RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15286
(707 letters)
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 279 bits (715), Expect = 3e-84
Identities = 123/300 (41%), Positives = 185/300 (61%), Gaps = 6/300 (2%)
Query: 2 LGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISS--V 59
L ELGGER+LK+R GDE+CGQE+AFR+WA +VF AC+ FC+ DD + + S
Sbjct: 162 LEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNIEKPNNSLISNDR 221
Query: 60 TLNASTVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTT--LGIQMRK 117
+ + R + A L GLS VH ++V L+ + NL + +R+T + +
Sbjct: 222 SWKRNKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKS-SRSTIFVRLHTNG 280
Query: 118 PHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWK 177
+ Y+PGDH+G+F N DLV+ ++ RL + +++++L E +T+ VI +WK
Sbjct: 281 NQELQYQPGDHLGVFPGNHEDLVNALIERLEDAP-PANHVVKVEMLEERNTALGVISNWK 339
Query: 178 PHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRH 237
RLP ++ YLDITTPP P LQ FA+ AT +++ L +L+ YE+W+
Sbjct: 340 DESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKW 399
Query: 238 WRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 297
+ P ++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+V+Y T+
Sbjct: 400 GKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTR 459
Score = 184 bits (469), Expect = 7e-50
Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKE- 617
M L FGC+ +D +Y +E + ++ V + + A SREP PK YVQD+++++
Sbjct: 531 MNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQL 590
Query: 618 ASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
A +YR L ++GGH YVCGD TMA V + ++ + +G L+E++A + RLRD+NRYH
Sbjct: 591 AESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 650
Query: 678 EDIFGITLRTAEVHKSSRESARIRMYQSGP 707
EDIFG+TLRT EV R + + +S
Sbjct: 651 EDIFGVTLRTYEVTNRLRSESIAFIEESKK 680
Score = 111 bits (279), Expect = 1e-25
Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 42/256 (16%)
Query: 295 RTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSP 354
+G + A+ W F +V + + +P IS+
Sbjct: 173 MREGDELCGQEEAFRTWAKKVFKAACDVFC-----------VGDDVNIEKPNNSLISNDR 221
Query: 355 LAHPNEIHLT-VAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQ 413
N+ LT VA TQGLS VH ++V L+ + NL
Sbjct: 222 SWKRNKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNL------------------- 262
Query: 414 KDSSRESDGSQPVARTT--LGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGG 471
S +S R+T + + + Y+PGDH+G+F N DLV+ ++ RL
Sbjct: 263 --QSPKSS------RSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAP 314
Query: 472 IDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFAT 531
+ +++++L E +T+ VI +WK RLP ++ YLDITTPP P LQ FA+
Sbjct: 315 -PANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFAS 373
Query: 532 FATAPDDQEILTLLAT 547
AT +++ L +L+
Sbjct: 374 LATNEKEKQRLLVLSK 389
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 252 bits (646), Expect = 6e-75
Identities = 88/309 (28%), Positives = 137/309 (44%), Gaps = 20/309 (6%)
Query: 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQ--VISS 58
L +LG +R+ +L GD+ E+ F +W + + CE F ++ S Q ++
Sbjct: 132 RLEQLGAQRIFELGLGDDDGNLEEDFITWREQFWLAVCEHFGVEATGEESSIRQYELVVH 191
Query: 59 VTLNASTVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKP 118
++A+ V M S ++ + + L +Q R + +++
Sbjct: 192 TDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKL--NQGTERHLMHLELDIS 249
Query: 119 -HDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWK 177
YE GDHV ++ +N LV+ + L D D M L L E +S K
Sbjct: 250 DSKIRYESGDHVAVYPANDSALVNQLGKILGA---DLDVVMSLNNLDE--------ESNK 298
Query: 178 PHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSA----AYE 233
H S RT L+ YLDIT PP +L A +A+ P +QE+L +A+ S Y
Sbjct: 299 KHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYL 358
Query: 234 DWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVT 293
W H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+ VV
Sbjct: 359 SWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVE 418
Query: 294 YRTQGASIH 302
Y T+ I+
Sbjct: 419 YETKAGRIN 427
Score = 150 bits (381), Expect = 1e-38
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 496 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 554
Query: 619 SMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 555 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 613
Query: 678 EDIF 681
D++
Sbjct: 614 LDVW 617
Score = 115 bits (289), Expect = 7e-27
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 304 DSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHL 363
Y W H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+
Sbjct: 353 GKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHI 412
Query: 364 TVAVVTYRTQ 373
VV Y T+
Sbjct: 413 CAVVVEYETK 422
Score = 97.4 bits (243), Expect = 3e-21
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L D D M L L E +S K H
Sbjct: 255 YESGDHVAVYPANDSALVNQLGKILGA---DLDVVMSLNNLDE--------ESNKKHPFP 303
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATK 548
S RT L+ YLDIT PP +L A +A+ P +QE+L +A+
Sbjct: 304 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASS 349
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 248 bits (634), Expect = 5e-74
Identities = 66/307 (21%), Positives = 115/307 (37%), Gaps = 28/307 (9%)
Query: 6 GGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISSVTLNAST 65
++ LR D + + A + T S +S+ +
Sbjct: 28 IESQVELLRFDDSGRKDSEVLKQNAVNSNQSNVVIEDFESSLTRSVPPLSQASLNIPGLP 87
Query: 66 VRFLPMTTADSL---VTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTL---------GI 113
+L + +SL + +S + V+Q P+ K L + +TTL
Sbjct: 88 PEYLQVHLQESLGQEESQVSVTSADPVFQVPISKAVQLTTNDA-IKTTLLVELDISNTDF 146
Query: 114 QMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVI 173
Y+PGD + N V +L RL L + + L++ ++T
Sbjct: 147 S--------YQPGDAFSVICPNSDSEVQSLLQRLQLED-KREHCVLLKIKADTKKK---- 193
Query: 174 KSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAA-- 231
+ P SL+ + + L+I P A L+ + + ++ L L + A
Sbjct: 194 GATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAAD 253
Query: 232 YEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAV 291
Y + LL++L FPS P +LL+ L LQPR YS +SS L HP ++H +
Sbjct: 254 YSRFVRDACACLLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNI 313
Query: 292 VTYRTQG 298
V + +
Sbjct: 314 VEFLSTA 320
Score = 156 bits (396), Expect = 6e-41
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 561 ELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTI-----PKTYVQDLM 614
G M LFFGC+ K D L+ E L +LT ++ SR+ + P YVQD +
Sbjct: 411 NFGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDNI 470
Query: 615 KKEASMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDE 673
+ + R L++E GH YVCGD MA+ V+ L + E + + A K L L++E
Sbjct: 471 QLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEE 530
Query: 674 NRYHEDIF 681
RY +DI+
Sbjct: 531 KRYLQDIW 538
Score = 118 bits (297), Expect = 5e-28
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 304 DSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHL 363
+A Y + LL++L FPS P +LL+ L LQPR YS +SS L HP ++H
Sbjct: 250 GAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHF 309
Query: 364 TVAVVTYRTQG 374
+V + +
Sbjct: 310 VFNIVEFLSTA 320
Score = 102 bits (257), Expect = 4e-23
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
Y+PGD + N V +L RL L + + L++ ++T + P
Sbjct: 148 YQPGDAFSVICPNSDSEVQSLLQRLQLED-KREHCVLLKIKADTKKK----GATLPQHIP 202
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATK 548
SL+ + + L+I P A L+ + + ++ L L +K
Sbjct: 203 AGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSK 248
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 243 bits (623), Expect = 1e-73
Identities = 92/238 (38%), Positives = 143/238 (60%), Gaps = 4/238 (1%)
Query: 62 NASTVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTT--LGIQMRKPH 119
+ R + A L GLS VH ++V L+ + NL + +R+T + +
Sbjct: 3 KRNKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKS-SRSTIFVRLHTNGNQ 61
Query: 120 DCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPH 179
+ Y+PGDH+G+F N DLV+ ++ RL + +++++L E +T+ VI +WK
Sbjct: 62 ELQYQPGDHLGVFPGNHEDLVNALIERLEDAP-PANHVVKVEMLEERNTALGVISNWKDE 120
Query: 180 ERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWR 239
RLP ++ YLDITTPP P LQ FA+ AT +++ L +L+ YE+W+ +
Sbjct: 121 SRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGK 180
Query: 240 FPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQ 297
P ++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+V+Y T+
Sbjct: 181 NPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTR 238
Score = 167 bits (425), Expect = 1e-45
Identities = 53/126 (42%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKE- 617
M L FGC+ +D +Y +E + ++ V + + A SREP PK YVQD+++++
Sbjct: 310 MNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQL 369
Query: 618 ASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
A +YR L ++GGH YVCGD TMA V + ++ + +G L+E++A + RLRD+NRYH
Sbjct: 370 AESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 429
Query: 678 EDIFGI 683
EDIFG+
Sbjct: 430 EDIFGV 435
Score = 122 bits (307), Expect = 9e-30
Identities = 38/71 (53%), Positives = 54/71 (76%)
Query: 303 SDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH 362
YE+W+ + P ++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+H
Sbjct: 168 KGLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVH 227
Query: 363 LTVAVVTYRTQ 373
LTVA+V+Y T+
Sbjct: 228 LTVAIVSYHTR 238
Score = 113 bits (286), Expect = 4e-27
Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 31/194 (15%)
Query: 357 HPNEIHLT-VAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQKD 415
N+ LT VA TQGLS VH ++V L+ + NL
Sbjct: 3 KRNKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNL--------------------- 41
Query: 416 SSRESDGSQPVARTT--LGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGID 473
S +S R+T + + + Y+PGDH+G+F N DLV+ ++ RL
Sbjct: 42 QSPKSS------RSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAP-P 94
Query: 474 PDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFA 533
+ +++++L E +T+ VI +WK RLP ++ YLDITTPP P LQ FA+ A
Sbjct: 95 ANHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLA 154
Query: 534 TAPDDQEILTLLAT 547
T +++ L +L+
Sbjct: 155 TNEKEKQRLLVLSK 168
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 236 bits (603), Expect = 3e-68
Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 30/314 (9%)
Query: 2 LGELGGERLLKLRAGDEMCGQ-EQAFRSWAPEVFNVACETFCLDDDETLSDATQVIS--- 57
L G RL KL D+ G ++ + +W + V + LD+ E + +
Sbjct: 162 LSAAGAIRLGKLGEADDGAGTTDEDYMAWKDSILEVLKDELHLDEQEAKFTSQFQYTVLN 221
Query: 58 ----SVTLNASTVRFLPMT--TADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTL 111
S++L + +LP ++ L + + P++K L R +
Sbjct: 222 EITDSMSLGEPSAHYLPSHQLNRNADGIQLGPFDLSQPYIAPIVKSREL--FSSNDRNCI 279
Query: 112 GIQMRKP-HDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTST 170
+ + Y GDH+ ++ SN + V L+ NL DP+ +L+ L T
Sbjct: 280 HSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNL---DPETIFDLKPLDPT---- 332
Query: 171 EVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSA 230
++ + YL+IT P L FA D +E LTLL+ D
Sbjct: 333 ------VKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKD 386
Query: 231 AYEDWRHWRFPHLLEVLEQF----PSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH 286
+ ++ ++ + L+ +P LV + + PR+YSISSS L+ +H
Sbjct: 387 QFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVH 446
Query: 287 LTVAVVTYRTQGAS 300
+T V +
Sbjct: 447 VTSIVENFPNPELP 460
Score = 139 bits (353), Expect = 9e-35
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 560 QELGKMTLFFGCQLKTMDLYSDEKSKMLDQK-VLTKSFLALSREPTIPKTYVQDLMKKEA 618
LGK LF+G + LY DE + + + +A SR P K YVQD +K
Sbjct: 560 VSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYE 619
Query: 619 SMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
++ +I G YVCGD MA+ V L + ++T A +L+ L+ RY
Sbjct: 620 DQVFE-MINNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQ 678
Query: 678 EDIF 681
ED++
Sbjct: 679 EDVW 682
Score = 112 bits (281), Expect = 8e-26
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 303 SDSAAYEDWRHWRFPHLLEVLEQF----PSIHLPPALLVAQLTPLQPRFYSISSSPLAHP 358
D + ++ ++ + L+ +P LV + + PR+YSISSS L+
Sbjct: 383 KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEK 442
Query: 359 NEIHLTVAVVTYRTQGLSKVHSRK 382
+H+T V + L
Sbjct: 443 QTVHVTSIVENFPNPELPDAPPVV 466
Score = 92.2 bits (229), Expect = 2e-19
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
Y GDH+ ++ SN + V L+ NL DP+ +L+ L T
Sbjct: 292 YSTGDHLAVWPSNPLEKVEQFLSIFNL---DPETIFDLKPLDPT----------VKVPFP 338
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLAT 547
++ + YL+IT P L FA D +E LTLL+
Sbjct: 339 TPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSK 383
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 208 bits (531), Expect = 4e-60
Identities = 74/262 (28%), Positives = 111/262 (42%), Gaps = 34/262 (12%)
Query: 54 QVISSVTLNASTVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTL-- 111
+++ ++A+ V M S ++ + + L +Q R +
Sbjct: 27 ELVVHTDIDAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKL--NQGTERHLMHL 84
Query: 112 -------GIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLS 164
I+ YE GDHV ++ +N LV+ + L D D M L L
Sbjct: 85 ELDISDSKIR--------YESGDHVAVYPANDSALVNQLGKILGA---DLDVVMSLNNLD 133
Query: 165 ETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTL 224
E +S K H S RT L+ YLDIT PP +L A +A+ P +QE+L
Sbjct: 134 E--------ESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRK 185
Query: 225 LATDSA----AYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLA 280
+A+ S Y W H+L +L+ PS+ P L L LQ R+YSI+SS
Sbjct: 186 MASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKV 245
Query: 281 HPNEIHLTVAVVTYRTQGASIH 302
HPN +H+ VV Y T+ I+
Sbjct: 246 HPNSVHICAVVVEYETKAGRIN 267
Score = 153 bits (388), Expect = 2e-40
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE + K YVQ L+K++
Sbjct: 336 KEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS-HKVYVQHLLKQDR 394
Query: 619 SMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ LI+ G H YVCGD MA V T + G + A + +L + RY
Sbjct: 395 EHLWK-LIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYS 453
Query: 678 EDIF 681
D++
Sbjct: 454 LDVW 457
Score = 113 bits (286), Expect = 4e-27
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 304 DSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHL 363
Y W H+L +L+ PS+ P L L LQ R+YSI+SS HPN +H+
Sbjct: 193 GKELYLSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHI 252
Query: 364 TVAVVTYRTQG 374
VV Y T+
Sbjct: 253 CAVVVEYETKA 263
Score = 100 bits (252), Expect = 1e-22
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
YE GDHV ++ +N LV+ + L D D M L L E +S K H
Sbjct: 95 YESGDHVAVYPANDSALVNQLGKILGA---DLDVVMSLNNLDE--------ESNKKHPFP 143
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATK 548
S RT L+ YLDIT PP +L A +A+ P +QE+L +A+
Sbjct: 144 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASS 189
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 200 bits (511), Expect = 6e-58
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
Y+ GDH+G+ N +V+ + AR L D + + L+ E H L
Sbjct: 39 YQEGDHLGVIPRNYEGIVNRVTARFGL---DASQQIRLEAEEEKLA----------HLPL 85
Query: 183 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPH 242
+ L +Y+++ P L+ A P + L L + AY++ +
Sbjct: 86 AKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALL-EKQAYKEQVLAKRLT 144
Query: 243 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
+LE+LE++P+ + + +A L ++PR+YSISSSP + +TV+VV+
Sbjct: 145 MLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWS 200
Score = 152 bits (386), Expect = 2e-40
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
Q LG+ L+FGC+ D LY +E + ++T A SR P PKTYVQ +M+++
Sbjct: 270 QSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITL-HTAFSRMPNQPKTYVQHVMEQDG 328
Query: 619 SMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L L+ +G HFY+CGD + MA V TL + ++E +A L +L ++ RY
Sbjct: 329 KKLIE-LLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYA 387
Query: 678 EDIFG 682
+D++
Sbjct: 388 KDVWA 392
Score = 119 bits (300), Expect = 4e-29
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 303 SDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH 362
+ AY++ + +LE+LE++P+ + + +A L ++PR+YSISSSP +
Sbjct: 129 LEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQAS 188
Query: 363 LTVAVVTYRTQGLSKVH 379
+TV+VV+ +
Sbjct: 189 ITVSVVSGEAWSGYGEY 205
Score = 93.1 bits (232), Expect = 2e-20
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
Y+ GDH+G+ N +V+ + AR L D + + L+ E H L
Sbjct: 39 YQEGDHLGVIPRNYEGIVNRVTARFGL---DASQQIRLEAEEEKLA----------HLPL 85
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATK 548
+ L +Y+++ P L+ A P + L L K
Sbjct: 86 AKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEK 131
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
P450 reductase, FNR, modular protein, oxidoreductase;
HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
c.25.1.4 PDB: 1ddi_A*
Length = 374
Score = 168 bits (429), Expect = 1e-46
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 31/176 (17%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
Y+PGD +G++ N LV ++ L L DEP+ ++ +T
Sbjct: 45 YQPGDALGVWYQNDPALVKELVELLWL---KGDEPVTVE--GKTLP-------------- 85
Query: 183 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPH 242
L L + ++T +++ +AT + L L D A + +
Sbjct: 86 ----LNEALQWHFELTVNTAN-IVENYATLTRSET----LLPLVGDKAKLQHYAATT--P 134
Query: 243 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
+++++ F L L+ L PL PR YSI+SS NE+H+TV VV Y +G
Sbjct: 135 IVDMVR-FSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEG 189
Score = 154 bits (391), Expect = 2e-41
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 559 LQELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKE 617
+ GK LFFG T D LY E + + + VLT+ LA SR+ K YVQD ++++
Sbjct: 252 DEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQK-EKVYVQDKLREQ 310
Query: 618 ASMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRY 676
+ L+R I +G H YVCGD MA+ V Q L V G + + A++ L LR E RY
Sbjct: 311 GAELWR-WINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRY 369
Query: 677 HEDIF 681
D++
Sbjct: 370 QRDVY 374
Score = 106 bits (266), Expect = 8e-25
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 309 EDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVV 368
+H+ + + +F L L+ L PL PR YSI+SS NE+H+TV VV
Sbjct: 124 AKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVV 183
Query: 369 TYRTQG 374
Y +G
Sbjct: 184 RYDVEG 189
Score = 73.4 bits (181), Expect = 4e-14
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 27/106 (25%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
Y+PGD +G++ N LV ++ L L DEP+ ++ +T
Sbjct: 45 YQPGDALGVWYQNDPALVKELVELLWL---KGDEPVTVE--GKTLP-------------- 85
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATK 548
L L + ++T +AT + +L L+ K
Sbjct: 86 ----LNEALQWHFELTVNTA----NIVENYATLTRSETLLPLVGDK 123
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 142 bits (361), Expect = 4e-38
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 8/137 (5%)
Query: 549 MQNSRVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLT-KSFLALSREPTIP- 606
R Q G L FG LY +E ++ + + A+SRE P
Sbjct: 172 KDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQ 231
Query: 607 --KTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAE 664
+ Y+QD + + A L++ + + H Y+CG M E + L EG
Sbjct: 232 GGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEG----VTWS 287
Query: 665 KLLLRLRDENRYHEDIF 681
L+ R+H + +
Sbjct: 288 DYQKDLKKAGRWHVETY 304
Score = 83.2 bits (206), Expect = 1e-17
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 227 TDSAAYEDWRHWRFPHLLEVL--EQFPSIHLPPALLVAQLTPLQPRFYSISSSPLA---H 281
+H +F L + SI + P + P + R YSI+S+
Sbjct: 33 VKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVD 92
Query: 282 PNEIHLTVAVVTYRTQGA 299
I L V + Y+ +
Sbjct: 93 DKTISLCVRQLEYKHPES 110
Score = 83.2 bits (206), Expect = 1e-17
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 279 LAHPNEIHLTVAVVTYRTQG---ASIHS-----DSAAYEDWRHWRFPHLLEVL--EQFPS 328
+ H V V YR + S +H +F L + S
Sbjct: 1 MTQAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQS 60
Query: 329 IHLPPALLVAQLTPLQPRFYSISSSPLA---HPNEIHLTVAVVTYRTQGLSKVH 379
I + P + P + R YSI+S+ I L V + Y+ +
Sbjct: 61 IGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETV 114
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 140 bits (354), Expect = 5e-37
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 558 GLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLT-KSFLALSRE---PTIPKTYVQDL 613
+ G LF G + LY +E KM ++ + A+SRE K Y+Q
Sbjct: 191 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTR 250
Query: 614 MKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDE 673
M + A L+ L K+ + Y+CG M + + + + EG + + +L+
Sbjct: 251 MAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKA 306
Query: 674 NRYHEDIF 681
+++ +++
Sbjct: 307 EQWNVEVY 314
Score = 98.3 bits (245), Expect = 1e-22
Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 22/146 (15%)
Query: 161 QVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQE 220
Q+ S+ + H + + ++ P P +
Sbjct: 1 QIASDVEAPPPAPAKVEKHSKKMEEGI------TVNKFKPKTP----YVGRCLLN----- 45
Query: 221 ILTLLATDSAAYEDWRHWRFPHLLEV-LEQFPSIHLPPALLVAQLTPLQPRFYSISSSPL 279
T + D A E W H F H E+ + S+ + P P + R YSI+SS L
Sbjct: 46 --TKITGDDAPGETW-HMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSAL 102
Query: 280 AH---PNEIHLTVAVVTYRTQGASIH 302
+ L V + Y
Sbjct: 103 GDFGDAKSVSLCVKRLIYTNDAGETI 128
Score = 89.8 bits (223), Expect = 9e-20
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 275 SSSPLAHPNEIHLTVAVVTYR---------TQGASIHSDSAAYEDWRHWRFPHLLEV-LE 324
+ H ++ + V ++ I D A E W H F H E+
Sbjct: 13 PAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETW-HMVFSHEGEIPYR 71
Query: 325 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAH---PNEIHLTVAVVTYRTQG 374
+ S+ + P P + R YSI+SS L + L V + Y
Sbjct: 72 EGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDA 124
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 141 bits (357), Expect = 1e-36
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 558 GLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLT-KSFLALSRE---PTIPKTYVQDL 613
+ GK L FG LY D+ KM + + A+SRE K YVQ
Sbjct: 279 DYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSR 338
Query: 614 MKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDE 673
+ + A L+ + K H Y+CG M + +T + G N E++ ++ E
Sbjct: 339 VSEYADELFEMIQKPNTHVYMCGLKGMQPPIDETFTAEAEKRG----LNWEEMRRSMKKE 394
Query: 674 NRYHEDIF 681
+R+H +++
Sbjct: 395 HRWHVEVY 402
Score = 81.1 bits (200), Expect = 2e-16
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 12/168 (7%)
Query: 137 WDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLD 196
+ ++ + R+ G + ++ +E S + + P AS ++
Sbjct: 51 YARMNQEMQRITKLGGKIVSIRPAEDAAQI--VSEGQSSAQASAQSPMASSTKIVHPKTT 108
Query: 197 ITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRF--PHLLEVLEQFPSIH 254
T+ P ++ E+ D RH F + SI
Sbjct: 109 DTSVPVNIYRPKTPFLGKCIENYEL-----VDEGGSGTVRHVTFDISEGDLRYLEGQSIG 163
Query: 255 LPPALLVAQLTPLQPRFYSISSSPLAH---PNEIHLTVAVVTYRTQGA 299
+ P P + R YSI+S+ + L V + Y+ +
Sbjct: 164 IIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPES 211
Score = 72.2 bits (177), Expect = 1e-13
Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 13/137 (9%)
Query: 256 PPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHS--------DSAA 307
+ SS+ + HP +V V YR + + D
Sbjct: 79 QIVSEGQSSAQASAQSPMASSTKIVHPKTTDTSVPVNIYRPKTPFLGKCIENYELVDEGG 138
Query: 308 YEDWRHWRF--PHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAH---PNEIH 362
RH F + SI + P P + R YSI+S+ +
Sbjct: 139 SGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVS 198
Query: 363 LTVAVVTYRTQGLSKVH 379
L V + Y+ +
Sbjct: 199 LCVRQLEYQDPESGETV 215
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 138 bits (350), Expect = 1e-36
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 558 GLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKV-LTKSFLALSRE---PTIPKTYVQDL 613
+ G LF G LY +E + L Q + ALSRE + K YVQD
Sbjct: 189 NYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDK 248
Query: 614 MKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDE 673
+++ + +++ L+ G H Y CG M + TLK V + G ++ ++ L +L+
Sbjct: 249 IEEYSDEIFK-LLDGGAHIYFCGLKGMMPGIQDTLKKVAERRG----ESWDQKLAQLKKN 303
Query: 674 NRYHEDIF 681
++H +++
Sbjct: 304 KQWHVEVY 311
Score = 77.9 bits (192), Expect = 9e-16
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 3/71 (4%)
Query: 227 TDSAAYEDWRHWRFPHL--LEVLE-QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPN 283
A + H H + E Q + P P R YSI+S+
Sbjct: 40 VGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNF 99
Query: 284 EIHLTVAVVTY 294
+ V
Sbjct: 100 DGRTGSLCVRR 110
Score = 76.7 bits (189), Expect = 2e-15
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 307 AYEDWRHWRFPHL--LEVLE-QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHL 363
A + H H + E Q + P P R YSI+S+ +
Sbjct: 44 APGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRT 103
Query: 364 TVAVVTY 370
V
Sbjct: 104 GSLCVRR 110
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 133 bits (335), Expect = 1e-34
Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 553 RVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREP----TIPKT 608
+ ++ G +TL +G + D + + K A+SRE +
Sbjct: 187 LLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRM 246
Query: 609 YVQDLMKKEASMLYRELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLL 667
Y+ ++++A + +++ GG FY+CG M + V + ++ + + G E
Sbjct: 247 YISHRVREQAEAVK-KILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGTYEE-----FK 300
Query: 668 LRLRDENRYHEDIF 681
L ++ + +
Sbjct: 301 HHLEGAHQLFVETY 314
Score = 68.3 bits (167), Expect = 1e-12
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 251 PSIHLPPALLVAQLTPLQPRFYSISSSPLA---HPNEIHLTVAVVTYRTQGASIH 302
P R YSI+S + + I + + +I
Sbjct: 75 PGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQ 129
Score = 67.1 bits (164), Expect = 3e-12
Identities = 7/51 (13%), Positives = 12/51 (23%), Gaps = 3/51 (5%)
Query: 327 PSIHLPPALLVAQLTPLQPRFYSISSSPLA---HPNEIHLTVAVVTYRTQG 374
P R YSI+S + + I + +
Sbjct: 75 PGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDEN 125
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 123 bits (311), Expect = 2e-31
Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 17/137 (12%)
Query: 548 KMQNSRVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKV-LTKSFLALSRE--PT 604
+ + G +T+++G + LY +E S +
Sbjct: 194 AYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIHYVFSYKQNSD 253
Query: 605 IPKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAE 664
YVQD + K + Y+CG ++ V LK
Sbjct: 254 ATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILK--------------S 299
Query: 665 KLLLRLRDENRYHEDIF 681
+ + R H +++
Sbjct: 300 HDQFDEKKKKRVHVEVY 316
Score = 81.4 bits (201), Expect = 6e-17
Identities = 9/83 (10%), Positives = 21/83 (25%)
Query: 297 QGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLA 356
I ++ + + ++ + L R YSISSS
Sbjct: 52 HTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNM 111
Query: 357 HPNEIHLTVAVVTYRTQGLSKVH 379
+ + + + +
Sbjct: 112 ENLSVAIKIHKYEQTENAPNITN 134
Score = 79.1 bits (195), Expect = 3e-16
Identities = 8/74 (10%), Positives = 19/74 (25%)
Query: 225 LATDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNE 284
+ ++ + + ++ + L R YSISSS
Sbjct: 56 IIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNMENLS 115
Query: 285 IHLTVAVVTYRTQG 298
+ + +
Sbjct: 116 VAIKIHKYEQTENA 129
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase,
NOS, INOS, alternative splicing, calcium,
calmodulin-binding, FAD, FMN, heme, iron, metal-binding;
HET: FMN; 2.50A {Homo sapiens}
Length = 219
Score = 81.0 bits (200), Expect = 2e-17
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 2 LGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQVISSVTL 61
L LG +L + GDE+ GQE AFRSWA + F ACETF + + + S+VT
Sbjct: 149 LSHLGASQLTPMGEGDELSGQEDAFRSWAVQTFKAACETFDVRGKQHIQIPKLYTSNVTW 208
Query: 62 NASTVRFLP 70
+ R +
Sbjct: 209 DPHHYRLVQ 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 3e-12
Identities = 100/553 (18%), Positives = 171/553 (30%), Gaps = 188/553 (33%)
Query: 160 LQVLSETHTSTEVIKSWK-PHERLPRAS-LRTLLSRYLDITTPPPPALLQFFATFATAPD 217
+ L+ +H S E P AS L+ ++ L P P T A D
Sbjct: 6 TRPLTLSHGSLEH--VLLVPTASFFIASQLQEQFNKIL-----PEP-------TEGFAAD 51
Query: 218 DQEI--LTLLA-----TDSAAYEDWRHWRFPHLLE-VLEQFPS-------IHLPPALLVA 262
D+ L+ S E + +F +L L +F + IH L A
Sbjct: 52 DEPTTPAELVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFENCYLEGNDIHA----LAA 106
Query: 263 QLTPLQP----------RFY----SISSSPLAHPNEIHLTVAVVTYRT--------QGAS 300
+L + Y ++ P + L AV QG +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 301 ---------IHSDSAAY-EDWRHWRFPHLLEVLEQ-------FP-SIHLPPALLVAQLTP 342
++ D + L E++ F +++ L TP
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 343 LQPRFYSISSSPLAHPNEIHLT-VA--VVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQP 399
+ Y + S P++ P I + +A VVT + G + R + L +
Sbjct: 227 --DKDY-LLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 400 VAFAP------------VTVQF----RSDQ------------KDSSRESDGSQP-----V 426
+A +TV F R + +DS ++G P +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPSPMLSI 341
Query: 427 ARTTLG-IQMRKPHDCAYEPGD-HVGIFASNKWDLVSGILAR-LNLGGIDPDEPMELQVL 483
+ T +Q ++ P V I S LV+G A+ L + G P P L L
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEI--S----LVNG--AKNLVVSG--P--PQSLYGL 389
Query: 484 S----ETHTSTEVIKSWKPH-ERLPRASLRTLLSRYLDITTP---P--PPAL-------- 525
+ + + + +S P ER + S +R+L + +P PA
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFS-----NRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 526 ----------LQF--FATFATAPDDQE------------ILTL-----LATKMQNSRVIK 556
+Q + TF D + I+ L T+ + + ++
Sbjct: 445 KNNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 557 FG---LQELGKMT 566
FG LG +T
Sbjct: 504 FGPGGASGLGVLT 516
Score = 64.7 bits (157), Expect = 1e-10
Identities = 86/466 (18%), Positives = 141/466 (30%), Gaps = 170/466 (36%)
Query: 22 QEQAFRSWAPEVFNVACETFCLDDDET---------------------LSDATQVISSVT 60
QEQ F PE E F DD+ T + QV++
Sbjct: 34 QEQ-FNKILPE----PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC- 87
Query: 61 LNASTVRFLPMTTAD--SLVTGLSKVHSRKVWQC-PLIKKWNLYGSQPVARTTLGIQMRK 117
L +L D +L L + + + + LIK N AR K
Sbjct: 88 LTEFENCYL--EGNDIHALAAKLLQENDTTLVKTKELIK--NYIT----ARIMAKRPFDK 139
Query: 118 PHDCA-YE--PGDHVGIFASNKWDLVSGILARLNLG-GIDPDEPM-ELQVLSETHTS--T 170
+ A + + + A + G G G + D+ EL+ L +T+
Sbjct: 140 KSNSALFRAVGEGNAQLVA------IFG-------GQG-NTDDYFEELRDLYQTYHVLVG 185
Query: 171 EVIKSWKPH-ERLPRASLRT--LLSRYLDI--------TTPPPP------------ALLQ 207
++IK L R +L + ++ L+I TP ++Q
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 208 F--FATFATA----PDD------------QEILTLLATDSAAYEDWRHWR--FPHLLEVL 247
+ A P + Q ++T +A A + W + + VL
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI--AETDSWESFFVSVRKAITVL 303
Query: 248 --------EQFPSIHLPPALLVAQL-------TP-LQPRFYSISSSPLAH---------- 281
E +P+ LPP++L L +P L SIS+
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-----SISNLTQEQVQDYVNKTNS 358
Query: 282 --PNEIHLTVA--------VVT------------YRTQGASIHSDSAA--YEDWR----H 313
P + ++ VV+ R A D + + + R
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKFS 417
Query: 314 WRFPHLLEVLEQFPSIHLPPAL-LVAQLTPLQPRFYSISSSPLAHP 358
RF L V F S L PA L+ + L S ++ + P
Sbjct: 418 NRF---LPVASPFHSHLLVPASDLINK--DLVKNNVSFNAKDIQIP 458
Score = 51.6 bits (123), Expect = 1e-06
Identities = 87/525 (16%), Positives = 158/525 (30%), Gaps = 166/525 (31%)
Query: 252 SIHLPPALLVAQLTPLQPRFYSISSSP---LAHPNE----IHLTVAVVTYRTQGASIHSD 304
+ +P A + LQ +F I P A +E L + Y + +
Sbjct: 19 VLLVPTASFFI-ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS--LVEPS 75
Query: 305 SAAYEDWRHWRFPHLLE-VLEQFPS-------IHLPPALLVAQLTPLQP----------R 346
+F +L L +F + IH L A+L +
Sbjct: 76 KVG-------QFDQVLNLCLTEFENCYLEGNDIH----ALAAKLLQENDTTLVKTKELIK 124
Query: 347 FY----SISSSPLAHPNEIHLTVAVVTYRT--------QGLSKVHSRKVWQCPLIKKWNL 394
Y ++ P + L AV QG ++ ++ L +
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG----NTDDYFE-ELRDLYQT 179
Query: 395 YGSQPVAFAPVTVQFRSDQ-KDSSRESDGSQPVARTTLGIQ--MRKPHDCAYEPGDHVGI 451
Y ++F ++ + R + ++ V L I + P + P
Sbjct: 180 YHVLVGDL----IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN---TPDK--DY 230
Query: 452 FASNKWDLVS--GI----LAR----LNLGGIDPDEPMELQVLSETHTSTEVI-------- 493
S +S I LA L G P E + + T S ++
Sbjct: 231 LLSI---PISCPLIGVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAET 286
Query: 494 KSWKP-------------------HERLPRASLR-TLLSRYLDIT-TPPPPAL------- 525
SW+ +E P SL ++L L+ P P L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 526 --LQFF--ATFATAPDDQEI-LTLLATKMQNSR---VIK------FGLQ-ELGKMTLFFG 570
+Q + T + P +++ ++L+ N V+ +GL L K G
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLV-----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 571 C-QLKTMDLYSDEKSKMLDQKVLTKSFLALSREP-TIPKTYVQDLMKKEASMLYRELIKE 628
Q + +S+ K + FL P P + L+ + ++ ++L+K
Sbjct: 402 LDQSRI--PFSERK------LKFSNRFL-----PVASP--FHSHLLVPASDLINKDLVKN 446
Query: 629 GGHFYVCGDCTMAEHVYQTLKYVFQHEG-NLTEQNAEKLLLRLRD 672
F + VY T +G +L + + R+ D
Sbjct: 447 NVSFNA---KDIQIPVYDT------FDGSDLRVLSGS-ISERIVD 481
Score = 36.2 bits (83), Expect = 0.053
Identities = 30/166 (18%), Positives = 42/166 (25%), Gaps = 57/166 (34%)
Query: 158 MELQVLSETHTSTEVIKS-WKPHERLPRASLRTLLSRY----LDITTPPPPALLQFFATF 212
M+L + +++ + W RA Y LDI P L F
Sbjct: 1633 MDL------YKTSKAAQDVWN------RAD-NHFKDTYGFSILDIVINNPVNLTIHF--- 1676
Query: 213 ATAPDDQEIL-TLLATDSAAYEDWRHWRFPHLLEVLEQFPSIHL--PPALLVA-QLTPLQ 268
+ I A D + E+ E S LL A Q T Q
Sbjct: 1677 -GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--Q 1733
Query: 269 PRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHW 314
P A+ AA+ED +
Sbjct: 1734 P--------------------ALTL-----MEK----AAFEDLKSK 1750
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 3e-11
Identities = 86/544 (15%), Positives = 163/544 (29%), Gaps = 165/544 (30%)
Query: 93 PLIKKWNLYGSQPVARTTLGIQMRKPHDCAYE--PGDHV---GIFASNKWDLVSGILAR- 146
+ K+N V+R +++R+ E P +V G+ S K + +
Sbjct: 124 QVFAKYN------VSRLQPYLKLRQ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 147 ------------LNLGGID-PDEPME-LQVLSETHTSTEVIKSWKP-HERLPRASLRTLL 191
LNL + P+ +E LQ L +S + +L S++ L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 192 SRYLDITTPPPPALLQFFATFATAPDD---QEIL--------TLLATDSAAYEDWRHWRF 240
R L + P LL + + LL T RF
Sbjct: 235 RRLL-KSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTT-----------RF 274
Query: 241 PHLLEVL-----EQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH----LTVAV 291
+ + L H L ++ L ++ L P E+ +++
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSI 332
Query: 292 VTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTP--LQPRFYS 349
+ SI A +++W+H L ++E + L P + F
Sbjct: 333 I-----AESIRDGLATWDNWKHVNCDKLTTIIESS----------LNVLEPAEYRKMFDR 377
Query: 350 ISSSPLAHPNEIHLTVAV-------VTYRTQG--LSKVHSRKVWQCPLIKKWNLYGSQPV 400
+S P H+ + V ++K+H L++K
Sbjct: 378 LS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQP------- 421
Query: 401 AFAPVTVQFRSDQKDSSRESDGSQPVARTTLG----IQMRKPHDCAYEPGD-----HVG- 450
T+ S + + + + R+ + + D D H+G
Sbjct: 422 --KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 451 ----IFASNKWDLVSGILARLNLGGID----PDEPMELQVLSETHTSTEVIKSWKPH--- 499
I + L + L+ ++ D S +T + +K +KP+
Sbjct: 480 HLKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFYKPYICD 536
Query: 500 -----ER--------LPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLA 546
ER LP+ + S+Y D+ L+ A +D+ I
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDL--------LR----IALMAEDEAIFEEAH 584
Query: 547 TKMQ 550
++Q
Sbjct: 585 KQVQ 588
Score = 63.7 bits (154), Expect = 1e-10
Identities = 93/617 (15%), Positives = 187/617 (30%), Gaps = 160/617 (25%)
Query: 156 EPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATA 215
+ M +LS+ +I S R L L ++Q F
Sbjct: 39 QDMPKSILSKEEID-HIIMSKDAVSGTLR--LFWTLLSK-------QEEMVQKFVEEVLR 88
Query: 216 PDDQEILTLLAT-------DSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTP-- 266
+ + +++ + T + Y + R L + F ++ +L
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 267 --LQPRFYSISSSPLAHPNEIH---------LTVAVVTYRTQGASIHSDSAAYEDWRHWR 315
L+P + I + + V + D + W
Sbjct: 145 LELRPAKNVL----------IDGVLGSGKTWVALDVC--LSYKVQCKMDFKIF-----W- 186
Query: 316 FPHLLEVLEQFPSIHL----PPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYR 371
++L P ++ L L + +S H + I L + +
Sbjct: 187 -------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 372 TQGL--SKVHSR------KVWQCPLIKKWNLYGSQPVAFAPVTVQFRS--DQKDSSRESD 421
+ L SK + V +NL + + +T +F+ D ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCKIL----LTTRFKQVTDFLSAATTTH 288
Query: 422 GSQPVARTTLGIQMRKPHDCAYEPGDHVGIFASNKWDLVSGILARLNLGGID-PDE---- 476
S H P + + K+ L+ D P E
Sbjct: 289 ISL------------DHHSMTLTPDEVKSLLL--KY---------LDCRPQDLPREVLTT 325
Query: 477 -PMELQVLSET---HTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATF 532
P L +++E+ +T W + + L T++ L++ P + F
Sbjct: 326 NPRRLSIIAESIRDGLAT-----WDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRL 378
Query: 533 ATAPDDQEI----LTLLATKMQNSRVIKFGLQELGKMTLFFGCQLKTM-----DLYSDEK 583
+ P I L+L+ + S V+ + +L K +L Q K +Y + K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVE-KQPKESTISIPSIYLELK 436
Query: 584 SKMLDQKVLTKSFLALSREPTIPKTYVQ-DLMKKEASM-LYRELIKEGGHFYVCG---DC 638
K+ ++ L +S + IPKT+ DL+ Y + G H
Sbjct: 437 VKLENEYALHRSIVDHYN---IPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERM 490
Query: 639 TMAEHVYQTLKYVFQ---HEGNLTEQNAEKL--LLRLR--------DENRYHEDIFGIT- 684
T+ V+ +++ Q H+ + L L +L+ ++ +Y + I
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 685 -LRTAEVHKSSRESARI 700
L E + + +
Sbjct: 551 FLPKIEENLICSKYTDL 567
Score = 48.3 bits (114), Expect = 1e-05
Identities = 48/375 (12%), Positives = 110/375 (29%), Gaps = 111/375 (29%)
Query: 29 WAPEV---FNVACETFCLDDDETLSDATQVISSVTLNASTVRFLPMTTADSLVTGLSKVH 85
+ FN++C+ + ++D + ++ T + S T D + + L K
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 86 SRKVWQCP------------LI-----------KKWNLYGSQPVARTTLGIQMRKPHDC- 121
+ P +I W + I+
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---IES-----SL 363
Query: 122 -AYEPGDH------VGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIK 174
EP ++ + +F + + + +L+ + + + M V+++ H + V K
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLI-WFDVIKSDVMV--VVNKLHKYSLVEK 419
Query: 175 SWKPHE-RLP------------RASL-RTLLSRY-----LDITTPPPPALLQFFATFATA 215
K +P +L R+++ Y D PP L Q+F +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--- 476
Query: 216 PDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSIS 275
I + H + E + F + L L+ + S
Sbjct: 477 -----I---------GH----HLKNIEHPERMTLFRMVFL-------DFRFLEQKIRHDS 511
Query: 276 SSPLAHPNEIHLTVAVVTYRTQGASIHSDSAAYEDWRHWRFPHLLEVLEQF-----PSIH 330
++ A + ++ + Y+ I + YE L+ + F ++
Sbjct: 512 TAWNASGSILNTLQQLKFYKPY---ICDNDPKYE--------RLVNAILDFLPKIEENLI 560
Query: 331 LPPALLVAQLTPLQP 345
+ ++ +
Sbjct: 561 CSKYTDLLRIALMAE 575
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase,
hemoprotein, flavoprotein, electron transfer,
oxidoreductase; HET: HEM FMN; 2.03A {Bacillus
megaterium} SCOP: c.23.5.1
Length = 191
Score = 38.9 bits (91), Expect = 0.002
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 2 LGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETLSDATQV 55
L G E + D E + W +++ F LD + + + + +
Sbjct: 131 LAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYFNLDIENSEDNKSTL 184
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component;
electron transport; HET: FMN; NMR {Escherichia coli}
SCOP: c.23.5.2
Length = 167
Score = 29.5 bits (67), Expect = 2.4
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 2 LGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETF 41
L ELGGERLL D + A W V +
Sbjct: 120 LAELGGERLLDRVDADV--EYQAAASEWRARVVDALKSRA 157
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 30.2 bits (67), Expect = 2.7
Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 5/164 (3%)
Query: 303 SDSAAYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIH 362
+ SA+ W ++ L ++ + P + +S + +
Sbjct: 647 TGSASPLSWAMAQYVRLAAGVKAGAPVETPQNVAARYAAGTPLSSPELSVTAPEALSTAD 706
Query: 363 LTVAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQ-PVAFAPVTVQFRSDQKDSSRESD 421
AVV T S + + A V + D +
Sbjct: 707 SATAVVRGTTNAAKVYVSVNGTATEAPVTDGTFSLDVALTGAKNKVTVAAVAADGGTAVE 766
Query: 422 GSQPVARTTLGIQMRKPHDCAYEPGDHV----GIFASNKWDLVS 461
+ + + P PG + + +DL
Sbjct: 767 DRTVLYYGSRIGALSDPAGDDNGPGTYRYPTNSAYVPGAFDLTG 810
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 30.0 bits (67), Expect = 2.7
Identities = 24/181 (13%), Positives = 42/181 (23%), Gaps = 9/181 (4%)
Query: 198 TTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPHLLEVLEQFPSIHLPP 257
P F A D + + + + WR P +V P
Sbjct: 180 LEPAYEMEQHVFTELPLAGLDPATFETVMAAAYSVSLFTDWRAPGFRQVW--LKRRTDRP 237
Query: 258 ALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQGASIH-SDSAAYEDWRHWRF 316
P + + + P + E R + S+ E +
Sbjct: 238 LDGFPYAAPAAEKMHPVPGMPAVNCTEQFGVPGPWHERLPHFRAEFTPSSGAELQSEYLM 297
Query: 317 P--HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPN-EIHLTVAVVTYRTQ 373
P H L L +I L L + R + + L+ +
Sbjct: 298 PREHALAALHAMDAIR---ETLAPVLQTCEIRTVAADAQWLSPAYGRDTVAAHFTWVEDT 354
Query: 374 G 374
Sbjct: 355 A 355
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 29.8 bits (68), Expect = 3.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI 152
P V + A N D+V ILA LG +
Sbjct: 52 RPQQRVAVVAPNSADVVIAILALHRLGAV 80
Score = 29.8 bits (68), Expect = 3.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
P V + A N D+V ILA LG +
Sbjct: 52 RPQQRVAVVAPNSADVVIAILALHRLGAV 80
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 29.3 bits (66), Expect = 4.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 249 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTV 289
Q+ S+ + V L Q R YS+S P + ++V
Sbjct: 189 QYTSVAID----VPALGLQQIRQYSLSDMP--NGRTYRISV 223
Score = 29.3 bits (66), Expect = 4.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 325 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTV 365
Q+ S+ + V L Q R YS+S P + ++V
Sbjct: 189 QYTSVAID----VPALGLQQIRQYSLSDMP--NGRTYRISV 223
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 29.3 bits (66), Expect = 5.4
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 249 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTV 289
Q+ + L P + R YS++ P + V
Sbjct: 187 QYLGVWLKPE----GFPHQEIRQYSLTRKP--DGKGYRIAV 221
Score = 29.3 bits (66), Expect = 5.4
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 325 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTV 365
Q+ + L P + R YS++ P + V
Sbjct: 187 QYLGVWLKPE----GFPHQEIRQYSLTRKP--DGKGYRIAV 221
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 5.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 263 QLTPLQPRF--YSISSSP-LAHPNEIHLTV 289
L LQ Y+ S+P LA I T+
Sbjct: 21 ALKKLQASLKLYADDSAPALA----IKATM 46
Score = 28.4 bits (62), Expect = 5.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 339 QLTPLQPRF--YSISSSP-LAHPNEIHLTV 365
L LQ Y+ S+P LA I T+
Sbjct: 21 ALKKLQASLKLYADDSAPALA----IKATM 46
Score = 27.6 bits (60), Expect = 8.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 17/44 (38%)
Query: 184 RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLAT 227
+ +L+ L + L+ +A D L + AT
Sbjct: 19 KQALKKLQAS------------LKLYA-----DDSAPALAIKAT 45
Score = 27.6 bits (60), Expect = 8.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 17/44 (38%)
Query: 504 RASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLAT 547
+ +L+ L + L+ +A D L + AT
Sbjct: 19 KQALKKLQAS------------LKLYA-----DDSAPALAIKAT 45
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 154 PDEPMELQVLSETHTSTEVIKSWKP 178
PD P LQ+ ++ W P
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAP 32
Score = 27.4 bits (61), Expect = 6.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 474 PDEPMELQVLSETHTSTEVIKSWKP 498
PD P LQ+ ++ W P
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAP 32
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 28.4 bits (64), Expect = 7.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 249 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAV 291
Q+ I + P + R YS+S + N ++V
Sbjct: 38 QYIGIEVTPE----GSDYREIRQYSLSHA----SNGREYRISV 72
Score = 28.4 bits (64), Expect = 7.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 325 QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAV 367
Q+ I + P + R YS+S + N ++V
Sbjct: 38 QYIGIEVTPE----GSDYREIRQYSLSHA----SNGREYRISV 72
>1tvl_A Protein YTNJ; beta-alpha barrel, structural genomics, PSI, protein
structu initiative, NEW YORK SGX research center for
structural GEN nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.1.16.4 PDB: 1yw1_A*
Length = 454
Score = 28.8 bits (65), Expect = 7.6
Identities = 7/56 (12%), Positives = 14/56 (25%)
Query: 139 LVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRY 194
++ +L DEP + K + +LR +
Sbjct: 303 YLARFFDDYDLSVYPLDEPFPDIGDVGKNAFQSTTDRIKREAKARNLTLREVAQEM 358
Score = 28.8 bits (65), Expect = 7.6
Identities = 7/56 (12%), Positives = 14/56 (25%)
Query: 459 LVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRY 514
++ +L DEP + K + +LR +
Sbjct: 303 YLARFFDDYDLSVYPLDEPFPDIGDVGKNAFQSTTDRIKREAKARNLTLREVAQEM 358
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 28.7 bits (65), Expect = 8.4
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI 152
VG++ N + I A
Sbjct: 46 YQQSRVGLYIDNSIQSIILIHACWLANIE 74
Score = 28.7 bits (65), Expect = 8.4
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
VG++ N + I A
Sbjct: 46 YQQSRVGLYIDNSIQSIILIHACWLANIE 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,725,211
Number of extensions: 637210
Number of successful extensions: 1455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 99
Length of query: 707
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 607
Effective length of database: 3,909,693
Effective search space: 2373183651
Effective search space used: 2373183651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)