BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15287
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RI5|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358a Point Mutation
Length = 319
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 67 RLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 122
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 123 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMAPS-LV 162
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 163 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 213
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 174 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FXWEKYLEE 230
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 231 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 267
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 268 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 6 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 48
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 49 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSEXHDFWVNANSPDIHPAGWFEKTGHKLQP 105
Query: 173 PASGKR 178
P K
Sbjct: 106 PKGYKE 111
>pdb|2RHU|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Dimethyl-Lysine And In Chimera With Histone
H3.3(28-34)
Length = 329
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 67 RLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 122
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 123 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 162
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 163 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 213
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 174 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FXWEKYLEE 230
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 231 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 267
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVSP 181
VA+V DV R+ IH D G S D+W D I P GWC + L PP G +P
Sbjct: 268 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGGGGSAP 325
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 6 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 48
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 49 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSEXHDFWVNANSPDIHPAGWFEKTGHKLQP 105
Query: 173 PASGKR 178
P K
Sbjct: 106 PKGYKE 111
>pdb|2RHY|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
Bound To Monomethyl-Lysine
Length = 319
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 67 RLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 122
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 123 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 162
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 163 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 213
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 174 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FXWEKYLEE 230
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 231 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 267
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 268 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 6 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 48
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 49 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSEXHDFWVNANSPDIHPAGWFEKTGHKLQP 105
Query: 173 PASGKR 178
P K
Sbjct: 106 PKGYKE 111
>pdb|2RI3|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With N358q Point Mutation
Length = 319
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 67 RLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 122
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 123 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMQPS-LV 162
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 163 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 213
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 174 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FXWEKYLEE 230
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 231 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 267
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 268 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 6 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 48
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 49 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSEXHDFWVNANSPDIHPAGWFEKTGHKLQP 105
Query: 173 PASGKR 178
P K
Sbjct: 106 PKGYKE 111
>pdb|1OYX|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OYX|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Seleno-Met) At 1.85 Angstrom
pdb|1OZ3|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|B Chain B, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
pdb|1OZ3|C Chain C, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-I) At 1.85 Angstrom
Length = 331
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 71 RLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 126
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 127 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGXKLEAVDRXNPS-LV 166
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 167 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 217
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 178 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 234
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 235 TGASAVPTWAFKV----------------------RPPHSFLVNXKLEAVDRRNPA-LIR 271
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVS 180
VA+V DV R+ IH D G S D+W D I P GWC + L PP + S
Sbjct: 272 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPS 328
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 10 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGXKLEGID 52
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S F + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 53 PQHPSXYF-ILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 109
Query: 173 PASGKR 178
P K
Sbjct: 110 PKGYKE 115
>pdb|3OQ5|A Chain A, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|B Chain B, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
pdb|3OQ5|C Chain C, Crystal Structure Of The 3-Mbt Domain From Human L3mbtl1
In Complex With P53k382me1
Length = 345
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 82 RLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 137
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 138 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 177
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 178 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 228
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 189 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 245
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 246 TGASAVPTWAFKV----------------------RPPHSFLVNMKLEAVDRRNPA-LIR 282
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVS 180
VA+V DV R+ IH D G S D+W D I P GWC + L PP + S
Sbjct: 283 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPS 339
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 21 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 63
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 64 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 120
Query: 173 PASGKR 178
P K
Sbjct: 121 PKGYKE 126
>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1
In Complex With H1.5k27me2 At 1.66 Angstrom
pdb|2RHX|A Chain A, Crystal Structure Of The 3-mbt Repeats From Human L3mbtl1
Bound To Dimethyl-lysine
Length = 345
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 76 RLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 131
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 132 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 171
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 172 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 222
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 183 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 239
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 240 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 276
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVS 180
VA+V DV R+ IH D G S D+W D I P GWC + L PP + S
Sbjct: 277 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPS 333
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 15 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 57
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 58 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 114
Query: 173 PASGKR 178
P K
Sbjct: 115 PKGYKE 120
>pdb|1OZ2|A Chain A, Crystal Structure Of 3-Mbt Repeats Of Lethal (3) Malignant
Brain Tumor (Native-Ii) At 1.55 Angstrom
Length = 331
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 71 RLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 126
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 127 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 166
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 167 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 217
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 178 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 234
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 235 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 271
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVS 180
VA+V DV R+ IH D G S D+W D I P GWC + L PP + S
Sbjct: 272 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPS 328
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 10 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 52
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 53 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 109
Query: 173 PASGKR 178
P K
Sbjct: 110 PKGYKE 115
>pdb|2RJC|A Chain A, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|B Chain B, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJC|C Chain C, Crystal Structure Of L3mbtl1 Protein In Complex With Mes
pdb|2RJD|A Chain A, Crystal Structure Of L3mbtl1 Protein
pdb|2RJE|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|B Chain B, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJE|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17-25), Orthorhombic Form Ii
pdb|2RJF|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|C Chain C, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|2RJF|E Chain E, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 12- 30), Orthorhombic Form I
pdb|3UWN|A Chain A, The 3-Mbt Repeat Domain Of L3mbtl1 In Complex With A
Methyl-Lysine Mimic
Length = 331
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 68 RLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 123
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 124 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 163
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 164 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 214
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 175 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 231
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 232 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 268
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVS 180
VA+V DV R+ IH D G S D+W D I P GWC + L PP + S
Sbjct: 269 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPS 325
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 7 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 49
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 50 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 106
Query: 173 PASGKR 178
P K
Sbjct: 107 PKGYKE 112
>pdb|2PQW|A Chain A, Crystal Structure Of L3mbtl1 In Complex With H4k20me2
(Residues 17- 25), Trigonal Form
pdb|3P8H|A Chain A, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|B Chain B, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
pdb|3P8H|C Chain C, Crystal Structure Of L3mbtl1 (Mbt Repeat) In Complex With
A Nicotinamide Antagonist
Length = 323
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 68 RLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 123
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+D+ S L
Sbjct: 124 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVDRMNPS-LV 163
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 164 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 214
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 175 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 231
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 232 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 268
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 269 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 318
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 7 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 49
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 50 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 106
Query: 173 PASGKR 178
P K
Sbjct: 107 PKGYKE 112
>pdb|2RHZ|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355n Point Mutation
Length = 319
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 91/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 67 RLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 122
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+++ S L
Sbjct: 123 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVNRMNPS-LV 162
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 163 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 213
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 174 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FXWEKYLEE 230
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 231 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 267
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 268 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 6 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 48
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 49 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSEXHDFWVNANSPDIHPAGWFEKTGHKLQP 105
Query: 173 PASGKR 178
P K
Sbjct: 106 PKGYKE 111
>pdb|2RI2|A Chain A, Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1
With D355a Point Mutation
Length = 319
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 90/173 (52%), Gaps = 27/173 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RLHFDGY + DFWVN N PD++P GW ++ PP FSW +YL
Sbjct: 67 RLRLHFDGYSEXHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE----FSWSQYLRS 122
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV-FKIGRKLEAIDKKGGSNLF 120
T++ AAP H F S SH PP + F++G KLEA+ + S L
Sbjct: 123 TRAQAAPKHLFVS-------------------QSHSPPPLGFQVGMKLEAVARMNPS-LV 162
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D+ D DYW D S YI PVGWC++ L PP
Sbjct: 163 CVASVTDVVDSRFLVHFDNW--DDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 213
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 174 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FXWEKYLEE 230
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ + L
Sbjct: 231 TGASAVPTWAFKVR----------------------PPHSFLVNMKLEAVDRRNPA-LIR 267
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 268 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 317
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + FK+G KLE ID
Sbjct: 6 WSWESYLEEQKAITAPVSLFQDSQAVTHNKNG-----------------FKLGMKLEGID 48
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ S ++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 49 PQHPS-MYFILTVAEVCGYRLRLHFD--GYSEXHDFWVNANSPDIHPAGWFEKTGHKLQP 105
Query: 173 PASGKR 178
P K
Sbjct: 106 PKGYKE 111
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 25/172 (14%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
RI+LHFDGY D +DFWVN + D++P GW +++PP F+W YL
Sbjct: 66 RIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEE----FNWQTYLKT 121
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
K+ AAP F + + + + PS F++G KLEA+DKK S
Sbjct: 122 CKAQAAPKSLFENQNIT------------------VIPSGFRVGMKLEAVDKKNPS-FIC 162
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VATV D++ R +H D+ S DYW + S +I PVGWC+ ++ L+ P
Sbjct: 163 VATVTDMVDNRFLVHFDNWDES--YDYWCEASSPHIHPVGWCKEHRRTLITP 212
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + + +D+W + P ++P GW R + P PN+++ FSW KYL
Sbjct: 173 RFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKH---FSWDKYLEE 229
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T S+ AP F PP F+ KLE +DK+
Sbjct: 230 TNSLPAPARAFKVK----------------------PPHGFQKKMKLEVVDKR-NPMFIR 266
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
VATV D R+ +H D G ++ DYW D S I PVGWC + L PP S
Sbjct: 267 VATVADTDDHRVKVHFD--GWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLS 318
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 55 WGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKK 114
W YL K++A P F S Y + FK+G KLE +D +
Sbjct: 7 WASYLEEEKAVAVPAKLFKEHQSFPYNK-----------------NGFKVGMKLEGVDPE 49
Query: 115 GGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPA 174
S ++ V TV +V G R+ +H D G SD D+W + + I PVGWC + KL PP
Sbjct: 50 HQS-VYCVLTVAEVCGYRIKLHFD--GYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPK 106
Query: 175 SGKR 178
K
Sbjct: 107 GYKE 110
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 25/172 (14%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
RI+LHFDGY D +DFWVN + D++P GW +++PP F+W YL
Sbjct: 66 RIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEE----FNWQTYLKT 121
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
K+ AAP F + + + + PS F++G KLEA+DKK S
Sbjct: 122 CKAQAAPKSLFENQNIT------------------VIPSGFRVGMKLEAVDKKNPS-FIC 162
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VATV D++ R +H D+ S DYW + S +I PVGWC+ ++ L+ P
Sbjct: 163 VATVTDMVDNRFLVHFDNWDES--YDYWCEASSPHIHPVGWCKEHRRTLITP 212
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + + +D+W + P ++P GW R + P PN+++ FSW KYL
Sbjct: 173 RFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKH---FSWDKYLEE 229
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T S+ AP F PP F+ KLE +DK+
Sbjct: 230 TNSLPAPARAFKVK----------------------PPHGFQKKMKLEVVDKR-NPMFIR 266
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
VATV D R+ +H D G ++ DYW D S I PVGWC + L PP S
Sbjct: 267 VATVADTDDHRVKVHFD--GWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLS 318
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 55 WGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKK 114
W YL K++A P F S Y FK+G KLE +D +
Sbjct: 7 WASYLEEEKAVAVPAKLFKEHQSFPYNKNG-----------------FKVGMKLEGVDPE 49
Query: 115 GGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPA 174
S ++ V TV +V G R+ +H D G SD D+W + + I PVGWC + KL PP
Sbjct: 50 HQS-VYCVLTVAEVCGYRIKLHFD--GYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPK 106
Query: 175 SGKR 178
K
Sbjct: 107 GYKE 110
>pdb|1OI1|A Chain A, Crystal Structure Of The Mbt Domains Of Human Scml2
pdb|2VYT|A Chain A, The Mbt Repeats Of Human Scml2 Bind To Peptides Containing
Mono Methylated Lysine.
pdb|2VYT|B Chain B, The Mbt Repeats Of Human Scml2 Bind To Peptides Containing
Mono Methylated Lysine
Length = 221
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL DG +R DFW + PD+ P G + PP NT+ SW +L
Sbjct: 70 RLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGY--QMNTS--SWPMFLLE 125
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T S + +P P + FK+G KLEAIDKK L
Sbjct: 126 T---------LNGSEMASATLFKKEP-------PKPPLNNFKVGMKLEAIDKKN-PYLIC 168
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
AT+ DV G +HI D G S DYW S I P GWCR L PP +
Sbjct: 169 PATIGDVKGDEVHITFD--GWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 220
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 24/122 (19%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPP-SVFKIGRKLEAI 111
F W +YL T S++AP S CF S +PP + FK+G KLEA
Sbjct: 11 FHWEEYLKETGSISAP--------------------SECFRQSQIPPVNDFKVGMKLEAR 50
Query: 112 DKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLV 171
D + +++ +ATV + G RL + +D GS +R D+W + S I+PVG C + L
Sbjct: 51 DPRNATSVC-IATVIGITGARLRLRLD--GSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQ 107
Query: 172 PP 173
PP
Sbjct: 108 PP 109
>pdb|4EDU|A Chain A, The Mbt Repeats Of Human Scml2 In A Complex With Histone
H2a Peptide
Length = 215
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL DG +R DFW + PD+ P G + PP NT+ SW +L
Sbjct: 64 RLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGY--QMNTS--SWPMFLLE 119
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T S + +P P + FK+G KLEAIDKK L
Sbjct: 120 T---------LNGSEMASATLFKKEP-------PKPPLNNFKVGMKLEAIDKKN-PYLIC 162
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
AT+ DV G +HI D G S DYW S I P GWCR L PP +
Sbjct: 163 PATIGDVKGDEVHITFD--GWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 214
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 27/138 (19%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPP-SVFKIGRKLEAI 111
F W +YL T S++AP S CF S +PP + FK+G KLEA
Sbjct: 5 FHWEEYLKETGSISAP--------------------SECFRQSQIPPVNDFKVGMKLEAR 44
Query: 112 DKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLV 171
D + +++ +ATV + G RL + +D GS +R D+W + S I+PVG C + L
Sbjct: 45 DPRNATSVC-IATVIGITGARLRLRLD--GSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQ 101
Query: 172 PPASGKRVS---PLFFIS 186
PP + + P+F +
Sbjct: 102 PPLGYQMNTSSWPMFLLE 119
>pdb|2BIV|A Chain A, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
pdb|2BIV|B Chain B, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
pdb|2BIV|C Chain C, Crystal Structure Of The Wild-Type Mbt Domains Of Human
Scml2
Length = 243
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL DG +R DFW + PD+ P G + PP NT+ SW +L
Sbjct: 92 RLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGY--QMNTS--SWPMFLLK 147
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T S + +P P + FK+G KLEAIDKK L
Sbjct: 148 T---------LNGSEMASATLFKKEP-------PKPPLNNFKVGMKLEAIDKKN-PYLIC 190
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
AT+ DV G +HI D G S DYW S I P GWCR L PP +
Sbjct: 191 PATIGDVKGDEVHITFD--GWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 242
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 25/140 (17%)
Query: 35 HRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTS 94
++ P +ST +++ F W +YL T S++AP S CF
Sbjct: 16 NQEKTPQSSTSSVQRDD-FHWEEYLKETGSISAP--------------------SECFRQ 54
Query: 95 SHMPP-SVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIG 153
S +PP + FK+G KLEA D + +++ +ATV + G RL + +D GS +R D+W +
Sbjct: 55 SQIPPVNDFKVGMKLEARDPRNATSVC-IATVIGITGARLRLRLD--GSDNRNDFWRLVD 111
Query: 154 SAYIRPVGWCRRNKVKLVPP 173
S I+PVG C + L PP
Sbjct: 112 SPDIQPVGTCEKEGDLLQPP 131
>pdb|2P0K|A Chain A, Crystal Structure Of Scmh1
Length = 212
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 27/137 (19%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
F+W KYL T S+ AP HCF S++ P + FKI KLEA D
Sbjct: 2 FTWDKYLKETCSVPAPVHCFKQSYTP-------------------PSNEFKISMKLEAQD 42
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ ++ +ATV + G RL + +D GS ++ D+W + SA I+P+G C +N L P
Sbjct: 43 PRNTTSTC-IATVVGLTGARLRLRLD--GSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQP 99
Query: 173 PASGKRVS----PLFFI 185
P G R++ P+F +
Sbjct: 100 PL-GFRLNASSWPMFLL 115
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL DG ++ DFW + ++ P G + PP R A SW +L
Sbjct: 61 RLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLG---FRLNA-SSWPMFLLK 116
Query: 62 TKSMA--APPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNL 119
T + A AP F S SH F FK+G KLEA+D+K +
Sbjct: 117 TLNGAEMAPIRIFHKEPPSP---------SHNF---------FKMGMKLEAVDRKN-PHF 157
Query: 120 FHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
AT+ +V G+ + + D G DYW S I PVGWC L PP +
Sbjct: 158 ICPATIGEVRGSEVLVTFD--GWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGT 211
>pdb|2R57|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm)
pdb|2R58|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Di-Methyl Lysine
pdb|2R5A|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Methyl Lysine
pdb|2R5M|A Chain A, Crystal Structure Of The Two Mbt Repeats From Sex-Comb On
Midleg (Scm) In Complex With Peptide R-(Me)k-S
Length = 265
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
F W YL T S AAP CF + + P + FKIG KLEA+D
Sbjct: 5 FDWDAYLEETGSEAAPAKCFKQAQNP-------------------PNNDFKIGMKLEALD 45
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ ++ +ATV V+G+RL + +D GS + D+W + S I +G C +N L P
Sbjct: 46 PRNVTSTC-IATVVGVLGSRLRLRLD--GSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQP 102
Query: 173 P 173
P
Sbjct: 103 P 103
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 100 SVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRP 159
++FK+G+KLEA+DKK L ATV + ++H+ D G DYW + S I P
Sbjct: 142 NLFKVGQKLEAVDKKN-PQLICCATVDAIKDDQIHVTFD--GWRGAFDYWCNYRSRDIFP 198
Query: 160 VGWCRRNKVKLVPPASGKRV 179
GWC R+ + PP R+
Sbjct: 199 AGWCARSCHPMQPPGHKSRM 218
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTA 51
+I + FDG+ FD+W N D++P GW A + PP M +++
Sbjct: 173 QIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSS 222
>pdb|3CEY|A Chain A, Crystal Structure Of L3mbtl2
pdb|3CEY|B Chain B, Crystal Structure Of L3mbtl2
Length = 474
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 61/151 (40%), Gaps = 24/151 (15%)
Query: 32 ANFHRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHC 91
A F ++ + P F+W YL TKS AAP F
Sbjct: 336 ATFCQKNDIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMD---------------- 379
Query: 92 FTSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTD 151
P FK+G KLEA+D L VATV+ V+ L IH D G D W D
Sbjct: 380 -----CPNHGFKVGMKLEAVDLME-PRLICVATVKRVVHRLLSIHFD--GWDSEYDQWVD 431
Query: 152 IGSAYIRPVGWCRRNKVKLVPPASGKRVSPL 182
S I PVGWC +L PP + + +PL
Sbjct: 432 CESPDIYPVGWCELTGYQLQPPVAAEPATPL 462
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 2 RIRLHFDGYPD--RFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSW-GKY 58
R+ L ++G+ + DFW N D++P GW A + +I P T + + T W + K
Sbjct: 91 RVLLRYEGFENDASHDFWCNLGTVDVHPIGWCA-INSKILVPPRTIHAKFTDWKGYLMKR 149
Query: 59 LHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
L ++++ H S KY F+ G +LE +DK S
Sbjct: 150 LVGSRTLPVDFH-IKMVESMKY--------------------PFRQGMRLEVVDKSQVSR 188
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRR 165
+A V VIG RL + + S D D+W + S I PVGW RR
Sbjct: 189 T-RMAVVDTVIGGRLRLLYEDGDSDD--DFWCHMWSPLIHPVGWSRR 232
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMP-----PSVFKIGRK 107
F WGK+L AAP CF H+P V K G K
Sbjct: 28 FDWGKFLKDHSYKAAPVSCF----------------------KHVPLYDQWEDVMK-GMK 64
Query: 108 LEAIDKKGG--SNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRR 165
+E ++ S ++ +A+V G R+ + + + D+W ++G+ + P+GWC
Sbjct: 65 VEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAI 124
Query: 166 NKVKLVPP 173
N LVPP
Sbjct: 125 NSKILVPP 132
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 3 IRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPAST 44
+ +HFDG+ +D WV+C PD+YP GW ++ PP +
Sbjct: 415 LSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPVAA 456
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 25/173 (14%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL ++ DFW + P ++P GW+ I +M + F
Sbjct: 201 RLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGHGIKMSERRSDMAHHPTFR------- 253
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
A P+ F K A T+ G F+ G KLEAID N+
Sbjct: 254 KIYCDAVPYLF-----KKVRAVYTEGGW------------FEEGMKLEAIDPLNLGNICV 296
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAY-IRPVGWCRRNKVKLVPP 173
+ ++ L I +D S+D +D++ S++ I P +C++N ++L PP
Sbjct: 297 ATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPP 349
>pdb|3F70|A Chain A, Crystal Structure Of L3mbtl2-H4k20me1 Complex
pdb|3F70|B Chain B, Crystal Structure Of L3mbtl2-H4k20me1 Complex
Length = 456
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 61/151 (40%), Gaps = 24/151 (15%)
Query: 32 ANFHRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHC 91
A F ++ + P F+W YL TKS AAP F
Sbjct: 318 ATFCQKNDIELTPPKGYEAQTFNWENYLEKTKSKAAPSRLFNMD---------------- 361
Query: 92 FTSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTD 151
P FK+G KLEA+D L VATV+ V+ L IH D G D W D
Sbjct: 362 -----CPNHGFKVGMKLEAVDLME-PRLICVATVKRVVHRLLSIHFD--GWDSEYDQWVD 413
Query: 152 IGSAYIRPVGWCRRNKVKLVPPASGKRVSPL 182
S I PVGWC +L PP + + +PL
Sbjct: 414 CESPDIYPVGWCELTGYQLQPPVAAEPATPL 444
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 2 RIRLHFDGYPD--RFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSW-GKY 58
R+ L ++G+ + DFW N D++P GW A + +I P T + + T W + K
Sbjct: 73 RVLLRYEGFENDASHDFWCNLGTVDVHPIGWCA-INSKILVPPRTIHAKFTDWKGYLMKR 131
Query: 59 LHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
L ++++ H S KY F+ G +LE +DK S
Sbjct: 132 LVGSRTLPVDFH-IKMVESMKY--------------------PFRQGMRLEVVDKSQVSR 170
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRR 165
+A V VIG RL + + S D D+W + S I PVGW RR
Sbjct: 171 T-RMAVVDTVIGGRLRLLYEDGDSDD--DFWCHMWSPLIHPVGWSRR 214
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 30/128 (23%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMP-----PSVFKIGRK 107
F WGK+L AAP CF H+P V K G K
Sbjct: 10 FDWGKFLKDHSYKAAPVSCF----------------------KHVPLYDQWEDVMK-GMK 46
Query: 108 LEAIDKKGG--SNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRR 165
+E ++ S ++ +A+V G R+ + + + D+W ++G+ + P+GWC
Sbjct: 47 VEVLNSDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAI 106
Query: 166 NKVKLVPP 173
N LVPP
Sbjct: 107 NSKILVPP 114
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 3 IRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPAST 44
+ +HFDG+ +D WV+C PD+YP GW ++ PP +
Sbjct: 397 LSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPVAA 438
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 25/173 (14%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL ++ DFW + P ++P GW+ I +M + F
Sbjct: 183 RLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGHGIKMSERRSDMAHHPTFR------- 235
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
A P+ F K A T+ G F+ G KLEAID N+
Sbjct: 236 KIYCDAVPYLF-----KKVRAVYTEGGW------------FEEGMKLEAIDPLNLGNICV 278
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAY-IRPVGWCRRNKVKLVPP 173
+ ++ L I +D S+D +D++ S++ I P +C++N ++L PP
Sbjct: 279 ATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPP 331
>pdb|1WJS|A Chain A, Solution Structure Of The First Mbt Domain From Human
Kiaa1798 Protein
Length = 127
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
RI+LHFDGY D +DFWVN + D++P GW +++PP F+W YL
Sbjct: 43 RIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEE----FNWQTYLKT 98
Query: 62 TKSMAAPPHCFTSSH 76
K+ AAP F + +
Sbjct: 99 CKAQAAPKSLFENQN 113
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 102 FKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVG 161
FK+G KLE +D + S ++ V TV +V G R+ +H D G SD D+W + + I PVG
Sbjct: 14 FKVGMKLEGVDPEHQS-VYCVLTVAEVCGYRIKLHFD--GYSDCYDFWVNADALDIHPVG 70
Query: 162 WCRRNKVKLVPPASGKR 178
WC + KL PP K
Sbjct: 71 WCEKTGHKLHPPKGYKE 87
>pdb|3FEO|A Chain A, The Crystal Structure Of Mbtd1
pdb|3FEO|B Chain B, The Crystal Structure Of Mbtd1
Length = 437
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 16 FWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSS 75
F + P ++P G+ + PP + F W YL T S+AAP F
Sbjct: 302 FCYHATSPSIFPVGFCEINMIELTPPRGYTKLP----FKWFDYLRETGSIAAPVKLFNKD 357
Query: 76 HSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHI 135
+P F++G KLEA+D L VATV +I L I
Sbjct: 358 ---------------------VPNHGFRVGMKLEAVDLME-PRLICVATVTRIIHRLLRI 395
Query: 136 HIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
H D G + D W D S + PVGWC+ +L PPAS
Sbjct: 396 HFD--GWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPAS 433
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 3 IRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPAS 43
+R+HFDG+ + +D WV+C PDLYP GW ++ PPAS
Sbjct: 393 LRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPAS 433
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 43/179 (24%)
Query: 2 RIRLHFDGYPDRFD-FWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLH 60
R+RL ++ DR D FW + + P ++ GW+ + R K
Sbjct: 185 RLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRF------------------KRSD 226
Query: 61 VTKSMAA----PPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGG 116
+TK PPH F Q G FK G KLEAID
Sbjct: 227 ITKKQDGHFDTPPHLFAKVKE------VDQSGEW-----------FKEGMKLEAIDPLNL 269
Query: 117 SNLFHVATVRDVIGTR-LHIHIDSAGSSDRMDYWT-DIGSAYIRPVGWCRRNKVKLVPP 173
S + VAT+R V+ L I ID + ++D D++ S I PVG+C N ++L PP
Sbjct: 270 STIC-VATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPP 327
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 31/165 (18%)
Query: 5 LHFDGYPDR--FDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYL--H 60
L ++G+ + DFW N D++P GW A + + PP + + + +W +L
Sbjct: 78 LRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQH----KYTNWKAFLVKR 133
Query: 61 VTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLF 120
+T + PP S K P FK ++E +DK+
Sbjct: 134 LTGAKTLPP-----DFSQKVSESMQYP--------------FKPCMRVEVVDKRHLCRT- 173
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRM-DYWTDIGSAYIRPVGWCR 164
VA V VIG RL + + S DR D+W + S I +GW R
Sbjct: 174 RVAVVESVIGGRLRLVYEE--SEDRTDDFWCHMHSPLIHHIGWSR 216
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query: 42 ASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSV 101
A T + FSWG Y++ +AAP CF + P C+ V
Sbjct: 1 AKTKAAVSMEGFSWGNYINSNSFIAAPVTCFKHA-----------PMGTCWGDISENVRV 49
Query: 102 FKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVG 161
++ D + +F +A + + G + + + +D+W +I + I PVG
Sbjct: 50 -----EVPNTDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVG 104
Query: 162 WCRRNKVKLVPP 173
WC + LVPP
Sbjct: 105 WCAASGKPLVPP 116
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 24/147 (16%)
Query: 27 PCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQ 86
PC + A F + PN ++ F+W YL T ++AA H F
Sbjct: 323 PCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLSDTGAVAAGQHLF-------------- 368
Query: 87 PGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRM 146
+P F++G LE D L VATV V+G L +H D G +D
Sbjct: 369 -------HDIIPDHGFEVGMSLECADLMD-PRLVCVATVARVVGRLLKVHFD--GWTDEY 418
Query: 147 DYWTDIGSAYIRPVGWCRRNKVKLVPP 173
D W D SA I PVGWC KL P
Sbjct: 419 DQWLDCESADIYPVGWCVLVNHKLEGP 445
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 2 RIRLHFDGY-PDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLH 60
+ + ++G+ D DFWVN + +++ GW A + + PP + + + W +L
Sbjct: 77 KALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEH----KYKDWKDFL- 131
Query: 61 VTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLF 120
+ T P + + S F++G LE +DK S +
Sbjct: 132 ----------------VGRLSGARTLPSNFYNKINDSLQSRFRLGLNLECVDKDRISQV- 174
Query: 121 HVATVRDVIGTRLHI-HIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
+ATV ++G RL + + DS +W S I PVGW L P
Sbjct: 175 RLATVTKIVGDRLFLRYFDSDDG-----FWCHEDSPIIHPVGWATTVGHNLAAP 223
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 3 IRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPP 41
+++HFDG+ D +D W++C D+YP GW + ++ P
Sbjct: 407 LKVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEGP 445
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 108 LEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNK 167
+E I F VAT+ ++ G + + + +D D+W ++ +A + VGWC
Sbjct: 53 IEVIQPGQTPTSFWVATILEIKGYKALMSYEGF-DTDSHDFWVNLCNAEVHSVGWCATRG 111
Query: 168 VKLVPP 173
L+PP
Sbjct: 112 KPLIPP 117
>pdb|1WJQ|A Chain A, Solution Structure Of The Third Mbt Domain From Human
Kiaa1798 Protein
Length = 107
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 93 TSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDI 152
+S PP F+ KLE +DK+ VATV D R+ +H D G ++ DYW D
Sbjct: 5 SSGVKPPHGFQKKMKLEVVDKRN-PMFIRVATVADTDDHRVKVHFD--GWNNCYDYWIDA 61
Query: 153 GSAYIRPVGWCRRNKVKLVPPAS 175
S I PVGWC + L PP S
Sbjct: 62 DSPDIHPVGWCSKTGHPLQPPLS 84
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPAS 43
R+++HFDG+ + +D+W++ + PD++P GW + + PP S
Sbjct: 43 RVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLS 84
>pdb|1WJR|A Chain A, Solution Structure Of The 2nd Mbt Domain From Human
Kiaa1617 Protein
Length = 127
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 93 TSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDI 152
+ S P + +G +E D + + V+ + +V G RL + ++ D W
Sbjct: 3 SGSSGPIDLITVGSLIELQDSQNPFQYWIVSVIENV-GGRLRLRYVGLEDTESYDQWLFY 61
Query: 153 GSAYIRPVGWCRRNKVKLVPPAS 175
+RPVGWC+ NK ++ PP+
Sbjct: 62 LDYRLRPVGWCQENKYRMDPPSE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,266,059
Number of Sequences: 62578
Number of extensions: 246627
Number of successful extensions: 946
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 100
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)