RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15287
(186 letters)
>gnl|CDD|214723 smart00561, MBT, Present in Drosophila Scm, l(3)mbt, and vertebrate
SCML2. Present in Drosophila Scm, l(3)mbt, and
vertebrate SCML2. These proteins are involved in
transcriptional regulation.
Length = 96
Score = 90.4 bits (225), Expect = 4e-24
Identities = 45/117 (38%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 57 KYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGG 116
YL T + AAP F S PP+ FK+G KLEA+D +
Sbjct: 2 DYLEETGARAAPVELFKQPVDS-------------------PPNGFKVGMKLEAVDPRNP 42
Query: 117 SNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
S L VATV +V G RL +H D G D+ D+W S I PVGWC +N L PP
Sbjct: 43 S-LICVATVVEVKGYRLLLHFD--GWDDKYDFWCHADSPDIFPVGWCEKNGHPLQPP 96
Score = 55.3 bits (134), Expect = 1e-10
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPP 41
R+ LHFDG+ D++DFW + + PD++P GW + PP
Sbjct: 57 RLLLHFDGWDDKYDFWCHADSPDIFPVGWCEKNGHPLQPP 96
>gnl|CDD|202414 pfam02820, MBT, mbt repeat. The function of this repeat is
unknown, but is found in a number of nuclear proteins
such as drosophila sex comb on midleg protein. The
repeat is found in up to four copies. The repeat
contains a completely conserved glutamate at its amino
terminus that may be important for function.
Length = 73
Score = 66.6 bits (163), Expect = 3e-15
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 107 KLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRN 166
KLEA+D + +L ATV V G RL + D G D+W + S I PVGWC +N
Sbjct: 2 KLEAVDPRN-PSLICPATVVTVRGYRLRLRFD--GWDSDYDFWCHVDSPDIHPVGWCEKN 58
Query: 167 KVKLVPP 173
L PP
Sbjct: 59 GHVLQPP 65
Score = 53.5 bits (129), Expect = 3e-10
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGW 30
R+RL FDG+ +DFW + + PD++P GW
Sbjct: 26 RLRLRFDGWDSDYDFWCHVDSPDIHPVGW 54
>gnl|CDD|152075 pfam11639, HapK, REDY-like protein HapK. This family of proteins
represents HapK, a protein of unknown function, with
two homologues PigK and RedY. The monomer structure of
the protein contains a four-stranded anti parallel
beta-sheet, three alpha-helices and a short C terminal
tail which it uses for dimer formation. The surface of
HapK has a deep cavity with consists of a kinked helix
and a beta-four strand. HapK could be involved in
prodigiosin biosynthesis, specifically the binding of a
bipyrrole intermediate such as HBM or MBM.
Length = 103
Score = 27.5 bits (61), Expect = 1.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 2 RIRLHFDGYPDRFDFWV 18
+IRL + F+ WV
Sbjct: 6 KIRLKDIAHAAAFEDWV 22
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 28.4 bits (63), Expect = 1.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 15 DFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTA 51
DF NH P W+ +H+RI PP + PN+ A
Sbjct: 244 DFLEIKNHVFFSPINWDDLYHKRITPPYN-PNVAGPA 279
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and
degradation [Intracellular trafficking and secretion].
Length = 776
Score = 27.6 bits (61), Expect = 4.9
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 16 FWVNCNHPDLY--PCGWNANFHRRIYPPASTPNMRNTAWFSWGK 57
F + N P+L P G + P A+ + N A S K
Sbjct: 7 FMESGNKPELITIPSGQFNLLRSKNSPKAALECIYNNATLSVRK 50
>gnl|CDD|226732 COG4282, SMI1, Protein involved in beta-1,3-glucan synthesis
[Carbohydrate transport and metabolism].
Length = 191
Score = 26.8 bits (59), Expect = 6.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 13 RFDFWVNCNHPDLYP 27
R D WV +HPDL P
Sbjct: 13 RIDTWVAEHHPDLLP 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.481
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,572,643
Number of extensions: 817393
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 16
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)