RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15286
(707 letters)
>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 270
Score = 187 bits (476), Expect = 4e-55
Identities = 92/235 (39%), Positives = 144/235 (61%), Gaps = 4/235 (1%)
Query: 64 STVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGIQMRKPHD--C 121
+ R + A L GLS VH ++V L+ + NL + +R+T+ +++ +
Sbjct: 5 NKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNLQSPKS-SRSTIFVRLHTNGNQEL 63
Query: 122 AYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHER 181
Y+PGDH+G+F N DLV+ ++ RL + +++++L E +T+ VI +WK R
Sbjct: 64 QYQPGDHLGVFPGNHEDLVNALIERLEDAP-PANHVVKVEMLEERNTALGVISNWKDESR 122
Query: 182 LPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFP 241
LP ++ YLDITTPP P LQ FA+ AT +++ L +L+ YE+W+ + P
Sbjct: 123 LPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNP 182
Query: 242 HLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRT 296
++EVLE+FPSI +P LL+ QL+ LQPR+YSISSSP +P+E+HLTVA+V+Y T
Sbjct: 183 TMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHT 237
Score = 99.0 bits (246), Expect = 1e-23
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 31/196 (15%)
Query: 358 PNEIHLT-VAVVTYRTQGLSKVHSRKVWQCPLIKKWNLYGSQPVAFAPVTVQFRSDQKDS 416
N+ LT VA TQGLS VH ++V L+ + NL
Sbjct: 4 RNKFRLTYVAEAPDLTQGLSNVHKKRVSAARLLSRQNL---------------------Q 42
Query: 417 SRESDGSQPVARTTLGIQMRKPHD--CAYEPGDHVGIFASNKWDLVSGILARLNLGGIDP 474
S +S R+T+ +++ + Y+PGDH+G+F N DLV+ ++ RL
Sbjct: 43 SPKSS------RSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAP-PA 95
Query: 475 DEPMELQVLSETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFAT 534
+ +++++L E +T+ VI +WK RLP ++ YLDITTPP P LQ FA+ AT
Sbjct: 96 NHVVKVEMLEERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLAT 155
Query: 535 APDDQEILTLLATKMQ 550
+++ L +L+ +Q
Sbjct: 156 NEKEKQRLLVLSKGLQ 171
>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 279
Score = 151 bits (383), Expect = 5e-42
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 18/254 (7%)
Query: 54 QVISSVTLNASTVRFLPMTTADSLVTGLSKVHSRKVWQCPLIKKWNLYGSQPVARTTLGI 113
+++ ++ + V M S ++ + + L +Q R + +
Sbjct: 7 ELVVHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKL--NQGTERHLMHL 64
Query: 114 QMRKPHD-CAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEV 172
++ YE GDHV ++ +N LV+ I L G D D M L L E
Sbjct: 65 ELDISDSKIRYESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE------- 114
Query: 173 IKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSA-- 230
+S K H + RT L+ YLDIT PP +L A +A+ P +QE L +A+ S
Sbjct: 115 -ESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEG 173
Query: 231 --AYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLT 288
Y W H+L +L+ +PS+ P L L LQ R+Y+I+SS HPN +H+
Sbjct: 174 KELYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHIC 233
Query: 289 VAVVTYRTQGASIH 302
V Y + ++
Sbjct: 234 AVAVEYEAKSGRVN 247
Score = 82.5 bits (203), Expect = 5e-18
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 307 AYEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVA 366
Y W H+L +L+ +PS+ P L L LQ R+Y+I+SS HPN +H+
Sbjct: 176 LYLSWVVEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAV 235
Query: 367 VVTYRT 372
V Y
Sbjct: 236 AVEYEA 241
Score = 71.7 bits (175), Expect = 2e-14
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 440 DCAYEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPH 499
YE GDHV ++ +N LV+ I L G D D M L L E +S K H
Sbjct: 72 KIRYESGDHVAVYPANDSALVNQIGEIL---GADLDVIMSLNNLDE--------ESNKKH 120
Query: 500 ERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATK 548
+ RT L+ YLDIT PP +L A +A+ P +QE L +A+
Sbjct: 121 PFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASS 169
>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 221
Score = 110 bits (277), Expect = 3e-28
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 31/176 (17%)
Query: 123 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 182
Y+PGD +G++ N LV ++ L L DEP+ + +
Sbjct: 45 YQPGDALGVWYQNDPALVKELVELLWL---KGDEPV----------------TVEGKTL- 84
Query: 183 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHWRFPH 242
L L + ++T +++ +AT + L +H+
Sbjct: 85 ---PLNEALQWHFELTVNTAN-IVENYATLTRSET-------LLPLVGDKAKLQHYAATT 133
Query: 243 LLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVVTYRTQG 298
+ + +F L L+ L PL PR YSI+SS NE+H+TV VV Y +G
Sbjct: 134 PIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEG 189
Score = 72.1 bits (176), Expect = 8e-15
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 308 YEDWRHWRFPHLLEVLEQFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAV 367
+H+ + + +F L L+ L PL PR YSI+SS NE+H+TV V
Sbjct: 123 KAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGV 182
Query: 368 VTYRTQG 374
V Y +G
Sbjct: 183 VRYDVEG 189
Score = 49.7 bits (118), Expect = 3e-07
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 24/100 (24%)
Query: 443 YEPGDHVGIFASNKWDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKSWKPHERL 502
Y+PGD +G++ N LV ++ L L DEP+ + +
Sbjct: 45 YQPGDALGVWYQNDPALVKELVELLWL---KGDEPV----------------TVEGKTL- 84
Query: 503 PRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEIL 542
L L + ++T +++ +AT + ++
Sbjct: 85 ---PLNEALQWHFELTVNTAN-IVENYATLTRSETLLPLV 120
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 100 bits (249), Expect = 4e-25
Identities = 53/126 (42%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKE- 617
M L FGC+ +D +Y +E + ++ V + + A SREP PK YVQD+++++
Sbjct: 40 MNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDRPKKYVQDVLQEQL 99
Query: 618 ASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
A +YR L ++GGH YVCGD TMA V + ++ + +G L+E++A + RLRD+NRYH
Sbjct: 100 AESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYH 159
Query: 678 EDIFGI 683
EDIFG+
Sbjct: 160 EDIFGV 165
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 95.1 bits (236), Expect = 2e-23
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 560 QELGKMTLFFGCQLKTMD-LYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEA 618
+E+G+ L++GC+ D LY +E ++ LT+ +A SRE K YVQ L+K++
Sbjct: 37 KEVGETLLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQ-AHKVYVQHLLKRDR 95
Query: 619 SMLYRELIKEGGHFYVCGDC-TMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYH 677
L++ + + G H YV GD MA+ V T + G + A + +L + RY
Sbjct: 96 EHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYS 155
Query: 678 EDIF 681
+++
Sbjct: 156 LNVW 159
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 76.8 bits (188), Expect = 4e-17
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 564 KMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYR 623
F LY E + + + VLT+ LA K YVQD ++++
Sbjct: 37 NWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLA-WSRDQKEKVYVQDKLREQG-AELW 94
Query: 624 ELIKEGGHFYVCGDCT-MAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
I +G H YVCGD MA+ V Q L V G + + A++ L LR E RY D++
Sbjct: 95 RWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 71.5 bits (174), Expect = 3e-15
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 563 GKMTLFFGCQLKTMDLYSDEKSKMLDQKVLT-KSFLALSRE---PTIPKTYVQDLMKKEA 618
G LF G + LY +E KM ++ + A+SRE K Y+Q M + A
Sbjct: 42 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYA 101
Query: 619 SMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHE 678
L+ L K+ + Y+CG M + + + + EG + + +L+ +++
Sbjct: 102 VELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEG----IDWIEYKRQLKKAEQWNV 157
Query: 679 DIF 681
+++
Sbjct: 158 EVY 160
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 68.7 bits (167), Expect = 3e-14
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 565 MTLFFGCQLKTMDLYSDEKSKMLDQ-KVLTKSFLALSREPTIPK--TYVQDLMKKEASML 621
LF G LY +E + L Q + ALSRE +E S
Sbjct: 39 AWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDE 98
Query: 622 YRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+L+ G H Y CG M + TLK V + G ++ ++ L +L+ ++H +++
Sbjct: 99 IFKLLDGGAHIYFCGLKGMMPGIQDTLKKVAERRG----ESWDQKLAQLKKNKQWHVEVY 154
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 63.4 bits (153), Expect = 2e-12
Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 550 QNSRVIKFGLQELGKMTLFFGCQLKTMDLYSDEKSKML----DQKVLTKSFLALSREPTI 605
R Q G L FG LY +E ++ D LT + + P
Sbjct: 31 DAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQG 90
Query: 606 PKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEK 665
+ Y+QD + + A L++ + + H Y+CG M E + L EG
Sbjct: 91 GRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEG----VTWSD 146
Query: 666 LLLRLRDENRYHEDI 680
L+ R+H +
Sbjct: 147 YQKDLKKAGRWHVET 161
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 202
Score = 54.5 bits (130), Expect = 5e-09
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLDDDETL 49
+L ELGGER+LK+R GDE+CGQE+AFR+WA +VF AC+ FC+ DD +
Sbjct: 153 LLEELGGERILKMREGDELCGQEEAFRTWAKKVFKAACDVFCVGDDVNI 201
>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Maize (Zea mays), root
isoform [TaxId: 4577]}
Length = 157
Score = 53.1 bits (127), Expect = 7e-09
Identities = 14/73 (19%), Positives = 18/73 (24%), Gaps = 6/73 (8%)
Query: 236 RHWRFPHL--LEVLE-QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHP---NEIHLTV 289
H H + E Q + P P R YSI+S+ L V
Sbjct: 49 CHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV 108
Query: 290 AVVTYRTQGASIH 302
Y
Sbjct: 109 RRAVYYDPETGKE 121
Score = 53.1 bits (127), Expect = 8e-09
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 312 RHWRFPHL--LEVLE-QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHPNEIHLTVAVV 368
H H + E Q + P P R YSI+S+ + V
Sbjct: 49 CHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV 108
Query: 369 TYRT 372
Sbjct: 109 RRAV 112
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 177
Score = 49.3 bits (117), Expect = 2e-07
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 2 LGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETFCLD 44
L +LG +R+ +L GD+ E+ F +W + + CE F ++
Sbjct: 130 LEQLGAQRIFELGLGDDDGNLEEDFITWREQFWPAVCEFFGVE 172
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3
{Bacillus megaterium [TaxId: 1404]}
Length = 152
Score = 40.5 bits (94), Expect = 2e-04
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 1 MLGELGGERLLKLRAGDEMCGQEQAFRSWAPEVFNVACETF 41
L G E + D E + W +++ F
Sbjct: 110 TLAAKGAENIADRGEADASDDFEGTYEEWREHMWSDVAAYF 150
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 33.9 bits (77), Expect = 0.019
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 22/110 (20%)
Query: 281 HPNEIHLTVAVVTYR---------TQGASIHSDSAAYEDWRHWRFPHLLEVLEQFP---- 327
H ++ + V ++ I D A E W + P
Sbjct: 1 HSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVF-----SHEGEIPYREG 55
Query: 328 -SIHLPPALLVAQLTPLQPRFYSISSSPLAHP---NEIHLTVAVVTYRTQ 373
S+ + P P + R YSI+SS L + L V + Y
Sbjct: 56 QSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTND 105
Score = 33.1 bits (75), Expect = 0.033
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 252 SIHLPPALLVAQLTPLQPRFYSISSSPLAHP---NEIHLTVAVVTYRTQGASIH 302
S+ + P P + R YSI+SS L + L V + Y
Sbjct: 57 SVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETI 110
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Cyanobacterium (Anabaena
sp.), pcc 7119 [TaxId: 1167]}
Length = 133
Score = 33.2 bits (75), Expect = 0.032
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 227 TDSAAYEDWRHWRFPHLLEVLE----QFPSIHLPPALLVAQLTPLQPRFYSISSSPLAHP 282
+H +F L+ Q I P + P + R YSI+S+
Sbjct: 24 VKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGK--PEKLRLYSIASTRHGDD 81
Query: 283 NEIHLTVAVVTY 294
+ V
Sbjct: 82 VDDKTISLCVRQ 93
Score = 33.2 bits (75), Expect = 0.040
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 341 TPLQPRFYSISSSPLAHPNEIHLTVAVVTY 370
P + R YSI+S+ + V
Sbjct: 64 KPEKLRLYSIASTRHGDDVDDKTISLCVRQ 93
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 34.6 bits (78), Expect = 0.042
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 5/119 (4%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI----DPDEPM-ELQVLSETHTSTEVIKSWKP 178
+ D V + N + I A LG + P E+ E + I
Sbjct: 73 QQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAY 132
Query: 179 HERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRH 237
R+ R + S+ + + F + L + + A+
Sbjct: 133 SGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSG 191
Score = 31.5 bits (70), Expect = 0.38
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI----DPDEPM-ELQVLSETHTSTEVIKSWKP 498
+ D V + N + I A LG + P E+ E + I
Sbjct: 73 QQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAY 132
Query: 499 HERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDD 538
R+ R + S+ + + F +
Sbjct: 133 SGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE 172
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 142
Score = 32.2 bits (72), Expect = 0.092
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 21/128 (16%)
Query: 564 KMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSR--EPTIPKTYVQDLMKKEASML 621
++ G + + D + F+ + + + +
Sbjct: 34 QVVFVHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQI 93
Query: 622 YRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAEKLLLRLRDENRYHEDIF 681
+ ++ +Y+CG + LK E R H ++F
Sbjct: 94 EKSILLPDADYYICGPIPFMRMQHDALKN------------------LGIHEARIHYEVF 135
Query: 682 GITLRTAE 689
G L AE
Sbjct: 136 GPDL-FAE 142
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 32.2 bits (72), Expect = 0.099
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 563 GKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSR--EPTIPKTYVQDLMKKEASM 620
++ F + + ++DE ++ + + E K + S
Sbjct: 35 AQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSK 94
Query: 621 LYRELIKEGGHFYVCGDCTMAEHVYQTLK 649
L FY+CG + + L
Sbjct: 95 LEGAFSDPTMQFYLCGPVGFMQFTAKQLV 123
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 32.2 bits (72), Expect = 0.22
Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGG----IDPDEPME--LQVLSETHTSTEVIKSWK 177
+ + + N +L L +G + L ++ + + +
Sbjct: 70 NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129
Query: 178 PHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDD 218
+ L ++ + + + + Q TF T+
Sbjct: 130 LQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 170
Score = 32.2 bits (72), Expect = 0.22
Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 6/101 (5%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGG----IDPDEPME--LQVLSETHTSTEVIKSWK 497
+ + + N +L L +G + L ++ + + +
Sbjct: 70 NTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKG 129
Query: 498 PHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDD 538
+ L ++ + + + + Q TF T+
Sbjct: 130 LQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 170
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 29.9 bits (66), Expect = 0.48
Identities = 12/85 (14%), Positives = 24/85 (28%)
Query: 564 KMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFLALSREPTIPKTYVQDLMKKEASMLYR 623
L F Q + L E ++ ++ Y Q + +E +
Sbjct: 49 VCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHL 108
Query: 624 ELIKEGGHFYVCGDCTMAEHVYQTL 648
+E +CG M ++
Sbjct: 109 PPPEEEPLVLMCGPPPMIQYACLPN 133
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 31.0 bits (69), Expect = 0.61
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI 152
VGI DL GILA L GG
Sbjct: 71 GKDTLVGIMMEKSIDLFIGILAVLKAGGA 99
Score = 31.0 bits (69), Expect = 0.61
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
VGI DL GILA L GG
Sbjct: 71 GKDTLVGIMMEKSIDLFIGILAVLKAGGA 99
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 30.2 bits (67), Expect = 0.84
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI 152
GD V N + + A +G +
Sbjct: 63 GVGDRVATLGFNHFRHLEAYFAVPGMGAV 91
Score = 30.2 bits (67), Expect = 0.84
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
GD V N + + A +G +
Sbjct: 63 GVGDRVATLGFNHFRHLEAYFAVPGMGAV 91
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 30.4 bits (67), Expect = 0.93
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI 152
P V + A N D+V ILA LG +
Sbjct: 52 RPQQRVAVVAPNSADVVIAILALHRLGAV 80
Score = 30.4 bits (67), Expect = 0.93
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
P V + A N D+V ILA LG +
Sbjct: 52 RPQQRVAVVAPNSADVVIAILALHRLGAV 80
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays)
[TaxId: 4577]}
Length = 146
Score = 28.0 bits (61), Expect = 2.2
Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 556 KFGLQELGKMTLFFGCQLKTMDLYSDEKSKMLDQKVLTKSFL---ALSREPTIPKTYVQD 612
+ ++ +M L + + + L DE + + + P Y
Sbjct: 36 RDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVG 95
Query: 613 LMKKEASMLYRELIKEGGHFYVCGDCTMAEH-VYQTLK 649
+ + + + CG M + + L+
Sbjct: 96 FVTEAVLREHVPEGGDDTLALACGPPPMIQFAISPNLE 133
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 316
Score = 28.4 bits (62), Expect = 3.0
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 484 SETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILT 543
S S +++ R ++LR L+R D T P AL+ D E L
Sbjct: 249 SVRPLSEAELEALPLLSRG--SALRFFLTRLYDWLTTPAGALV-------VKKDPLEYLR 299
Query: 544 LLATKMQNSRVIKFGL 559
L + V ++GL
Sbjct: 300 KLRFHRTIANVAEYGL 315
Score = 27.2 bits (59), Expect = 6.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 164 SETHTSTEVIKSWKPHERLPRASLRTLLSRYLDITTPPPPALLQ 207
S S +++ R ++LR L+R D T P AL+
Sbjct: 249 SVRPLSEAELEALPLLSRG--SALRFFLTRLYDWLTTPAGALVV 290
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 28.5 bits (63), Expect = 3.2
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 5/120 (4%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGG----IDPD-EPMELQVLSETHTSTEVIKSWKP 178
+ GD V I+ + +LA +G I P + +S VI + +
Sbjct: 126 KKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEG 185
Query: 179 HERLPRASLRTLLSRYLDITTPPPPALLQFFATFATAPDDQEILTLLATDSAAYEDWRHW 238
L+ + L + + D QE L D H
Sbjct: 186 VRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ 245
Score = 28.5 bits (63), Expect = 3.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
+ GD V I+ + +LA +G +
Sbjct: 126 KKGDVVAIYMPMVPEAAVAMLACARIGAV 154
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 27.6 bits (60), Expect = 3.4
Identities = 6/59 (10%), Positives = 16/59 (27%)
Query: 606 PKTYVQDLMKKEASMLYRELIKEGGHFYVCGDCTMAEHVYQTLKYVFQHEGNLTEQNAE 664
T + K + + + +CG +M + + L + +
Sbjct: 90 RLTDLMRSGKLFEDIGLPPINPQDDRAMICGSPSMLDESCEVLDGFGLKISPRMGEPGD 148
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 28.7 bits (63), Expect = 3.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 124 EPGDHVGIFASNKWDLVSGILARLNLGGI 152
GD V ++ + + +LA +G I
Sbjct: 114 RKGDTVAVYMPMVPEAIITLLAISRIGAI 142
Score = 28.7 bits (63), Expect = 3.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 444 EPGDHVGIFASNKWDLVSGILARLNLGGI 472
GD V ++ + + +LA +G I
Sbjct: 114 RKGDTVAVYMPMVPEAIITLLAISRIGAI 142
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 126
Score = 26.9 bits (59), Expect = 3.8
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 12/79 (15%)
Query: 118 PHDCAYEPGDHVGIFASNK--WDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKS 175
P+ C +G + A + +GG + ++ K
Sbjct: 53 PNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHL----------GDIYKK 102
Query: 176 WKPHERLPRASLRTLLSRY 194
P + L L++++
Sbjct: 103 AVPCKDLVPVVAEILINQF 121
Score = 26.9 bits (59), Expect = 3.8
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 12/79 (15%)
Query: 438 PHDCAYEPGDHVGIFASNK--WDLVSGILARLNLGGIDPDEPMELQVLSETHTSTEVIKS 495
P+ C +G + A + +GG + ++ K
Sbjct: 53 PNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHL----------GDIYKK 102
Query: 496 WKPHERLPRASLRTLLSRY 514
P + L L++++
Sbjct: 103 AVPCKDLVPVVAEILINQF 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,604,041
Number of extensions: 120894
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 51
Length of query: 707
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,144,436
Effective search space: 703828140
Effective search space used: 703828140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)