Query psy15286
Match_columns 707
No_of_seqs 294 out of 2237
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:11:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1158|consensus 100.0 1.1E-83 2.5E-88 728.7 37.3 482 1-681 155-645 (645)
2 KOG1159|consensus 100.0 4.9E-81 1.1E-85 668.8 33.2 454 1-681 112-574 (574)
3 cd06202 Nitric_oxide_synthase 100.0 1.8E-74 3.9E-79 639.0 41.6 403 93-685 1-406 (406)
4 COG0369 CysJ Sulfite reductase 100.0 1.3E-74 2.8E-79 656.2 39.6 427 1-681 157-587 (587)
5 PRK10953 cysJ sulfite reductas 100.0 3.1E-72 6.7E-77 644.7 44.5 426 1-681 171-600 (600)
6 cd06204 CYPOR NADPH cytochrome 100.0 1.5E-70 3.3E-75 609.4 41.4 403 86-681 2-416 (416)
7 TIGR01931 cysJ sulfite reducta 100.0 5.2E-70 1.1E-74 628.5 44.8 426 1-681 168-597 (597)
8 cd06203 methionine_synthase_re 100.0 1.1E-69 2.5E-74 599.4 38.2 384 93-681 1-398 (398)
9 cd06207 CyPoR_like NADPH cytoc 100.0 8.2E-69 1.8E-73 590.0 38.1 375 94-681 2-382 (382)
10 cd06206 bifunctional_CYPOR The 100.0 1.1E-67 2.3E-72 581.6 39.9 378 93-681 1-384 (384)
11 PRK06214 sulfite reductase; Pr 100.0 4.3E-64 9.4E-69 567.2 36.7 366 82-681 161-530 (530)
12 cd06199 SiR Cytochrome p450- l 100.0 9.2E-64 2E-68 545.8 35.5 353 93-681 1-360 (360)
13 PF00667 FAD_binding_1: FAD bi 100.0 9.5E-45 2.1E-49 370.4 20.5 214 83-311 2-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 1.1E-34 2.3E-39 316.0 23.5 276 83-681 84-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 3.7E-30 8E-35 270.5 24.9 218 269-681 48-267 (267)
16 cd06208 CYPOR_like_FNR These f 100.0 2.6E-28 5.5E-33 259.0 26.3 216 268-681 63-286 (286)
17 TIGR03224 benzo_boxA benzoyl-C 100.0 3.9E-28 8.4E-33 269.5 27.0 270 84-681 137-411 (411)
18 cd06201 SiR_like2 Cytochrome p 100.0 1.3E-27 2.8E-32 254.0 26.6 108 563-681 181-289 (289)
19 cd06200 SiR_like1 Cytochrome p 99.9 5E-27 1.1E-31 243.8 18.7 107 563-681 137-245 (245)
20 PLN03116 ferredoxin--NADP+ red 99.9 1.9E-26 4.2E-31 247.1 18.9 114 562-681 189-307 (307)
21 PRK10926 ferredoxin-NADP reduc 99.7 2.1E-17 4.7E-22 172.0 9.8 88 562-651 134-228 (248)
22 PRK08051 fre FMN reductase; Va 99.7 6.6E-17 1.4E-21 166.4 10.9 83 562-651 130-217 (232)
23 PRK13289 bifunctional nitric o 99.7 5.2E-17 1.1E-21 180.0 10.6 101 562-684 289-395 (399)
24 cd06188 NADH_quinone_reductase 99.7 1.3E-16 2.8E-21 169.1 12.6 87 562-651 179-271 (283)
25 PRK05464 Na(+)-translocating N 99.7 1.4E-16 3.1E-21 177.4 12.8 100 562-682 303-408 (409)
26 TIGR01941 nqrF NADH:ubiquinone 99.7 1.5E-16 3.3E-21 177.0 12.6 100 562-682 299-404 (405)
27 cd00322 FNR_like Ferredoxin re 99.7 2.9E-16 6.3E-21 159.0 12.5 89 561-651 124-213 (223)
28 PRK07609 CDP-6-deoxy-delta-3,4 99.7 2.2E-16 4.8E-21 171.5 12.2 98 562-684 232-335 (339)
29 cd06209 BenDO_FAD_NAD Benzoate 99.7 3.1E-16 6.8E-21 160.5 11.1 84 561-651 129-215 (228)
30 PRK11872 antC anthranilate dio 99.7 4.5E-16 9.7E-21 169.4 12.5 97 562-683 237-337 (340)
31 cd06190 T4MO_e_transfer_like T 99.7 4.1E-16 8.9E-21 159.9 10.9 85 561-651 126-218 (232)
32 cd06189 flavin_oxioreductase N 99.7 4.4E-16 9.5E-21 159.1 10.9 83 562-651 126-212 (224)
33 PRK10684 HCP oxidoreductase, N 99.6 5.5E-16 1.2E-20 168.1 11.9 98 562-683 139-239 (332)
34 cd06211 phenol_2-monooxygenase 99.6 4.6E-16 1E-20 160.5 10.1 83 563-651 138-226 (238)
35 cd06195 FNR1 Ferredoxin-NADP+ 99.6 4.5E-16 9.8E-21 160.7 9.9 105 562-681 129-241 (241)
36 cd06212 monooxygenase_like The 99.6 9.8E-16 2.1E-20 157.2 11.0 95 562-682 131-232 (232)
37 cd06210 MMO_FAD_NAD_binding Me 99.6 1.1E-15 2.5E-20 157.0 11.2 84 562-651 136-223 (236)
38 cd06184 flavohem_like_fad_nad_ 99.6 1.1E-15 2.5E-20 158.2 11.1 97 562-682 141-244 (247)
39 cd06187 O2ase_reductase_like T 99.6 1.4E-15 2.9E-20 155.0 11.0 84 561-651 125-212 (224)
40 cd06191 FNR_iron_sulfur_bindin 99.6 1.2E-15 2.5E-20 156.6 9.9 83 562-651 130-219 (231)
41 cd06194 FNR_N-term_Iron_sulfur 99.6 2.8E-15 6.1E-20 152.7 12.3 95 562-682 125-222 (222)
42 cd06213 oxygenase_e_transfer_s 99.6 2.7E-15 6E-20 153.5 10.8 81 562-651 128-215 (227)
43 PRK05713 hypothetical protein; 99.6 3.2E-15 6.9E-20 160.8 10.0 89 562-683 220-310 (312)
44 PRK08345 cytochrome-c3 hydroge 99.6 6.1E-15 1.3E-19 157.0 11.9 83 562-651 137-234 (289)
45 TIGR02160 PA_CoA_Oxy5 phenylac 99.6 7.5E-15 1.6E-19 160.3 10.5 102 562-683 137-243 (352)
46 cd06196 FNR_like_1 Ferredoxin 99.5 2E-14 4.3E-19 146.1 11.0 81 562-651 127-208 (218)
47 cd06214 PA_degradation_oxidore 99.5 2.3E-14 5.1E-19 147.6 10.9 86 562-651 136-228 (241)
48 cd06215 FNR_iron_sulfur_bindin 99.5 3.5E-14 7.6E-19 145.3 11.9 82 562-651 131-219 (231)
49 cd06221 sulfite_reductase_like 99.5 5.6E-14 1.2E-18 146.7 13.6 82 562-651 127-212 (253)
50 cd06216 FNR_iron_sulfur_bindin 99.5 4.2E-14 9.1E-19 146.3 11.5 82 561-651 149-232 (243)
51 cd06217 FNR_iron_sulfur_bindin 99.5 4E-14 8.7E-19 145.2 10.1 82 562-651 135-223 (235)
52 cd06218 DHOD_e_trans FAD/NAD b 99.5 1.2E-13 2.5E-18 143.8 12.0 76 563-651 125-202 (246)
53 PRK08221 anaerobic sulfite red 99.5 2.2E-13 4.8E-18 143.2 12.4 80 562-651 130-214 (263)
54 COG1018 Hmp Flavodoxin reducta 99.5 4.1E-13 9E-18 141.2 13.6 95 563-685 138-234 (266)
55 cd06198 FNR_like_3 NAD(P) bind 99.5 1.7E-13 3.8E-18 139.1 10.0 79 562-651 123-203 (216)
56 COG2871 NqrF Na+-transporting 99.5 2.1E-13 4.6E-18 139.8 10.4 90 561-652 303-397 (410)
57 PTZ00319 NADH-cytochrome B5 re 99.5 6.3E-13 1.4E-17 142.4 14.4 85 562-651 195-290 (300)
58 cd06183 cyt_b5_reduct_like Cyt 99.4 5.6E-13 1.2E-17 136.4 12.8 82 562-651 133-224 (234)
59 PTZ00274 cytochrome b5 reducta 99.4 2.6E-13 5.7E-18 146.7 9.7 80 562-649 193-283 (325)
60 cd06185 PDR_like Phthalate dio 99.4 1.2E-12 2.7E-17 132.1 12.2 87 563-682 125-211 (211)
61 TIGR02911 sulfite_red_B sulfit 99.4 1.1E-12 2.4E-17 137.7 12.2 80 562-651 128-212 (261)
62 PF00175 NAD_binding_1: Oxidor 99.3 4.9E-13 1.1E-17 120.6 3.7 83 560-646 22-109 (109)
63 PRK00054 dihydroorotate dehydr 99.3 4.1E-12 8.9E-17 132.4 9.9 73 563-651 129-203 (250)
64 cd06220 DHOD_e_trans_like2 FAD 99.3 6.8E-12 1.5E-16 129.3 10.2 75 563-651 114-189 (233)
65 PLN02252 nitrate reductase [NA 99.3 1.5E-11 3.2E-16 148.1 13.5 83 561-651 786-878 (888)
66 cd06197 FNR_like_2 FAD/NAD(P) 99.3 1.4E-11 3.1E-16 126.1 10.4 57 562-650 154-211 (220)
67 PTZ00306 NADH-dependent fumara 99.3 8.1E-12 1.8E-16 155.4 10.0 82 562-651 1062-1151(1167)
68 PRK06222 ferredoxin-NADP(+) re 99.2 2.6E-11 5.7E-16 128.7 9.3 77 563-651 125-203 (281)
69 cd06219 DHOD_e_trans_like1 FAD 99.2 4.4E-11 9.5E-16 124.6 9.4 76 563-650 124-201 (248)
70 COG0543 UbiB 2-polyprenylpheno 99.2 1.6E-10 3.4E-15 121.0 12.3 79 561-651 134-214 (252)
71 cd06192 DHOD_e_trans_like FAD/ 99.2 1E-10 2.3E-15 121.2 10.5 75 563-651 124-200 (243)
72 KOG0534|consensus 99.1 9.5E-10 2.1E-14 116.0 12.0 85 560-651 183-276 (286)
73 COG4097 Predicted ferric reduc 99.0 1.1E-09 2.3E-14 116.9 10.4 80 562-651 343-423 (438)
74 PF00667 FAD_binding_1: FAD bi 99.0 1.9E-10 4.1E-15 117.9 4.1 78 307-384 141-219 (219)
75 PRK05802 hypothetical protein; 99.0 7.4E-10 1.6E-14 119.8 7.3 75 563-651 199-276 (320)
76 KOG1158|consensus 99.0 8.4E-10 1.8E-14 127.3 7.0 85 304-388 381-467 (645)
77 PRK12778 putative bifunctional 98.9 2.8E-09 6E-14 127.8 9.5 77 563-651 125-203 (752)
78 KOG1159|consensus 98.9 1.6E-09 3.5E-14 118.7 6.5 73 315-389 338-411 (574)
79 COG0369 CysJ Sulfite reductase 98.9 2.4E-09 5.2E-14 123.4 7.8 73 316-388 344-416 (587)
80 PRK12779 putative bifunctional 98.9 4.8E-09 1E-13 127.9 9.9 84 563-651 777-869 (944)
81 cd06186 NOX_Duox_like_FAD_NADP 98.8 1.3E-08 2.8E-13 102.7 7.9 60 561-650 137-197 (210)
82 cd06193 siderophore_interactin 98.8 1.9E-08 4.1E-13 103.9 9.0 72 563-651 146-220 (235)
83 cd06204 CYPOR NADPH cytochrome 98.6 6E-08 1.3E-12 108.7 7.4 82 308-389 138-223 (416)
84 PRK12775 putative trifunctiona 98.6 1E-07 2.2E-12 117.4 9.0 75 563-651 126-203 (1006)
85 cd06202 Nitric_oxide_synthase 98.6 7.8E-08 1.7E-12 107.5 6.7 80 309-388 141-223 (406)
86 cd06203 methionine_synthase_re 98.4 3.5E-07 7.6E-12 102.0 6.7 76 308-388 137-212 (398)
87 cd06199 SiR Cytochrome p450- l 98.3 1.1E-06 2.3E-11 96.9 7.9 73 316-388 115-189 (360)
88 cd06207 CyPoR_like NADPH cytoc 98.3 1.2E-06 2.6E-11 97.2 7.9 74 315-388 134-208 (382)
89 PRK06214 sulfite reductase; Pr 98.3 1.6E-06 3.4E-11 99.7 8.2 71 316-386 287-357 (530)
90 cd06206 bifunctional_CYPOR The 98.2 1.7E-06 3.7E-11 96.1 7.2 79 310-388 126-206 (384)
91 TIGR01931 cysJ sulfite reducta 98.2 2.6E-06 5.6E-11 99.8 8.0 71 316-387 355-425 (597)
92 PRK10953 cysJ sulfite reductas 98.2 3E-06 6.6E-11 99.0 8.5 71 316-387 358-428 (600)
93 PLN02292 ferric-chelate reduct 97.8 7E-05 1.5E-09 88.6 9.7 72 562-639 464-547 (702)
94 PLN02844 oxidoreductase/ferric 97.8 5.4E-05 1.2E-09 89.9 8.3 72 562-638 456-535 (722)
95 PLN02631 ferric-chelate reduct 97.5 0.00016 3.5E-09 85.5 7.0 41 562-604 445-492 (699)
96 PF08030 NAD_binding_6: Ferric 96.2 0.0024 5.2E-08 61.3 2.2 43 560-603 32-78 (156)
97 KOG3378|consensus 96.1 0.0019 4.1E-08 67.2 1.0 27 625-651 342-368 (385)
98 PF00970 FAD_binding_6: Oxidor 85.8 0.6 1.3E-05 41.2 2.6 44 269-349 48-91 (99)
99 PLN03116 ferredoxin--NADP+ red 72.2 7.8 0.00017 41.9 6.2 48 86-134 21-68 (307)
100 PF00970 FAD_binding_6: Oxidor 54.7 28 0.0006 30.4 5.4 38 91-134 1-41 (99)
101 PLN03115 ferredoxin--NADP(+) r 48.9 24 0.00051 39.4 4.8 44 345-388 145-192 (367)
102 KOG0560|consensus 48.3 6.5 0.00014 44.6 0.3 38 1-38 28-67 (638)
103 KOG1160|consensus 48.3 12 0.00026 42.2 2.3 35 2-39 160-194 (601)
104 cd06196 FNR_like_1 Ferredoxin 42.6 41 0.00089 33.8 5.1 37 91-133 2-38 (218)
105 cd06217 FNR_iron_sulfur_bindin 40.5 56 0.0012 33.2 5.8 38 91-134 3-42 (235)
106 PRK00054 dihydroorotate dehydr 38.2 68 0.0015 33.3 6.0 40 89-134 4-43 (250)
107 cd06213 oxygenase_e_transfer_s 38.0 64 0.0014 32.7 5.7 38 91-134 2-39 (227)
108 cd06212 monooxygenase_like The 35.1 68 0.0015 32.6 5.4 37 91-133 2-40 (232)
109 PRK08051 fre FMN reductase; Va 33.9 79 0.0017 32.4 5.7 37 90-132 3-39 (232)
110 cd06211 phenol_2-monooxygenase 31.8 1E+02 0.0022 31.5 6.1 40 88-133 5-46 (238)
111 cd06209 BenDO_FAD_NAD Benzoate 31.1 1E+02 0.0022 31.2 5.9 38 90-133 2-41 (228)
112 cd06200 SiR_like1 Cytochrome p 30.1 98 0.0021 32.1 5.6 40 94-134 3-43 (245)
113 cd06184 flavohem_like_fad_nad_ 29.0 1.3E+02 0.0027 30.9 6.2 41 89-135 6-49 (247)
114 PRK10684 HCP oxidoreductase, N 28.1 1.3E+02 0.0028 32.7 6.4 42 86-133 6-47 (332)
115 cd06210 MMO_FAD_NAD_binding Me 27.8 1.1E+02 0.0025 31.0 5.6 38 90-133 2-45 (236)
116 PF04703 FaeA: FaeA-like prote 27.8 1.3E+02 0.0027 25.0 4.7 26 653-678 22-47 (62)
117 cd06189 flavin_oxioreductase N 27.2 1E+02 0.0022 31.2 5.0 36 92-133 1-36 (224)
118 cd06214 PA_degradation_oxidore 26.4 1.2E+02 0.0026 30.9 5.5 39 90-134 2-44 (241)
119 PRK05713 hypothetical protein; 24.6 1.1E+02 0.0024 33.0 5.0 38 90-133 92-129 (312)
120 PRK14841 undecaprenyl pyrophos 23.8 3E+02 0.0065 28.8 7.8 67 589-655 46-117 (233)
121 PRK07609 CDP-6-deoxy-delta-3,4 22.6 1.6E+02 0.0035 31.9 5.9 41 88-134 101-143 (339)
122 cd06190 T4MO_e_transfer_like T 22.2 1.1E+02 0.0023 31.1 4.2 26 109-134 10-35 (232)
123 PF11181 YflT: Heat induced st 21.0 3.3E+02 0.0071 24.4 6.6 30 643-678 72-101 (103)
124 cd06215 FNR_iron_sulfur_bindin 20.7 1.6E+02 0.0035 29.7 5.1 34 93-132 2-37 (231)
125 PF11132 SplA: Transcriptional 20.1 69 0.0015 27.4 1.8 16 122-137 5-20 (75)
No 1
>KOG1158|consensus
Probab=100.00 E-value=1.1e-83 Score=728.66 Aligned_cols=482 Identities=36% Similarity=0.577 Sum_probs=399.6
Q ss_pred ChhccCceecccceeccCCCCcHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccCceeeeccCCCccccccc
Q psy15286 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISSVTLNASTVRFLPMTTADSLVTG 80 (707)
Q Consensus 1 ~l~~lGa~r~~~~g~gD~~~g~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (707)
+|++|||+|++..|+|||+.++|++|..|++.+|+++++.|++++.....+.........+....+++............
T Consensus 155 ~l~~lg~~rl~~~glgdd~~~~e~~f~~w~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (645)
T KOG1158|consen 155 LLEELGANRLFQLGLGDDDAGLEEDFRTWKKPLLPELCETFSLEEDEATKEDETIRQYRTWTPNDPPFVPQAFPPELLNL 234 (645)
T ss_pred HHHHhhhhhhhccccccccccchhHHHHHHHHHhHhhhheeeeccccccCCcccccccccCcCccccccccccCcccccc
Confidence 47899999999999999999999999999999999999999987543211111111111222222222222111111111
Q ss_pred --ccccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCc
Q psy15286 81 --LSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEP 157 (707)
Q Consensus 81 --~~~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~ 157 (707)
..+.....++.+.++.+..|.. +.+.+.++|++++. ++++.|+||||++|+|.|+.+.|++++++|++. .+.+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~-~~~~~~ 312 (645)
T KOG1158|consen 235 LSSTPFDKVFPFPALVVVNLALST-PSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLN-PDTDFS 312 (645)
T ss_pred ccCCcchhcccchhhhhHHhhccC-CCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCC-CccceE
Confidence 1233456677788888888887 78899999999997 669999999999999999999999999999952 234444
Q ss_pred eEecccccccccccccccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhc--hHHHHH
Q psy15286 158 MELQVLSETHTSTEVIKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATD--SAAYED 234 (707)
Q Consensus 158 i~l~~~~~~~~~~~~~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~--~~~y~~ 234 (707)
+.+....++ + ...|..+.++| ++|++++|++|+||+++|++++++.||+||+|+.||++|+.|++. ...|.+
T Consensus 313 ~~~~~~~~~---~--~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~ 387 (645)
T KOG1158|consen 313 LQLELETDT---N--PTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPR 387 (645)
T ss_pred EEEeecCCC---C--CCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhH
Confidence 444432221 1 12344455666 999999999999999999999999999999999999999999985 789999
Q ss_pred HhhcCCCCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCcccccccccccc
Q psy15286 235 WRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHW 314 (707)
Q Consensus 235 ~~~~~~~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~ 314 (707)
|....+++++|||++||+|++|++.|++++|+++||+|||||||+.+|+++|+++++|+|.++.| +..|+|+||+|
T Consensus 388 ~~~~~~~tl~dVl~~fps~kpP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg-~~~r~GVcS~~--- 463 (645)
T KOG1158|consen 388 WVRQSCLTLLDVLEAFPSCKPPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDG-GPKRYGVCSNW--- 463 (645)
T ss_pred HHhcccccHHHHHhhCCCCCCCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCC-CCccceehhhh---
Confidence 99999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccc
Q psy15286 315 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNL 394 (707)
Q Consensus 315 ~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (707)
|..+.+++.+..
T Consensus 464 ----------------------L~~l~~~~~~~~---------------------------------------------- 475 (645)
T KOG1158|consen 464 ----------------------LSNLKPGEKVPN---------------------------------------------- 475 (645)
T ss_pred ----------------------HHhcCCccccCc----------------------------------------------
Confidence 888887765431
Q ss_pred cCCCCCCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCC
Q psy15286 395 YGSQPVAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDP 474 (707)
Q Consensus 395 ~~~~~~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAP 474 (707)
.++++++ .|+||.|+++|||| ||||| ||||
T Consensus 476 -----------~~~~~~s--~frlp~dp~~PiIM--------------IGpGT-----------------------GiAP 505 (645)
T KOG1158|consen 476 -----------PVPVGKS--MFRLPSDPSTPIIM--------------IGPGT-----------------------GIAP 505 (645)
T ss_pred -----------ceeeccc--ceecCCCCCCcEEE--------------EcCCC-----------------------cchh
Confidence 1122222 38999999999999 99999 9999
Q ss_pred CchhhhhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhh
Q psy15286 475 DEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRV 554 (707)
Q Consensus 475 fr~~~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (707)
|| |||| +|. +++
T Consensus 506 FR-----------------gFlq--~r~---~~~---------------------------------------------- 517 (645)
T KOG1158|consen 506 FR-----------------GFLQ--ERL---FLK---------------------------------------------- 517 (645)
T ss_pred hH-----------------HHHH--HHH---Hhh----------------------------------------------
Confidence 99 9999 888 642
Q ss_pred hhccc-ccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEE
Q psy15286 555 IKFGL-QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHF 632 (707)
Q Consensus 555 ~~~~~-~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~i 632 (707)
+.+. ...+ +|||||||+++.| ||++||+.+.+.|.++++.+||||++.+++.||||+|++++++||++|.+++|+|
T Consensus 518 -~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~i 595 (645)
T KOG1158|consen 518 -QQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHI 595 (645)
T ss_pred -hcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEE
Confidence 1111 2334 9999999999999 9999999998889999999999999844799999999999999999998789999
Q ss_pred EEeCChh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 633 YVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 633 YVCGp~~-M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
||||+++ |+++|.++|.+|+++.+++++++|.++++.|++++||++|||
T Consensus 596 YvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 596 YVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred EEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 9999996 999999999999999999999999999999999999999999
No 2
>KOG1159|consensus
Probab=100.00 E-value=4.9e-81 Score=668.76 Aligned_cols=454 Identities=26% Similarity=0.390 Sum_probs=376.0
Q ss_pred ChhccCceecccceeccCCC--CcHHHHHHHHHHHHHHHHHHcCCCCCC-cccccccccccccccCceeeeccCCCcccc
Q psy15286 1 MLGELGGERLLKLRAGDEMC--GQEQAFRSWAPEVFNVACETFCLDDDE-TLSDATQVISSVTLNASTVRFLPMTTADSL 77 (707)
Q Consensus 1 ~l~~lGa~r~~~~g~gD~~~--g~e~~f~~W~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (707)
||.+|||+.++++|+||||+ |+|++|.+|..+||..|...++..-.. ...+. . ....++++........+
T Consensus 112 RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~p~~~~t~l~~~-~------~~~~k~~~l~~~~~~~~ 184 (574)
T KOG1159|consen 112 RLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYPPYRPETDLIPT-V------QITTKYSLLELGKASDF 184 (574)
T ss_pred HHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcCCCCCcccCCCc-c------cccchhhhhhccccccC
Confidence 68899999999999999995 999999999999999999988722111 11111 1 11122333322221111
Q ss_pred cccccccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCC
Q psy15286 78 VTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDE 156 (707)
Q Consensus 78 ~~~~~~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~ 156 (707)
..+-.-.+++.-..++++.|++||+ .+|+|+|||++|++ ++.+.|+|||++.|+|.|+++.|++|++.+|| ++++
T Consensus 185 ~d~~~v~~~~~~~~~k~~~N~rlT~-~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl---~~~~ 260 (574)
T KOG1159|consen 185 SDSDIVLEPQGQIPAKLVENRRLTS-ADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGL---DEDQ 260 (574)
T ss_pred CcchhhhccccccccchhcceeecC-cchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCC---Chhh
Confidence 1110112333334589999999999 99999999999998 55899999999999999999999999999995 4444
Q ss_pred ceEecccccccccccccccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhh--chHHHH
Q psy15286 157 PMELQVLSETHTSTEVIKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLAT--DSAAYE 233 (707)
Q Consensus 157 ~i~l~~~~~~~~~~~~~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s--~~~~y~ 233 (707)
...+.+.++... .+..-+| |+|+..++++|+|+++.|+++||..|++|++++.||++|+++++ +.++|.
T Consensus 261 ~~~l~~~s~~~~--------~~~~~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~ 332 (574)
T KOG1159|consen 261 LKPLKISSNDRS--------SPLPLLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLY 332 (574)
T ss_pred ccccccccCccc--------ccccccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHH
Confidence 433433222110 0111355 89999999999999999999999999999999999999999987 567899
Q ss_pred HHhhcCCCCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccc
Q psy15286 234 DWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRH 313 (707)
Q Consensus 234 ~~~~~~~~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~ 313 (707)
+|+...++|++|+|++|+++++|+++|++.+|.|+||+|||||+|..++ ++|+|++|+|+|.. .+.|+|+||+|
T Consensus 333 dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~P~IrPR~fSIas~~~~~~--leL~VAiV~ykT~l--~~pRrGlCS~w-- 406 (574)
T KOG1159|consen 333 DYVNRPRRTILEVLEDFRSVKLPIDYLLDLLPVIRPRAFSIASSPGAHH--LELLVAIVEYKTIL--KEPRRGLCSNW-- 406 (574)
T ss_pred HHhcchhhhHHHHHHhchhccCCHHHHHHhccccccceeeeccCCCCCc--eeEEEEEEEEeeec--cccccchhHHH--
Confidence 9999999999999999999999999999999999999999999998776 99999999999998 67999999999
Q ss_pred cccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCcccccccccccccc
Q psy15286 314 WRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWN 393 (707)
Q Consensus 314 ~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (707)
|++|.+|+.+++.|
T Consensus 407 -----------------------l~sL~~g~~i~~~v------------------------------------------- 420 (574)
T KOG1159|consen 407 -----------------------LASLKPGDEIPIKV------------------------------------------- 420 (574)
T ss_pred -----------------------HhhcCCCCeEEEEE-------------------------------------------
Confidence 99999988776666
Q ss_pred ccCCCCCCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCC
Q psy15286 394 LYGSQPVAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGID 473 (707)
Q Consensus 394 ~~~~~~~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiA 473 (707)
+++ .+.+|.+++.|+|| ||||| |||
T Consensus 421 ----------------~~g--~l~~p~~~~~PlIm--------------VGPGT-----------------------GvA 445 (574)
T KOG1159|consen 421 ----------------RPG--TLYFPSDLNKPLIM--------------VGPGT-----------------------GVA 445 (574)
T ss_pred ----------------ecC--ccccCCCCCCCeEE--------------EcCCC-----------------------Ccc
Confidence 222 25778888999999 99999 999
Q ss_pred CCchhhhhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhh
Q psy15286 474 PDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSR 553 (707)
Q Consensus 474 Pfr~~~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (707)
||| +++| ||. ..
T Consensus 446 PfR-----------------a~i~--er~---~q---------------------------------------------- 457 (574)
T KOG1159|consen 446 PFR-----------------ALIQ--ERI---YQ---------------------------------------------- 457 (574)
T ss_pred cHH-----------------HHHH--HHH---hh----------------------------------------------
Confidence 999 9999 887 41
Q ss_pred hhhcccccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEE
Q psy15286 554 VIKFGLQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHF 632 (707)
Q Consensus 554 ~~~~~~~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~i 632 (707)
...+..||||||+++.| +|.+||.++.+.+ ++.|||||++ .|.||||.|+++++.+|+++.+.||.|
T Consensus 458 -------~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRDqe-~kvYVQh~i~e~g~~v~~Ll~~~gA~~ 525 (574)
T KOG1159|consen 458 -------GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRDQE-QKVYVQHKIRENGEEVWDLLDNLGAYF 525 (574)
T ss_pred -------ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccccc-cceeHHHHHHHhhHHHHHHHhccCCEE
Confidence 01345999999999999 9999999887654 4459999986 799999999999999999998899999
Q ss_pred EEeCCh-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 633 YVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 633 YVCGp~-~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
||||++ .|+.+|+++|.+|+.+++|.+.|.|. |++.|++.+||+.|+|
T Consensus 526 fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 526 FVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred EEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 999999 79999999999999999999766666 9999999999999999
No 3
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=1.8e-74 Score=638.99 Aligned_cols=403 Identities=47% Similarity=0.795 Sum_probs=347.9
Q ss_pred EEeEEeeccCCCCCCCcEEEEEeeCC--CCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEecccccccccc
Q psy15286 93 PLIKKWNLYGSQPVARTTLGIQMRKP--HDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTST 170 (707)
Q Consensus 93 ~V~~n~~Lt~~~~~~r~v~hiel~l~--~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~~~~~~~~~ 170 (707)
+|++|++||+ +++.|+++||+|++. ++++|+|||+|+|+|+|+++.|+++|++|++. .+.+..+.++...+.....
T Consensus 1 ~~~~~~~l~~-~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~ 78 (406)
T cd06202 1 KVISRQNLQS-PKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDA-PPPDQVIKLEVLEERSTAL 78 (406)
T ss_pred CcceeeecCC-CCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCC-CCCCceEEEEecCCCCccc
Confidence 3778999998 889999999999983 58999999999999999999999999999953 4677888877544332111
Q ss_pred cccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcCCCCHHHHHhhC
Q psy15286 171 EVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQF 250 (707)
Q Consensus 171 ~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~~~slldvL~~f 250 (707)
+....|......+|+|++++|++|+||+++|++.+|+.||.|++|+.+|++|++|+++.+.|.+|+..++++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~dvL~~f 158 (406)
T cd06202 79 GIIKTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGKGSSEYEDWKWYKNPNILEVLEEF 158 (406)
T ss_pred cccccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHhccCCCHHHHHHhC
Confidence 11112322233348999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCCCC
Q psy15286 251 PSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIH 330 (707)
Q Consensus 251 ~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps~~ 330 (707)
|++++|++.|++.+|+++||+|||||||..+|+.++|+|++++|.+..+.++.+.|+||+|
T Consensus 159 ~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~------------------- 219 (406)
T cd06202 159 PSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTW------------------- 219 (406)
T ss_pred CcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHH-------------------
Confidence 9999999999999999999999999999999999999999999998766667889999999
Q ss_pred CChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCCcEEEeec
Q psy15286 331 LPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFR 410 (707)
Q Consensus 331 ~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 410 (707)
|+.+++|+.+.+++ +
T Consensus 220 ------L~~l~~Gd~v~v~~-----------------------------------------------------------~ 234 (406)
T cd06202 220 ------LNGLTPGDTVPCFV-----------------------------------------------------------R 234 (406)
T ss_pred ------HHhCCCCCEEEEEE-----------------------------------------------------------e
Confidence 88888887766655 1
Q ss_pred cCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhhhccccCCc
Q psy15286 411 SDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTST 490 (707)
Q Consensus 411 ~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~~~~~~~~~ 490 (707)
++. .|++|.+.++|+|| ||+|| ||||||
T Consensus 235 ~~~-~F~lp~~~~~piIm--------------Ia~GT-----------------------GIAPfr-------------- 262 (406)
T cd06202 235 SAP-SFHLPEDPSVPVIM--------------VGPGT-----------------------GIAPFR-------------- 262 (406)
T ss_pred eCC-ccCCCCCCCCCEEE--------------EcCCc-----------------------ChHHHH--------------
Confidence 111 27899888899999 99999 999999
Q ss_pred ccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccCCceEEEEe
Q psy15286 491 EVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQELGKMTLFFG 570 (707)
Q Consensus 491 ~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~LffG 570 (707)
||+| +|. ... .. ....+...++++||||
T Consensus 263 ---sflq--~r~---~~~-------------------------------------~~-------~~~~~~~~g~v~L~~G 290 (406)
T cd06202 263 ---SFWQ--QRQ---YDL-------------------------------------RM-------SEDPGKKFGDMTLFFG 290 (406)
T ss_pred ---HHHH--HHH---HHh-------------------------------------hh-------cccccCCCCCEEEEEc
Confidence 9999 775 310 00 0011335689999999
Q ss_pred cCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhhHHHHHHHHH
Q psy15286 571 CQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLK 649 (707)
Q Consensus 571 ~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M~~~V~~~L~ 649 (707)
||+++.| +|++||++|.+.|.++++++||||++...++||||+|.++.+.+++++.+.+++|||||++.|+++|+++|.
T Consensus 291 ~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~ 370 (406)
T cd06202 291 CRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQ 370 (406)
T ss_pred CCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHH
Confidence 9999768 999999999999888789999999875468999999999999999988678899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEecccc
Q psy15286 650 YVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGITL 685 (707)
Q Consensus 650 ~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~~~ 685 (707)
+|+++++++++++|++|+++|+++|||++|||++++
T Consensus 371 ~i~~~~~~~s~~~A~~~~~~l~~~gRy~~dvw~~~~ 406 (406)
T cd06202 371 RILAEHGNMSAEEAEEFILKLRDENRYHEDIFGVTL 406 (406)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCeEEEeccccC
Confidence 999999999999999999999999999999999864
No 4
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-74 Score=656.20 Aligned_cols=427 Identities=33% Similarity=0.526 Sum_probs=369.1
Q ss_pred ChhccCceecccceeccCCCCcHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccCceeeeccCCCccccccc
Q psy15286 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISSVTLNASTVRFLPMTTADSLVTG 80 (707)
Q Consensus 1 ~l~~lGa~r~~~~g~gD~~~g~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (707)
+|+++||.|+.++++||++ +++++..+|...++..+...++......... .. + . ..
T Consensus 157 ~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~~~~~~~~~~~~~---~~-----------~-~--------~~ 212 (587)
T COG0369 157 RLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKSKFPGQEAAPAQV---AT-----------S-P--------QS 212 (587)
T ss_pred HHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHhhccccccccccc---cc-----------h-h--------cc
Confidence 4789999999999999998 8999999999999999988776443211000 00 0 0 00
Q ss_pred ccccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeCCC-CCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceE
Q psy15286 81 LSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKPH-DCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPME 159 (707)
Q Consensus 81 ~~~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~-~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~ 159 (707)
.+...+.+++.+.+..|++|+. .+++|+++|++|+++. +++|+|||+++|||.|+++.|++||+.+|| ++++.|.
T Consensus 213 ~~~~~~~~~~~a~~~~n~~l~~-~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl---~~~~~v~ 288 (587)
T COG0369 213 ESPYSKPAPSVAILLENRKLTG-RDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGL---DPEEPVT 288 (587)
T ss_pred cccccccCcceeEeeccccCCc-cccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCC---CCCceec
Confidence 1234466778999999999999 8999999999999954 999999999999999999999999999995 5555552
Q ss_pred ecccccccccccccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcC
Q psy15286 160 LQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWR 239 (707)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~ 239 (707)
+. -.++++.++|++|+|++..| +.|+..|+.|+.++..++.|..++ ...+..|. .
T Consensus 289 ~~--------------------~~~~~~~~~l~~~~e~~~~~-~~~~~~l~~~~~~~~~~~~l~~l~--~~~~~~~~--~ 343 (587)
T COG0369 289 VD--------------------GETLPLVEALKSHFEFTSAP-KSLLENLAHFAGQEELRRLLEQLD--IADLQDYA--K 343 (587)
T ss_pred cC--------------------CCcchHHHHHHHheecccch-HHHHHHHHHhcCCHHHHHHHHhhh--hHHHHhhh--c
Confidence 21 12788999999999999998 999999999999999999999887 33344443 4
Q ss_pred CCCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccH
Q psy15286 240 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHL 319 (707)
Q Consensus 240 ~~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~ 319 (707)
+.+++|+|++|+++++|++.|++.+|+|+||+|||||||..+++++||||.+|+|.+.. +.|.|+||+|
T Consensus 344 ~~~~~d~L~~f~~~~l~~~~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~---~~r~GvcS~~-------- 412 (587)
T COG0369 344 RRTLIDVLRDFPPAKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAEG---RERYGVCSGY-------- 412 (587)
T ss_pred cccHHHHHhhccccCCCHHHHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccCC---CcccccchHH--------
Confidence 77999999999999999999999999999999999999999999999999999999983 4899999999
Q ss_pred HHHhhhCCCCCCChHHHHhccCC-CCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCC
Q psy15286 320 LEVLEQFPSIHLPPALLVAQLTP-LQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQ 398 (707)
Q Consensus 320 ~d~l~~fps~~~~~~~lL~~L~~-g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (707)
|+.+.. |+
T Consensus 413 -----------------L~~~~~~g~------------------------------------------------------ 421 (587)
T COG0369 413 -----------------LADLLEEGD------------------------------------------------------ 421 (587)
T ss_pred -----------------HHhhhcCCC------------------------------------------------------
Confidence 765543 44
Q ss_pred CCCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchh
Q psy15286 399 PVAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPM 478 (707)
Q Consensus 399 ~~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~ 478 (707)
.++|+++++.+ |++|.|+++|||| ||||| ||||||
T Consensus 422 -----~i~v~v~~n~n-f~lp~~~~~PiIM--------------IG~GT-----------------------GIAPFR-- 456 (587)
T COG0369 422 -----TIPVFVQPNKN-FRLPEDPETPIIM--------------IGPGT-----------------------GIAPFR-- 456 (587)
T ss_pred -----eEEEEeccCCc-cccCCCCCCceEE--------------EcCCC-----------------------CchhHH--
Confidence 44555555544 9999999999999 99999 999999
Q ss_pred hhhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcc
Q psy15286 479 ELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFG 558 (707)
Q Consensus 479 ~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (707)
||+| +|. .
T Consensus 457 ---------------afvq--~r~---~---------------------------------------------------- 464 (587)
T COG0369 457 ---------------AFVQ--ERA---A---------------------------------------------------- 464 (587)
T ss_pred ---------------HHHH--HHH---h----------------------------------------------------
Confidence 9999 877 4
Q ss_pred cccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 559 LQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 559 ~~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
.+..|++|||||||+.++| +|++||++|.+.|.++++.+||||+++ +|.||||+|++++++||+++ ++||+|||||+
T Consensus 465 ~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~-~KiYVQd~lre~~del~~~l-~~ga~~YVCGd 542 (587)
T COG0369 465 NGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE-EKIYVQDRLREQADELWEWL-EEGAHIYVCGD 542 (587)
T ss_pred ccccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC-CCccHHHHHHHhHHHHHHHH-HCCCEEEEeCC
Confidence 2234689999999999999 999999999999988899999999985 79999999999999999998 56799999996
Q ss_pred h-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 638 C-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 638 ~-~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
+ .|.++|.++|.+|++++++++.|+|.+++++|++++||+.|||
T Consensus 543 ~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 543 AKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred CccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 5 8999999999999999999999999999999999999999999
No 5
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=3.1e-72 Score=644.73 Aligned_cols=426 Identities=28% Similarity=0.414 Sum_probs=361.1
Q ss_pred ChhccCceecccceeccCCCCcHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccCceeeeccCCCccccccc
Q psy15286 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISSVTLNASTVRFLPMTTADSLVTG 80 (707)
Q Consensus 1 ~l~~lGa~r~~~~g~gD~~~g~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (707)
||++|||+|++++|.+|+ ++|++|+.|++++|++|.+.++..... .. . ... .. .. .. .
T Consensus 171 rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~~~~~~~~~--~~--~---~~~---~~-----~~---~~--~ 228 (600)
T PRK10953 171 KLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKSRAPAVAAP--SQ--S---VAT---GA-----VN---EI--H 228 (600)
T ss_pred HHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHhhcCCcccc--cc--c---ccc---cc-----cc---cc--c
Confidence 589999999999999887 589999999999999998766532100 00 0 000 00 00 00 0
Q ss_pred ccccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceE
Q psy15286 81 LSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPME 159 (707)
Q Consensus 81 ~~~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~ 159 (707)
..++.+.+++.|+|+.|++||+ .+++|++|||||++ +++++|+|||+|+|+|.|+++.|+++|++||| ++++.|.
T Consensus 229 ~~~~~~~~p~~a~v~~n~~Lt~-~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l---~~~~~v~ 304 (600)
T PRK10953 229 TSPYSKEAPLTASLSVNQKITG-RNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWL---KGDEPVT 304 (600)
T ss_pred cCCCCCCCCeEEEEEEEeecCC-CCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCC---CCCCeEE
Confidence 1234567889999999999999 89999999999999 78899999999999999999999999999994 6788776
Q ss_pred ecccccccccccccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcC
Q psy15286 160 LQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWR 239 (707)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~ 239 (707)
+.. .++|++++|++|+||+.+ ++.+|+.+++++.++. |.++..+++.+.+|..
T Consensus 305 ~~~--------------------~~~tl~~~l~~~~dl~~~-~~~~l~~~a~~~~~~~----l~~~~~~~~~~~~~~~-- 357 (600)
T PRK10953 305 VDG--------------------KTLPLAEALQWHFELTVN-TANIVENYATLTRSET----LLPLVGDKAALQHYAA-- 357 (600)
T ss_pred eCC--------------------CCCCHHHHHHHhcccCCC-cHHHHHHHHHhCCCHH----HHHHhcCHHHHHHHhc--
Confidence 531 156899999999999985 7899999999998753 5555566666777754
Q ss_pred CCCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccH
Q psy15286 240 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHL 319 (707)
Q Consensus 240 ~~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~ 319 (707)
+.+++|+|++|| ++++++.+++++|+++||+|||||||..+|+++||||++|+|.+. ++.+.|+||+|
T Consensus 358 ~~~~~dvL~~f~-~~~~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~---g~~~~G~~S~~-------- 425 (600)
T PRK10953 358 TTPIVDMVRFAP-AQLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDIE---GRARAGGASSF-------- 425 (600)
T ss_pred CCCHHHHHHhCC-CCCCHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeecC---CCCcCceEhhh--------
Confidence 579999999997 799999999999999999999999999899999999999999853 67899999999
Q ss_pred HHHhhhCCCCCCChHHHHh-ccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCC
Q psy15286 320 LEVLEQFPSIHLPPALLVA-QLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQ 398 (707)
Q Consensus 320 ~d~l~~fps~~~~~~~lL~-~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (707)
|. .+++|+.+.+++
T Consensus 426 -----------------L~~~l~~Gd~v~v~~------------------------------------------------ 440 (600)
T PRK10953 426 -----------------LADRLEEEGEVRVFI------------------------------------------------ 440 (600)
T ss_pred -----------------hhhcCCCCCEEEEEe------------------------------------------------
Confidence 54 577777665554
Q ss_pred CCCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchh
Q psy15286 399 PVAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPM 478 (707)
Q Consensus 399 ~~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~ 478 (707)
+++ +.|++|.++++|||| ||+|| ||||||
T Consensus 441 -----------~~~-~~F~lp~~~~~piIm--------------Ig~GT-----------------------GIAPfr-- 469 (600)
T PRK10953 441 -----------EHN-DNFRLPANPETPVIM--------------IGPGT-----------------------GIAPFR-- 469 (600)
T ss_pred -----------ccC-CcccCCCCCCCCEEE--------------EecCc-----------------------CcHHHH--
Confidence 221 138999888999999 99999 999999
Q ss_pred hhhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcc
Q psy15286 479 ELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFG 558 (707)
Q Consensus 479 ~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (707)
||+| +|. .
T Consensus 470 ---------------sflq--~r~---~---------------------------------------------------- 477 (600)
T PRK10953 470 ---------------AFMQ--QRA---A---------------------------------------------------- 477 (600)
T ss_pred ---------------HHHH--HHH---H----------------------------------------------------
Confidence 9999 766 3
Q ss_pred cccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 559 LQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 559 ~~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
.+..+++|||||||++..| +|++||++|.++|.++++++||||++. .|+||||+|.++.+++|+++ .+|++|||||+
T Consensus 478 ~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~-~k~YVQ~~l~e~~~~l~~~l-~~ga~~YVCG~ 555 (600)
T PRK10953 478 DGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQK-EKIYVQDKLREQGAELWRWI-NDGAHIYVCGD 555 (600)
T ss_pred cCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCC-CCCcHHHHHHHHHHHHHHHH-HCCcEEEEECC
Confidence 1234789999999998889 999999999999999889999999975 69999999999999999988 67899999999
Q ss_pred h-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 638 C-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 638 ~-~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
+ .|+++|+++|.+|+++++|+++++|++|+++|+++|||++|||
T Consensus 556 ~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 556 ANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred CccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 8 6999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.5e-70 Score=609.42 Aligned_cols=403 Identities=33% Similarity=0.519 Sum_probs=346.0
Q ss_pred CCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCC-CCCceEeccc
Q psy15286 86 SRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGID-PDEPMELQVL 163 (707)
Q Consensus 86 ~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d-~d~~i~l~~~ 163 (707)
.++++.|+|++|++||+ + ++|+++||+|++ +.+++|+|||+|+|+|.|+++.|+++|++||| + ++..|.+...
T Consensus 2 ~~~~~~~~v~~~~~lt~-~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l---~~~~~~i~~~~~ 76 (416)
T cd06204 2 AKNPFLAPVAVSRELFT-G-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGL---DDRDTVISLKSL 76 (416)
T ss_pred CCCCeEeEEEEEeeccC-C-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCc---CCCCceEEeecC
Confidence 35678999999999999 6 999999999998 45899999999999999999999999999995 5 7888887643
Q ss_pred ccccccccccccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhh-hchHHHHHHhhcCCC
Q psy15286 164 SETHTSTEVIKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLA-TDSAAYEDWRHWRFP 241 (707)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~-s~~~~y~~~~~~~~~ 241 (707)
.+.. ....++| |+|++++|++|+||+++|++.+|+.||.|++|+.+|++|++|+ ++.+.|.+|+...++
T Consensus 77 ~~~~---------~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~ 147 (416)
T cd06204 77 DEPA---------SKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLASEGKDEYAKWIVEPHR 147 (416)
T ss_pred Cccc---------ccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHhcCHHHHHHHHhhcCC
Confidence 3211 1124577 8999999999999999999999999999999999999999999 577889999999999
Q ss_pred CHHHHHhhCCCCC---CChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCcccccccccccccccc
Q psy15286 242 HLLEVLEQFPSIH---LPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPH 318 (707)
Q Consensus 242 slldvL~~f~s~~---~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~ 318 (707)
+++|+|++||+++ +|++.|++.+|+++||+|||||||..+|+.++|||++++|.++. ++.+.|+||+|
T Consensus 148 ~~~dvL~~f~s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~--~~~~~G~~S~~------- 218 (416)
T cd06204 148 NLLEVLQDFPSAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPT--GRIIKGVATNW------- 218 (416)
T ss_pred CHHHHHHhCcccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCC--CCEEeeeehHH-------
Confidence 9999999999999 99999999999999999999999999999999999999999876 47899999999
Q ss_pred HHHHhhhCCCCCCChHHHHhccCCC---CceeEEecCCCCCCCCcceeEEEEEeecccccCccCcccccccccccccccc
Q psy15286 319 LLEVLEQFPSIHLPPALLVAQLTPL---QPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLY 395 (707)
Q Consensus 319 ~~d~l~~fps~~~~~~~lL~~L~~g---~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (707)
|..+.++ +...-. .|. .+.
T Consensus 219 ------------------L~~~~~~~~~~~~~~~-------------------~~~-~~~-------------------- 240 (416)
T cd06204 219 ------------------LLALKPALNGEKPPTP-------------------YYL-SGP-------------------- 240 (416)
T ss_pred ------------------HHhhhhhhcccccccc-------------------ccc-ccc--------------------
Confidence 6655432 110000 000 010
Q ss_pred CCCCCCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCC
Q psy15286 396 GSQPVAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPD 475 (707)
Q Consensus 396 ~~~~~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPf 475 (707)
.+...|+.|.|+++.+ .|++|.+..+|+|| ||+|| |||||
T Consensus 241 -~~~~~g~~v~v~~~~g--~F~lp~~~~~piIm--------------Ia~Gt-----------------------GIAP~ 280 (416)
T cd06204 241 -RKKGGGSKVPVFVRRS--NFRLPTKPSTPVIM--------------IGPGT-----------------------GVAPF 280 (416)
T ss_pred -cccCCCCeEEEEEecC--CCCCCCCCCCCEEE--------------EeCCc-----------------------chHHH
Confidence 1122467899999876 59999888899999 99999 99999
Q ss_pred chhhhhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhh
Q psy15286 476 EPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVI 555 (707)
Q Consensus 476 r~~~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (707)
| ||+| +|. ..
T Consensus 281 ~-----------------s~l~--~~~---~~------------------------------------------------ 290 (416)
T cd06204 281 R-----------------GFIQ--ERA---AL------------------------------------------------ 290 (416)
T ss_pred H-----------------HHHH--HHH---HH------------------------------------------------
Confidence 9 9999 765 31
Q ss_pred hcccccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEE
Q psy15286 556 KFGLQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYV 634 (707)
Q Consensus 556 ~~~~~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYV 634 (707)
...+...++++||||||++++| +|++||++|++.+..+++++||||++. .++||||+|.++.+.+++++ .++++|||
T Consensus 291 ~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~l~~a~Sr~~~-~k~yVq~~i~~~~~~~~~~l-~~~~~vYv 368 (416)
T cd06204 291 KESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELVTAFSREQP-KKVYVQHRLAEHAEQVWELI-NEGAYIYV 368 (416)
T ss_pred hhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCceEEEEEECcCCC-CCcchHHHHHHhHHHHHHHH-HcCCEEEE
Confidence 0112345899999999999668 999999999988765689999999875 68999999999888888876 56799999
Q ss_pred eCChh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 635 CGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 635 CGp~~-M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
|||++ |+++|+++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 369 CGp~~~M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 369 CGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred ECCcccchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 99997 999999999999999999999999999999999999999999
No 7
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=5.2e-70 Score=628.54 Aligned_cols=426 Identities=30% Similarity=0.444 Sum_probs=361.1
Q ss_pred ChhccCceecccceeccCCCCcHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccCceeeeccCCCccccccc
Q psy15286 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISSVTLNASTVRFLPMTTADSLVTG 80 (707)
Q Consensus 1 ~l~~lGa~r~~~~g~gD~~~g~e~~f~~W~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (707)
+|++|||+|++|+|.+|+ ++|++|++|++++|++|.+.++.... .+.. ....... . ..
T Consensus 168 ~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~~~~~~~----~~~~------------~~~~~~~--~--~~ 225 (597)
T TIGR01931 168 RLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQAKGSAS----TPSL------------SETPARS--Q--TA 225 (597)
T ss_pred HHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhhccCccC----CCcc------------eeccccc--c--cc
Confidence 588999999999999997 68999999999999999876542111 0000 0000000 0 01
Q ss_pred ccccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceE
Q psy15286 81 LSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPME 159 (707)
Q Consensus 81 ~~~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~ 159 (707)
...+.+++++.|+|+.|++||+ .+++|+++||||++ +++++|+|||+|+|+|.|+++.|+++|++|+ +++++.++
T Consensus 226 ~~~~~~~~p~~a~v~~n~~lt~-~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~---l~~~~~v~ 301 (597)
T TIGR01931 226 TSVYSKQNPFRAEVLENQKITG-RNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLN---LDPDEKVT 301 (597)
T ss_pred cCCccCCCCeEEEEEeeEecCC-CCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhC---CCCCCeEE
Confidence 2234577899999999999999 89999999999998 6789999999999999999999999999999 47788776
Q ss_pred ecccccccccccccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcC
Q psy15286 160 LQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWR 239 (707)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~ 239 (707)
+. . +++|++++|++|+||+. +++.+|+.||+++.++..++ +.++.+.|.+|+.
T Consensus 302 ~~---~-----------------~~~tl~~~l~~~~dl~~-~~~~~l~~la~~~~~~~l~~----~~~~~~~~~~y~~-- 354 (597)
T TIGR01931 302 IG---G-----------------KTIPLFEALITHFELTQ-NTKPLLKAYAELTGNKELKA----LIADNEKLKAYIQ-- 354 (597)
T ss_pred eC---C-----------------CCcCHHHHHHhceeCCC-CCHHHHHHHHHhcCCHHHHH----HhcCHHHHHHHHc--
Confidence 53 0 15799999999999998 48999999999999986444 4456667888875
Q ss_pred CCCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccH
Q psy15286 240 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHL 319 (707)
Q Consensus 240 ~~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~ 319 (707)
+++++|+|++|| +++++..+++++|+++||+|||||||..+++++||+|++|+|... ++.+.|+||+|
T Consensus 355 ~~~~~dvl~~fp-~~~~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~---~~~~~G~~S~~-------- 422 (597)
T TIGR01931 355 NTPLIDLIRDYP-ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQAH---GRARLGGASGF-------- 422 (597)
T ss_pred CCCHHHHHHHCC-CCCCHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecCC---CCccccchhHH--------
Confidence 579999999999 899999999999999999999999999889999999999999854 67899999999
Q ss_pred HHHhhhCCCCCCChHHHHhc-cCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCC
Q psy15286 320 LEVLEQFPSIHLPPALLVAQ-LTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQ 398 (707)
Q Consensus 320 ~d~l~~fps~~~~~~~lL~~-L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (707)
|+. +++|+.+.+++
T Consensus 423 -----------------L~~~l~~Gd~v~v~~------------------------------------------------ 437 (597)
T TIGR01931 423 -----------------LAERLKEGDTVPVYI------------------------------------------------ 437 (597)
T ss_pred -----------------HHhhCCCCCEEEEEE------------------------------------------------
Confidence 765 88877766654
Q ss_pred CCCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchh
Q psy15286 399 PVAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPM 478 (707)
Q Consensus 399 ~~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~ 478 (707)
+++ ..|++|.++++|+|| ||+|| ||||||
T Consensus 438 -----------~~~-~~F~lp~~~~~piIm--------------Ig~GT-----------------------GIAPfr-- 466 (597)
T TIGR01931 438 -----------EPN-DNFRLPEDPDTPIIM--------------IGPGT-----------------------GVAPFR-- 466 (597)
T ss_pred -----------eeC-CcccCCCCCCCCEEE--------------EcCCc-----------------------CchhHH--
Confidence 221 138999888999999 99999 999999
Q ss_pred hhhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcc
Q psy15286 479 ELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFG 558 (707)
Q Consensus 479 ~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (707)
||+| +|. .
T Consensus 467 ---------------sflq--~r~---~---------------------------------------------------- 474 (597)
T TIGR01931 467 ---------------AFMQ--ERA---E---------------------------------------------------- 474 (597)
T ss_pred ---------------HHHH--HHH---H----------------------------------------------------
Confidence 9999 765 2
Q ss_pred cccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeC-
Q psy15286 559 LQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCG- 636 (707)
Q Consensus 559 ~~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCG- 636 (707)
.+..+++|||||||+..+| +|++||+.|.+++.++++++||||++. .++||||+|.++.+.+++++ .++++|||||
T Consensus 475 ~~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~-~k~yVqd~l~e~~~~~~~~l-~~~a~vYvCG~ 552 (597)
T TIGR01931 475 DGAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQA-EKIYVQHRIREQGAELWQWL-QEGAHIYVCGD 552 (597)
T ss_pred ccCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCC-CCccHHHHHHHhHHHHHHHH-hCCcEEEEECC
Confidence 1234789999999997678 999999999999988889999999764 68999999999999999987 5689999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 637 DCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 637 p~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
++.|+++|+++|.+++++++++++++|++|+++|+++|||++|||
T Consensus 553 ~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 553 AKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred CccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 558999999999999999999999999999999999999999999
No 8
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=1.1e-69 Score=599.43 Aligned_cols=384 Identities=32% Similarity=0.526 Sum_probs=332.7
Q ss_pred EEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEeccccccccccc
Q psy15286 93 PLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTE 171 (707)
Q Consensus 93 ~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~~~~~~~~~~ 171 (707)
+|++|++||+ ++++|+++||+|++ +++++|+|||+|+|+|.|++++|++++++|||. .++|..+.++....+..
T Consensus 1 ~v~~~~~lt~-~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~-~~~~~~~~~~~~~~~~~--- 75 (398)
T cd06203 1 PISSAKKLTE-GDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLL-EQADQPCEVKVVPNTKK--- 75 (398)
T ss_pred CcccceEECC-CCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCC-CCCCCEEEEEecCCccc---
Confidence 3788999999 89999999999998 678999999999999999999999999999963 34888888864222111
Q ss_pred ccccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhh--chHHHHHHhhcCCCCHHHHHh
Q psy15286 172 VIKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLAT--DSAAYEDWRHWRFPHLLEVLE 248 (707)
Q Consensus 172 ~~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s--~~~~y~~~~~~~~~slldvL~ 248 (707)
..+..+.++| ++|++++|++|+||+++|+++||+.||+||+|+.+|++|++|++ +.+.|.+|+...+++++|+|+
T Consensus 76 --~~~~~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~ 153 (398)
T cd06203 76 --KNAKVPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLE 153 (398)
T ss_pred --cccccCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHH
Confidence 1123344667 89999999999999999999999999999999999999999996 677899999999999999999
Q ss_pred hCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCC
Q psy15286 249 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPS 328 (707)
Q Consensus 249 ~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps 328 (707)
+||++++|++.|++.+|+++||+|||||+|..+|+.++|+|+++.+.+ .|+||+|
T Consensus 154 ~f~s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~--------~G~~S~~----------------- 208 (398)
T cd06203 154 AFPSCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA--------KGLCTSW----------------- 208 (398)
T ss_pred hCCCCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC--------CChhhHH-----------------
Confidence 999999999999999999999999999999988999999999998854 6999999
Q ss_pred CCCChHHHHhccC-----CCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCC
Q psy15286 329 IHLPPALLVAQLT-----PLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFA 403 (707)
Q Consensus 329 ~~~~~~~lL~~L~-----~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (707)
|..+. +|+.+.+++
T Consensus 209 --------L~~l~~~~~~~G~~v~i~~----------------------------------------------------- 227 (398)
T cd06203 209 --------LESLCLSASSHGVKVPFYL----------------------------------------------------- 227 (398)
T ss_pred --------HHHhhhhhcCCCCEEEEEE-----------------------------------------------------
Confidence 77665 555544433
Q ss_pred cEEEeeccCCCCCCCCCC-CCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhh
Q psy15286 404 PVTVQFRSDQKDSSRESD-GSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQV 482 (707)
Q Consensus 404 ~~~~~~r~~~~~f~lp~~-~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~ 482 (707)
+++ +.|++|.+ .++|+|| ||+|| ||||||
T Consensus 228 ------~~~-g~F~lp~~~~~~piIm--------------Ia~Gt-----------------------GIAP~r------ 257 (398)
T cd06203 228 ------RSS-SRFRLPPDDLRRPIIM--------------VGPGT-----------------------GVAPFL------ 257 (398)
T ss_pred ------ecC-CCcCCCCcCCCCCEEE--------------EcCCc-----------------------ChHHHH------
Confidence 221 24889877 7899999 99999 999999
Q ss_pred hccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccC
Q psy15286 483 LSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQEL 562 (707)
Q Consensus 483 ~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (707)
||+| +|. ..+ + +......
T Consensus 258 -----------s~lq--~~~---~~~----------------------------------------~------~~~~~~~ 275 (398)
T cd06203 258 -----------GFLQ--HRE---KLK----------------------------------------E------SHTETVF 275 (398)
T ss_pred -----------HHHH--HHH---HHH----------------------------------------h------hcccCCC
Confidence 9999 766 311 0 0113456
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCC--CccchhhHHHhhHHHHHHHhhcCCcEEEEeCCh-
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI--PKTYVQDLMKKEASMLYRELIKEGGHFYVCGDC- 638 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~--~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~- 638 (707)
++++||||||+++.| +|.+||++|.+.|.++++++||||++.. .++||||+|.++.+.+++++.+.+++|||||++
T Consensus 276 ~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~ 355 (398)
T cd06203 276 GEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAK 355 (398)
T ss_pred CCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcc
Confidence 899999999999768 9999999999998887899999998752 489999999999999999876678999999996
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 639 TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 639 ~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
.|+++|+++|.+|+++++|+++++|++|+++|+++|||++|||
T Consensus 356 ~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~dvw 398 (398)
T cd06203 356 GMAKDVRDTFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398 (398)
T ss_pred hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 7999999999999999999999999999999999999999999
No 9
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=8.2e-69 Score=590.01 Aligned_cols=375 Identities=31% Similarity=0.491 Sum_probs=330.8
Q ss_pred EeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEecccccccccccc
Q psy15286 94 LIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEV 172 (707)
Q Consensus 94 V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~~~~~~~~~~~ 172 (707)
|++|++||+ .+++|+++||+|++ +++++|+|||+|+|+|.|+++.|+++|++|| +++++.++++.....
T Consensus 2 v~~~~~lt~-~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~---l~~~~~~~~~~~~~~------ 71 (382)
T cd06207 2 VTENKRLTP-ADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLG---LDGDDVVRVEPNEQQ------ 71 (382)
T ss_pred cceeeecCC-CCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhC---CCCCCeEEEeccccc------
Confidence 678999999 89999999999998 6799999999999999999999999999999 478888887653311
Q ss_pred cccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhh--chHHHHHHhhcCCCCHHHHHhh
Q psy15286 173 IKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLAT--DSAAYEDWRHWRFPHLLEVLEQ 249 (707)
Q Consensus 173 ~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s--~~~~y~~~~~~~~~slldvL~~ 249 (707)
....++| |+|++++|++|+||+++|++.+|+.||.|++|+.+|++|.++++ +.+.|.+| ++++++|+|++
T Consensus 72 ----~~~~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~ 144 (382)
T cd06207 72 ----RGKPPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKD 144 (382)
T ss_pred ----ccCCCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHh
Confidence 1124567 89999999999999999999999999999999999999999987 34557666 67899999999
Q ss_pred CCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCCC
Q psy15286 250 FPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSI 329 (707)
Q Consensus 250 f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps~ 329 (707)
|+++++|++.|++.+|+++||+|||||||..+++.++|+|++++|.+.. ++.+.|+||+|
T Consensus 145 f~~~~~~~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~--~~~~~G~~S~~------------------ 204 (382)
T cd06207 145 FPSVRPTLEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPS--GRSRYGLCSSY------------------ 204 (382)
T ss_pred CCcCCCCHHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCC--CCeecccHHHH------------------
Confidence 9999999999999999999999999999998899999999999999876 46789999999
Q ss_pred CCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCCcEEEee
Q psy15286 330 HLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQF 409 (707)
Q Consensus 330 ~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (707)
|..+++|+.+.+++
T Consensus 205 -------L~~l~~Gd~v~v~~----------------------------------------------------------- 218 (382)
T cd06207 205 -------LAGLKVGQRVTVFI----------------------------------------------------------- 218 (382)
T ss_pred -------HhhcCCCCEEEEEE-----------------------------------------------------------
Confidence 88888887765554
Q ss_pred ccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhhhccccCC
Q psy15286 410 RSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTS 489 (707)
Q Consensus 410 r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~~~~~~~~ 489 (707)
+.+ .|++|.+.++|+|| ||+|| ||||||
T Consensus 219 p~g--~F~lp~~~~~plIm--------------Ia~Gt-----------------------GIAP~r------------- 246 (382)
T cd06207 219 KKS--SFKLPKDPKKPIIM--------------VGPGT-----------------------GLAPFR------------- 246 (382)
T ss_pred ECC--cccCCCCCCCCEEE--------------EcCCc-----------------------cHHHHH-------------
Confidence 111 37898888899999 99999 999999
Q ss_pred cccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccCCceEEEE
Q psy15286 490 TEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQELGKMTLFF 569 (707)
Q Consensus 490 ~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~Lff 569 (707)
||+| +|. .+. ..+...++++|||
T Consensus 247 ----s~l~--~~~---~~~------------------------------------------------~~~~~~~~~~L~~ 269 (382)
T cd06207 247 ----AFLQ--ERA---ALL------------------------------------------------AQGPEIGPVLLYF 269 (382)
T ss_pred ----HHHH--HHH---HHh------------------------------------------------hcCccCCCEEEEE
Confidence 9999 766 310 1134568999999
Q ss_pred ecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChh-hHHHHHHH
Q psy15286 570 GCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCT-MAEHVYQT 647 (707)
Q Consensus 570 G~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~-M~~~V~~~ 647 (707)
|||+++.| +|++||++|.+.+.++++++||||++. .++||||+|.++.+.+++++.+.+++||||||++ |+++|+++
T Consensus 270 G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~-~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~ 348 (382)
T cd06207 270 GCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP-KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEA 348 (382)
T ss_pred CCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC-CceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHH
Confidence 99999678 999999999998887789999999875 6899999999998889988744445999999997 99999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 648 LKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 648 L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
|.+++.+++++++++|++++++|+++|||++|||
T Consensus 349 L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 349 FEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9999999999999999999999999999999999
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=1.1e-67 Score=581.60 Aligned_cols=378 Identities=30% Similarity=0.439 Sum_probs=331.3
Q ss_pred EEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEecccccccccccc
Q psy15286 93 PLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEV 172 (707)
Q Consensus 93 ~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~~~~~~~~~~~ 172 (707)
+|+.|++||+ ++++|+++|++|+++.+++|+|||+|+|+|.|+++.|+++|++||| ++++.|+++....+
T Consensus 1 ~v~~~~~lt~-~~~~~~~~~~~~~~~~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l---~~~~~i~i~~~~~~------ 70 (384)
T cd06206 1 TVVENRELTA-PGVGPSKRHLELRLPDGMTYRAGDYLAVLPRNPPELVRRALRRFGL---AWDTVLTISASGSA------ 70 (384)
T ss_pred CeeeEEEcCC-CCCCccEEEEEEECCCCCccCCCCEEEEECCCCHHHHHHHHHHhCC---CccCEEEEecCCCC------
Confidence 4789999999 8999999999999977999999999999999999999999999994 67888887642211
Q ss_pred cccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcCCCCHHHHHhhCC
Q psy15286 173 IKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQFP 251 (707)
Q Consensus 173 ~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~~~slldvL~~f~ 251 (707)
...++| |+|++++|++|+||+++|++.||+.||+||+|+.+|++|..+++ +.|.++++..+++++|+|++||
T Consensus 71 -----~~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~--~~~~~~~~~~~~~~~d~l~~f~ 143 (384)
T cd06206 71 -----TGLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAG--EAYAAEVLAKRVSVLDLLERFP 143 (384)
T ss_pred -----CCCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhh--hHHHHHHHhcCCCHHHHHHhCC
Confidence 112445 89999999999999999999999999999999999999998864 5688888888899999999999
Q ss_pred CCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCCCCC
Q psy15286 252 SIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHL 331 (707)
Q Consensus 252 s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps~~~ 331 (707)
++++|++++++++|+++||+|||||+|..+++.++|+|++++|.+..+ .+.+.|+||+|
T Consensus 144 s~~~~~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~-~~~~~G~~S~~-------------------- 202 (384)
T cd06206 144 SIALPLATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSG-QGRYRGVASSY-------------------- 202 (384)
T ss_pred CCCCCHHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCC-CceeeeehHHH--------------------
Confidence 999999999999999999999999999888999999999999987653 25689999999
Q ss_pred ChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCCcEEEeecc
Q psy15286 332 PPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRS 411 (707)
Q Consensus 332 ~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 411 (707)
|+.+++|+.+.++| ++.
T Consensus 203 -----L~~l~~Gd~v~v~i----------------------~~p------------------------------------ 219 (384)
T cd06206 203 -----LSSLRPGDSIHVSV----------------------RPS------------------------------------ 219 (384)
T ss_pred -----HhhCCCCCeEEEEE----------------------ecC------------------------------------
Confidence 88888888776665 111
Q ss_pred CCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhhhccccCCcc
Q psy15286 412 DQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTE 491 (707)
Q Consensus 412 ~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~~~~~~~~~~ 491 (707)
.+.|++|.+..+|+|| ||+|| ||||||
T Consensus 220 -~g~F~l~~~~~~piIm--------------Ia~Gt-----------------------GIAP~~--------------- 246 (384)
T cd06206 220 -HSAFRPPSDPSTPLIM--------------IAAGT-----------------------GLAPFR--------------- 246 (384)
T ss_pred -CCccCCCCCCCCCEEE--------------EeCCC-----------------------CcHHHH---------------
Confidence 1237888877899999 99999 999999
Q ss_pred cccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccCCceEEEEec
Q psy15286 492 VIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQELGKMTLFFGC 571 (707)
Q Consensus 492 ~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~LffG~ 571 (707)
||++ +|. .. ...+...++++|||||
T Consensus 247 --s~l~--~~~---~~------------------------------------------------~~~~~~~~~v~L~~G~ 271 (384)
T cd06206 247 --GFLQ--ERA---AL------------------------------------------------LAQGRKLAPALLFFGC 271 (384)
T ss_pred --HHHH--HHH---HH------------------------------------------------HhcCCCcCCEEEEEeC
Confidence 9999 665 31 0013345899999999
Q ss_pred CCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhhHHHHHHHHHH
Q psy15286 572 QLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKY 650 (707)
Q Consensus 572 R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M~~~V~~~L~~ 650 (707)
|+++.| +|.+||++|++.+.+ ++++||||++.+.++||||+|.++.+.+++++ .++++||||||++|+++|.++|.+
T Consensus 272 R~~~~d~ly~~el~~~~~~~~~-~l~~a~Sr~~~~~~~yVq~~i~~~~~~~~~~~-~~~~~vyiCGp~~M~~~v~~~L~~ 349 (384)
T cd06206 272 RHPDHDDLYRDELEEWEAAGVV-SVRRAYSRPPGGGCRYVQDRLWAEREEVWELW-EQGARVYVCGDGRMAPGVREVLKR 349 (384)
T ss_pred CCCCcccchHHHHHHHHHCCCe-EEEEEecccCCCCCEechhhHHhhHHHHHHHH-HCCcEEEEECCCchHHHHHHHHHH
Confidence 999668 999999999988877 89999999875348999999998888888866 578999999999999999999999
Q ss_pred HHHHhC----CCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 651 VFQHEG----NLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 651 il~~~~----~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
++.+.+ |+++++|++|+++|+++|||++|||
T Consensus 350 i~~~~~~~~~~~~~~~A~~~~~~l~~~gry~~dvw 384 (384)
T cd06206 350 IYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384 (384)
T ss_pred HHHHhCcccCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999 9999999999999999999999999
No 11
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=4.3e-64 Score=567.20 Aligned_cols=366 Identities=29% Similarity=0.463 Sum_probs=316.3
Q ss_pred cccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEe
Q psy15286 82 SKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMEL 160 (707)
Q Consensus 82 ~~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l 160 (707)
..++.++++.++|+.|++||+ ++++|+++||+|++ +++++|+|||+|+|+|.|+++.|+++|++||| +++..+
T Consensus 161 ~~~~~~~p~~a~v~~n~~Lt~-~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl---~~~~~~-- 234 (530)
T PRK06214 161 LGTSRDNPVEATFLSRRRLNK-PGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGA---PPEFPI-- 234 (530)
T ss_pred CccCcCCCEEEEEEeEEEcCC-CCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCC---CccCcc--
Confidence 345678899999999999999 89999999999998 57899999999999999999999999999995 444321
Q ss_pred cccccccccccccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcCC
Q psy15286 161 QVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRF 240 (707)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~~ 240 (707)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++....+.. ...
T Consensus 235 ----------------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~---~~~ 287 (530)
T PRK06214 235 ----------------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD---AAT 287 (530)
T ss_pred ----------------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh---hhh
Confidence 2579999999999999975 889999999988765 7778777753211111 123
Q ss_pred CCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHH
Q psy15286 241 PHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLL 320 (707)
Q Consensus 241 ~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~ 320 (707)
.+++|+|++||++++|++.+++.+|+++||+|||||||..+++.++|+|++|+|.+. ++.+.|+||+|
T Consensus 288 ~~vldvL~~fp~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~---~~~~~G~~S~~--------- 355 (530)
T PRK06214 288 LDVLAALEKFPGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEIG---SRLRLGVASTF--------- 355 (530)
T ss_pred CcHHHHHHhCCCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeeccC---CccccchhhHH---------
Confidence 589999999999999999999999999999999999999889999999999999863 56789999999
Q ss_pred HHhhhCCCCCCChHHHHh-ccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCC
Q psy15286 321 EVLEQFPSIHLPPALLVA-QLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQP 399 (707)
Q Consensus 321 d~l~~fps~~~~~~~lL~-~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (707)
|. .+++|+.+.+++
T Consensus 356 ----------------L~~~l~~Gd~V~v~i------------------------------------------------- 370 (530)
T PRK06214 356 ----------------LGERLAPGTRVRVYV------------------------------------------------- 370 (530)
T ss_pred ----------------HHhcCCCCCEEEEEe-------------------------------------------------
Confidence 64 678777665554
Q ss_pred CCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhh
Q psy15286 400 VAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPME 479 (707)
Q Consensus 400 ~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~ 479 (707)
+++. .|++|.+.++|+|| ||+|| ||||||
T Consensus 371 ----------~~~~-gF~lp~~~~~PiIm--------------Ig~GT-----------------------GIAPfr--- 399 (530)
T PRK06214 371 ----------QKAH-GFALPADPNTPIIM--------------VGPGT-----------------------GIAPFR--- 399 (530)
T ss_pred ----------cCCC-CCccCCCCCCCEEE--------------EcCCe-----------------------eHHHHH---
Confidence 2221 27899888899999 99999 999999
Q ss_pred hhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhccc
Q psy15286 480 LQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGL 559 (707)
Q Consensus 480 ~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (707)
||+| +|. ..
T Consensus 400 --------------sfLq--~r~---~~---------------------------------------------------- 408 (530)
T PRK06214 400 --------------AFLH--ERA---AT---------------------------------------------------- 408 (530)
T ss_pred --------------HHHH--HHH---Hh----------------------------------------------------
Confidence 9999 765 21
Q ss_pred ccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCCh
Q psy15286 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDC 638 (707)
Q Consensus 560 ~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~ 638 (707)
...+++|||||||+.+.| +|++||++|.+.|.+++++++|||++. .++||||+|.++.+++|+++ .++++||||||.
T Consensus 409 ~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~-~k~YVQ~~L~e~~~~l~~~l-~~~a~iYVCGp~ 486 (530)
T PRK06214 409 KAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGE-EKTYVQDRMRENGAELWKWL-EEGAHFYVCGDA 486 (530)
T ss_pred cCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCC-CCCchhhHHHHHHHHHHhhh-cCCcEEEEeCCh
Confidence 123789999999988788 999999999998888789999999874 68999999999999999977 678999999998
Q ss_pred h-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 639 T-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 639 ~-M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
+ |+++|+++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 487 ~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY~~Dvw 530 (530)
T PRK06214 487 KRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY 530 (530)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 5 779999999999999999999999999999999999999999
No 12
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=9.2e-64 Score=545.80 Aligned_cols=353 Identities=35% Similarity=0.526 Sum_probs=306.7
Q ss_pred EEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEeccccccccccc
Q psy15286 93 PLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTE 171 (707)
Q Consensus 93 ~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~~~~~~~~~~ 171 (707)
+|+.|++||+ ++++++++||+|++ +++++|+|||+|+|+|.|+++.|+++|++||| +++..+.+
T Consensus 1 ~v~~~~~lt~-~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l---~~~~~~~~----------- 65 (360)
T cd06199 1 TVLENRLLTG-PGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGL---SGDEPVST----------- 65 (360)
T ss_pred CcceeEeCCC-CCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCc---CCCCeEeC-----------
Confidence 4778999999 89999999999998 45899999999999999999999999999994 56665431
Q ss_pred ccccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcCCCCHHHHHhhC
Q psy15286 172 VIKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQF 250 (707)
Q Consensus 172 ~~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~~~slldvL~~f 250 (707)
+.| ++|++++|++|+||+++ .++.|+.||+++.++++|.. ++.+.|.+ +.+++|+|++|
T Consensus 66 ---------~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~--~~~~~~~~-----~~~~~d~L~~f 125 (360)
T cd06199 66 ---------VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL--AALEAVLA-----FAELRDVLDLL 125 (360)
T ss_pred ---------CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh--cCHHHHHc-----cCcHHHHHHhc
Confidence 123 78999999999999987 55568889988888887765 55555654 47999999999
Q ss_pred C--CCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCC
Q psy15286 251 P--SIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPS 328 (707)
Q Consensus 251 ~--s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps 328 (707)
| ++++|+.++++++|+++||+|||||+|..++++++++|++++|.+. ++.+.|+||+|
T Consensus 126 ~~~~~~~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~---~~~~~G~~S~~----------------- 185 (360)
T cd06199 126 PIPPARLTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH---GRERKGVASTF----------------- 185 (360)
T ss_pred cccCCCCCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC---CCccceehhHH-----------------
Confidence 9 9999999999999999999999999999889999999999999885 45688999999
Q ss_pred CCCChHHHHhcc-CCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCCcEEE
Q psy15286 329 IHLPPALLVAQL-TPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTV 407 (707)
Q Consensus 329 ~~~~~~~lL~~L-~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (707)
|..+ ++|+.+.+++
T Consensus 186 --------L~~~~~~Gd~v~v~~--------------------------------------------------------- 200 (360)
T cd06199 186 --------LADRLKEGDTVPVFV--------------------------------------------------------- 200 (360)
T ss_pred --------HHhcCCCCCEEEEEE---------------------------------------------------------
Confidence 7654 5777665554
Q ss_pred eeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhhhcccc
Q psy15286 408 QFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETH 487 (707)
Q Consensus 408 ~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~~~~~~ 487 (707)
+++ ..|++|.+.++|+|| ||+|| ||||||
T Consensus 201 --~~~-~~F~lp~~~~~piIm--------------Ia~Gt-----------------------GIAP~~----------- 229 (360)
T cd06199 201 --QPN-PHFRLPEDPDAPIIM--------------VGPGT-----------------------GIAPFR----------- 229 (360)
T ss_pred --ecC-CCcCCCCCCCCCEEE--------------EecCc-----------------------ChHHHH-----------
Confidence 111 138899888899999 99999 999999
Q ss_pred CCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccCCceEE
Q psy15286 488 TSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQELGKMTL 567 (707)
Q Consensus 488 ~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~L 567 (707)
||+| +|. . ....++++|
T Consensus 230 ------s~l~--~~~---~----------------------------------------------------~~~~~~~~L 246 (360)
T cd06199 230 ------AFLQ--ERE---A----------------------------------------------------TGAKGKNWL 246 (360)
T ss_pred ------HHHH--HHH---h----------------------------------------------------ccCCCcEEE
Confidence 9999 665 2 123478999
Q ss_pred EEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCCh-hhHHHHH
Q psy15286 568 FFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDC-TMAEHVY 645 (707)
Q Consensus 568 ffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~-~M~~~V~ 645 (707)
|||||+++.| +|++||++|++.+.++++++||||++. .++||||+|.++.+.+++++ .++++||||||+ .|+++|+
T Consensus 247 ~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr~~~-~~~yVq~~l~~~~~~~~~~~-~~~~~vYvCG~~~~M~~~V~ 324 (360)
T cd06199 247 FFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSRDQA-EKVYVQDRMREQGAELWAWL-EEGAHFYVCGDAKRMAKDVD 324 (360)
T ss_pred EEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEccCCC-CCccHHHHHHHhHHHHHHHH-hCCCEEEEECCCccccHHHH
Confidence 9999998778 999999999988777689999999875 68999999999998998876 567999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 646 QTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 646 ~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus 325 ~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 325 AALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 999999999999999999999999999999999999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=9.5e-45 Score=370.39 Aligned_cols=214 Identities=37% Similarity=0.624 Sum_probs=177.1
Q ss_pred ccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeC-CCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEec
Q psy15286 83 KVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRK-PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQ 161 (707)
Q Consensus 83 ~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l-~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~ 161 (707)
+++.++++.|+|++|++||+ ++++|+++||+|++ +++++|+|||+|+|+|.|+++.|++++++||+ ++|+.|.+.
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~-~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl---~~d~~v~~~ 77 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTS-PGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGL---DPDEPVTLK 77 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SS-TTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTS---GTTSEEEEE
T ss_pred CcCCCCCEEEEEEeEEEcCC-CCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCC---CcceEEEEE
Confidence 35678899999999999999 89999999999998 57999999999999999999999999999994 679999998
Q ss_pred ccccccccccccccCCCCCCCC-cccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhc--hHHHHHHhhc
Q psy15286 162 VLSETHTSTEVIKSWKPHERLP-RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATD--SAAYEDWRHW 238 (707)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~P-p~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~--~~~y~~~~~~ 238 (707)
...+. .....++| ++|++++|++|+||+++|+++||+.||+|++|+.+|++|++|++. .+.|.+|+..
T Consensus 78 ~~~~~---------~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~ 148 (219)
T PF00667_consen 78 PKEQN---------NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWR 148 (219)
T ss_dssp ESSTT---------SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTT
T ss_pred ecccc---------cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhc
Confidence 65432 11234567 999999999999999999999999999999999999999999985 7889999988
Q ss_pred CCCCHHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccc
Q psy15286 239 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDW 311 (707)
Q Consensus 239 ~~~slldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~ 311 (707)
.+++++|+|++||++++|++.|++++|+|+||+|||||||..+|++++|||++|+|.+.. ++.|.|+||+|
T Consensus 149 ~~~t~~dil~~fps~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~--g~~r~G~cS~y 219 (219)
T PF00667_consen 149 ERRTLLDILEDFPSCKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPR--GRIRRGVCSSY 219 (219)
T ss_dssp TTHCHHHHHHHSTTBTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTT--SSEEE-HHHHH
T ss_pred ccCcHHHHHhhCcccCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCC--CCeeEeeCCCC
Confidence 889999999999999999999999999999999999999999999999999999998865 78999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=1.1e-34 Score=316.00 Aligned_cols=276 Identities=20% Similarity=0.285 Sum_probs=220.4
Q ss_pred ccCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEecc
Q psy15286 83 KVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQV 162 (707)
Q Consensus 83 ~~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~ 162 (707)
.+.+++|+.++|+.|.+|+. ++...+++||+|+.+..+.|.||..++|.|...
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~-~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~-------------------------- 136 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITG-DDAPGETWHMVFSTEGEIPYREGQSIGVIPDGI-------------------------- 136 (367)
T ss_pred eeccCCCeEEEEEeeccccc-CCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCc--------------------------
Confidence 34578999999999999999 788889999999987789999999999976410
Q ss_pred cccccccccccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcCCCC
Q psy15286 163 LSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPH 242 (707)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~~~s 242 (707)
|..+
T Consensus 137 ---------------------------------~~~g------------------------------------------- 140 (367)
T PLN03115 137 ---------------------------------DKNG------------------------------------------- 140 (367)
T ss_pred ---------------------------------CCCC-------------------------------------------
Confidence 0000
Q ss_pred HHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCC---CCCeEEEEEEEEEeeccCCCCCccccccccccccccccH
Q psy15286 243 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLA---HPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHL 319 (707)
Q Consensus 243 lldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~---~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~ 319 (707)
.++.+|.|||||+|.. .++.++|+|..+.|.+.. +....|+||+|
T Consensus 141 ----------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~--g~~~~G~~S~~-------- 188 (367)
T PLN03115 141 ----------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQ--GEIVKGVCSNF-------- 188 (367)
T ss_pred ----------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCC--CccCCeehHhh--------
Confidence 0124689999999853 367899999999998754 55788999999
Q ss_pred HHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCC
Q psy15286 320 LEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQP 399 (707)
Q Consensus 320 ~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (707)
|..|++|+.+.+.. ++|
T Consensus 189 -----------------L~~Lk~Gd~V~v~G--------------------------P~G-------------------- 205 (367)
T PLN03115 189 -----------------LCDLKPGAEVKITG--------------------------PVG-------------------- 205 (367)
T ss_pred -----------------HhhCCCcCEEEEEe--------------------------ecC--------------------
Confidence 88899998876653 111
Q ss_pred CCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhh
Q psy15286 400 VAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPME 479 (707)
Q Consensus 400 ~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~ 479 (707)
..|.+|.+.+.|+|| ||.|| ||||||
T Consensus 206 --------------~~fllp~~~~~~iIm--------------IAgGT-----------------------GIAP~r--- 231 (367)
T PLN03115 206 --------------KEMLMPKDPNATIIM--------------LATGT-----------------------GIAPFR--- 231 (367)
T ss_pred --------------CceeCCcCCCCCEEE--------------EeCCe-----------------------eHHHHH---
Confidence 014567677789999 99999 999999
Q ss_pred hhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhccc
Q psy15286 480 LQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGL 559 (707)
Q Consensus 480 ~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (707)
+|++ ++. ... ....
T Consensus 232 --------------s~L~--~~~---~~~-----------------------------------------------~~~~ 245 (367)
T PLN03115 232 --------------SFLW--KMF---FEK-----------------------------------------------HDDY 245 (367)
T ss_pred --------------HHHH--HHH---hhc-----------------------------------------------cccc
Confidence 9998 433 100 0001
Q ss_pred ccCCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEE
Q psy15286 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYV 634 (707)
Q Consensus 560 ~~~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYV 634 (707)
...++++||||||+.+ | +|.+||++|++. +..++++++|||++. +.++||||+|.++.+++++++...+++|||
T Consensus 246 ~~~~~v~Lf~G~R~~~-dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYi 324 (367)
T PLN03115 246 KFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYM 324 (367)
T ss_pred cCCCcEEEEEccCCHH-HhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEE
Confidence 1247899999999985 7 999999999887 323489999999864 257899999999998898877556789999
Q ss_pred eCChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 635 CGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
|||++|+++|.++|.+++...+ + +++++++.|+++||||.|||
T Consensus 325 CGp~~M~~~V~~~l~~l~~~~g-~---~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 325 CGLKGMEKGIDDIMVSLAAKDG-I---DWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred eCCHHHHHHHHHHHHHHHHHhC-c---cHHHHHHHHHHCCCeEEecC
Confidence 9999999999999999998874 4 58999999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.97 E-value=3.7e-30 Score=270.53 Aligned_cols=218 Identities=37% Similarity=0.561 Sum_probs=179.0
Q ss_pred CCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeE
Q psy15286 269 PRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFY 348 (707)
Q Consensus 269 PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~ 348 (707)
+|.|||+|+|...++.++|+|+.+.+...+ +..+.|.||+| |..+++|+.+.+
T Consensus 48 ~R~ySias~p~~~~~~l~l~Ik~~~~~~~~--~~~~~G~~S~~-------------------------L~~lk~Gd~v~v 100 (267)
T cd06182 48 PRYYSIASSPDVDPGEVHLCVRVVSYEAPA--GRIRKGVCSNF-------------------------LAGLQLGAKVTV 100 (267)
T ss_pred CeeEeecCCCCCCCCEEEEEEEEEEEecCC--CCeeccchhHH-------------------------HhhCCCCCEEEE
Confidence 478999999976678999999999887665 45688999999 888888887665
Q ss_pred EecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCCcEEEeeccCCCCCCCCCCCCCCcee
Q psy15286 349 SISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQKDSSRESDGSQPVAR 428 (707)
Q Consensus 349 sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~f~lp~~~~~Piim 428 (707)
.. +.. ..|.++.+...|+||
T Consensus 101 ~~-----------------------p~G-------------------------------------~~f~l~~~~~~~~vl 120 (267)
T cd06182 101 FI-----------------------RPA-------------------------------------PSFRLPKDPTTPIIM 120 (267)
T ss_pred EE-----------------------ecC-------------------------------------CcccCCCCCCCCEEE
Confidence 54 000 026677666789999
Q ss_pred eecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhhhccccCCcccccccccccCCChhhHh
Q psy15286 429 TTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLR 508 (707)
Q Consensus 429 ~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~~~~~~~~~~~~~f~q~~~R~~~~~~~ 508 (707)
|+.|| |||||+ ++++ ++. ..
T Consensus 121 --------------IAgGt-----------------------GIaP~~-----------------s~l~--~~~---~~- 140 (267)
T cd06182 121 --------------VGPGT-----------------------GIAPFR-----------------GFLQ--ERA---AL- 140 (267)
T ss_pred --------------EecCc-----------------------cHHHHH-----------------HHHH--HHH---Hh-
Confidence 99999 999999 8888 433 10
Q ss_pred hhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccCCceEEEEecCCCCCc-ccHHHHHHHH
Q psy15286 509 TLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQELGKMTLFFGCQLKTMD-LYSDEKSKML 587 (707)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~LffG~R~~~~D-ly~dELe~~~ 587 (707)
..+....++++||||+|+.+.| +|.+||++|.
T Consensus 141 -----------------------------------------------~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~ 173 (267)
T cd06182 141 -----------------------------------------------RANGKARGPAWLFFGCRNFASDYLYREELQEAL 173 (267)
T ss_pred -----------------------------------------------hhccccCCCEEEEEeCCCCcccccHHHHHHHHH
Confidence 0012345789999999999557 9999999999
Q ss_pred hcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChh-hHHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy15286 588 DQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKL 666 (707)
Q Consensus 588 ~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~-M~~~V~~~L~~il~~~~~~~~~~a~~~ 666 (707)
+.+..+++++++||++...++||++.+.+..+.+++.+ .+++.||||||+. |+++|.++|.+++++.++++.++|+++
T Consensus 174 ~~~~~~~~~~~~S~~~~~~~~~v~~~l~~~~~~l~~~l-~~~~~vyvCGp~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~ 252 (267)
T cd06182 174 KDGALTRLDVAFSREQAEPKVYVQDKLKEHAEELRRLL-NEGAHIYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEY 252 (267)
T ss_pred hCCCcceEEEEEccCCCCCceehHHHHHHhHHHHHHHH-hcCCEEEEECCcccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 88655589999999865347899999988777777766 4567999999998 999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEe
Q psy15286 667 LLRLRDENRYHEDIF 681 (707)
Q Consensus 667 l~~L~~~gRy~~Dvw 681 (707)
+++|++.|||++|+|
T Consensus 253 ~~~~~~~~~~~~~~~ 267 (267)
T cd06182 253 LKELEDEGRYVEDVW 267 (267)
T ss_pred HHHHHHcCCeEEecC
Confidence 999999999999999
No 16
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.96 E-value=2.6e-28 Score=258.96 Aligned_cols=216 Identities=25% Similarity=0.310 Sum_probs=168.4
Q ss_pred CCCcccccCCCCCC---CCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCCCCCChHHHHhccCCCC
Q psy15286 268 QPRFYSISSSPLAH---PNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQ 344 (707)
Q Consensus 268 ~PR~YSIsSSp~~~---p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~ 344 (707)
.+|.|||||+|... ++.++|+|..+.+.++.+ ...+.|++|+| |..+++|+
T Consensus 63 ~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~-~~~~~G~~S~~-------------------------L~~l~~Gd 116 (286)
T cd06208 63 KLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPET-DETKKGVCSNY-------------------------LCDLKPGD 116 (286)
T ss_pred CceeeEecCCccccCCCCCEEEEEEEEEEEecCCC-CceeccchHHH-------------------------HhhCCCCC
Confidence 35899999998643 578999999998876542 35678999999 88888898
Q ss_pred ceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCCCCCCcEEEeeccCCCCCCCCCCCCC
Q psy15286 345 PRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQKDSSRESDGSQ 424 (707)
Q Consensus 345 ~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~f~lp~~~~~ 424 (707)
.+.++- ....| |..|.+...
T Consensus 117 ~v~v~g-----------------------P~G~~-------------------------------------~~~~~~~~~ 136 (286)
T cd06208 117 DVQITG-----------------------PVGKT-------------------------------------MLLPEDPNA 136 (286)
T ss_pred EEEEEe-----------------------ecCCc-------------------------------------ccCCCCCCC
Confidence 776543 11111 344545567
Q ss_pred CceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhhhhhhccccCCcccccccccccCCCh
Q psy15286 425 PVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPR 504 (707)
Q Consensus 425 Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~~~~~~~~~~~~~~~~f~q~~~R~~~ 504 (707)
|+|| ||.|| |||||+ ++++ ++.
T Consensus 137 ~~vl--------------IagGt-----------------------GIaP~~-----------------s~l~--~~~-- 158 (286)
T cd06208 137 TLIM--------------IATGT-----------------------GIAPFR-----------------SFLR--RLF-- 158 (286)
T ss_pred CEEE--------------EecCc-----------------------cHHHHH-----------------HHHH--HHH--
Confidence 9999 99999 999999 9988 433
Q ss_pred hhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhcccccCCceEEEEecCCCCCc-ccHHHH
Q psy15286 505 ASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGLQELGKMTLFFGCQLKTMD-LYSDEK 583 (707)
Q Consensus 505 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~LffG~R~~~~D-ly~dEL 583 (707)
.. . .......++++||||+|+++ | +|.+||
T Consensus 159 -~~----------------------------------------~-------~~~~~~~~~v~L~~g~r~~~-d~~~~~el 189 (286)
T cd06208 159 -RE----------------------------------------K-------HADYKFTGLAWLFFGVPNSD-SLLYDDEL 189 (286)
T ss_pred -Hh----------------------------------------h-------hcccCCCCCEEEEEEecCcc-chhHHHHH
Confidence 10 0 00123457899999999996 6 999999
Q ss_pred HHHHhc-CCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhhHHHHHHHHHHHHHHhCCCC
Q psy15286 584 SKMLDQ-KVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLT 659 (707)
Q Consensus 584 e~~~~~-g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M~~~V~~~L~~il~~~~~~~ 659 (707)
+++.++ +...++++++||++. +.++||++.+.+..+.+++.+...++.||+|||++|+++|.+.|.+++. +
T Consensus 190 ~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~~m~~~v~~~L~~~~~-----~ 264 (286)
T cd06208 190 EKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLKGMEPGVDDALTSVAE-----G 264 (286)
T ss_pred HHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCchHHHHHHHHHHHHHh-----c
Confidence 999986 333489999999764 2578999999987777777664455699999999999999999999987 2
Q ss_pred HHHHHHHHHHHHhCCcEEEEEe
Q psy15286 660 EQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 660 ~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
..+|++++..|+++|||+.|||
T Consensus 265 ~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 265 GLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred cHHHHHHHHHHHHcCCeEEecC
Confidence 3579999999999999999999
No 17
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.96 E-value=3.9e-28 Score=269.54 Aligned_cols=270 Identities=22% Similarity=0.279 Sum_probs=209.3
Q ss_pred cCCCCcEEEEEeEEeeccCCCCCCCcEEEEEeeCCC-CCCCCCCCeeEEcccCCHHHHHHHHHHhcCCCCCCCCceEecc
Q psy15286 84 VHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKPH-DCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQV 162 (707)
Q Consensus 84 ~~~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~-~l~Y~pGD~l~I~P~N~~~~V~~lL~~L~L~~~d~d~~i~l~~ 162 (707)
+..++++.|+|+.|++|++ .+...++++|.|+.+. ...|+||..+.|.++..
T Consensus 137 ~~~~~~~~a~V~~~~~l~~-~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~-------------------------- 189 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTD-EDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGT-------------------------- 189 (411)
T ss_pred ccCCCCeEEEEeeeEEccC-CCCCCceEEEEEeCCCCcCCccCCcEEEEecCCc--------------------------
Confidence 3467889999999999998 7777899999999854 58899999998864310
Q ss_pred cccccccccccccCCCCCCCCcccHHHHHHHhhccCCCCCHHHHHHHHhhcCCHHHHHHHHHhhhchHHHHHHhhcCCCC
Q psy15286 163 LSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPH 242 (707)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~Pp~tl~~ll~~~lDl~~~p~~~~l~~La~~a~d~~ek~~L~~L~s~~~~y~~~~~~~~~s 242 (707)
+..+
T Consensus 190 ---------------------------------~~~g------------------------------------------- 193 (411)
T TIGR03224 190 ---------------------------------DASG------------------------------------------- 193 (411)
T ss_pred ---------------------------------CcCC-------------------------------------------
Confidence 0000
Q ss_pred HHHHHhhCCCCCCChHHHHHHhCCCCCCcccccCCCCC---CCCeEEEEEEEEEeeccCCCCCccccccccccccccccH
Q psy15286 243 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLA---HPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHL 319 (707)
Q Consensus 243 lldvL~~f~s~~~pl~~Ll~~lp~l~PR~YSIsSSp~~---~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~ 319 (707)
.++..|.|||+|+|.. ..+.++|+|.++.+.. ++..+.|.||+|
T Consensus 194 ----------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~~~---~g~~~~G~~S~~-------- 240 (411)
T TIGR03224 194 ----------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTTDH---QGNAVRGVASNY-------- 240 (411)
T ss_pred ----------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEecC---CCCcCcccchhH--------
Confidence 0123578999998732 1257999999887532 366788999999
Q ss_pred HHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccccccccccCCCC
Q psy15286 320 LEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQP 399 (707)
Q Consensus 320 ~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (707)
|..+++|+.+.+.- ++|
T Consensus 241 -----------------L~~lk~Gd~v~v~G--------------------------P~G-------------------- 257 (411)
T TIGR03224 241 -----------------LCDLKKGDKVQVIG--------------------------PFG-------------------- 257 (411)
T ss_pred -----------------HhcCCCcCEEEEEe--------------------------ccC--------------------
Confidence 88899998876543 111
Q ss_pred CCCCcEEEeeccCCCCCCCCCCCCCCceeeecccccCCCCCcccCCCCcccccccCchhhhhhhhhhccCCCCCCCchhh
Q psy15286 400 VAFAPVTVQFRSDQKDSSRESDGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPME 479 (707)
Q Consensus 400 ~~~~~~~~~~r~~~~~f~lp~~~~~Piim~~~~~~~~~~~~~~i~~Gt~~~~~~~~~~~~~~~~~~~~~~~GiAPfr~~~ 479 (707)
+.|.+|.+...|+|| ||.|| |||||+
T Consensus 258 --------------~~f~lp~~~~~~lll--------------IagGt-----------------------GIAP~~--- 283 (411)
T TIGR03224 258 --------------STFLMPNHPESSIMM--------------ICTGT-----------------------GSAPMR--- 283 (411)
T ss_pred --------------CcccCCCCCCCCEEE--------------Eeccc-----------------------CcHHHH---
Confidence 115677666689999 99999 999999
Q ss_pred hhhhccccCCcccccccccccCCChhhHhhhhhhccccCCCCChhhhhhhhcccCCcchHHHHHHHHHhhhhhhhhhccc
Q psy15286 480 LQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATKMQNSRVIKFGL 559 (707)
Q Consensus 480 ~~~~~~~~~~~~~~~f~q~~~R~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (707)
++++ ++. .. . ..
T Consensus 284 --------------s~l~--~~~---~~------------------------------------------------~-~~ 295 (411)
T TIGR03224 284 --------------AMTE--RRR---RR------------------------------------------------R-DH 295 (411)
T ss_pred --------------HHHH--HHH---HH------------------------------------------------h-hc
Confidence 9988 433 10 0 01
Q ss_pred ccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCCh
Q psy15286 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDC 638 (707)
Q Consensus 560 ~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~ 638 (707)
+..++++||||+|+++ | +|.+||++|.+.. + +++++|||++++.++||||.|+++.+.+++++.+.+++||+|||+
T Consensus 296 ~~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~~-~-~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~ 372 (411)
T TIGR03224 296 GEGGKLMLFFGARTKE-ELPYFGPLQKLPKDF-I-DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK 372 (411)
T ss_pred CCCCCEEEEEecCccc-cchHHHHHHHHHhcC-c-eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH
Confidence 2457999999999996 6 9999999998653 3 678899997655689999999988888887775556899999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 639 TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 639 ~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
+|+++|.++|.++..+. ++. +++++.+|+++||||.|+|
T Consensus 373 ~M~~~v~~~L~~~~~~~-~~~---~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 373 GMEEGVLDAFRDVCATN-GLS---WETLEPRLRAEGRLHLETY 411 (411)
T ss_pred HHHHHHHHHHHHHHHHc-CcC---HHHHHHHHHHCCCeEEecC
Confidence 99999999999998765 443 6789999999999999998
No 18
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.96 E-value=1.3e-27 Score=253.97 Aligned_cols=108 Identities=34% Similarity=0.554 Sum_probs=93.4
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhhH
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMA 641 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M~ 641 (707)
++++||||+|++++| +|.+||++|.+++.+++++.++||++ .++|||+.+..+.+.+..++ ..++.||||||++|+
T Consensus 181 ~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~--~~g~v~~~l~~~~~~l~~~~-~~~~~vyiCGp~~M~ 257 (289)
T cd06201 181 RPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP--DGAYVQDRLRADAERLRRLI-EDGAQIMVCGSRAMA 257 (289)
T ss_pred CCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC--CcccchhHHHHhHHHHHHHH-HCCcEEEEECCHHHH
Confidence 579999999998667 99999999998876668899999975 47899999988776666655 467899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 642 EHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 642 ~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
++|.+.|.+|+.+++ + -+.+|+++|||.+|||
T Consensus 258 ~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 258 QGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred HHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 999999999998763 3 2889999999999998
No 19
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.95 E-value=5e-27 Score=243.76 Aligned_cols=107 Identities=30% Similarity=0.426 Sum_probs=93.7
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCCh-hh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDC-TM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~-~M 640 (707)
++++||||||+.+.| +|.+||++|.+.+..+++++++||++. .++||++.+.++.+.+++++ ..+++||+|||+ +|
T Consensus 137 ~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s~~~~-~~~~v~~~l~~~~~~~~~~~-~~~~~vy~CGp~~~m 214 (245)
T cd06200 137 HRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDLAFSRDQA-QKRYVQDRLRAAADELRAWV-AEGAAIYVCGSLQGM 214 (245)
T ss_pred CCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEEEEccCCC-CCcchHHHHHHhHHHHHHHH-HCCcEEEEECCchhh
Confidence 578999999998657 899999999988777789999999864 58999999998877776655 457899999999 99
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 641 AEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 641 ~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
+++|.+.|.++++++ ++.+|+++|||++|||
T Consensus 215 ~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d~~ 245 (245)
T cd06200 215 APGVDAVLDEILGEE----------AVEALLAAGRYRRDVY 245 (245)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHCCCeEEecC
Confidence 999999999998753 4889999999999999
No 20
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.94 E-value=1.9e-26 Score=247.06 Aligned_cols=114 Identities=30% Similarity=0.433 Sum_probs=95.6
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCC-CceEEEEEecCCCC---CccchhhHHHhhHHHHHHHhhcCCcEEEEeC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKV-LTKSFLALSREPTI---PKTYVQDLMKKEASMLYRELIKEGGHFYVCG 636 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~-l~~l~~AfSRe~~~---~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCG 636 (707)
.++++||||+|+.+ | +|.+||++|++... .++++.++||++.. .++||++.|.+..+.++..+ ..++.+||||
T Consensus 189 ~~~v~L~~g~R~~~-d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~-~~~~~vYiCG 266 (307)
T PLN03116 189 GGLAWLFLGVANSD-SLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLL-DNGAHIYFCG 266 (307)
T ss_pred CCcEEEEEecCCcc-cchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHhhh-cCCcEEEEeC
Confidence 47899999999985 7 99999999988742 33899999997642 46899999988766665544 4578999999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 637 DCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 637 p~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
|++|++++.++|.+++.+. |+ +|++++..|+++|||++|||
T Consensus 267 p~~mv~~v~~~L~~~~~~~-g~---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 267 LKGMMPGIQDTLKRVAEER-GE---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred CHHHHHHHHHHHHHHHHHc-Cc---cHHHHHHHHHHcCceEEecC
Confidence 9999999999999988765 55 47789999999999999999
No 21
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.71 E-value=2.1e-17 Score=171.98 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-C-CCceEEEEEecCCCC--CccchhhHHHhh-HHHHHH-HhhcCCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-K-VLTKSFLALSREPTI--PKTYVQDLMKKE-ASMLYR-ELIKEGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g-~l~~l~~AfSRe~~~--~k~YVQd~L~~~-~~~l~~-~L~~~ga~iYV 634 (707)
.+++.||||+|+.+ | +|.+||+++++. + .+ ++++++||++.. .+++|++.+.+. ...... .+...+..+|+
T Consensus 134 ~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~-~v~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~ 211 (248)
T PRK10926 134 FKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKL-RIQTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVML 211 (248)
T ss_pred CCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCE-EEEEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEE
Confidence 46899999999985 7 999999999876 2 46 799999986532 357888766432 111111 11124678999
Q ss_pred eCChhhHHHHHHHHHHH
Q psy15286 635 CGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~i 651 (707)
|||++|++++.+.|.+.
T Consensus 212 CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 212 CGNPQMVRDTQQLLKET 228 (248)
T ss_pred ECCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 22
>PRK08051 fre FMN reductase; Validated
Probab=99.69 E-value=6.6e-17 Score=166.44 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=63.5
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
..+++||||+|+.+ | +|.+||+++++....++++.++|++++ +.++||++.+.+.. ....+.++|+|||
T Consensus 130 ~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~------~~~~~~~vyicGp 202 (232)
T PRK08051 130 NRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDF------GSLAEYDIYIAGR 202 (232)
T ss_pred CCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhhc------cCcccCEEEEECC
Confidence 46899999999996 7 999999999987433489999998654 24678877654321 1124568999999
Q ss_pred hhhHHHHHHHH-HHH
Q psy15286 638 CTMAEHVYQTL-KYV 651 (707)
Q Consensus 638 ~~M~~~V~~~L-~~i 651 (707)
++|+++|.+.| .+.
T Consensus 203 ~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 203 FEMAKIARELFCRER 217 (232)
T ss_pred HHHHHHHHHHHHHHc
Confidence 99999999888 564
No 23
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.69 E-value=5.2e-17 Score=180.03 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=71.9
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcC-CCceEEEEEecCCCCC---ccchh-hHHHhhHHHHHHHhhcCCcEEEEe
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQK-VLTKSFLALSREPTIP---KTYVQ-DLMKKEASMLYRELIKEGGHFYVC 635 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g-~l~~l~~AfSRe~~~~---k~YVQ-d~L~~~~~~l~~~L~~~ga~iYVC 635 (707)
.++++||||+|+.+ | +|.+||+++.+.. .+ ++++++|++.... ..|++ .++. .+.+.+.+...+.++|||
T Consensus 289 ~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~g~i~--~~~l~~~~~~~~~~vyiC 364 (399)
T PRK13289 289 KRPVHFIHAARNGG-VHAFRDEVEALAARHPNL-KAHTWYREPTEQDRAGEDFDSEGLMD--LEWLEAWLPDPDADFYFC 364 (399)
T ss_pred CCCEEEEEEeCChh-hchHHHHHHHHHHhCCCc-EEEEEECCCccccccCCcccccCccc--HHHHHhhCCCCCCEEEEE
Confidence 46899999999996 6 9999999998875 55 7999999864211 11221 2222 122333343347899999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEeccc
Q psy15286 636 GDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGIT 684 (707)
Q Consensus 636 Gp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~~ 684 (707)
||++|++++.+.|.+. |++ ..+++.|.|+..
T Consensus 365 Gp~~m~~~v~~~L~~~-----Gv~-------------~~~I~~E~F~~~ 395 (399)
T PRK13289 365 GPVPFMQFVAKQLLEL-----GVP-------------EERIHYEFFGPA 395 (399)
T ss_pred CCHHHHHHHHHHHHHc-----CCC-------------HHHeeeeccCCc
Confidence 9999999999988764 664 458999999853
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.69 E-value=1.3e-16 Score=169.13 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCC--C---CCccchhhHHHhhHHHHHHHhhcCCcEEEEe
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREP--T---IPKTYVQDLMKKEASMLYRELIKEGGHFYVC 635 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~--~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVC 635 (707)
..+++||||+|+.+ | +|.+||+++.++...+++++++|++. + +.++||++.+.+.. +.......+..+|+|
T Consensus 179 ~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~~~~~~--~~~~~~~~~~~vyiC 255 (283)
T cd06188 179 KRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQVLLENY--LKKHPAPEDIEFYLC 255 (283)
T ss_pred CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHHHHHHH--hccCCCCCCeEEEEE
Confidence 36899999999985 7 99999999987744447889999864 1 24688987765432 111111235689999
Q ss_pred CChhhHHHHHHHHHHH
Q psy15286 636 GDCTMAEHVYQTLKYV 651 (707)
Q Consensus 636 Gp~~M~~~V~~~L~~i 651 (707)
||++|++++.+.|.+.
T Consensus 256 GP~~m~~~~~~~l~~~ 271 (283)
T cd06188 256 GPPPMNSAVIKMLDDL 271 (283)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999775
No 25
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.68 E-value=1.4e-16 Score=177.41 Aligned_cols=100 Identities=19% Similarity=0.335 Sum_probs=74.0
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhcCCcEEEEe
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIKEGGHFYVC 635 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVC 635 (707)
.++++||||+|+++ | +|.+||+++.++...+++++++||++. +.++||++.+.+.. +.+.....+.++|+|
T Consensus 303 ~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~~~~~vyiC 379 (409)
T PRK05464 303 KRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLYENY--LKDHEAPEDCEYYMC 379 (409)
T ss_pred CceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHHHhh--hhhcCCCCCeEEEEE
Confidence 36899999999996 6 999999999877433479999997532 24678888775432 111111246799999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy15286 636 GDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFG 682 (707)
Q Consensus 636 Gp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~ 682 (707)
||++|++++.+.|.+. |++ ..|++.|.|+
T Consensus 380 GP~~m~~av~~~L~~~-----Gv~-------------~~~I~~E~F~ 408 (409)
T PRK05464 380 GPPMMNAAVIKMLKDL-----GVE-------------DENILLDDFG 408 (409)
T ss_pred CCHHHHHHHHHHHHHc-----CCC-------------HHHEEEcccC
Confidence 9999999999988664 553 4688888886
No 26
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.68 E-value=1.5e-16 Score=177.02 Aligned_cols=100 Identities=18% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhcCCcEEEEe
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIKEGGHFYVC 635 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVC 635 (707)
..+++||||+|+++ | +|.+||+++.++...+++++++|+++. +.++||++.+.+.. +.+.....++.+|+|
T Consensus 299 ~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~~~~~vylC 375 (405)
T TIGR01941 299 KRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVLYENY--LKDHDAPEDCEFYMC 375 (405)
T ss_pred CCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHHHHhh--hcccCCCCCeEEEEe
Confidence 46899999999985 6 999999999877443478999997532 24578887775421 211111246789999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy15286 636 GDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFG 682 (707)
Q Consensus 636 Gp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~ 682 (707)
||++|++++.+.|.+. |++ ..|++.|.|+
T Consensus 376 GP~~m~~av~~~L~~~-----Gv~-------------~~~I~~E~F~ 404 (405)
T TIGR01941 376 GPPMMNAAVIKMLEDL-----GVE-------------RENILLDDFG 404 (405)
T ss_pred CCHHHHHHHHHHHHHc-----CCC-------------HHHEEEeccC
Confidence 9999999999998765 563 5588888886
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.67 E-value=2.9e-16 Score=158.96 Aligned_cols=89 Identities=28% Similarity=0.390 Sum_probs=62.5
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChh
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCT 639 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~ 639 (707)
..++++||||+|+.+ | +|.+||+++.+.+...+++++++|++...+. .++.+..............+..+|+|||++
T Consensus 124 ~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~ 201 (223)
T cd00322 124 PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVLALSRESEAKLG-PGGRIDREAEILALLPDDSGALVYICGPPA 201 (223)
T ss_pred CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEecCCCCCCCc-ccceeeHHHHHHhhcccccCCEEEEECCHH
Confidence 347899999999996 7 9999999999875444899999997653232 222221111111111223577999999999
Q ss_pred hHHHHHHHHHHH
Q psy15286 640 MAEHVYQTLKYV 651 (707)
Q Consensus 640 M~~~V~~~L~~i 651 (707)
|++++++.|.+.
T Consensus 202 m~~~~~~~L~~~ 213 (223)
T cd00322 202 MAKAVREALVSL 213 (223)
T ss_pred HHHHHHHHHHHc
Confidence 999999998765
No 28
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.67 E-value=2.2e-16 Score=171.46 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhcCCcEEEEe
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIKEGGHFYVC 635 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVC 635 (707)
.++++||||+|+++ | +|.++|++|.++...++++.++||+.. +.++||++.+.+.. ....+..+|+|
T Consensus 232 ~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~------~~~~~~~vy~C 304 (339)
T PRK07609 232 QRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDF------PDLSGHQVYAC 304 (339)
T ss_pred CCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhc------ccccCCEEEEE
Confidence 46899999999985 7 778888999876433489999998521 24678887665421 11245799999
Q ss_pred CChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEeccc
Q psy15286 636 GDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGIT 684 (707)
Q Consensus 636 Gp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~~ 684 (707)
||++|++++.+.|.+. |++ ..+++.|.|+..
T Consensus 305 Gp~~m~~~~~~~l~~~-----G~~-------------~~~i~~e~F~~~ 335 (339)
T PRK07609 305 GSPVMVYAARDDFVAA-----GLP-------------AEEFFADAFTYA 335 (339)
T ss_pred CCHHHHHHHHHHHHHc-----CCC-------------HHHeEEeecccC
Confidence 9999999999988764 553 568999999864
No 29
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.66 E-value=3.1e-16 Score=160.47 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=64.9
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC--CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT--IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~--~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
..++++||||+|+.+ | +|.+||++|.++...+++++++||+.. +.++||++.+.+. .+...+..+|+|||
T Consensus 129 ~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp 201 (228)
T cd06209 129 SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTVVADPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGP 201 (228)
T ss_pred CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEEEcCCCccCCCcCCccHHHHHh------hccCCCcEEEEeCC
Confidence 346899999999985 6 999999999877433478999998653 2467898776542 12234578999999
Q ss_pred hhhHHHHHHHHHHH
Q psy15286 638 CTMAEHVYQTLKYV 651 (707)
Q Consensus 638 ~~M~~~V~~~L~~i 651 (707)
++|++++++.|.+.
T Consensus 202 ~~m~~~~~~~l~~~ 215 (228)
T cd06209 202 PPMVDAVRSWLDEQ 215 (228)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 30
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.66 E-value=4.5e-16 Score=169.37 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
.++++||||+|+++ | +|.+||++|.++...++++.++|++++ +.++||++++.+. .+......+|+|||
T Consensus 237 ~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp 309 (340)
T PRK11872 237 SPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGP 309 (340)
T ss_pred CCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCC
Confidence 36899999999995 7 999999999877333489999997643 2468888777542 12224568999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEecc
Q psy15286 638 CTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGI 683 (707)
Q Consensus 638 ~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~ 683 (707)
++|++++.+.|.+. |++ +.+++.|.|+.
T Consensus 310 ~~mv~~~~~~L~~~-----Gv~-------------~~~i~~E~F~~ 337 (340)
T PRK11872 310 PPMVEAVKQWLDEQ-----ALE-------------NYRLYYEKFTQ 337 (340)
T ss_pred HHHHHHHHHHHHHc-----CCC-------------HHHEEEeeecC
Confidence 99999999998765 563 56899999984
No 31
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.65 E-value=4.1e-16 Score=159.92 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=64.6
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-------CCccchhhHHHhhHHHHHHHhhcCCcEE
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-------IPKTYVQDLMKKEASMLYRELIKEGGHF 632 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-------~~k~YVQd~L~~~~~~l~~~L~~~ga~i 632 (707)
...+++|+||+|+.+ | +|.+||+++.+.+..+++++++|+++. +.++|+++.+.+.... ..++..|
T Consensus 126 ~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~~v 199 (232)
T cd06190 126 SDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD-----RLAEFEF 199 (232)
T ss_pred CCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccC-----CccccEE
Confidence 347899999999985 7 999999999987554578899987642 1356787766542110 0246799
Q ss_pred EEeCChhhHHHHHHHHHHH
Q psy15286 633 YVCGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 633 YVCGp~~M~~~V~~~L~~i 651 (707)
|+|||++|++++.+.|.+.
T Consensus 200 yiCGp~~m~~~v~~~l~~~ 218 (232)
T cd06190 200 YFAGPPPMVDAVQRMLMIE 218 (232)
T ss_pred EEECCHHHHHHHHHHHHHh
Confidence 9999999999999988775
No 32
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.65 E-value=4.4e-16 Score=159.09 Aligned_cols=83 Identities=12% Similarity=0.104 Sum_probs=64.1
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
..+++|+||+|+.+ + +|.+||+++.++...++++.++|++++ +.++||++.+.+.. ....+.++|+|||
T Consensus 126 ~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~------~~~~~~~v~vCGp 198 (224)
T cd06189 126 KRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDF------PDLSDFDVYACGS 198 (224)
T ss_pred CCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhhc------cCccccEEEEECC
Confidence 46899999999995 6 999999999886443478889998643 24678887664321 1124678999999
Q ss_pred hhhHHHHHHHHHHH
Q psy15286 638 CTMAEHVYQTLKYV 651 (707)
Q Consensus 638 ~~M~~~V~~~L~~i 651 (707)
++|++++.+.|.+.
T Consensus 199 ~~m~~~~~~~l~~~ 212 (224)
T cd06189 199 PEMVYAARDDFVEK 212 (224)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999764
No 33
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.65 E-value=5.5e-16 Score=168.08 Aligned_cols=98 Identities=16% Similarity=0.354 Sum_probs=70.6
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhc-CCcEEEEeCCh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIK-EGGHFYVCGDC 638 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~-~ga~iYVCGp~ 638 (707)
..+++||||+|+.+ | +|.+||+++.++ +.+ ++++..+++. .++|+++++.+. .+.+.+.+ .+..+|+|||+
T Consensus 139 ~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~-~~~~~~~~~~--~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~ 212 (332)
T PRK10684 139 QADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQL-NLTLVAENNA--TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA 212 (332)
T ss_pred CCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCe-EEEEEeccCC--CCCccccccCHH--HHHHhcccccCCEEEEECCH
Confidence 36899999999996 7 999999999887 444 6777776643 355666666432 22222211 36789999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEecc
Q psy15286 639 TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGI 683 (707)
Q Consensus 639 ~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~ 683 (707)
+|++++.+.|.+. |++ ..|++.|.|+.
T Consensus 213 ~m~~~v~~~l~~~-----Gv~-------------~~~i~~E~F~~ 239 (332)
T PRK10684 213 PYMDWVEQEVKAL-----GVT-------------ADRFFKEKFFT 239 (332)
T ss_pred HHHHHHHHHHHHc-----CCC-------------HHHeEeeccCC
Confidence 9999999988664 553 45888888874
No 34
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.64 E-value=4.6e-16 Score=160.49 Aligned_cols=83 Identities=33% Similarity=0.414 Sum_probs=63.1
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhcCCcEEEEeC
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIKEGGHFYVCG 636 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCG 636 (707)
+++.||||+|+.+ + +|.+||+++.+....++++.++||+.+ +.++||++.+.+... . ..++..+|+||
T Consensus 138 ~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~~vyvCG 211 (238)
T cd06211 138 RKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKHFK---N--DFRGHKAYLCG 211 (238)
T ss_pred CcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHHHHHHhcc---c--ccccCEEEEEC
Confidence 6899999999995 6 999999999877433378899998642 135788876553210 0 12467999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy15286 637 DCTMAEHVYQTLKYV 651 (707)
Q Consensus 637 p~~M~~~V~~~L~~i 651 (707)
|++|++++.+.|.+.
T Consensus 212 p~~m~~~~~~~L~~~ 226 (238)
T cd06211 212 PPPMIDACIKTLMQG 226 (238)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999765
No 35
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.64 E-value=4.5e-16 Score=160.73 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCCC--CccchhhHHHhhHHHHHHHh----hcCCcEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPTI--PKTYVQDLMKKEASMLYREL----IKEGGHFY 633 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~~--~k~YVQd~L~~~~~~l~~~L----~~~ga~iY 633 (707)
.++++||||+|+.+ | +|.+||+++.++ ...+++++++||++.. .++|+++.+... .+.+.+ ...+..+|
T Consensus 129 ~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~g~v~~~l~~~--~l~~~~~~~~~~~~~~vy 205 (241)
T cd06195 129 FDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFRYVPIVSREKENGALTGRIPDLIESG--ELEEHAGLPLDPETSHVM 205 (241)
T ss_pred CCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEEEEEEECcCCccCCCceEhHHhhhhc--hhhHhhCCCCCcccCEEE
Confidence 46899999999995 7 999999999876 3333788899987642 368898876531 121211 12467899
Q ss_pred EeCChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy15286 634 VCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681 (707)
Q Consensus 634 VCGp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw 681 (707)
||||++|++++.+.|.+. |++.+.- .+.+++|.|-|
T Consensus 206 iCGp~~m~~~~~~~l~~~-----G~~~~~~-------~~~~~~~~E~~ 241 (241)
T cd06195 206 LCGNPQMIDDTQELLKEK-----GFSKNHR-------RKPGNITVEKY 241 (241)
T ss_pred EeCCHHHHHHHHHHHHHc-----CCCcccc-------CCCceEEEecC
Confidence 999999999999998775 4431110 45688888866
No 36
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.63 E-value=9.8e-16 Score=157.25 Aligned_cols=95 Identities=19% Similarity=0.328 Sum_probs=69.6
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhc-CCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIK-EGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~-~ga~iYV 634 (707)
.++++||||+|+.+ + +|.+||+.+.+....++++.++||+.. +..+|+++.+.+. +.+ ++..+|+
T Consensus 131 ~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~~v~~ 202 (232)
T cd06212 131 DRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRN-------EATLAGCDVYL 202 (232)
T ss_pred CCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhh-------ccCccCCEEEE
Confidence 46799999999985 6 999999999876333378889998642 1356777655432 111 4678999
Q ss_pred eCChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy15286 635 CGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFG 682 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~ 682 (707)
|||++|++++.+.|.+. |++ ..+++.|.|+
T Consensus 203 CGp~~~~~~v~~~l~~~-----G~~-------------~~~i~~e~f~ 232 (232)
T cd06212 203 CGPPPMIDAALPVLEMS-----GVP-------------PDQIFYDKFT 232 (232)
T ss_pred ECCHHHHHHHHHHHHHc-----CCC-------------HHHeeecccC
Confidence 99999999999988764 553 4467777663
No 37
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.63 E-value=1.1e-15 Score=157.04 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=62.6
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
.++++||||+|+.+ | +|.+||+++.+.....++++++||+.. +.++++++.+.+.. .. . .....+|+|||
T Consensus 136 ~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l---~~-~-~~~~~vyicGp 209 (236)
T cd06210 136 PQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDL---AS-S-DAKPDIYLCGP 209 (236)
T ss_pred CceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhh---cc-c-CCCcEEEEeCC
Confidence 36799999999985 7 999999999987433479999998643 24567776554321 01 1 23568999999
Q ss_pred hhhHHHHHHHHHHH
Q psy15286 638 CTMAEHVYQTLKYV 651 (707)
Q Consensus 638 ~~M~~~V~~~L~~i 651 (707)
++|++++++.|.+.
T Consensus 210 ~~m~~~~~~~l~~~ 223 (236)
T cd06210 210 PGMVDAAFAAAREA 223 (236)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988764
No 38
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.63 E-value=1.1e-15 Score=158.19 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=70.3
Q ss_pred CCceEEEEecCCCCCcccHHHHHHHHhcCCCceEEEEEecCCCCC-------ccchhhHHHhhHHHHHHHhhcCCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTIP-------KTYVQDLMKKEASMLYRELIKEGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~Dly~dELe~~~~~g~l~~l~~AfSRe~~~~-------k~YVQd~L~~~~~~l~~~L~~~ga~iYV 634 (707)
.++++||||+|++++.+|.+||+++.+.....++++++||+.... .++++. +.+.+.+...+..+||
T Consensus 141 ~~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~v~i 214 (247)
T cd06184 141 GRPVTFIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDL------ALLRELLLPADADFYL 214 (247)
T ss_pred CCcEEEEEEcCchhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCH------HHHhhccCCCCCEEEE
Confidence 468999999999963399999999987733338999999874321 234432 1222222246789999
Q ss_pred eCChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy15286 635 CGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFG 682 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~ 682 (707)
|||++|++++++.|.+. |++ ..+++.|.|+
T Consensus 215 cGp~~m~~~v~~~l~~~-----G~~-------------~~~i~~e~f~ 244 (247)
T cd06184 215 CGPVPFMQAVREGLKAL-----GVP-------------AERIHYEVFG 244 (247)
T ss_pred ECCHHHHHHHHHHHHHc-----CCC-------------HHHeeeeccC
Confidence 99999999999998764 553 4588999987
No 39
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.62 E-value=1.4e-15 Score=154.99 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=64.5
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeC
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCG 636 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCG 636 (707)
...+++||||+|+.+ + +|.+||+.+.++...+++++++++++. +.++|+++.+.+.. ....++.+|+||
T Consensus 125 ~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~v~vcG 197 (224)
T cd06187 125 EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDG------PDWADHDIYICG 197 (224)
T ss_pred CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEEeCCCCCccCCCcccHHHHHHHhc------cccccCEEEEEC
Confidence 346899999999986 6 999999999877444478888888643 24678887765421 112568999999
Q ss_pred ChhhHHHHHHHHHHH
Q psy15286 637 DCTMAEHVYQTLKYV 651 (707)
Q Consensus 637 p~~M~~~V~~~L~~i 651 (707)
|++|++++++.|.+.
T Consensus 198 p~~~~~~v~~~l~~~ 212 (224)
T cd06187 198 PPAMVDATVDALLAR 212 (224)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998764
No 40
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.62 E-value=1.2e-15 Score=156.60 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=59.4
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCC-----CccchhhHHHhhHHHHHHHhhc-CCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI-----PKTYVQDLMKKEASMLYRELIK-EGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~-----~k~YVQd~L~~~~~~l~~~L~~-~ga~iYV 634 (707)
..++.||||+|+++ | +|.+||+++.++....+++.++||++.. .++++++.+.+ .++.+ .++.+|+
T Consensus 130 ~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyi 202 (231)
T cd06191 130 ESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFI 202 (231)
T ss_pred CCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHH------HhCccccCCeEEE
Confidence 36899999999985 7 9999999998764333799999987431 23344332221 12212 3579999
Q ss_pred eCChhhHHHHHHHHHHH
Q psy15286 635 CGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~i 651 (707)
|||++|++++++.|.+.
T Consensus 203 cGp~~mv~~~~~~l~~~ 219 (231)
T cd06191 203 CGPAGMMDAVETALKEL 219 (231)
T ss_pred ECCHHHHHHHHHHHHHc
Confidence 99999999999988654
No 41
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.61 E-value=2.8e-15 Score=152.72 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCCCCcc-chhhHHHhhHHHHHHHhhcCCcEEEEeCCh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPTIPKT-YVQDLMKKEASMLYRELIKEGGHFYVCGDC 638 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~~~k~-YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~ 638 (707)
.++++||||+|+.+ + +|.+||+++.+. +.+ +++.+.|+++..... ++. .+.+. +.. ...+..+|||||+
T Consensus 125 ~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~---~~~--~~~~~~vyicGp~ 196 (222)
T cd06194 125 QGEIRLVHGARDPD-DLYLHPALLWLAREHPNF-RYIPCVSEGSQGDPRVRAG-RIAAH---LPP--LTRDDVVYLCGAP 196 (222)
T ss_pred CccEEEEEecCChh-hccCHHHHHHHHHHCCCe-EEEEEEccCCCCCcccccc-hhhhh---hcc--ccCCCEEEEeCCH
Confidence 47899999999996 6 999999999875 445 788889986532212 222 22111 111 1356899999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy15286 639 TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFG 682 (707)
Q Consensus 639 ~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~ 682 (707)
+|++++++.|.+. |++ ..+++.|.|+
T Consensus 197 ~m~~~~~~~L~~~-----Gv~-------------~~~i~~e~f~ 222 (222)
T cd06194 197 SMVNAVRRRAFLA-----GAP-------------MKRIYADPFE 222 (222)
T ss_pred HHHHHHHHHHHHc-----CCC-------------HHHeeecccC
Confidence 9999999998764 564 4567777663
No 42
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.60 E-value=2.7e-15 Score=153.53 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhcCCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIKEGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~~ga~iYV 634 (707)
.++++||||+|+++ | +|.+||+++++. ...++++.++|++.. +.++||++.+.+. + ..+..+|+
T Consensus 128 ~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~-------~-~~~~~v~~ 198 (227)
T cd06213 128 KRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEV-------L-LAATEAYL 198 (227)
T ss_pred CCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhh-------c-cCCCEEEE
Confidence 46799999999985 6 899999999865 333378888998642 1346777665431 2 35679999
Q ss_pred eCChhhHHHHHHHHHHH
Q psy15286 635 CGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~i 651 (707)
|||++|++++++.|.+.
T Consensus 199 CGp~~~~~~~~~~l~~~ 215 (227)
T cd06213 199 CGPPAMIDAAIAVLRAL 215 (227)
T ss_pred ECCHHHHHHHHHHHHHc
Confidence 99999999999888764
No 43
>PRK05713 hypothetical protein; Provisional
Probab=99.59 E-value=3.2e-15 Score=160.78 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCT 639 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~ 639 (707)
.++++||||+|+.+ | +|.+||++|.++ +.+ +++.+.++ ++++.+.+. . ....+.++|+|||++
T Consensus 220 ~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~-~~~~~~~~-------~~~~~l~~~----~--~~~~~~~vyiCGp~~ 284 (312)
T PRK05713 220 QGPIRLLHLARDSA-GHYLAEPLAALAGRHPQL-SVELVTAA-------QLPAALAEL----R--LVSRQTMALLCGSPA 284 (312)
T ss_pred CCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCc-EEEEEECc-------chhhhhhhc----c--CCCCCeEEEEeCCHH
Confidence 46899999999986 6 999999999876 445 67776653 244333211 0 012457899999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEecc
Q psy15286 640 MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGI 683 (707)
Q Consensus 640 M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~ 683 (707)
|++++.+.|.+. |++ ..|++.|.|+.
T Consensus 285 mv~~~~~~L~~~-----Gv~-------------~~~i~~e~F~~ 310 (312)
T PRK05713 285 SVERFARRLYLA-----GLP-------------RNQLLADVFLP 310 (312)
T ss_pred HHHHHHHHHHHc-----CCC-------------HHHeeeccccc
Confidence 999999999754 663 45788888874
No 44
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.59 E-value=6.1e-15 Score=157.05 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=59.7
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCC--------------CccchhhHHHhhHHHHHHHhh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI--------------PKTYVQDLMKKEASMLYRELI 626 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~--------------~k~YVQd~L~~~~~~l~~~L~ 626 (707)
.++++||||+|+.+ | +|.+||++|+++...+++++++||+++. .+++|++.+.+. ...
T Consensus 137 ~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~ 209 (289)
T PRK08345 137 YGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTD 209 (289)
T ss_pred CCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEecCCCCCcCccccccccccccccCchhhhhhhc------CCC
Confidence 46899999999985 7 9999999997764333789999986431 123444333221 111
Q ss_pred cCCcEEEEeCChhhHHHHHHHHHHH
Q psy15286 627 KEGGHFYVCGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 627 ~~ga~iYVCGp~~M~~~V~~~L~~i 651 (707)
..+..+|+|||++|++++.+.|.+.
T Consensus 210 ~~~~~vyiCGP~~m~~~v~~~L~~~ 234 (289)
T PRK08345 210 PKNTYAAICGPPVMYKFVFKELINR 234 (289)
T ss_pred ccccEEEEECCHHHHHHHHHHHHHc
Confidence 2456899999999999999998765
No 45
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.56 E-value=7.5e-15 Score=160.31 Aligned_cols=102 Identities=19% Similarity=0.344 Sum_probs=68.0
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCC-CceEEEEEecCCCCCccchhhHHHh-hH-HHHHHHhh-cCCcEEEEeC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKV-LTKSFLALSREPTIPKTYVQDLMKK-EA-SMLYRELI-KEGGHFYVCG 636 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~-l~~l~~AfSRe~~~~k~YVQd~L~~-~~-~~l~~~L~-~~ga~iYVCG 636 (707)
.++++||||+|+++ | +|.+||+++++... .++++.++||+.... .+.+.++.. .. +.+.++.. .....+|+||
T Consensus 137 ~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCG 214 (352)
T TIGR02160 137 RSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRFHLAHVLSREPREA-PLLSGRLDGERLAALLDSLIDVDRADEWFLCG 214 (352)
T ss_pred CceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcEEEEEEecCCCcCc-ccccCccCHHHHHHHHHhccCcccCCEEEEEC
Confidence 36899999999985 7 99999999987632 237888999875321 122222211 11 11111111 2346899999
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEecc
Q psy15286 637 DCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGI 683 (707)
Q Consensus 637 p~~M~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~ 683 (707)
|++|++++++.|.+. |++ ..+++.|.|+.
T Consensus 215 p~~m~~~v~~~L~~~-----Gv~-------------~~~i~~E~F~~ 243 (352)
T TIGR02160 215 PQAMVDDAEQALTGL-----GVP-------------AGRVHLELFYT 243 (352)
T ss_pred CHHHHHHHHHHHHHc-----CCC-------------HHHEEEEeccC
Confidence 999999999999765 553 45778888875
No 46
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.55 E-value=2e-14 Score=146.07 Aligned_cols=81 Identities=32% Similarity=0.483 Sum_probs=58.8
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
..+++||||+|+.+ | +|.+||++|.. + +++.++||+.. .+|.++++.+ +.+.+++.+.++.+|+|||++|
T Consensus 127 ~~~v~l~~~~r~~~-~~~~~~el~~l~~---~-~~~~~~s~~~~--~~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~~m 197 (218)
T cd06196 127 LEGNTLIFANKTEK-DIILKDELEKMLG---L-KFINVVTDEKD--PGYAHGRIDK--AFLKQHVTDFNQHFYVCGPPPM 197 (218)
T ss_pred CceEEEEEecCCHH-HHhhHHHHHHhhc---c-eEEEEEcCCCC--CCeeeeEECH--HHHHHhcCCCCCEEEEECCHHH
Confidence 46789999999985 7 99999999853 4 67888898653 3344444432 2233333334579999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
++++.+.|.+.
T Consensus 198 ~~~~~~~l~~~ 208 (218)
T cd06196 198 EEAINGALKEL 208 (218)
T ss_pred HHHHHHHHHHc
Confidence 99999988765
No 47
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.54 E-value=2.3e-14 Score=147.64 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcC--CCceEEEEEecCCCCC---ccchhhHHHhhHHHHHHHh-hcCCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQK--VLTKSFLALSREPTIP---KTYVQDLMKKEASMLYREL-IKEGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g--~l~~l~~AfSRe~~~~---k~YVQd~L~~~~~~l~~~L-~~~ga~iYV 634 (707)
.++++||||+|+.. + +|.+||+++.+.. .+ ++..++|+++... .+.+...+.. +.+-+.. ...+..||+
T Consensus 136 ~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~v~i 211 (241)
T cd06214 136 ASRVTLVYGNRTEA-SVIFREELADLKARYPDRL-TVIHVLSREQGDPDLLRGRLDAAKLN--ALLKNLLDATEFDEAFL 211 (241)
T ss_pred CCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCce-EEEEEecCCCCCcccccCccCHHHHH--HhhhhhcccccCcEEEE
Confidence 46899999999995 7 9999999997663 45 6778889865422 2333221111 1111111 134578999
Q ss_pred eCChhhHHHHHHHHHHH
Q psy15286 635 CGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~i 651 (707)
|||+.|++++.+.|.+.
T Consensus 212 cGp~~mv~~v~~~l~~~ 228 (241)
T cd06214 212 CGPEPMMDAVEAALLEL 228 (241)
T ss_pred ECCHHHHHHHHHHHHHc
Confidence 99999999999998664
No 48
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.54 E-value=3.5e-14 Score=145.28 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=58.6
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCCC----CccchhhHHHhhHHHHHHHhhc-CCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPTI----PKTYVQDLMKKEASMLYRELIK-EGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~~----~k~YVQd~L~~~~~~l~~~L~~-~ga~iYV 634 (707)
.++++||||+|+++ + +|.+||+++.++ ..+ ++++++++++.. ..+++... .+.+.+.+ .+..+||
T Consensus 131 ~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~~v~i 202 (231)
T cd06215 131 DADIVFIHSARSPA-DIIFADELEELARRHPNF-RLHLILEQPAPGAWGGYRGRLNAE------LLALLVPDLKERTVFV 202 (231)
T ss_pred CCcEEEEEecCChh-hhhHHHHHHHHHHHCCCe-EEEEEEccCCCCcccccCCcCCHH------HHHHhcCCccCCeEEE
Confidence 46799999999996 6 999999999886 445 788888886531 22344321 12222222 3468999
Q ss_pred eCChhhHHHHHHHHHHH
Q psy15286 635 CGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~i 651 (707)
|||++|++++++.|.+.
T Consensus 203 cGp~~m~~~~~~~l~~~ 219 (231)
T cd06215 203 CGPAGFMKAVKSLLAEL 219 (231)
T ss_pred ECCHHHHHHHHHHHHHc
Confidence 99999999999988654
No 49
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.54 E-value=5.6e-14 Score=146.73 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=63.3
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGD 637 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp 637 (707)
.++++||||+|+.+ | +|.+||+++.++..+ ++.+++||+.+ +..+|+++.+.+.. ....+.+||+|||
T Consensus 127 ~~~i~Li~~~r~~~-~~~~~~~L~~l~~~~~~-~~~~~~s~~~~~~~~~~g~v~~~l~~~~------~~~~~~~vyicGp 198 (253)
T cd06221 127 YGKVTLLYGARTPE-DLLFKEELKEWAKRSDV-EVILTVDRAEEGWTGNVGLVTDLLPELT------LDPDNTVAIVCGP 198 (253)
T ss_pred CCcEEEEEecCChH-HcchHHHHHHHHhcCCe-EEEEEeCCCCCCccCCccccchhHHhcC------CCcCCcEEEEECC
Confidence 46899999999996 6 999999999987555 78888998653 23567776554321 1125679999999
Q ss_pred hhhHHHHHHHHHHH
Q psy15286 638 CTMAEHVYQTLKYV 651 (707)
Q Consensus 638 ~~M~~~V~~~L~~i 651 (707)
+.|++++.+.|.+.
T Consensus 199 ~~mv~~~~~~L~~~ 212 (253)
T cd06221 199 PIMMRFVAKELLKL 212 (253)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999765
No 50
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.53 E-value=4.2e-14 Score=146.27 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=59.9
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhh-cCCcEEEEeCCh
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELI-KEGGHFYVCGDC 638 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~-~~ga~iYVCGp~ 638 (707)
..++++||||+|+.+ + +|.+||+.+.+++...++++++|++ +..+++.... +.+... ..++.+|+|||+
T Consensus 149 ~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~--~~~g~~~~~~------l~~~~~~~~~~~vyvcGp~ 219 (243)
T cd06216 149 PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHLLYTRE--ELDGRLSAAH------LDAVVPDLADRQVYACGPP 219 (243)
T ss_pred CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEEEEcCC--ccCCCCCHHH------HHHhccCcccCeEEEECCH
Confidence 347899999999986 6 9999999998663333788889986 2455654321 112222 245799999999
Q ss_pred hhHHHHHHHHHHH
Q psy15286 639 TMAEHVYQTLKYV 651 (707)
Q Consensus 639 ~M~~~V~~~L~~i 651 (707)
+|++++++.|.+.
T Consensus 220 ~m~~~~~~~l~~~ 232 (243)
T cd06216 220 GFLDAAEELLEAA 232 (243)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999998764
No 51
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.51 E-value=4e-14 Score=145.22 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=60.0
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-CCCceEEEEEecCCC-C---CccchhhHHHhhHHHHHHHh-hcCCcEEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-KVLTKSFLALSREPT-I---PKTYVQDLMKKEASMLYREL-IKEGGHFYV 634 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g~l~~l~~AfSRe~~-~---~k~YVQd~L~~~~~~l~~~L-~~~ga~iYV 634 (707)
.++++||||+|+.+ + +|.+||+++.++ +.+ +++.++||+.. + .++++.+.+.+ +.+ ...+..+||
T Consensus 135 ~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~-~~~~~~s~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~v~i 206 (235)
T cd06217 135 PVPFRLLYSARTAE-DVIFRDELEQLARRHPNL-HVTEALTRAAPADWLGPAGRITADLIA------ELVPPLAGRRVYV 206 (235)
T ss_pred CceEEEEEecCCHH-HhhHHHHHHHHHHHCCCe-EEEEEeCCCCCCCcCCcCcEeCHHHHH------hhCCCccCCEEEE
Confidence 46899999999996 6 999999999886 345 78889998732 1 23455432211 111 125679999
Q ss_pred eCChhhHHHHHHHHHHH
Q psy15286 635 CGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 635 CGp~~M~~~V~~~L~~i 651 (707)
|||++|+++|.+.|.+.
T Consensus 207 cGp~~m~~~v~~~l~~~ 223 (235)
T cd06217 207 CGPPAFVEAATRLLLEL 223 (235)
T ss_pred ECCHHHHHHHHHHHHHc
Confidence 99999999999998765
No 52
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.50 E-value=1.2e-13 Score=143.82 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=56.1
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
++++||||+|+.+ | +|.+||++|.. ++++ ++++.. +.++||++.+.+.... ..+..||+|||+.|
T Consensus 125 ~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~~-~~~~~~~~~~g~v~~~l~~~~~~------~~~~~vyiCGp~~m 191 (246)
T cd06218 125 IKVTVLLGFRSAD-DLFLVEEFEALGA-----EVYV-ATDDGSAGTKGFVTDLLKELLAE------ARPDVVYACGPEPM 191 (246)
T ss_pred CceEEEEEccchh-hhhhHHHHHhhCC-----cEEE-EcCCCCCCcceehHHHHHHHhhc------cCCCEEEEECCHHH
Confidence 5799999999996 6 99999998843 2333 233321 3467899877654321 24679999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
++++++.|.+.
T Consensus 192 v~~~~~~L~~~ 202 (246)
T cd06218 192 LKAVAELAAER 202 (246)
T ss_pred HHHHHHHHHhc
Confidence 99999999775
No 53
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.48 E-value=2.2e-13 Score=143.22 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=58.1
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCC---CccchhhHHHhhHHHHHHHhh-cCCcEEEEeC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI---PKTYVQDLMKKEASMLYRELI-KEGGHFYVCG 636 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~---~k~YVQd~L~~~~~~l~~~L~-~~ga~iYVCG 636 (707)
.++++||||+|+.+ + +|.+||++|.+.. .++++++++... ..++|++.+.+. .+. ..+.++|+||
T Consensus 130 ~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCG 199 (263)
T PRK08221 130 IKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLDEGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVG 199 (263)
T ss_pred CceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEecCCCCCCccCccccChhhHhc------cCCCcCCeEEEEEC
Confidence 46899999999996 6 9999999998743 356667765432 346676544321 011 2467899999
Q ss_pred ChhhHHHHHHHHHHH
Q psy15286 637 DCTMAEHVYQTLKYV 651 (707)
Q Consensus 637 p~~M~~~V~~~L~~i 651 (707)
|++|++++.+.|.+.
T Consensus 200 p~~mv~~~~~~L~~~ 214 (263)
T PRK08221 200 PPIMMKFTVLEFLKR 214 (263)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998764
No 54
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.47 E-value=4.1e-13 Score=141.22 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=64.9
Q ss_pred CceEEEEecCCCCCcccHHHHHHHHhc-CCCceEEEEEecCCCCCccchh-hHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMDLYSDEKSKMLDQ-KVLTKSFLALSREPTIPKTYVQ-DLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~Dly~dELe~~~~~-g~l~~l~~AfSRe~~~~k~YVQ-d~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
.++.|+|++|+.++..|.|| +.+.++ +....+...+++.. ..+|.. .++. ....+.+.++|+|||.+|
T Consensus 138 ~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~~~~~~~~~~~--~~g~~~~~~l~-------~~~~~~~r~~y~CGp~~f 207 (266)
T COG1018 138 ADVVLVHAARTPADLAFRDE-LELAAELPNALLLGLYTERGK--LQGRIDVSRLL-------SAAPDGGREVYLCGPGPF 207 (266)
T ss_pred CCEEEEEecCChhhcchhhH-HHHHhhCCCCeeEEEEEecCC--ccccccHHHHh-------ccCCCCCCEEEEECCHHH
Confidence 78999999999963399999 888876 33323444443222 233332 1221 112223389999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEecccc
Q psy15286 641 AEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFGITL 685 (707)
Q Consensus 641 ~~~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~~~~ 685 (707)
|++|+..|..+ |. ...|||.|.|+...
T Consensus 208 m~av~~~l~~~-----g~-------------~~~~vh~E~F~~~~ 234 (266)
T COG1018 208 MQAVRLALEAL-----GV-------------PDDRVHLEGFGPML 234 (266)
T ss_pred HHHHHHHHHHc-----CC-------------ChhcEEEeecCCCC
Confidence 99999999887 44 35699999999765
No 55
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.46 E-value=1.7e-13 Score=139.06 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHh-hcCCcEEEEeCChh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYREL-IKEGGHFYVCGDCT 639 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L-~~~ga~iYVCGp~~ 639 (707)
.++++||||+|+++ + +|.+||+++.++..+ +++++.++++. .....+.+. +.. ...+..+|||||++
T Consensus 123 ~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~vyicGp~~ 191 (216)
T cd06198 123 ARPVTLFYCVRDPE-DAVFLDELRALAAAAGV-VLHVIDSPSDG--RLTLEQLVR-------ALVPDLADADVWFCGPPG 191 (216)
T ss_pred CceEEEEEEECCHH-HhhhHHHHHHHHHhcCe-EEEEEeCCCCc--ccchhhhhh-------hcCCCcCCCeEEEECcHH
Confidence 46899999999996 6 999999999877644 67776665432 222222210 111 13467999999999
Q ss_pred hHHHHHHHHHHH
Q psy15286 640 MAEHVYQTLKYV 651 (707)
Q Consensus 640 M~~~V~~~L~~i 651 (707)
|++++++.|.+.
T Consensus 192 m~~~v~~~l~~~ 203 (216)
T cd06198 192 MADALEKGLRAL 203 (216)
T ss_pred HHHHHHHHHHHc
Confidence 999999999764
No 56
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.46 E-value=2.1e-13 Score=139.81 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=70.4
Q ss_pred cCCceEEEEecCCCCCcccHHHHHHHHhcCCCceEEEEEecCCCC-----CccchhhHHHhhHHHHHHHhhcCCcEEEEe
Q psy15286 561 ELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTI-----PKTYVQDLMKKEASMLYRELIKEGGHFYVC 635 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~Dly~dELe~~~~~g~l~~l~~AfSRe~~~-----~k~YVQd~L~~~~~~l~~~L~~~ga~iYVC 635 (707)
..+++.++||+|+..+.+|++|.++++++...++.|+|+|.+.++ ..+++...+.++ .+.++-.++.+.+|+|
T Consensus 303 SkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en--~Lk~h~aPEDceyYmC 380 (410)
T COG2871 303 SKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYEN--YLKDHEAPEDCEYYMC 380 (410)
T ss_pred ccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHHHHHHhh--hhhcCCCchheeEEee
Confidence 458899999999997559999999999996666999999988652 235566555543 2333333567899999
Q ss_pred CChhhHHHHHHHHHHHH
Q psy15286 636 GDCTMAEHVYQTLKYVF 652 (707)
Q Consensus 636 Gp~~M~~~V~~~L~~il 652 (707)
||+-|-.+|...|.++.
T Consensus 381 GPp~mNasvikmL~dlG 397 (410)
T COG2871 381 GPPLMNASVIKMLKDLG 397 (410)
T ss_pred CcchhhHHHHHHHHhcC
Confidence 99999999999998883
No 57
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.46 E-value=6.3e-13 Score=142.41 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=58.3
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC----CCccchhhHHHhhHHHHHHHhh-----cCCcE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT----IPKTYVQDLMKKEASMLYRELI-----KEGGH 631 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~----~~k~YVQd~L~~~~~~l~~~L~-----~~ga~ 631 (707)
..++.||||+|+.+ | +|.+||+++.+.+.+ +++.+.|+++. +..+||+..+.+.. + .... ..+..
T Consensus 195 ~~~i~liyg~r~~~-dl~~~~eL~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~v~~~~l~~~--~-~~~~~~~~~~~~~~ 269 (300)
T PTZ00319 195 RTKVFLVYANQTED-DILLRKELDEAAKDPRF-HVWYTLDREATPEWKYGTGYVDEEMLRAH--L-PVPDPQNSGIKKVM 269 (300)
T ss_pred CceEEEEEecCCHH-HhhHHHHHHHHhhCCCE-EEEEEECCCCCCCcccccceeCHHHHHhh--c-CCccccccccCCeE
Confidence 35899999999996 6 999999996655556 78888888532 13467765433211 0 0000 03468
Q ss_pred EEEeCChhhHH-HHHHHHHHH
Q psy15286 632 FYVCGDCTMAE-HVYQTLKYV 651 (707)
Q Consensus 632 iYVCGp~~M~~-~V~~~L~~i 651 (707)
+|+|||++|++ ++.+.|.++
T Consensus 270 vyiCGp~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 270 ALMCGPPPMLQMAVKPNLEKI 290 (300)
T ss_pred EEEECCHHHHHHHHHHHHHHc
Confidence 99999999998 567777655
No 58
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.45 E-value=5.6e-13 Score=136.39 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=60.4
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc--CCCceEEEEEecCCCC---CccchhhHHHhhHHHHHHHhh---cCCcEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ--KVLTKSFLALSREPTI---PKTYVQDLMKKEASMLYRELI---KEGGHF 632 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~--g~l~~l~~AfSRe~~~---~k~YVQd~L~~~~~~l~~~L~---~~ga~i 632 (707)
..+++||||+|+.+ + +|.+||+++.+. ..+ ++++++++++.. ..+++++.+.+ +.+. ..+..+
T Consensus 133 ~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~------~~~~~~~~~~~~~ 204 (234)
T cd06183 133 KTKISLLYANRTEE-DILLREELDELAKKHPDRF-KVHYVLSRPPEGWKGGVGFITKEMIK------EHLPPPPSEDTLV 204 (234)
T ss_pred CcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccE-EEEEEEcCCCcCCccccceECHHHHH------HhCCCCCCCCeEE
Confidence 46899999999985 6 999999999876 445 788888876431 24666643321 2221 245789
Q ss_pred EEeCChhhHH-HHHHHHHHH
Q psy15286 633 YVCGDCTMAE-HVYQTLKYV 651 (707)
Q Consensus 633 YVCGp~~M~~-~V~~~L~~i 651 (707)
|+|||++|++ ++++.|.+.
T Consensus 205 ~icGp~~~~~~~~~~~l~~~ 224 (234)
T cd06183 205 LVCGPPPMIEGAVKGLLKEL 224 (234)
T ss_pred EEECCHHHHHHHHHHHHHHc
Confidence 9999999999 999998654
No 59
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.44 E-value=2.6e-13 Score=146.71 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=56.3
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-C-CCceEEEEEecCCC-----CCccchhhHHHhhHHHHHHHhhc---CCc
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-K-VLTKSFLALSREPT-----IPKTYVQDLMKKEASMLYRELIK---EGG 630 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g-~l~~l~~AfSRe~~-----~~k~YVQd~L~~~~~~l~~~L~~---~ga 630 (707)
..+++|+||+|+.+ | +|.+||++|++. + .+ ++++++|++.. +..++|.+.+.. +.+.. ...
T Consensus 193 ~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~f-~v~~~ls~~~~~~~w~g~~G~V~~~ll~------~~~~~~~~~~~ 264 (325)
T PTZ00274 193 RTKLSFLFCNRTER-HILLKGLFDDLARRYSNRF-KVYYTIDQAVEPDKWNHFLGYVTKEMVR------RTMPAPEEKKK 264 (325)
T ss_pred CCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCcE-EEEEEeCCCCcccCCCCCCCccCHHHHH------HhcCCCccCCc
Confidence 35899999999995 7 999999999876 3 35 78889987521 134666543311 22211 225
Q ss_pred EEEEeCChhhHHHHHHHHH
Q psy15286 631 HFYVCGDCTMAEHVYQTLK 649 (707)
Q Consensus 631 ~iYVCGp~~M~~~V~~~L~ 649 (707)
.+|+|||++|+++|...-.
T Consensus 265 ~vylCGPp~Mm~av~~~~~ 283 (325)
T PTZ00274 265 IIMLCGPDQLLNHVAGTPM 283 (325)
T ss_pred EEEEeCCHHHHHHhcCCCc
Confidence 7999999999999966533
No 60
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.41 E-value=1.2e-12 Score=132.13 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=62.3
Q ss_pred CceEEEEecCCCCCcccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhhHH
Q psy15286 563 GKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAE 642 (707)
Q Consensus 563 g~i~LffG~R~~~~Dly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M~~ 642 (707)
.++.||||+|+.++.+|.+||+++. .. .+.++++++. ...++++.+.. + .++..+|+|||+.|++
T Consensus 125 ~~v~l~~~~r~~~~~~~~~~l~~~~-~~---~~~~~~~~~~--~~~~~~~~~~~--------~-~~~~~vyicGp~~m~~ 189 (211)
T cd06185 125 ADFELHYAGRSREDAAFLDELAALP-GD---RVHLHFDDEG--GRLDLAALLAA--------P-PAGTHVYVCGPEGMMD 189 (211)
T ss_pred CCEEEEEEeCCCcchhHHHHHhhhc-CC---cEEEEECCCC--CccCHHHHhcc--------C-CCCCEEEEECCHHHHH
Confidence 5789999999985338999999987 22 3556677643 23445444321 1 2467999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy15286 643 HVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIFG 682 (707)
Q Consensus 643 ~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~Dvw~ 682 (707)
++++.|.+. |++ ..+++.|.|+
T Consensus 190 ~~~~~l~~~-----gv~-------------~~~i~~e~F~ 211 (211)
T cd06185 190 AVRAAAAAL-----GWP-------------EARLHFERFA 211 (211)
T ss_pred HHHHHHHHc-----CCC-------------hhheEeeecC
Confidence 999999765 553 5678888875
No 61
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.41 E-value=1.1e-12 Score=137.72 Aligned_cols=80 Identities=18% Similarity=0.175 Sum_probs=56.9
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCC---CccchhhHHHhhHHHHHHHhh-cCCcEEEEeC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI---PKTYVQDLMKKEASMLYRELI-KEGGHFYVCG 636 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~---~k~YVQd~L~~~~~~l~~~L~-~~ga~iYVCG 636 (707)
.++++||||+|+.+ | +|.+||++|.++. +++.+++++.+. ..+|+++.+.+. .+. ..+.++|+||
T Consensus 128 ~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~~~~~~~~~~~g~v~~~l~~~------~~~~~~~~~v~lCG 197 (261)
T TIGR02911 128 IKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLDEAEEDYKGNIGLVTKYIPEL------TLKDIEEVQAIVVG 197 (261)
T ss_pred CceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEcCCCCCCcCCeeccCHhHHhc------cCCCccceEEEEEC
Confidence 46899999999996 6 9999999998753 345556654321 345666544321 011 2457899999
Q ss_pred ChhhHHHHHHHHHHH
Q psy15286 637 DCTMAEHVYQTLKYV 651 (707)
Q Consensus 637 p~~M~~~V~~~L~~i 651 (707)
|++|++++++.|.+.
T Consensus 198 p~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 198 PPIMMKFTVQELLKK 212 (261)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998775
No 62
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.34 E-value=4.9e-13 Score=120.64 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=60.5
Q ss_pred ccCCceEEEEecCCCCCc-ccHHHHHHHHhcCCC-ceEEEEEecCCCC---CccchhhHHHhhHHHHHHHhhcCCcEEEE
Q psy15286 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVL-TKSFLALSREPTI---PKTYVQDLMKKEASMLYRELIKEGGHFYV 634 (707)
Q Consensus 560 ~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l-~~l~~AfSRe~~~---~k~YVQd~L~~~~~~l~~~L~~~ga~iYV 634 (707)
+..++++||||+|+.+ | +|.+||+.+.+.... .+++.+ ++.+.+ .++||++.+.+.... ..+...+++|||
T Consensus 22 ~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~~~~~~~~--~~~~~~~~~v~i 97 (109)
T PF00175_consen 22 NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDLLLEDLLP--EKIDPDDTHVYI 97 (109)
T ss_dssp TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHHHHHHHHH--HHHCTTTEEEEE
T ss_pred CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceeehhHHHHHhhcc--cccCCCCCEEEE
Confidence 3568999999999996 7 999999999987433 133333 444322 478999988654332 233357889999
Q ss_pred eCChhhHHHHHH
Q psy15286 635 CGDCTMAEHVYQ 646 (707)
Q Consensus 635 CGp~~M~~~V~~ 646 (707)
|||++|+++|++
T Consensus 98 CGp~~m~~~v~~ 109 (109)
T PF00175_consen 98 CGPPPMMKAVRK 109 (109)
T ss_dssp EEEHHHHHHHHH
T ss_pred ECCHHHHHHhcC
Confidence 999999999874
No 63
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.33 E-value=4.1e-12 Score=132.39 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=52.3
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCC-CCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREP-TIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~-~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
.++.|+||+|+.+ | +|.+||+++.+ +++.. ++. .+.++||++.+.+.. ....+||+|||+.|
T Consensus 129 ~~v~l~~~~r~~~-d~~~~~el~~~~~------~~~~~-~~~~~~~~g~v~~~l~~~~--------~~~~~vyvCGp~~m 192 (250)
T PRK00054 129 VEVTTVLGARTKD-EVIFEEEFAKVGD------VYVTT-DDGSYGFKGFVTDVLDELD--------SEYDAIYSCGPEIM 192 (250)
T ss_pred CcEEEEEEcCCHH-HhhhHHHHHhcCC------EEEEe-cCCCCCcccchhHhHhhhc--------cCCCEEEEeCCHHH
Confidence 4689999999985 7 89999998431 22322 322 124678987765421 23458999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
++++.+.|.+.
T Consensus 193 ~~~v~~~l~~~ 203 (250)
T PRK00054 193 MKKVVEILKEK 203 (250)
T ss_pred HHHHHHHHHHc
Confidence 99999998774
No 64
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.31 E-value=6.8e-12 Score=129.34 Aligned_cols=75 Identities=25% Similarity=0.363 Sum_probs=51.8
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhhH
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMA 641 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M~ 641 (707)
++++||||+|+++ | +|.+||++. . ++.++.+.+..+..+++++.+.+. .......+|+|||++|+
T Consensus 114 ~~i~l~~~~r~~~-d~~~~~eL~~~---~---~~~~~~~~~~~~~~g~~~~~l~~~-------~~~~~~~vyicGp~~m~ 179 (233)
T cd06220 114 ADVTVLLGARTKE-ELLFLDRLRKS---D---ELIVTTDDGSYGFKGFVTDLLKEL-------DLEEYDAIYVCGPEIMM 179 (233)
T ss_pred CCEEEEEecCChH-HChhHHHHhhC---C---cEEEEEeCCCCcccceehHHHhhh-------cccCCCEEEEECCHHHH
Confidence 6899999999996 6 999999972 1 233333221112357787755432 11344689999999999
Q ss_pred HHHHHHHHHH
Q psy15286 642 EHVYQTLKYV 651 (707)
Q Consensus 642 ~~V~~~L~~i 651 (707)
+++.+.|.+.
T Consensus 180 ~~~~~~L~~~ 189 (233)
T cd06220 180 YKVLEILDER 189 (233)
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 65
>PLN02252 nitrate reductase [NADPH]
Probab=99.29 E-value=1.5e-11 Score=148.06 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=60.3
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhc--CCCceEEEEEecCC-C---CCccchhhHHHhhHHHHHHHhh--cCCcE
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQ--KVLTKSFLALSREP-T---IPKTYVQDLMKKEASMLYRELI--KEGGH 631 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~--g~l~~l~~AfSRe~-~---~~k~YVQd~L~~~~~~l~~~L~--~~ga~ 631 (707)
...+++||||+|+.+ | +|.+||++++++ +.+ ++++++|++. . +.+++|++.+.+ +++. ..+..
T Consensus 786 d~t~i~Liyg~Rt~~-Dil~~eEL~~la~~~p~~~-~v~~vls~~~~~~w~g~~GrV~~~ll~------~~l~~~~~~~~ 857 (888)
T PLN02252 786 DKTEMSLVYANRTED-DILLREELDRWAAEHPDRL-KVWYVVSQVKREGWKYSVGRVTEAMLR------EHLPEGGDETL 857 (888)
T ss_pred CCCcEEEEEEECCHH-HhhHHHHHHHHHHhCCCCE-EEEEEecCCCcCCCCCcCCcCCHHHHH------HhcccCCCCeE
Confidence 346899999999995 7 999999999876 345 7889999853 1 235677654332 1222 23567
Q ss_pred EEEeCChhhHHH-HHHHHHHH
Q psy15286 632 FYVCGDCTMAEH-VYQTLKYV 651 (707)
Q Consensus 632 iYVCGp~~M~~~-V~~~L~~i 651 (707)
+|+|||++|++. +...|.++
T Consensus 858 vyiCGPp~Mi~~av~~~L~~~ 878 (888)
T PLN02252 858 ALMCGPPPMIEFACQPNLEKM 878 (888)
T ss_pred EEEeCCHHHHHHHHHHHHHHc
Confidence 999999999984 77777654
No 66
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.27 E-value=1.4e-11 Score=126.05 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=41.2
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
..++.|+||+|+.+ | +|.+||+++.+.. . .+.. +.. +.+|+|||++|
T Consensus 154 ~~~v~l~~~~r~~~-~~~~~~el~~~~~~~-~-~~~~-----------~~~------------------~~v~~CGP~~m 201 (220)
T cd06197 154 TWDITLLWSLREDD-LPLVMDTLVRFPGLP-V-STTL-----------FIT------------------SEVYLCGPPAL 201 (220)
T ss_pred CCcEEEEEEecchh-hHHHHHHHHhccCCc-e-EEEE-----------EEe------------------ccEEEECcHHH
Confidence 46899999999996 7 9999998765311 1 1111 010 18999999999
Q ss_pred HHHHHHHHHH
Q psy15286 641 AEHVYQTLKY 650 (707)
Q Consensus 641 ~~~V~~~L~~ 650 (707)
+++|.+.+.+
T Consensus 202 ~~~~~~~~~~ 211 (220)
T cd06197 202 EKAVLEWLEG 211 (220)
T ss_pred HHHHHHHhhh
Confidence 9999887664
No 67
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.27 E-value=8.1e-12 Score=155.45 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHHHhc-C-CCceEEEEEecCCCC---CccchhhHHHhhHHHHHHHhh--cCCcEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKMLDQ-K-VLTKSFLALSREPTI---PKTYVQDLMKKEASMLYRELI--KEGGHFY 633 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~~~~-g-~l~~l~~AfSRe~~~---~k~YVQd~L~~~~~~l~~~L~--~~ga~iY 633 (707)
..+++||||+|+.+ | +|.+||+.|.++ + .+ ++++++|+++.. ..+||++.+.+ +.+. ..+..+|
T Consensus 1062 ~~~i~Llyg~r~~~-dl~~~~eL~~l~~~~~~~f-~~~~~ls~~~~~w~~~~G~i~~~~l~------~~l~~~~~~~~vy 1133 (1167)
T PTZ00306 1062 IESIRLIYAAEDVS-ELTYRELLESYRKENPGKF-KCHFVLNNPPEGWTDGVGFVDRALLQ------SALQPPSKDLLVA 1133 (1167)
T ss_pred CceEEEEEEeCCHH-HhhHHHHHHHHHHHCCCCE-EEEEEECCCCcccCCCCCCCCHHHHH------HhcCCCCCCeEEE
Confidence 46899999999996 6 999999999876 3 35 799999986532 35677653322 2221 2456899
Q ss_pred EeCChhhHHHHHHHHHHH
Q psy15286 634 VCGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 634 VCGp~~M~~~V~~~L~~i 651 (707)
||||++|++++.+.|.+.
T Consensus 1134 iCGP~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1134 ICGPPVMQRAVKADLLAL 1151 (1167)
T ss_pred EeCCHHHHHHHHHHHHHc
Confidence 999999999999998765
No 68
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.22 E-value=2.6e-11 Score=128.72 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=52.7
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
.++.||||+|+++ | +|.+||+++.+. ++++ +.+.. +.+++|++.+.+... + . .....||+|||++|
T Consensus 125 ~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v~-~~d~~~g~~G~v~~~l~~~~~---~-~-~~~~~vy~CGP~~M 192 (281)
T PRK06222 125 NKVITIIGARNKD-LLILEDEMKAVSDE-----LYVT-TDDGSYGRKGFVTDVLKELLE---S-G-KKVDRVVAIGPVIM 192 (281)
T ss_pred CeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEEE-cCCCCcCcccchHHHHHHHhh---c-C-CCCcEEEEECCHHH
Confidence 4799999999996 7 999999987642 2222 33321 246778776543210 1 1 11457999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
++++.+.+.+.
T Consensus 193 ~~~v~~~l~~~ 203 (281)
T PRK06222 193 MKFVAELTKPY 203 (281)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 69
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.20 E-value=4.4e-11 Score=124.61 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=52.7
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
.++.||||+|+.+ | +|.+||+++.++ ++++ +++.. +..+|+++.+.+... + . .....+|+|||++|
T Consensus 124 ~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~-~~~~~~~~~g~v~~~l~~~~~---~-~-~~~~~vyiCGP~~m 191 (248)
T cd06219 124 NRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT-TDDGSYGEKGFVTDPLKELIE---S-G-EKVDLVIAIGPPIM 191 (248)
T ss_pred CeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE-eCCCCCCccccchHHHHHHHh---c-c-CCccEEEEECCHHH
Confidence 4799999999995 7 999999998642 2222 44332 245678765543211 1 1 23457999999999
Q ss_pred HHHHHHHHHH
Q psy15286 641 AEHVYQTLKY 650 (707)
Q Consensus 641 ~~~V~~~L~~ 650 (707)
++++.+.|.+
T Consensus 192 ~~~~~~~l~~ 201 (248)
T cd06219 192 MKAVSELTRP 201 (248)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 70
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.18 E-value=1.6e-10 Score=121.02 Aligned_cols=79 Identities=27% Similarity=0.385 Sum_probs=61.2
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccch-hhHHHhhHHHHHHHhhcCCcEEEEeCCh
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYV-QDLMKKEASMLYRELIKEGGHFYVCGDC 638 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YV-Qd~L~~~~~~l~~~L~~~ga~iYVCGp~ 638 (707)
...+++++||+|++. | ++.+|++++... +++++.+-...+.++|| ++.+.+. +..+...+|+|||+
T Consensus 134 ~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~~~~~G~~G~v~~~~~~~~-------~~~~~~~v~~cGp~ 201 (252)
T COG0543 134 DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTDDGWKGRKGFVTTDVLKEL-------LDLEVDDVYICGPP 201 (252)
T ss_pred CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEECCCCCccCcceeHHHHhhh-------ccccCCEEEEECCH
Confidence 567999999999996 7 999999999875 45666663223468889 6666542 21256799999999
Q ss_pred hhHHHHHHHHHHH
Q psy15286 639 TMAEHVYQTLKYV 651 (707)
Q Consensus 639 ~M~~~V~~~L~~i 651 (707)
.|++++.+.+.+.
T Consensus 202 ~M~~~v~~~~~~~ 214 (252)
T COG0543 202 AMVKAVREKLKEY 214 (252)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999886
No 71
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.17 E-value=1e-10 Score=121.15 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=50.8
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
.++.||||+|+.+ | +|.+||+++. . ..+..+++.. +..++|++... ... ...+..+|+|||++|
T Consensus 124 ~~v~l~~~~r~~~-d~~~~~el~~~~----~--~~~~~~~~~~~~~~g~v~~~~~-----~~~--~~~~~~v~icGp~~m 189 (243)
T cd06192 124 NKVTVLAGAKKAK-EEFLDEYFELPA----D--VEIWTTDDGELGLEGKVTDSDK-----PIP--LEDVDRIIVAGSDIM 189 (243)
T ss_pred CeEEEEEecCcHH-HHHHHHHHHhhc----C--eEEEEecCCCCccceeechhhh-----hhh--cccCCEEEEECCHHH
Confidence 5799999999986 7 8999998872 1 2233344332 23456654311 011 123468999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
++++++.|.+.
T Consensus 190 v~~~~~~l~~~ 200 (243)
T cd06192 190 MKAVVEALDEW 200 (243)
T ss_pred HHHHHHHHHhh
Confidence 99999999876
No 72
>KOG0534|consensus
Probab=99.06 E-value=9.5e-10 Score=115.98 Aligned_cols=85 Identities=15% Similarity=0.304 Sum_probs=60.8
Q ss_pred ccCCceEEEEecCCCCCc-ccHHHHHHHHhcCC-CceEEEEEecCCC---CCccchhhHHHhhHHHHHHHhhc--C-CcE
Q psy15286 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKV-LTKSFLALSREPT---IPKTYVQDLMKKEASMLYRELIK--E-GGH 631 (707)
Q Consensus 560 ~~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~-l~~l~~AfSRe~~---~~k~YVQd~L~~~~~~l~~~L~~--~-ga~ 631 (707)
.+..+++|+|++++++ | ++++||+.++++.. -++++.+.++++. +.++||.. +.+..++.. + ...
T Consensus 183 ~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~------~~i~~~l~~~~~~~~~ 255 (286)
T KOG0534|consen 183 EDTTKISLLYANKTED-DILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITK------DLIKEHLPPPKEGETL 255 (286)
T ss_pred CCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCH------HHHHhhCCCCCCCCeE
Confidence 3467899999999996 7 99999999998833 4478889998873 35678852 223334432 2 368
Q ss_pred EEEeCChhhHHH-HHHHHHHH
Q psy15286 632 FYVCGDCTMAEH-VYQTLKYV 651 (707)
Q Consensus 632 iYVCGp~~M~~~-V~~~L~~i 651 (707)
++||||++|++. +...|.++
T Consensus 256 ~liCGPp~m~~~~~~~~le~L 276 (286)
T KOG0534|consen 256 VLICGPPPMINGAAQGNLEKL 276 (286)
T ss_pred EEEECCHHHHhHHHHHHHHhc
Confidence 999999999985 44444434
No 73
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.1e-09 Score=116.90 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=58.0
Q ss_pred CCceEEEEecCCCCCcccHHHHHHHHhcCCCceEEEEEecCCCCCccch-hhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 562 LGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTIPKTYV-QDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 562 ~g~i~LffG~R~~~~Dly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YV-Qd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
..++.|||.||+.++++|.+||+.+.++.....+|+- .++ .++|+ |+.+.+..+ .+....||+|||.+|
T Consensus 343 ~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHii--DSs--~~g~l~~e~ler~~~------~~~~~sv~fCGP~~m 412 (438)
T COG4097 343 DPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHII--DSS--KDGYLDQEDLERYPD------RPRTRSVFFCGPIKM 412 (438)
T ss_pred CCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEe--cCC--CCCccCHHHhhcccc------ccCcceEEEEcCHHH
Confidence 4689999999999766999999999997554467762 222 45677 333333211 012338999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
|++++..|+..
T Consensus 413 ~dsL~r~l~~~ 423 (438)
T COG4097 413 MDSLRRDLKKQ 423 (438)
T ss_pred HHHHHHHHHHc
Confidence 99999999876
No 74
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=99.01 E-value=1.9e-10 Score=117.90 Aligned_cols=78 Identities=47% Similarity=0.761 Sum_probs=58.7
Q ss_pred ccccccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecc-cccCccCccccc
Q psy15286 307 AYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRT-QGLSKVHSRKVW 384 (707)
Q Consensus 307 lcS~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~-~~~~~~~~~~~~ 384 (707)
.+.+|+...+++++|+|.+||++++|++.||+.+++.++|+||||||+..+|+++||||++|.|++ .|....|.|+.|
T Consensus 141 ~~~~~~~~~~~t~~dil~~fps~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 141 DYKDYIWRERRTLLDILEDFPSCKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHHHTTTTTHCHHHHHHHSTTBTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred hhhhhhhcccCcHHHHHhhCcccCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 344566677899999999999999999999999999999999999999999999999999999965 344555655544
No 75
>PRK05802 hypothetical protein; Provisional
Probab=98.98 E-value=7.4e-10 Score=119.83 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=48.8
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCC--CCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREP--TIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCT 639 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~--~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~ 639 (707)
.+++||||+|+++ | +|.+||+++..+... ........ ...+++|++.+.+ .+...||+|||..
T Consensus 199 ~~v~li~g~r~~~-~~~~~~el~~~~~~~~~---~~~~ddG~~~~~~~g~v~~~l~~----------~~~~~vy~CGP~~ 264 (320)
T PRK05802 199 NKIIVIIDKGPFK-NNFIKEYLELYNIEIIE---LNLLDDGELSEEGKDILKEIIKK----------EDINLIHCGGSDI 264 (320)
T ss_pred CcEEEEEeCCCHH-HHHHHHHHHHhhCceEE---EEecccCCCCccccchHHHHhcC----------CCCCEEEEECCHH
Confidence 3799999999985 6 999999998653211 11122111 1113344443321 1235799999999
Q ss_pred hHHHHHHHHHHH
Q psy15286 640 MAEHVYQTLKYV 651 (707)
Q Consensus 640 M~~~V~~~L~~i 651 (707)
|+++|.+.+.++
T Consensus 265 M~k~v~~~l~~~ 276 (320)
T PRK05802 265 LHYKIIEYLDKL 276 (320)
T ss_pred HHHHHHHHHhhh
Confidence 999999999774
No 76
>KOG1158|consensus
Probab=98.95 E-value=8.4e-10 Score=127.26 Aligned_cols=85 Identities=45% Similarity=0.693 Sum_probs=77.1
Q ss_pred cccccccccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccc--cCccCcc
Q psy15286 304 DSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG--LSKVHSR 381 (707)
Q Consensus 304 r~GlcS~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~--~~~~~~~ 381 (707)
..+-++.|+.+.+++++|||.+||||++|+..|+..++..++|+||||||+..||+++|+++++|.|.+.. ...+|+|
T Consensus 381 g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVc 460 (645)
T KOG1158|consen 381 GAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVC 460 (645)
T ss_pred chhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceeh
Confidence 34556778888999999999999999999999999999999999999999999999999999999998653 5677999
Q ss_pred ccccccc
Q psy15286 382 KVWQCPL 388 (707)
Q Consensus 382 ~~~~~~~ 388 (707)
++|+|.+
T Consensus 461 S~~L~~l 467 (645)
T KOG1158|consen 461 SNWLSNL 467 (645)
T ss_pred hhhHHhc
Confidence 9999975
No 77
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.91 E-value=2.8e-09 Score=127.84 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=53.4
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCC-CCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChhh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPT-IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTM 640 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~-~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~M 640 (707)
.++.||||+|+.+ | +|.+||+++.++ ++++. .++. +.++||++.+.+... + . .....||+|||++|
T Consensus 125 ~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~t-~dg~~g~~G~v~~~l~~~~~---~-~-~~~~~vy~CGP~~M 192 (752)
T PRK12778 125 NRVITILGGRSKE-LIILEDEMRESSDE-----VIIMT-DDGSYGRKGLVTDGLEEVIK---R-E-TKVDKVFAIGPAIM 192 (752)
T ss_pred CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEEE-CCCCCCCcccHHHHHHHHhh---c-C-CCCCEEEEECCHHH
Confidence 3799999999985 7 999999988642 23332 3321 357888876654211 0 0 12357999999999
Q ss_pred HHHHHHHHHHH
Q psy15286 641 AEHVYQTLKYV 651 (707)
Q Consensus 641 ~~~V~~~L~~i 651 (707)
+++|.+.+.+.
T Consensus 193 ~~~v~~~l~~~ 203 (752)
T PRK12778 193 MKFVCLLTKKY 203 (752)
T ss_pred HHHHHHHHHHc
Confidence 99999988663
No 78
>KOG1159|consensus
Probab=98.90 E-value=1.6e-09 Score=118.72 Aligned_cols=73 Identities=38% Similarity=0.534 Sum_probs=67.6
Q ss_pred ccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeeccccc-CccCcccccccccc
Q psy15286 315 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGL-SKVHSRKVWQCPLI 389 (707)
Q Consensus 315 ~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~-~~~~~~~~~~~~~~ 389 (707)
.+|+++|||.||+|+++|+++|++.+|..+||.|||+|++..|| ++|+||+|+|+|.-. .+.|.|+.|.|++.
T Consensus 338 pRRtilEvLeDF~sv~lp~~yl~d~~P~IrPR~fSIas~~~~~~--leL~VAiV~ykT~l~~pRrGlCS~wl~sL~ 411 (574)
T KOG1159|consen 338 PRRTILEVLEDFRSVKLPIDYLLDLLPVIRPRAFSIASSPGAHH--LELLVAIVEYKTILKEPRRGLCSNWLASLK 411 (574)
T ss_pred hhhhHHHHHHhchhccCCHHHHHHhccccccceeeeccCCCCCc--eeEEEEEEEEeeeccccccchhHHHHhhcC
Confidence 46899999999999999999999999999999999999999888 999999999999864 56799999999875
No 79
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.89 E-value=2.4e-09 Score=123.40 Aligned_cols=73 Identities=41% Similarity=0.698 Sum_probs=69.6
Q ss_pred cccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccc
Q psy15286 316 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPL 388 (707)
Q Consensus 316 ~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~ 388 (707)
.++++|+|.+||+|++|++.|+..+++..||.|||+||+..+|+++||||++|+|++.+..+.|.|+.|+|.+
T Consensus 344 ~~~~~d~L~~f~~~~l~~~~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~ 416 (587)
T COG0369 344 RRTLIDVLRDFPPAKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADL 416 (587)
T ss_pred cccHHHHHhhccccCCCHHHHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhh
Confidence 5799999999999999999999999999999999999999999999999999999987778899999999975
No 80
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.87 E-value=4.8e-09 Score=127.92 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=53.7
Q ss_pred CceEEEEecCCCCCc-ccHHH---HHHHHhc-CCCceEEEEEecCC-CCCccchhhHHHhhHHHHHHHhh-c--CCcEEE
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDE---KSKMLDQ-KVLTKSFLALSREP-TIPKTYVQDLMKKEASMLYRELI-K--EGGHFY 633 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dE---Le~~~~~-g~l~~l~~AfSRe~-~~~k~YVQd~L~~~~~~l~~~L~-~--~ga~iY 633 (707)
.++.||||+|+++ + +|.++ |++|++. +...+++++ +.++ .+.++||++.+.+... +... . ....||
T Consensus 777 ~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~~v~~t-tddgs~G~~G~Vt~~l~~ll~---~~~~~~~~~~~~Vy 851 (944)
T PRK12779 777 NHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQLDVIYT-TNDGSFGVKGFVTGPLEEMLK---ANQQGKGRTIAEVI 851 (944)
T ss_pred CCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCeEEEEE-ecCCCCCCccccChHHHHHHH---hcccccccCCcEEE
Confidence 4799999999984 6 66665 4556554 333245544 4332 1356889877654321 1100 0 135799
Q ss_pred EeCChhhHHHHHHHHHHH
Q psy15286 634 VCGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 634 VCGp~~M~~~V~~~L~~i 651 (707)
+|||++||++|.+.|.+.
T Consensus 852 ~CGP~~Mmkav~~~l~~~ 869 (944)
T PRK12779 852 AIGPPLMMRAVSDLTKPY 869 (944)
T ss_pred EECCHHHHHHHHHHHHHc
Confidence 999999999999988654
No 81
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=98.78 E-value=1.3e-08 Score=102.71 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=42.2
Q ss_pred cCCceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhcCCcEEEEeCChh
Q psy15286 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCT 639 (707)
Q Consensus 561 ~~g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~~ 639 (707)
...++.|+|++|+.+.. .|.+||....+-....++++.+++ +|+|||.+
T Consensus 137 ~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~~~~i~~T~------------------------------v~~CGp~~ 186 (210)
T cd06186 137 RTRRVKLVWVVRDREDLEWFLDELRAAQELEVDGEIEIYVTR------------------------------VVVCGPPG 186 (210)
T ss_pred CccEEEEEEEECCHHHhHHHHHHHHhhhhccCCceEEEEEee------------------------------EEEECchh
Confidence 34689999999999764 799999751111110023333332 99999999
Q ss_pred hHHHHHHHHHH
Q psy15286 640 MAEHVYQTLKY 650 (707)
Q Consensus 640 M~~~V~~~L~~ 650 (707)
|+++++.....
T Consensus 187 ~~~~~~~~~~~ 197 (210)
T cd06186 187 LVDDVRNAVAK 197 (210)
T ss_pred hccHHHHHHhh
Confidence 99999998877
No 82
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=98.77 E-value=1.9e-08 Score=103.95 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=42.1
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHh--hcCCcEEEEeCChh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYREL--IKEGGHFYVCGDCT 639 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L--~~~ga~iYVCGp~~ 639 (707)
.++.+|||+|+.+ | ++.++ ...+ +++.+.+++.. .+... .+ +...+ ......+|+|||++
T Consensus 146 ~~~~~~~~~~~~~-d~~~l~~------~~~~-~~~~~~~~~~~--~~~~~-~~------~~~~~~~~~~~~~vyicGp~~ 208 (235)
T cd06193 146 ARGTALIEVPDAA-DEQPLPA------PAGV-EVTWLHRGGAE--AGELA-LL------AVRALAPPAGDGYVWIAGEAG 208 (235)
T ss_pred CeEEEEEEECCHH-HccccCC------CCCc-EEEEEeCCCCC--cchhH-HH------HHhcccCCCCCeEEEEEccHH
Confidence 5799999999984 4 33222 1234 56655544332 21111 11 01111 12356899999999
Q ss_pred hHHHHHHHHHHH
Q psy15286 640 MAEHVYQTLKYV 651 (707)
Q Consensus 640 M~~~V~~~L~~i 651 (707)
|++++++.|.+.
T Consensus 209 mv~~v~~~l~~~ 220 (235)
T cd06193 209 AVRALRRHLREE 220 (235)
T ss_pred HHHHHHHHHHHc
Confidence 999999888653
No 83
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=98.61 E-value=6e-08 Score=108.75 Aligned_cols=82 Identities=43% Similarity=0.630 Sum_probs=72.3
Q ss_pred cccccccccccHHHHhhhCCCCC---CChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccc-cCccCcccc
Q psy15286 308 YEDWRHWRFPHLLEVLEQFPSIH---LPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG-LSKVHSRKV 383 (707)
Q Consensus 308 cS~~~~~~~~~~~d~l~~fps~~---~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~-~~~~~~~~~ 383 (707)
+..|+...+++++|+|.+||+|+ +|++.||+.+++.++|.|||+||+..+|++++|||.+|.|.+.. ....|.++.
T Consensus 138 ~~~~~~~~~~~~~dvL~~f~s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~ 217 (416)
T cd06204 138 YAKWIVEPHRNLLEVLQDFPSAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATN 217 (416)
T ss_pred HHHHHhhcCCCHHHHHHhCcccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehH
Confidence 44566667799999999999999 99999999999999999999999999999999999999997643 456688999
Q ss_pred cccccc
Q psy15286 384 WQCPLI 389 (707)
Q Consensus 384 ~~~~~~ 389 (707)
|++.+.
T Consensus 218 ~L~~~~ 223 (416)
T cd06204 218 WLLALK 223 (416)
T ss_pred HHHhhh
Confidence 998764
No 84
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.59 E-value=1e-07 Score=117.42 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=52.3
Q ss_pred CceEEEEecCCCCCc-ccHHHHHHHHhcCCCceEEEEEecCC-CCCccchhhHHHhhHHHHHHHhhc-CCcEEEEeCChh
Q psy15286 563 GKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREP-TIPKTYVQDLMKKEASMLYRELIK-EGGHFYVCGDCT 639 (707)
Q Consensus 563 g~i~LffG~R~~~~D-ly~dELe~~~~~g~l~~l~~AfSRe~-~~~k~YVQd~L~~~~~~l~~~L~~-~ga~iYVCGp~~ 639 (707)
.+++++||+|+++ + +|.+||+.+.. +++++ +.++ .+.+++|++.+.+. +.. ....+|+|||+.
T Consensus 126 ~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~-tddgs~G~~G~vt~~l~~~-------l~~~~~d~vy~CGP~~ 191 (1006)
T PRK12775 126 ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC-TDDGSYGKPGFVTAALKEV-------CEKDKPDLVVAIGPLP 191 (1006)
T ss_pred CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE-ECCCCCCCCCChHHHHHHH-------hccCCCCEEEEECCHH
Confidence 4689999999985 6 89999987643 23333 2222 13568888776542 212 234799999999
Q ss_pred hHHHHHHHHHHH
Q psy15286 640 MAEHVYQTLKYV 651 (707)
Q Consensus 640 M~~~V~~~L~~i 651 (707)
||++|.+.+.+.
T Consensus 192 Mm~av~~~~~~~ 203 (1006)
T PRK12775 192 MMNACVETTRPF 203 (1006)
T ss_pred HHHHHHHHHHHC
Confidence 999999988653
No 85
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=98.56 E-value=7.8e-08 Score=107.47 Aligned_cols=80 Identities=54% Similarity=0.894 Sum_probs=69.0
Q ss_pred ccccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccc---cCccCcccccc
Q psy15286 309 EDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG---LSKVHSRKVWQ 385 (707)
Q Consensus 309 S~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~---~~~~~~~~~~~ 385 (707)
.+|+...+++++|+|.+||+|++|++.||+.+++.++|.|||+|++..+|+.++|+|++|.|.+.. ....|.++.|+
T Consensus 141 ~~~~~~~~~~~~dvL~~f~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L 220 (406)
T cd06202 141 EDWKWYKNPNILEVLEEFPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWL 220 (406)
T ss_pred HHHHhccCCCHHHHHHhCCcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHH
Confidence 345666788999999999999999999999999999999999999998999999999999997642 23457788887
Q ss_pred ccc
Q psy15286 386 CPL 388 (707)
Q Consensus 386 ~~~ 388 (707)
+.+
T Consensus 221 ~~l 223 (406)
T cd06202 221 NGL 223 (406)
T ss_pred HhC
Confidence 654
No 86
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=98.40 E-value=3.5e-07 Score=102.01 Aligned_cols=76 Identities=39% Similarity=0.620 Sum_probs=67.6
Q ss_pred cccccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCcccccccc
Q psy15286 308 YEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCP 387 (707)
Q Consensus 308 cS~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~ 387 (707)
..+|+...+++++|||.+||||++|++.|+..+++.++|.|||+|++..+|+.++|+|.+|.+++ .|.++.|+|.
T Consensus 137 ~~~~~~~~~~~~~dvL~~f~s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~-----~G~~S~~L~~ 211 (398)
T cd06203 137 YTDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA-----KGLCTSWLES 211 (398)
T ss_pred HHHHHhhcCCCHHHHHHhCCCCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC-----CChhhHHHHH
Confidence 44666777889999999999999999999999999999999999999988999999999999875 4667788876
Q ss_pred c
Q psy15286 388 L 388 (707)
Q Consensus 388 ~ 388 (707)
+
T Consensus 212 l 212 (398)
T cd06203 212 L 212 (398)
T ss_pred h
Confidence 5
No 87
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=98.32 E-value=1.1e-06 Score=96.94 Aligned_cols=73 Identities=42% Similarity=0.678 Sum_probs=66.0
Q ss_pred cccHHHHhhhCC--CCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccccc
Q psy15286 316 FPHLLEVLEQFP--SIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCPL 388 (707)
Q Consensus 316 ~~~~~d~l~~fp--s~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~~ 388 (707)
.++++|+|.+|| ++++++++++..++++.+|.|||+|+|..+|++++|+|.+|.|.+.+....|.++.|+|..
T Consensus 115 ~~~~~d~L~~f~~~~~~~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~ 189 (360)
T cd06199 115 FAELRDVLDLLPIPPARLTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADR 189 (360)
T ss_pred cCcHHHHHHhccccCCCCCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhc
Confidence 479999999999 9999999999999999999999999999899999999999999876665678888888854
No 88
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=98.31 E-value=1.2e-06 Score=97.25 Aligned_cols=74 Identities=39% Similarity=0.606 Sum_probs=65.0
Q ss_pred ccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeeccc-ccCccCccccccccc
Q psy15286 315 RFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ-GLSKVHSRKVWQCPL 388 (707)
Q Consensus 315 ~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~-~~~~~~~~~~~~~~~ 388 (707)
.+++++|+|.+||+|++|++.|++.+++.++|.|||+|++..+|+.++|+|.+|.|.+. +....|.++.|++.+
T Consensus 134 ~~~~~~d~L~~f~~~~~~~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l 208 (382)
T cd06207 134 EKYTYLEVLKDFPSVRPTLEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGL 208 (382)
T ss_pred cCCCHHHHHHhCCcCCCCHHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhc
Confidence 56899999999999999999999999999999999999999889999999999998864 234567777777654
No 89
>PRK06214 sulfite reductase; Provisional
Probab=98.28 E-value=1.6e-06 Score=99.70 Aligned_cols=71 Identities=39% Similarity=0.603 Sum_probs=63.8
Q ss_pred cccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCccccccc
Q psy15286 316 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQC 386 (707)
Q Consensus 316 ~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~ 386 (707)
..+++|+|.+||++++|++.++..+++.++|+|||+|++..+|++++|+|.+|.|.+.+....|.++.|++
T Consensus 287 ~~~vldvL~~fp~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~ 357 (530)
T PRK06214 287 TLDVLAALEKFPGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLG 357 (530)
T ss_pred hCcHHHHHHhCCCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHH
Confidence 35899999999999999999999999999999999999998999999999999998655556677777776
No 90
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=98.24 E-value=1.7e-06 Score=96.11 Aligned_cols=79 Identities=37% Similarity=0.478 Sum_probs=65.8
Q ss_pred cccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccc--cCccCcccccccc
Q psy15286 310 DWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG--LSKVHSRKVWQCP 387 (707)
Q Consensus 310 ~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~--~~~~~~~~~~~~~ 387 (707)
.|+.+.+++++|+|.+||||++|+++++..+++.++|.|||+|++..+++.++|+|.++.+.+.. ....|.++.|++.
T Consensus 126 ~~~~~~~~~~~d~l~~f~s~~~~~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~ 205 (384)
T cd06206 126 AEVLAKRVSVLDLLERFPSIALPLATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS 205 (384)
T ss_pred HHHHhcCCCHHHHHHhCCCCCCCHHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh
Confidence 34556779999999999999999999999999999999999999988899999999999987531 2235667777664
Q ss_pred c
Q psy15286 388 L 388 (707)
Q Consensus 388 ~ 388 (707)
+
T Consensus 206 l 206 (384)
T cd06206 206 L 206 (384)
T ss_pred C
Confidence 3
No 91
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=98.20 E-value=2.6e-06 Score=99.76 Aligned_cols=71 Identities=34% Similarity=0.596 Sum_probs=65.7
Q ss_pred cccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCcccccccc
Q psy15286 316 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCP 387 (707)
Q Consensus 316 ~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~ 387 (707)
.++++|||.+|| +++++++++..+++..+|.|||+||+..+|+++||+|.+|+|.+.+....|.++.|++.
T Consensus 355 ~~~~~dvl~~fp-~~~~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~ 425 (597)
T TIGR01931 355 NTPLIDLIRDYP-ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAE 425 (597)
T ss_pred CCCHHHHHHHCC-CCCCHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHh
Confidence 679999999999 99999999999999999999999999989999999999999998777778888888875
No 92
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.20 E-value=3e-06 Score=99.03 Aligned_cols=71 Identities=31% Similarity=0.530 Sum_probs=63.8
Q ss_pred cccHHHHhhhCCCCCCChHHHHhccCCCCceeEEecCCCCCCCCcceeEEEEEeecccccCccCcccccccc
Q psy15286 316 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGLSKVHSRKVWQCP 387 (707)
Q Consensus 316 ~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~sIsSs~~~~p~~i~l~v~~V~~~~~~~~~~~~~~~~~~~ 387 (707)
.++++|||.+|| +++++++++..+++.++|.|||+||+..+|+++||+|++|+|.+.+....|.++.|++.
T Consensus 358 ~~~~~dvL~~f~-~~~~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~ 428 (600)
T PRK10953 358 TTPIVDMVRFAP-AQLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLAD 428 (600)
T ss_pred CCCHHHHHHhCC-CCCCHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhh
Confidence 579999999997 79999999999999999999999999989999999999999987666667777777763
No 93
>PLN02292 ferric-chelate reductase
Probab=97.79 E-value=7e-05 Score=88.61 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCceEEEEecCCCCCc-ccHHHHH-------HHHhcCCCceEEEEEecCCCCCccchhhHHHhhHHHHHHHhhc----CC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKS-------KMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYRELIK----EG 629 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe-------~~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~~~~l~~~L~~----~g 629 (707)
..++.|+||+|+.+ | ++.|++. ++.++..+ ++.+.+.|+.+....|-++ +.+.+.+.+.. +.
T Consensus 464 ~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~~~~-~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~ 537 (702)
T PLN02292 464 IPKITLICAFKNSS-DLSMLDLILPTSGLETELSSFIDI-QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQ 537 (702)
T ss_pred CCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhcCCc-eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCC
Confidence 36899999999995 6 6665443 33344555 7888889886532222222 33334343321 45
Q ss_pred cEEEEeCChh
Q psy15286 630 GHFYVCGDCT 639 (707)
Q Consensus 630 a~iYVCGp~~ 639 (707)
..+.+|||+.
T Consensus 538 ~~~~~~Gp~~ 547 (702)
T PLN02292 538 PISPILGPNS 547 (702)
T ss_pred ceEEEeCCCc
Confidence 6899999983
No 94
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=97.77 E-value=5.4e-05 Score=89.85 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHH-----HHhcCCCceEEEEEecCCCCCccchhhHHHhh--HHHHHHHhhcCCcEEE
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSK-----MLDQKVLTKSFLALSREPTIPKTYVQDLMKKE--ASMLYRELIKEGGHFY 633 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~-----~~~~g~l~~l~~AfSRe~~~~k~YVQd~L~~~--~~~l~~~L~~~ga~iY 633 (707)
..++.|+|++|+.+ | .|.+|+.. +.+...+ ++++..+|+.. ....+++.+... .+.++ +..+..++.
T Consensus 456 ~~~V~LIw~vR~~~-dL~~~del~~~l~~~~~~~~~l-kl~iyVTRE~~-~~~rl~~~i~~~~~~~~~~--~~~~~~~~~ 530 (722)
T PLN02844 456 PKRVQLIYVVKKSQ-DICLLNPISSLLLNQSSNQLNL-KLKVFVTQEEK-PNATLRELLNQFSQVQTVN--FSTKCSRYA 530 (722)
T ss_pred CCcEEEEEEECCHH-HhhhHHHHHHHhHHhHHHhcCc-eEEEEECCCCC-CCCchhhHhhccchhhhcC--CCCCCCceE
Confidence 46899999999996 7 88888752 2233345 78888999875 334666666541 12222 334556899
Q ss_pred EeCCh
Q psy15286 634 VCGDC 638 (707)
Q Consensus 634 VCGp~ 638 (707)
+||+.
T Consensus 531 i~G~~ 535 (722)
T PLN02844 531 IHGLE 535 (722)
T ss_pred EeCCC
Confidence 99997
No 95
>PLN02631 ferric-chelate reductase
Probab=97.49 E-value=0.00016 Score=85.46 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCceEEEEecCCCCCc-ccHHHHHHH------HhcCCCceEEEEEecCCC
Q psy15286 562 LGKMTLFFGCQLKTMD-LYSDEKSKM------LDQKVLTKSFLALSREPT 604 (707)
Q Consensus 562 ~g~i~LffG~R~~~~D-ly~dELe~~------~~~g~l~~l~~AfSRe~~ 604 (707)
.+++.|+||+|+.+ | +|.|||+.+ .++-.+ ++...++|+++
T Consensus 445 ~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~~~ni-~i~iyVTR~~~ 492 (699)
T PLN02631 445 LPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDISRLNL-RIEAYITREDK 492 (699)
T ss_pred CCcEEEEEEECCHH-HhhhHHHHhhhccchhhhhcCce-EEEEEEcCCCC
Confidence 45899999999985 7 999999863 223355 78889999753
No 96
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=96.24 E-value=0.0024 Score=61.25 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=26.9
Q ss_pred ccCCceEEEEecCCCCCc-ccHHHHHHHHhc---CCCceEEEEEecCC
Q psy15286 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQ---KVLTKSFLALSREP 603 (707)
Q Consensus 560 ~~~g~i~LffG~R~~~~D-ly~dELe~~~~~---g~l~~l~~AfSRe~ 603 (707)
.....+.|++-+|+.+.- .|.++|+++... +.+ ++.+.++++.
T Consensus 32 ~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~-~~~iyvT~~~ 78 (156)
T PF08030_consen 32 SRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV-EVHIYVTRES 78 (156)
T ss_dssp ----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE-EEEEEETT--
T ss_pred ccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc-eEEEEEcCCc
Confidence 345789999999999766 899777666544 244 6777777654
No 97
>KOG3378|consensus
Probab=96.14 E-value=0.0019 Score=67.21 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.2
Q ss_pred hhcCCcEEEEeCChhhHHHHHHHHHHH
Q psy15286 625 LIKEGGHFYVCGDCTMAEHVYQTLKYV 651 (707)
Q Consensus 625 L~~~ga~iYVCGp~~M~~~V~~~L~~i 651 (707)
+....++||.|||..+|+.|.+.|+++
T Consensus 342 ~~~s~~DiY~~G~~~~M~~~~~~L~~L 368 (385)
T KOG3378|consen 342 LDLSECDIYMLGPNNYMRFVKQELVKL 368 (385)
T ss_pred cChhhCceeeeCcHHHHHHHHHHHHHh
Confidence 445789999999999999999999998
No 98
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=85.83 E-value=0.6 Score=41.19 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCcccccCCCCCCCCeEEEEEEEEEeeccCCCCCccccccccccccccccHHHHhhhCCCCCCChHHHHhccCCCCceeE
Q psy15286 269 PRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFY 348 (707)
Q Consensus 269 PR~YSIsSSp~~~p~~i~ltvavv~y~t~~~~~~~r~GlcS~~~~~~~~~~~d~l~~fps~~~~~~~lL~~L~~g~~~~~ 348 (707)
.|.|||+|+|. ..+.++|+|... ..|..|+| |..+++|+.+.+
T Consensus 48 ~R~yS~~s~~~-~~~~~~~~ik~~-----------~~G~~S~~-------------------------L~~l~~Gd~v~i 90 (99)
T PF00970_consen 48 SRPYSPASSPD-DKGYLEFAIKRY-----------PNGRVSRY-------------------------LHQLKPGDEVEI 90 (99)
T ss_dssp EEEEEBCSSTT-SSSEEEEEEEEC-----------TTSHHHHH-------------------------HHTSCTTSEEEE
T ss_pred ecceeEeeecC-CCCcEEEEEEec-----------cCCHHHHH-------------------------HHhCCCCCEEEE
Confidence 48999999994 456788888533 34778888 899999998766
Q ss_pred E
Q psy15286 349 S 349 (707)
Q Consensus 349 s 349 (707)
.
T Consensus 91 ~ 91 (99)
T PF00970_consen 91 R 91 (99)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=72.22 E-value=7.8 Score=41.86 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=40.5
Q ss_pred CCCcEEEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEccc
Q psy15286 86 SRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFAS 134 (707)
Q Consensus 86 ~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P~ 134 (707)
...++.++|+..+.++. +.+..+++++.|+.+..+.|+||.++.|.+.
T Consensus 21 ~~~~~~~~V~~i~~~~~-p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~ 68 (307)
T PLN03116 21 PKAPYTATIVSVERIVG-PKAPGETCHIVIDHGGNVPYWEGQSYGVIPP 68 (307)
T ss_pred CCCCEEEEEEeeEEccc-CCCCCceEEEEEecCCCCceecCceEeeeCC
Confidence 34567899999999996 5666789999999988899999999999754
No 100
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=54.68 E-value=28 Score=30.43 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=29.1
Q ss_pred EEEEeEEeeccCCCCCCCcEEEEEeeCC---CCCCCCCCCeeEEccc
Q psy15286 91 QCPLIKKWNLYGSQPVARTTLGIQMRKP---HDCAYEPGDHVGIFAS 134 (707)
Q Consensus 91 ~a~V~~n~~Lt~~~~~~r~v~hiel~l~---~~l~Y~pGD~l~I~P~ 134 (707)
.|+|++.+.+++ ++++++|+++ ..+.|.||.++.|.-.
T Consensus 1 ~~~v~~~~~~s~------~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 1 KAKVVEIEELSP------DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEEESS------SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred CEEEEEEEEeCC------CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 378999999997 6788888874 2377999999999866
No 101
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=48.94 E-value=24 Score=39.41 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=33.4
Q ss_pred ceeEEecCCCCC---CCCcceeEEEEEeeccc-ccCccCccccccccc
Q psy15286 345 PRFYSISSSPLA---HPNEIHLTVAVVTYRTQ-GLSKVHSRKVWQCPL 388 (707)
Q Consensus 345 ~~~~sIsSs~~~---~p~~i~l~v~~V~~~~~-~~~~~~~~~~~~~~~ 388 (707)
.|.|||+|++.. .++.++|+|-.+.|.+. +....|.++.|+|.+
T Consensus 145 ~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~L 192 (367)
T PLN03115 145 LRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDL 192 (367)
T ss_pred eeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhC
Confidence 589999998753 36789999998888743 333568888888865
No 102
>KOG0560|consensus
Probab=48.27 E-value=6.5 Score=44.61 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=34.5
Q ss_pred ChhccCceecccceeccCCC--CcHHHHHHHHHHHHHHHH
Q psy15286 1 MLGELGGERLLKLRAGDEMC--GQEQAFRSWAPEVFNVAC 38 (707)
Q Consensus 1 ~l~~lGa~r~~~~g~gD~~~--g~e~~f~~W~~~l~~~l~ 38 (707)
||.+|+|..++.+|+|+|+. |-+.++-.|...||.++.
T Consensus 28 r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~ 67 (638)
T KOG0560|consen 28 RLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALG 67 (638)
T ss_pred HHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhc
Confidence 58899999999999999974 889999999999999983
No 103
>KOG1160|consensus
Probab=48.27 E-value=12 Score=42.23 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=28.7
Q ss_pred hhccCceecccceeccCCCCcHHHHHHHHHHHHHHHHH
Q psy15286 2 LGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACE 39 (707)
Q Consensus 2 l~~lGa~r~~~~g~gD~~~g~e~~f~~W~~~l~~~l~~ 39 (707)
+..|||.|++|+|+||-+.+ ..+.|...+...|+.
T Consensus 160 i~~LG~~r~~p~G~~~~~~~---~id~W~~~~~~~Lk~ 194 (601)
T KOG1160|consen 160 ISRLGGRRIFPLGEVDMDSA---KIDEWTSLVAETLKD 194 (601)
T ss_pred HHhhcCceeeecCccccccc---cHHHHHHHHHHHHcC
Confidence 56799999999999998754 555999998887743
No 104
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=42.60 E-value=41 Score=33.82 Aligned_cols=37 Identities=14% Similarity=0.269 Sum_probs=31.0
Q ss_pred EEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEcc
Q psy15286 91 QCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFA 133 (707)
Q Consensus 91 ~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P 133 (707)
.++|++.+.+++ +++++.|+.+..+.|+||.++.|.-
T Consensus 2 ~~~v~~~~~~~~------~~~~~~l~~~~~~~~~pGQ~v~l~~ 38 (218)
T cd06196 2 TVTLLSIEPVTH------DVKRLRFDKPEGYDFTPGQATEVAI 38 (218)
T ss_pred ceEEEEEEEcCC------CeEEEEEcCCCcCCCCCCCEEEEEe
Confidence 467888888886 6888999887778999999998863
No 105
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=40.53 E-value=56 Score=33.15 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.8
Q ss_pred EEEEeEEeeccCCCCCCCcEEEEEeeCCCC--CCCCCCCeeEEccc
Q psy15286 91 QCPLIKKWNLYGSQPVARTTLGIQMRKPHD--CAYEPGDHVGIFAS 134 (707)
Q Consensus 91 ~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~--l~Y~pGD~l~I~P~ 134 (707)
.++|++++.+++ +++.+.|+.+.. ..|+||.++.|...
T Consensus 3 ~~~v~~~~~~~~------~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 42 (235)
T cd06217 3 VLRVTEIIQETP------TVKTFRLAVPDGVPPPFLAGQHVDLRLT 42 (235)
T ss_pred eEEEEEEEecCC------CeEEEEEECCCCCcCCcCCcCeEEEEEe
Confidence 578999999987 678888987666 78999999999754
No 106
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=38.21 E-value=68 Score=33.30 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=32.7
Q ss_pred cEEEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEccc
Q psy15286 89 VWQCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFAS 134 (707)
Q Consensus 89 ~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P~ 134 (707)
+..++|++.+.+++ +++.++|+.+....|+||.++.|...
T Consensus 4 ~~~~~V~~~~~~t~------d~~~l~l~~~~~~~~~pGQ~v~l~~~ 43 (250)
T PRK00054 4 PENMKIVENKEIAP------NIYTLVLDGEKVFDMKPGQFVMVWVP 43 (250)
T ss_pred ceEEEEEEEEEecC------CeEEEEEeCccccCCCCCcEEEEEeC
Confidence 45689999999987 67888888666688999999998744
No 107
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=37.98 E-value=64 Score=32.73 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=31.1
Q ss_pred EEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEccc
Q psy15286 91 QCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFAS 134 (707)
Q Consensus 91 ~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P~ 134 (707)
.|+|++++.+++ +++.+.|..+..+.|+||.++.|...
T Consensus 2 ~~~v~~~~~~t~------~~~~~~l~~~~~~~~~pGQ~~~l~~~ 39 (227)
T cd06213 2 RGTIVAQERLTH------DIVRLTVQLDRPIAYKAGQYAELTLP 39 (227)
T ss_pred eEEEEEEeecCC------CEEEEEEecCCCCCcCCCCEEEEEeC
Confidence 478899999986 67788888766678999999999743
No 108
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=35.08 E-value=68 Score=32.59 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=29.9
Q ss_pred EEEEeEEeeccCCCCCCCcEEEEEeeCC--CCCCCCCCCeeEEcc
Q psy15286 91 QCPLIKKWNLYGSQPVARTTLGIQMRKP--HDCAYEPGDHVGIFA 133 (707)
Q Consensus 91 ~a~V~~n~~Lt~~~~~~r~v~hiel~l~--~~l~Y~pGD~l~I~P 133 (707)
.|+|++++.+++ ++..+.|+.+ ..+.|+||.++.|..
T Consensus 2 ~~~v~~~~~~~~------~~~~~~l~~~~~~~~~~~pGQ~v~l~~ 40 (232)
T cd06212 2 VGTVVAVEALTH------DIRRLRLRLEEPEPIKFFAGQYVDITV 40 (232)
T ss_pred ceEEEEEeecCC------CeEEEEEEcCCCCcCCcCCCCeEEEEc
Confidence 578999999987 5778888863 357899999999974
No 109
>PRK08051 fre FMN reductase; Validated
Probab=33.94 E-value=79 Score=32.37 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=31.0
Q ss_pred EEEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEc
Q psy15286 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIF 132 (707)
Q Consensus 90 ~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~ 132 (707)
+.++|+++..+++ +++.+.|+.+..+.|+||.++.|.
T Consensus 3 ~~~~v~~i~~~~~------~~~~l~l~~~~~~~~~pGQ~v~l~ 39 (232)
T PRK08051 3 LSCKVTSVEAITD------TVYRVRLVPEAPFSFRAGQYLMVV 39 (232)
T ss_pred eEEEEEEEecCCC------CeEEEEEecCCCCccCCCCEEEEE
Confidence 5688999988886 678888887667899999999886
No 110
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=31.85 E-value=1e+02 Score=31.49 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=32.2
Q ss_pred CcEEEEEeEEeeccCCCCCCCcEEEEEeeCCCC--CCCCCCCeeEEcc
Q psy15286 88 KVWQCPLIKKWNLYGSQPVARTTLGIQMRKPHD--CAYEPGDHVGIFA 133 (707)
Q Consensus 88 ~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~--l~Y~pGD~l~I~P 133 (707)
..+.++|++.+.+++ +++.+.|+.+.. ..|+||.++.|..
T Consensus 5 ~~~~~~v~~~~~~t~------~~~~~~l~~~~~~~~~~~pGQ~v~l~~ 46 (238)
T cd06211 5 KDFEGTVVEIEDLTP------TIKGVRLKLDEPEEIEFQAGQYVNLQA 46 (238)
T ss_pred eEEeEEEEEEEecCC------CEEEEEEEcCCCCcCccCCCCeEEEEc
Confidence 346799999999997 678888887544 4899999999873
No 111
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=31.11 E-value=1e+02 Score=31.21 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=31.2
Q ss_pred EEEEEeEEeeccCCCCCCCcEEEEEeeCCC--CCCCCCCCeeEEcc
Q psy15286 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPH--DCAYEPGDHVGIFA 133 (707)
Q Consensus 90 ~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~--~l~Y~pGD~l~I~P 133 (707)
+.++|++.+.+++ +++.+.|+.+. ...|+||.++.|..
T Consensus 2 ~~~~V~~~~~~t~------~~~~l~l~~~~~~~~~~~pGQ~v~l~~ 41 (228)
T cd06209 2 FEATVTEVERLSD------STIGLTLELDEAGALAFLPGQYVNLQV 41 (228)
T ss_pred eeEEEEEEEEcCC------CeEEEEEEcCCCCcCccCCCCEEEEEe
Confidence 4688999999987 58888888754 57899999999864
No 112
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=30.12 E-value=98 Score=32.12 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=27.9
Q ss_pred EeEEeeccCCCCCCCcEEEEEeeCC-CCCCCCCCCeeEEccc
Q psy15286 94 LIKKWNLYGSQPVARTTLGIQMRKP-HDCAYEPGDHVGIFAS 134 (707)
Q Consensus 94 V~~n~~Lt~~~~~~r~v~hiel~l~-~~l~Y~pGD~l~I~P~ 134 (707)
+.....++. .....++++++|+.+ ....|+||.++.|.+.
T Consensus 3 ~~~~~~~~~-~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~ 43 (245)
T cd06200 3 LQARVLLNP-GSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPR 43 (245)
T ss_pred eEeeeecCC-CCCCCceEEEEEecCCCCCCccCCcEEEecCC
Confidence 344445554 222237899999985 6789999999999754
No 113
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=29.05 E-value=1.3e+02 Score=30.95 Aligned_cols=41 Identities=7% Similarity=0.060 Sum_probs=31.9
Q ss_pred cEEEEEeEEeeccCCCCCCCcEEEEEeeCCCC---CCCCCCCeeEEcccC
Q psy15286 89 VWQCPLIKKWNLYGSQPVARTTLGIQMRKPHD---CAYEPGDHVGIFASN 135 (707)
Q Consensus 89 ~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~---l~Y~pGD~l~I~P~N 135 (707)
...++|+++..+++ ++.+++|+.+.. ..|+||+++.|.-.+
T Consensus 6 ~~~~~v~~~~~~s~------~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 49 (247)
T cd06184 6 FRPFVVARKVAESE------DITSFYLEPADGGPLPPFLPGQYLSVRVKL 49 (247)
T ss_pred cEEEEEEEEEEcCC------CeEEEEEEeCCCCcCCCCCCCCEEEEEEec
Confidence 34688999999987 588888887432 789999999987543
No 114
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=28.08 E-value=1.3e+02 Score=32.72 Aligned_cols=42 Identities=7% Similarity=-0.099 Sum_probs=33.6
Q ss_pred CCCcEEEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEcc
Q psy15286 86 SRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFA 133 (707)
Q Consensus 86 ~~~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P 133 (707)
..-++.++|++.+.+++ +++.+.|+.+....|+||.++.|..
T Consensus 6 ~~~~~~~~V~~i~~~t~------~v~~l~l~~~~~~~f~pGQfv~l~~ 47 (332)
T PRK10684 6 PQCPNRMQVHSIVQETP------DVWTISLICHDFYPYRAGQYALVSI 47 (332)
T ss_pred CCCceeEEEEEEEccCC------CeEEEEEcCCCCCCcCCCCEEEEEe
Confidence 34457899999999997 5778888766678899999998853
No 115
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=27.83 E-value=1.1e+02 Score=31.00 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=30.2
Q ss_pred EEEEEeEEeeccCCCCCCCcEEEEEeeCCCC------CCCCCCCeeEEcc
Q psy15286 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPHD------CAYEPGDHVGIFA 133 (707)
Q Consensus 90 ~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~------l~Y~pGD~l~I~P 133 (707)
+.++|++...+++ +++.+.|+.+.+ ..|+||.++.|..
T Consensus 2 ~~~~v~~~~~~~~------~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~ 45 (236)
T cd06210 2 REAEIVAVDRVSS------NVVRLRLQPDDAEGAGIAAEFVPGQFVEIEI 45 (236)
T ss_pred ceEEEEEEeecCC------ceEEEEEEeCCcccccccCCcCCCCEEEEEc
Confidence 4688888988886 678888887543 7899999998863
No 116
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=27.82 E-value=1.3e+02 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.8
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCcEEE
Q psy15286 653 QHEGNLTEQNAEKLLLRLRDENRYHE 678 (707)
Q Consensus 653 ~~~~~~~~~~a~~~l~~L~~~gRy~~ 678 (707)
++..|++...|+.||..|+++|+...
T Consensus 22 A~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 22 ADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 33458999999999999999998754
No 117
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=27.18 E-value=1e+02 Score=31.22 Aligned_cols=36 Identities=11% Similarity=0.295 Sum_probs=28.0
Q ss_pred EEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEcc
Q psy15286 92 CPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFA 133 (707)
Q Consensus 92 a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P 133 (707)
++|+..+.+++ ++++++|+.+..+.|.||.++.|..
T Consensus 1 ~~v~~~~~~t~------~~~~l~l~~~~~~~~~pGQ~v~l~~ 36 (224)
T cd06189 1 CKVESIEPLND------DVYRVRLKPPAPLDFLAGQYLDLLL 36 (224)
T ss_pred CEEEEEEeCCC------ceEEEEEecCCCcccCCCCEEEEEc
Confidence 35677777775 5788888876678899999998874
No 118
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=26.43 E-value=1.2e+02 Score=30.89 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=30.8
Q ss_pred EEEEEeEEeeccCCCCCCCcEEEEEeeCCCC----CCCCCCCeeEEccc
Q psy15286 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPHD----CAYEPGDHVGIFAS 134 (707)
Q Consensus 90 ~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~----l~Y~pGD~l~I~P~ 134 (707)
+.++|++.+.+++ +++.+.|+.+.. ..|+||.++.|...
T Consensus 2 ~~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 2 HPLTVAEVVRETA------DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred ceEEEEEEEecCC------CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 4578889988886 577888887544 58999999999855
No 119
>PRK05713 hypothetical protein; Provisional
Probab=24.64 E-value=1.1e+02 Score=32.97 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=32.1
Q ss_pred EEEEEeEEeeccCCCCCCCcEEEEEeeCCCCCCCCCCCeeEEcc
Q psy15286 90 WQCPLIKKWNLYGSQPVARTTLGIQMRKPHDCAYEPGDHVGIFA 133 (707)
Q Consensus 90 ~~a~V~~n~~Lt~~~~~~r~v~hiel~l~~~l~Y~pGD~l~I~P 133 (707)
+.++|++++.+++ +++.++|+.+..+.|+||.++.|..
T Consensus 92 ~~~~V~~~~~~t~------dv~~l~l~~~~~~~~~~GQfv~l~~ 129 (312)
T PRK05713 92 LPARVVALDWLGG------DVLRLRLEPERPLRYRAGQHLVLWT 129 (312)
T ss_pred CCeEEEEEecCCC------CEEEEEEccCCcCCcCCCCEEEEec
Confidence 4699999999987 5888888876678999999999863
No 120
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.76 E-value=3e+02 Score=28.84 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=42.7
Q ss_pred cCCCceEEEEEecCCCC----CccchhhHHHhhHHHHHHHhhcCCcEEEEeCCh-hhHHHHHHHHHHHHHHh
Q psy15286 589 QKVLTKSFLALSREPTI----PKTYVQDLMKKEASMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHE 655 (707)
Q Consensus 589 ~g~l~~l~~AfSRe~~~----~k~YVQd~L~~~~~~l~~~L~~~ga~iYVCGp~-~M~~~V~~~L~~il~~~ 655 (707)
.|.-.-..+|||.|... +..++-+++.+..+...+.+...+..|-++|.. .+++++.+++.++-...
T Consensus 46 lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T 117 (233)
T PRK14841 46 LGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKT 117 (233)
T ss_pred cCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 36432346788987642 223444455444333334454678899999998 68999999998876554
No 121
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=22.56 E-value=1.6e+02 Score=31.92 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=32.8
Q ss_pred CcEEEEEeEEeeccCCCCCCCcEEEEEeeCC--CCCCCCCCCeeEEccc
Q psy15286 88 KVWQCPLIKKWNLYGSQPVARTTLGIQMRKP--HDCAYEPGDHVGIFAS 134 (707)
Q Consensus 88 ~~~~a~V~~n~~Lt~~~~~~r~v~hiel~l~--~~l~Y~pGD~l~I~P~ 134 (707)
+.+.++|++.+.+++ +++.++|+.+ ..+.|+||.++.|..+
T Consensus 101 ~~~~~~V~~~~~~~~------d~~~l~l~~~~~~~~~~~pGQfv~l~~~ 143 (339)
T PRK07609 101 KKLPCRVASLERVAG------DVMRLKLRLPATERLQYLAGQYIEFILK 143 (339)
T ss_pred eEEEEEEEEEEcCCC------cEEEEEEEcCCCCCCccCCCCeEEEECC
Confidence 345799999999886 5888889874 4578999999999743
No 122
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=22.24 E-value=1.1e+02 Score=31.07 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=20.5
Q ss_pred cEEEEEeeCCCCCCCCCCCeeEEccc
Q psy15286 109 TTLGIQMRKPHDCAYEPGDHVGIFAS 134 (707)
Q Consensus 109 ~v~hiel~l~~~l~Y~pGD~l~I~P~ 134 (707)
++.+++|+.+..+.|+||.++.|...
T Consensus 10 ~~~~~~l~~~~~~~~~pGQ~v~l~~~ 35 (232)
T cd06190 10 DVAEFRFALDGPADFLPGQYALLALP 35 (232)
T ss_pred CEEEEEEEcCCccccCCCCEEEEECC
Confidence 67788888766678999999988753
No 123
>PF11181 YflT: Heat induced stress protein YflT
Probab=20.97 E-value=3.3e+02 Score=24.43 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCcEEE
Q psy15286 643 HVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHE 678 (707)
Q Consensus 643 ~V~~~L~~il~~~~~~~~~~a~~~l~~L~~~gRy~~ 678 (707)
.++..|..+ |+++++|+.|-..|. +|+|+.
T Consensus 72 ~~~~~l~~l-----Gl~~~ea~~y~~~l~-~Gkivl 101 (103)
T PF11181_consen 72 ELRSKLESL-----GLSEDEAERYEEELD-QGKIVL 101 (103)
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHHHH-CCCEEE
Confidence 344444444 899999999999987 567653
No 124
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=20.73 E-value=1.6e+02 Score=29.66 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=26.9
Q ss_pred EEeEEeeccCCCCCCCcEEEEEeeCCCC--CCCCCCCeeEEc
Q psy15286 93 PLIKKWNLYGSQPVARTTLGIQMRKPHD--CAYEPGDHVGIF 132 (707)
Q Consensus 93 ~V~~n~~Lt~~~~~~r~v~hiel~l~~~--l~Y~pGD~l~I~ 132 (707)
+|++++.+++ ++++++|+.+.. ..|+||.++.|.
T Consensus 2 ~v~~~~~~t~------~~~~~~l~~~~~~~~~~~pGQ~v~l~ 37 (231)
T cd06215 2 RCVKIIQETP------DVKTFRFAAPDGSLFAYKPGQFLTLE 37 (231)
T ss_pred eEEEEEEcCC------CeEEEEEECCCCCcCCcCCCCeEEEE
Confidence 5777778886 678888887654 789999999876
No 125
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=20.07 E-value=69 Score=27.40 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.6
Q ss_pred CCCCCCeeEEcccCCH
Q psy15286 122 AYEPGDHVGIFASNKW 137 (707)
Q Consensus 122 ~Y~pGD~l~I~P~N~~ 137 (707)
.|++||.+.|+.+|+-
T Consensus 5 ~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 5 PYHAGDIVYVIYRNPH 20 (75)
T ss_pred ccCCCCEEEEEEcCCC
Confidence 6999999999999973
Done!