQGTERHLMHLELDISDSKIRYESGDHVAVYP 265
Query: 134 SNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSR 193
+N LV+ + L G D D M L L E +S K H S RT L+
Sbjct: 266 ANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFPCPTSYRTALTY 314
Query: 194 YLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHWRFPHLLEVLEQ 249
YLDI +QE+L +A+ S Y W H+L +L+
Sbjct: 315 YLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQD 374
Query: 250 FPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSA 306
PS+ P L L LQ +YSI+SS HPN +H+ VV Y T+ I+ A
Sbjct: 375 CPSLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVA 431
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 496 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 554
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 555 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 613
Query: 678 EDIF 681
D++
Sbjct: 614 LDVW 617
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ PS+ P L L LQ +YSI+SS HPN +H+ VV Y T+
Sbjct: 367 HILAILQDCPSLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETK 422
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 255 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 303
Query: 503 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLAT 547
S RT L+ YLDI +QE+L +A+
Sbjct: 304 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMAS 348
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
+ RT L+ YLDI +QE L +A+ S Y W
Sbjct: 307 TPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 366
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ +PS+ P L+ L LQ R+YSI+SS HPN +H+T V Y +
Sbjct: 367 ARRHILAILQDYPSLRPPIDHLLELLPRLQARYYSIASSSKVHPNSVHITAVAVEYEAKS 426
Query: 299 ASIHSDSA 306
++ A
Sbjct: 427 GRVNKGVA 434
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++G + D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 499 KEVGETLLYYGARRSDEDYLYREELARFHKDGALTQLNVAFSREQA-HKVYVQHLLKRDR 557
Query: 619 SMLYRELIKEGG-HFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
L++ LI EGG H YVCGD MA+ V T + G + A + +L + RY
Sbjct: 558 EHLWK-LIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY 616
Query: 677 HEDIF 681
D++
Sbjct: 617 SLDVW 621
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ +PS+ P L+ L LQ R+YSI+SS HPN +H+T V Y +
Sbjct: 370 HILAILQDYPSLRPPIDHLLELLPRLQARYYSIASSSKVHPNSVHITAVAVEYEAK 425
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 503 PRASLRTLLSRYLDI 517
+ RT L+ YLDI
Sbjct: 307 TPTTYRTALTYYLDI 321
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 85/199 (42%), Gaps = 17/199 (8%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 95 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 143
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
S RT L+ YLDI +QE+L +A+ S Y W
Sbjct: 144 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVE 203
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ PS+ P L L LQ +YSI+SS HPN +H+ VV Y T+
Sbjct: 204 ARRHILAILQDCPSLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETKA 263
Query: 299 ASIHSDSAAYEDWRHWRFP 317
I+ A +W + P
Sbjct: 264 GRINKGVAT--NWLRAKEP 280
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 336 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 394
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 395 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 453
Query: 678 EDIF 681
D++
Sbjct: 454 LDVW 457
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 374
H+L +L+ PS+ P L L LQ +YSI+SS HPN +H+ VV Y T+
Sbjct: 207 HILAILQDCPSLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETKA 263
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L G D D M L L E +S K H
Sbjct: 95 YESGDHVAVYPANDSALVNQLGKIL---GADLDVVMSLNNLDE--------ESNKKHPFP 143
Query: 503 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLAT 547
S RT L+ YLDI +QE+L +A+
Sbjct: 144 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMAS 188
>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60
pdb|1DDG|B Chain B, Crystal Structure Of Sir-Fp60
pdb|1DDI|A Chain A, Crystal Structure Of Sir-Fp60
Length = 374
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASML 621
GK LFFG T D LY E + + + VLT+ LA SR+ K YVQD ++++ + L
Sbjct: 256 GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQK-EKVYVQDKLREQGAEL 314
Query: 622 YRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDI 680
+R I +G H YVCGD MA+ V Q L V G + + A++ L LR E RY D+
Sbjct: 315 WR-WINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDV 373
Query: 681 F 681
+
Sbjct: 374 Y 374
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 325 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSK 377
+F L L+ L PL PR YSI+SS NE+H+TV VV Y +G ++
Sbjct: 140 RFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRAR 192
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 249 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAY 308
+F L L+ L PL PR YSI+SS NE+H+TV VV Y +G + ++++
Sbjct: 140 RFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSF 199
>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of
Human Methionine Synthase Reductase
Length = 539
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI-----PKTYVQDLMK 615
G M LFFGC+ K D L+ E L +LT ++ SR+ + P YVQD ++
Sbjct: 412 FGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQ 471
Query: 616 KEASMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDEN 674
+ R L++E GH YVCGD MA+ V+ L + E + + A K L L++E
Sbjct: 472 LHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEK 531
Query: 675 RYHEDI 680
RY +DI
Sbjct: 532 RYLQDI 537
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 18/268 (6%)
Query: 35 NVACETFCLDDDETLSDATQVISSVTLNASTV--RFLPMTTADSLVTGLSKVH---SRKV 89
NV E F + +L+ + +S +LN + +L + +SL S+V + V
Sbjct: 59 NVVIEDF----ESSLTRSVPPLSQASLNIPGLPPEYLQVHLQESLGQEESQVSVTSADPV 114
Query: 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPH-DCAYEPGDHVGIFASNKWDLVSGILARLN 148
+Q P+ K L + + +TTL +++ + D +Y+PGD + N V +L RL
Sbjct: 115 FQVPISKAVQLTTNDAI-KTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQ 173
Query: 149 LGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDIXXXXXXXXXXX 208
L ++ E VL + T+ + P SL+ + + L+I
Sbjct: 174 L-----EDKREHXVLLKIKADTKKKGATLPQHIPAGXSLQFIFTWCLEIRAIPKKAFLRA 228
Query: 209 XXXXXXXXDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQ--FPSIHLPPALLVAQLTP 266
++ L L + A + R R + FPS P +LL+ L
Sbjct: 229 LVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXACLLDLLLAFPSCQPPLSLLLEHLPK 288
Query: 267 LQPRFYSISSSPLAHPNEIHLTVAVVTY 294
LQPR YS +SS L HP ++H +V +
Sbjct: 289 LQPRPYSCASSSLFHPGKLHFVFNIVEF 316
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 326 FPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKV 383
FPS P +LL+ L LQPR YS +SS L HP ++H +V + + ++V + V
Sbjct: 272 FPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGV 329
>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
Fnr-Like Module Of Human Methionine Synthase Reductase
Length = 539
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI-----PKTYVQDLMK 615
G M LFFGC+ K D L+ E L +LT ++ SR+ + P YVQD ++
Sbjct: 412 FGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQ 471
Query: 616 KEASMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDEN 674
+ R L++E GH YVCGD MA+ V+ L + E + + A K L L++E
Sbjct: 472 LHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEK 531
Query: 675 RYHEDI 680
RY +DI
Sbjct: 532 RYLQDI 537
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 18/268 (6%)
Query: 35 NVACETFCLDDDETLSDATQVISSVTLNASTV--RFLPMTTADSLVTGLSKVH---SRKV 89
NV E F + +L+ + +S +LN + +L + +SL S+V + V
Sbjct: 59 NVVIEDF----ESSLTRSVPPLSQASLNIPGLPPEYLQVHLQESLGQEESQVSVTSADPV 114
Query: 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPH-DCAYEPGDHVGIFASNKWDLVSGILARLN 148
+Q P+ K L + + +TTL +++ + D +Y+PGD + N V +L RL
Sbjct: 115 FQVPISKAVQLTTNDAI-KTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQ 173
Query: 149 LGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDIXXXXXXXXXXX 208
L ++ E VL + T+ + P SL+ + + L+I
Sbjct: 174 L-----EDKREHXVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRA 228
Query: 209 XXXXXXXXDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQ--FPSIHLPPALLVAQLTP 266
++ L L + A + R R + FPS P +LL+ L
Sbjct: 229 LVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXACLLDLLLAFPSCQPPLSLLLEHLPK 288
Query: 267 LQPRFYSISSSPLAHPNEIHLTVAVVTY 294
LQPR YS +SS L HP ++H +V +
Sbjct: 289 LQPRPYSCASSSLFHPGKLHFVFNIVEF 316
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 326 FPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKV 383
FPS P +LL+ L LQPR YS +SS L HP ++H +V + + ++V + V
Sbjct: 272 FPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGV 329
>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
pdb|4DQK|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3
Length = 391
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Query: 549 MQNSRVIKFGLQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPK 607
+Q + +K Q LG+ L+FGC+ D LY +E + ++T A SR P PK
Sbjct: 257 VQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIIT-LHTAFSRMPNQPK 315
Query: 608 TYVQDLMKKEASMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKL 666
TYVQ +M+++ L EL+ +G HFY+CGD + MA V TL + ++E +A
Sbjct: 316 TYVQHVMEQDGKKLI-ELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLW 374
Query: 667 LLRLRDENRYHEDIFG 682
L +L ++ RY +D++
Sbjct: 375 LQQLEEKGRYAKDVWA 390
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)
Query: 107 ARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSET 166
AR+T +++ P + +Y+ GDH+G+ N +V+ + AR G+D + + L+ E
Sbjct: 21 ARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARF---GLDASQQIRLEAEEEK 77
Query: 167 HTSTEVIKSWKPHERLPRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLA 226
+ K+ E L L+ ++R E+ LL
Sbjct: 78 LAHLPLAKTVSVEELLQYVELQDPVTR---------TQLRAMAAKTVAPPHKVELEALL- 127
Query: 227 TDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH 286
+ AY++ + +LE+LE++P+ + + +A L ++PR+YSISSSP +
Sbjct: 128 -EKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQAS 186
Query: 287 LTVAVVT 293
+TV+VV+
Sbjct: 187 ITVSVVS 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 319 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVT 369
+LE+LE++P+ + + +A L ++PR+YSISSSP + +TV+VV+
Sbjct: 143 MLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVS 193
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 427 ARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQV---- 482
AR+T +++ P + +Y+ GDH+G+ N +V+ + AR G+D + + L+
Sbjct: 21 ARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARF---GLDASQQIRLEAEEEK 77
Query: 483 -----LSETHTSTEVIKSWKPHERLPRASLRTLLSR 513
L++T + E+++ + + + R LR + ++
Sbjct: 78 LAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAK 113
>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
pdb|4DQL|B Chain B, Crystal Structure Of The Fad Binding Domain Of Cytochrome
P450 Bm3 In Complex With Nadp+
Length = 393
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Query: 549 MQNSRVIKFGLQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPK 607
+Q + +K Q LG+ L+FGC+ D LY +E + ++T A SR P PK
Sbjct: 259 VQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIIT-LHTAFSRMPNQPK 317
Query: 608 TYVQDLMKKEASMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKL 666
TYVQ +M+++ L EL+ +G HFY+CGD + MA V TL + ++E +A
Sbjct: 318 TYVQHVMEQDGKKLI-ELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLW 376
Query: 667 LLRLRDENRYHEDIFG 682
L +L ++ RY +D++
Sbjct: 377 LQQLEEKGRYAKDVWA 392
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 14/187 (7%)
Query: 107 ARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSET 166
AR+T +++ P + +Y+ GDH+G+ N +V+ + AR G+D + + L+ E
Sbjct: 23 ARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARF---GLDASQQIRLEAEEEK 79
Query: 167 HTSTEVIKSWKPHERLPRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLA 226
+ K+ E L L+ ++R E+ LL
Sbjct: 80 LAHLPLAKTVSVEELLQYVELQDPVTR---------TQLRAMAAKTVCPPHKVELEALL- 129
Query: 227 TDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH 286
+ AY++ + +LE+LE++P+ + + +A L ++PR+YSISSSP +
Sbjct: 130 -EKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQAS 188
Query: 287 LTVAVVT 293
+TV+VV+
Sbjct: 189 ITVSVVS 195
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 319 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVT 369
+LE+LE++P+ + + +A L ++PR+YSISSSP + +TV+VV+
Sbjct: 145 MLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVS 195
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 427 ARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQV---- 482
AR+T +++ P + +Y+ GDH+G+ N +V+ + AR G+D + + L+
Sbjct: 23 ARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARF---GLDASQQIRLEAEEEK 79
Query: 483 -----LSETHTSTEVIKSWKPHERLPRASLRTLLSR 513
L++T + E+++ + + + R LR + ++
Sbjct: 80 LAHLPLAKTVSVEELLQYVELQDPVTRTQLRAMAAK 115
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
+ RT L+ YLDI +QE L +A+ S Y W
Sbjct: 307 CPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 366
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 367 ARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKS 426
Query: 299 ASIHSDSA 306
++ A
Sbjct: 427 GRVNKGVA 434
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 499 KEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQA-HKVYVQHLLKRDR 557
Query: 619 SMLYRELIKEGG-HFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
L++ LI EGG H YVCGD MA+ V T + G + A + +L + RY
Sbjct: 558 EHLWK-LIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY 616
Query: 677 HEDI 680
D+
Sbjct: 617 SLDV 620
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 370 HILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 425
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 503 PRASLRTLLSRYLDI 517
+ RT L+ YLDI
Sbjct: 307 CPTTYRTALTYYLDI 321
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 251 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 299
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
+ RT L+ YLDI +QE L +A+ S Y W
Sbjct: 300 CPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 359
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 360 ARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKS 419
Query: 299 ASIHSDSA 306
++ A
Sbjct: 420 GRVNKGVA 427
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 492 KEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQA-HKVYVQHLLKRDR 550
Query: 619 SMLYRELIKEGG-HFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
L++ LI EGG H YVCGD MA+ V T + G + A + +L + RY
Sbjct: 551 EHLWK-LIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY 609
Query: 677 HEDIF 681
D++
Sbjct: 610 SLDVW 614
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 363 HILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 418
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 251 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 299
Query: 503 PRASLRTLLSRYLDI 517
+ RT L+ YLDI
Sbjct: 300 CPTTYRTALTYYLDI 314
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
+ RT L+ YLDI +QE L +A+ S Y W
Sbjct: 307 CPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 366
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 367 ARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKS 426
Query: 299 ASIHSDSA 306
++ A
Sbjct: 427 GRVNKGVA 434
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 499 KEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQA-HKVYVQHLLKRDR 557
Query: 619 SMLYRELIKEGG-HFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
L++ LI EGG H YVCGD MA+ V T + G + A + +L + RY
Sbjct: 558 EHLWK-LIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY 616
Query: 677 HEDI 680
D+
Sbjct: 617 SLDV 620
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 370 HILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 425
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 503 PRASLRTLLSRYLDI 517
+ RT L+ YLDI
Sbjct: 307 CPTTYRTALTYYLDI 321
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 254 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 302
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
+ RT L+ YLDI +QE L +A+ S Y W
Sbjct: 303 CPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 362
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 363 ARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKS 422
Query: 299 ASIHSDSA 306
++ A
Sbjct: 423 GRVNKGVA 430
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 495 KEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQA-HKVYVQHLLKRDR 553
Query: 619 SMLYRELIKEGG-HFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
L++ LI EGG H YVCGD MA+ V T + G + A + +L + RY
Sbjct: 554 EHLWK-LIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY 612
Query: 677 HEDIF 681
D++
Sbjct: 613 SLDVW 617
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ +PS+ P L L LQ R+YSI+SS HPN +H+ V Y +
Sbjct: 366 HILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 421
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 254 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 302
Query: 503 PRASLRTLLSRYLDI 517
+ RT L+ YLDI
Sbjct: 303 CPTTYRTALTYYLDI 317
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 183 PRASLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAA----YEDWRHW 238
+ RT L+ YLDI +QE L +A+ S Y W
Sbjct: 307 CPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE 366
Query: 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
H+L +L+ +PS+ P L L LQ R+Y+I+SS HPN +H+ V Y +
Sbjct: 367 ARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKS 426
Query: 299 ASIHSDSA 306
++ A
Sbjct: 427 GRVNKGVA 434
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 499 KEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQA-HKVYVQHLLKRDR 557
Query: 619 SMLYRELIKEGG-HFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
L++ LI EGG H YV GD MA+ V T + G + A + +L + RY
Sbjct: 558 EHLWK-LIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY 616
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 318 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 373
H+L +L+ +PS+ P L L LQ R+Y+I+SS HPN +H+ V Y +
Sbjct: 370 HILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAK 425
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 258 YESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKHPFP 306
Query: 503 PRASLRTLLSRYLDI 517
+ RT L+ YLDI
Sbjct: 307 CPTTYRTALTYYLDI 321
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 562 LGKMTLFFGCQLKTMDLYSDE---KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
LGK LF+G + LY DE +K LD + +A SR P K YVQD +K
Sbjct: 562 LGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSF--EMVVAHSRLPNTKKVYVQDKLKDYE 619
Query: 619 SMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
++ E+I G YVCGD MA+ V L + ++T A +L+ L+ RY
Sbjct: 620 DQVF-EMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQ 678
Query: 678 EDI 680
ED+
Sbjct: 679 EDV 681
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 116/293 (39%), Gaps = 30/293 (10%)
Query: 17 DEMCGQ-EQAFRSWAPEVFNVACETFCLDDDET-------LSDATQVISSVTLNASTVRF 68
D+ G ++ + +W + V + LD+ E + ++ S++L + +
Sbjct: 177 DDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKFTSQFQYTVLNEITDSMSLGEPSAHY 236
Query: 69 LPMTTADSLVTG--LSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMR-KPHDCAYEP 125
LP + G L + + P++K L+ S R + + + Y
Sbjct: 237 LPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELFSSND--RNCIHSEFDLSGSNIKYST 294
Query: 126 GDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRA 185
GDH+ ++ SN + V L+ NL DP+ +L+ L T +K P A
Sbjct: 295 GDHLAVWPSNPLEKVEQFLSIFNL---DPETIFDLKPLDPT------VKVPFPTPTTIGA 345
Query: 186 SLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAAYEDWRHWRFPHLLE 245
+++ YL+I D +E LTLL+ D + ++ ++ +
Sbjct: 346 AIK----HYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIAD 401
Query: 246 VLEQFPSIH----LPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTY 294
L+ +P LV + + PR+YSISSS L+ +H+T V +
Sbjct: 402 ALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENF 454
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 562 LGKMTLFFGCQLKTMDLYSDE---KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
LGK LF+G + LY DE +K LD + +A SR P K YVQD +K
Sbjct: 562 LGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSF--EMVVAHSRLPNTKKVYVQDKLKDYE 619
Query: 619 SMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
++ E+I G YVCGD MA+ V L + ++T A +L+ L+ RY
Sbjct: 620 DQVF-EMINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQ 678
Query: 678 EDI 680
ED+
Sbjct: 679 EDV 681
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 116/293 (39%), Gaps = 30/293 (10%)
Query: 17 DEMCGQ-EQAFRSWAPEVFNVACETFCLDDDET-------LSDATQVISSVTLNASTVRF 68
D+ G ++ + +W + V + LD+ E + ++ S++L + +
Sbjct: 177 DDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKFTSQFQYTVLNEITDSMSLGEPSAHY 236
Query: 69 LPMTTADSLVTG--LSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMR-KPHDCAYEP 125
LP + G L + + P++K L+ S R + + + Y
Sbjct: 237 LPSHQLNRNADGIQLGPFDLSQPYIAPIVKSRELFSSND--RNCIHSEFDLSGSNIKYST 294
Query: 126 GDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRA 185
GDH+ ++ SN + V L+ NL DP+ +L+ L T +K P A
Sbjct: 295 GDHLAVWPSNPLEKVEQFLSIFNL---DPETIFDLKPLDPT------VKVPFPTPTTIGA 345
Query: 186 SLRTLLSRYLDIXXXXXXXXXXXXXXXXXXXDDQEILTLLATDSAAYEDWRHWRFPHLLE 245
+++ YL+I D +E LTLL+ D + ++ ++ +
Sbjct: 346 AIK----HYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIAD 401
Query: 246 VLEQFPSIH----LPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTY 294
L+ +P LV + + PR+YSISSS L+ +H+T V +
Sbjct: 402 ALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENF 454
>pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|C Chain C, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|E Chain E, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|G Chain G, Human Inos Reductase And Calmodulin Complex
Length = 219
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 17 DEMCGQEQAFRSWAPEVFNVACETF 41
DE+ GQE AFRSWA + F ACETF
Sbjct: 164 DELSGQEDAFRSWAVQTFKAACETF 188
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 549 MQNSRVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSF-LALSREP---T 604
M++ +FG G LF G LY +E + L Q + ALSRE +
Sbjct: 189 MEDVPNYRFG----GLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRS 244
Query: 605 IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAE 664
K YVQD +++ + +++ L+ G H Y CG M + TLK V + G +Q
Sbjct: 245 GGKMYVQDKIEEYSDEIFK-LLDGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQK-- 301
Query: 665 KLLLRLRDENRYHEDIF 681
L +L+ ++H +++
Sbjct: 302 --LAQLKKNKQWHVEVY 316
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 549 MQNSRVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSF-LALSREP---T 604
M++ +FG G LF G LY +E + L Q + ALSRE +
Sbjct: 184 MEDVPNYRFG----GLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRS 239
Query: 605 IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAE 664
K YVQD +++ + +++ L+ G H Y CG M + TLK V + G +Q
Sbjct: 240 GGKMYVQDKIEEYSDEIFK-LLDGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQK-- 296
Query: 665 KLLLRLRDENRYHEDIF 681
L +L+ ++H +++
Sbjct: 297 --LAQLKKNKQWHVEVY 311
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 563 GKMTLFFGCQLKTMDLYSDEKSKML----DQKVLTKSFLALSREPTIP---KTYVQDLMK 615
GK L FG LY D+ KM D LT A+SRE K YVQ +
Sbjct: 284 GKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLT---YAISREQKTADGGKVYVQSRVS 340
Query: 616 KEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENR 675
+ A L+ + K H Y+CG M + +T F E N E++ ++ E+R
Sbjct: 341 EYADELFEMIQKPNTHVYMCGLKGMQPPIDET----FTAEAEKRGLNWEEMRRSMKKEHR 396
Query: 676 YHEDIF 681
+H +++
Sbjct: 397 WHVEVY 402
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 549 MQNSRVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSF-LALSREP---T 604
M++ +FG G LF G LY +E + L Q + ALSRE +
Sbjct: 184 MEDVPNYRFG----GLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRS 239
Query: 605 IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAE 664
K YVQD +++ + +++ L+ G H Y CG M + TLK V + G +Q
Sbjct: 240 GGKMYVQDKIEEYSDEIFK-LLDGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQK-- 296
Query: 665 KLLLRLRDENRYHEDI 680
L +L+ ++H ++
Sbjct: 297 --LAQLKKNKQWHVEV 310
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 250 QLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 304
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + E H Y+CG M E +
Sbjct: 250 QLIKNEKTHTYICGLRGMEEGI 271
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 249 QLIKNQKTHTYICGPRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 303
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 250 QLIKNQKTHTYICGPRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 304
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + F
Sbjct: 249 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETF 303
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGPRGMEEGI 271
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 249 QLIKNQKTHTYICGLRGMEEGI 270
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 181 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 240
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 241 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 295
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 181 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 240
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 241 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 295
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 249 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 303
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 181 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 240
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 241 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 295
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 249 QLIKNQKTHTYICGLRGMEEGI 270
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 249 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 303
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 181 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 240
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 241 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 295
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 304
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 181 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 240
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 241 QLIKNQKTHTYICGLRGMEEGI 262
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 181 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 240
Query: 623 RELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ + + H Y+CG M E + L EG +T + +K L+ R+H + +
Sbjct: 241 QLIKNQKTHTYICGLEGMEEGIDAALSAAAAKEG-VTWSDYQK---DLKKAGRWHVETY 295
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 553 RVIKFGLQELGKMTLFFGC----QLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTIP-- 606
++IKF G +TL +G +L MD +SK + K++T A+SRE
Sbjct: 191 KLIKF----TGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLIT----AISREEKNSFD 242
Query: 607 --KTYVQDLMKKEASMLYRELIKEGGHFYVCGD-CTMAEHVYQTLKYVFQHEGNLTE 660
+ Y+ ++++A + ++++ GG FY+CG M + V + ++ + + G E
Sbjct: 243 GGRMYISHRVREQAEAV-KKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGTYEE 298
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 190 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLW 249
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 250 QLIKNQKTHTYICGLRGMEEGI 271
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 567 LFFGCQLKTMDLYSDE----KSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLY 622
L FG LY +E + K D LT + + P + Y+QD + + A L+
Sbjct: 189 LVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELW 248
Query: 623 RELIKEGGHFYVCGDCTMAEHV 644
+ + + H Y+CG M E +
Sbjct: 249 QLIKNQKTHTYICGLRGMEEGI 270
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 125 PGDHVGIFASNKWDLVSGILARLNLGG----IDPDEPMELQVLSETHTSTEVIKSWKP 178
PG VG+ +D+V +LA L GG +DP P+E LS T ++ + +P
Sbjct: 124 PGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP 181
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 445 PGDHVGIFASNKWDLVSGILARLNLGG----IDPDEPMELQVLSETHTSTEVIKSWKP 498
PG VG+ +D+V +LA L GG +DP P+E LS T ++ + +P
Sbjct: 124 PGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP 181
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 142 GILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL----PRASLRTLLSRY 194
I + G PD P +L ETH E+I SW P PRA+ TL+ +
Sbjct: 270 NIFGTVIFAGYPPDTPQQLNC--ETHDLKEIICSWNPGRVTALVGPRATSYTLVESF 324
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 462 GILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL----PRASLRTLLSRY 514
I + G PD P +L ETH E+I SW P PRA+ TL+ +
Sbjct: 270 NIFGTVIFAGYPPDTPQQLNC--ETHDLKEIICSWNPGRVTALVGPRATSYTLVESF 324
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 125 PGDHVGIFASNKWDLVSGILARLNLGG----IDPDEPMELQVLSETHTSTEVIKSWKP 178
PG VG+ +D+V +LA L GG +DP P+E LS T ++ + +P
Sbjct: 124 PGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP 181
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 445 PGDHVGIFASNKWDLVSGILARLNLGG----IDPDEPMELQVLSETHTSTEVIKSWKP 498
PG VG+ +D+V +LA L GG +DP P+E LS T ++ + +P
Sbjct: 124 PGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRP 181
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 597 LALSREPTIPKT---YVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQ 653
A+SRE T K Y+Q M + A L+ L K+ +FY+CG M + + + +
Sbjct: 231 FAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAA 290
Query: 654 HEG 656
EG
Sbjct: 291 AEG 293
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 597 LALSREPTIPKT---YVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQ 653
A+SRE T K Y+Q M + A L+ L K+ +FY+CG M + + + +
Sbjct: 231 FAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAA 290
Query: 654 HEG 656
EG
Sbjct: 291 AEG 293
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 597 LALSREPTIPKT---YVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQ 653
A+SRE T K Y+Q M + A L+ L K+ +FY+CG M + + + +
Sbjct: 231 FAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAA 290
Query: 654 HEG 656
EG
Sbjct: 291 AEG 293
>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of
Ferredoxin-Nadp+ Reductase: Structure-Function
Relationship As Studied By Site-Directed Mutagenesis And
X- Ray Crystallography
Length = 314
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 597 LALSREPTIPKT---YVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQ 653
A+SRE T K Y+Q M + A L+ L K+ +FY+CG M + + + +
Sbjct: 231 FAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAA 290
Query: 654 HEG 656
EG
Sbjct: 291 AEG 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,992,138
Number of Sequences: 62578
Number of extensions: 741711
Number of successful extensions: 1665
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 137
length of query: 707
length of database: 14,973,337
effective HSP length: 106
effective length of query: 601
effective length of database: 8,340,069
effective search space: 5012381469
effective search space used: 5012381469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)