RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15287
(186 letters)
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin
modification, transcription repression, MBT repeat
structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB:
4fl6_A* 1wjs_A
Length = 324
Score = 137 bits (347), Expect = 3e-40
Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 25/181 (13%)
Query: 1 PRIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLH 60
RI+LHFDGY D +DFWVN + D++P GW +++PP F+W YL
Sbjct: 65 YRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEE----EFNWQTYLK 120
Query: 61 VTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLF 120
K+ AAP F + + + + PS F++G KLEA+DKK +
Sbjct: 121 TCKAQAAPKSLFENQNIT------------------VIPSGFRVGMKLEAVDKK-NPSFI 161
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKRVS 180
VATV D++ R +H D + DYW + S +I PVGWC+ ++ L+ P V
Sbjct: 162 CVATVTDMVDNRFLVHFD--NWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVK 219
Query: 181 P 181
Sbjct: 220 H 220
Score = 136 bits (343), Expect = 1e-39
Identities = 57/174 (32%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + + +D+W + P ++P GW R + P PN+++ FSW KYL
Sbjct: 173 RFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKH---FSWDKYLEE 229
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T S+ AP F PP F+ KLE +DK+
Sbjct: 230 TNSLPAPARAF----------------------KVKPPHGFQKKMKLEVVDKR-NPMFIR 266
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
VATV D R+ +H D G ++ DYW D S I PVGWC + L PP S
Sbjct: 267 VATVADTDDHRVKVHFD--GWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLS 318
Score = 94.7 bits (235), Expect = 9e-24
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+ W YL K++A P F S Y + FK+G KLE +D
Sbjct: 5 WCWASYLEEEKAVAVPAKLFKEHQSFPY-----------------NKNGFKVGMKLEGVD 47
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ +++ V TV +V G R+ +H D G SD D+W + + I PVGWC + KL P
Sbjct: 48 PE-HQSVYCVLTVAEVCGYRIKLHFD--GYSDCYDFWVNADALDIHPVGWCEKTGHKLHP 104
Query: 173 PASGKR 178
P K
Sbjct: 105 PKGYKE 110
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant
brain tumor, transcription factor; 1.7A {Homo sapiens}
SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Length = 243
Score = 125 bits (316), Expect = 2e-36
Identities = 58/177 (32%), Positives = 69/177 (38%), Gaps = 27/177 (15%)
Query: 1 PRIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLH 60
R+RL DG +R DFW + PD+ P G + PP SW +L
Sbjct: 91 ARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNT----SSWPMFLL 146
Query: 61 VT--KSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
T S A F P + FK+G KLEAIDKK
Sbjct: 147 KTLNGSEMASATLFKK------------------EPPKPPLNNFKVGMKLEAIDKK-NPY 187
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
L AT+ DV G +HI D G S DYW S I P GWCR L PP +
Sbjct: 188 LICPATIGDVKGDEVHITFD--GWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGT 242
Score = 112 bits (282), Expect = 2e-31
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 17 WVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSH 76
VN + D+ P S+ + F W +YL T S++AP CF S
Sbjct: 4 TVNEDSMDVKKENQEK-------TPQSSTSSVQRDDFHWEEYLKETGSISAPSECFRQSQ 56
Query: 77 SSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIH 136
P + FK+G KLEA D + + +ATV + G RL +
Sbjct: 57 IP-------------------PVNDFKVGMKLEARDPR-NATSVCIATVIGITGARLRLR 96
Query: 137 IDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPAS 175
+D GS +R D+W + S I+PVG C + L PP
Sbjct: 97 LD--GSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLG 133
Score = 56.9 bits (137), Expect = 2e-10
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 1 PRIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPAST 44
+ + FDG+ FD+W + D++P GW + PP ++
Sbjct: 200 DEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGTS 243
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
lysine, regulator, developmental protein, metal-binding,
nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
2r57_A* 2r5a_A* 2r5m_A*
Length = 265
Score = 123 bits (310), Expect = 3e-35
Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 27/183 (14%)
Query: 1 PRIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYL- 59
R+RL DG + DFW + +++ G + PP SW YL
Sbjct: 63 SRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNA----SSWPGYLC 118
Query: 60 -HVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
+ +M AP F ++FK+G+KLEA+DKK
Sbjct: 119 KILNNAMVAPEEIFQP------------------EPPEPEENLFKVGQKLEAVDKK-NPQ 159
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKR 178
L ATV + ++H+ D G DYW + S I P GWC R+ + PP R
Sbjct: 160 LICCATVDAIKDDQIHVTFD--GWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSR 217
Query: 179 VSP 181
+
Sbjct: 218 MDS 220
Score = 100 bits (251), Expect = 1e-26
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
F W YL T S AAP CF + + P + FKIG KLEA+D
Sbjct: 5 FDWDAYLEETGSEAAPAKCFKQAQNP-------------------PNNDFKIGMKLEALD 45
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ +ATV V+G+RL + +D GS + D+W + S I +G C +N L P
Sbjct: 46 PR-NVTSTCIATVVGVLGSRLRLRLD--GSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQP 102
Query: 173 PAS 175
P
Sbjct: 103 PLG 105
Score = 61.9 bits (150), Expect = 4e-12
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
+I + FDG+ FD+W N D++P GW A + PP M ++
Sbjct: 173 QIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMD-SSSSKQRCPRPR 231
Query: 62 TKSMAAPPHCFTSSHSSKY 80
+A +S ++ +
Sbjct: 232 YTVVAESEAMVPASPATAH 250
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller,
transcription repressor, three malignant brain TU
repeats, transcription; HET: MES; 1.55A {Homo sapiens}
SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A*
3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A*
3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A*
2ri2_A* 2ri5_A*
Length = 331
Score = 124 bits (313), Expect = 4e-35
Identities = 55/172 (31%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R +HFD + D +D+W + + P ++P GW + + PP P+ N F W KYL
Sbjct: 178 RFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDN---FCWEKYLEE 234
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
T + A P F PP F + KLEA+D++ L
Sbjct: 235 TGASAVPTWAF----------------------KVRPPHSFLVNMKLEAVDRR-NPALIR 271
Query: 122 VATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV R+ IH D G S D+W D I P GWC + L PP
Sbjct: 272 VASVEDVEDHRIKIHFD--GWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPP 321
Score = 122 bits (308), Expect = 2e-34
Identities = 69/174 (39%), Positives = 87/174 (50%), Gaps = 27/174 (15%)
Query: 1 PRIRLHFDGYPDRFDFWVNCNHPDLYPCGW-NANFHRRIYPPASTPNMRNTAWFSWGKYL 59
R+RLHFDGY + DFWVN N PD++P GW H+ P FSW +YL
Sbjct: 70 YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEE-----FSWSQYL 124
Query: 60 HVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNL 119
T++ AAP H F S S PP F++G KLEA+D+ S L
Sbjct: 125 RSTRAQAAPKHLFVS------------------QSHSPPPLGFQVGMKLEAVDRMNPS-L 165
Query: 120 FHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VA+V DV+ +R +H D D DYW D S YI PVGWC++ L PP
Sbjct: 166 VCVASVTDVVDSRFLVHFD--NWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPP 217
Score = 93.2 bits (231), Expect = 4e-23
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+SW YL K++ AP F S + + + FK+G KLE ID
Sbjct: 10 WSWESYLEEQKAITAPVSLFQDSQAVTH-----------------NKNGFKLGMKLEGID 52
Query: 113 KKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVP 172
+ +++ + TV +V G RL +H D G S+ D+W + S I P GW + KL P
Sbjct: 53 PQ-HPSMYFILTVAEVCGYRLRLHFD--GYSECHDFWVNANSPDIHPAGWFEKTGHKLQP 109
Query: 173 P 173
P
Sbjct: 110 P 110
Score = 55.4 bits (133), Expect = 1e-09
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTA 51
RI++HFDG+ +DFW++ +HPD++P GW + + PP + +
Sbjct: 282 RIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSAS 331
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin
regulator, DNA-BIN metal-binding, nucleus, repressor,
transcription; HET: MLZ SUC; 2.80A {Drosophila
melanogaster}
Length = 447
Score = 125 bits (316), Expect = 9e-35
Identities = 36/175 (20%), Positives = 57/175 (32%), Gaps = 22/175 (12%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+ L + D FW + + P ++P GW + P + + +
Sbjct: 186 RLFLRYFDSDD--GFWCHEDSPIIHPVGWATTVGHNLAAPQDYLERM----LAGREAMIE 239
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
A F + S + F G KLEA+D +
Sbjct: 240 VHEDDATIELFK------------MNFTFDEYYSDGKTNSFVEGMKLEAVDPLN-LSSIC 286
Query: 122 VATVRDVIG-TRLHIHID--SAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
ATV V+ + I ID +S + S I P G+C N + + PP
Sbjct: 287 PATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNISVTPP 341
Score = 124 bits (313), Expect = 3e-34
Identities = 49/176 (27%), Positives = 67/176 (38%), Gaps = 32/176 (18%)
Query: 2 RIRLHFDGYPD----RFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGK 57
+ + D Y F + P ++P G+ + + + PP + F+W
Sbjct: 298 YMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRT----FTWEG 353
Query: 58 YLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGS 117
YL T ++AA H F P F++G LE D
Sbjct: 354 YLSDTGAVAAGQHLFHDII---------------------PDHGFEVGMSLECADLMD-P 391
Query: 118 NLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
L VATV V+G L +H D G +D D W D SA I PVGWC KL P
Sbjct: 392 RLVCVATVARVVGRLLKVHFD--GWTDEYDQWLDCESADIYPVGWCVLVNHKLEGP 445
Score = 113 bits (285), Expect = 3e-30
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 31/176 (17%)
Query: 1 PRIRLHFDGY-PDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYL 59
+ + ++G+ D DFWVN + +++ GW A + + PP + + W +L
Sbjct: 76 YKALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKY----KDWKDFL 131
Query: 60 --HVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGS 117
++ + P + + + S S F++G LE +DK
Sbjct: 132 VGRLSGARTLPSNFYNKINDS-------------------LQSRFRLGLNLECVDKD-RI 171
Query: 118 NLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
+ +ATV ++G RL + S D +W S I PVGW L P
Sbjct: 172 SQVRLATVTKIVGDRLFLRYF--DSDD--GFWCHEDSPIIHPVGWATTVGHNLAAP 223
Score = 87.0 bits (215), Expect = 1e-20
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 29/131 (22%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
+ W L AAP CF + + +G K+E +
Sbjct: 6 YDWLPRLSKENFNAAPVTCFPHAPGCE------------------VWDNLGVGMKVEVEN 47
Query: 113 KKGGS----------NLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGW 162
S F VAT+ ++ G + + + + D D+W ++ +A + VGW
Sbjct: 48 TDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDT-DSHDFWVNLCNAEVHSVGW 106
Query: 163 CRRNKVKLVPP 173
C L+PP
Sbjct: 107 CATRGKPLIPP 117
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin
regulator, metal-binding, nucleus, transcript
transcription regulation, zinc-finger; HET: MLZ; 2.10A
{Homo sapiens} PDB: 3dbb_A* 3cey_A
Length = 456
Score = 125 bits (314), Expect = 2e-34
Identities = 53/185 (28%), Positives = 70/185 (37%), Gaps = 31/185 (16%)
Query: 1 PRIRLHFDGYP---DRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGK 57
+ + DG P F + + ++P + + PP F+W
Sbjct: 288 GYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPPKGYEAQT----FNWEN 343
Query: 58 YLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGS 117
YL TKS AAP F P FK+G KLEA+D
Sbjct: 344 YLEKTKSKAAPSRLFNM---------------------DCPNHGFKVGMKLEAVDLME-P 381
Query: 118 NLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGK 177
L VATV+ V+ L IH D G D W D S I PVGWC +L PP + +
Sbjct: 382 RLICVATVKRVVHRLLSIHFD--GWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPVAAE 439
Query: 178 RVSPL 182
+PL
Sbjct: 440 PATPL 444
Score = 119 bits (298), Expect = 4e-32
Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 27/174 (15%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHV 61
R+RL ++ DFW + P ++P GW+ I +M +
Sbjct: 183 RLRLLYEDGDSDDDFWCHMWSPLIHPVGWSRRVGHGIKMSERRSDM------AHHPTFRK 236
Query: 62 TKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
A P + F+ G KLEAID
Sbjct: 237 IYCDAVPYLFKKVRA------------------VYTEGGWFEEGMKLEAIDPL-NLGNIC 277
Query: 122 VATVRDVI-GTRLHIHIDSAGSSD-RMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VATV V+ L I +D S+D + S I P +C++N ++L PP
Sbjct: 278 VATVCKVLLDGYLMICVDGGPSTDGLDWFCYHASSHAIFPATFCQKNDIELTPP 331
Score = 114 bits (287), Expect = 1e-30
Identities = 41/175 (23%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 1 PRIRLHFDGYPD--RFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKY 58
R+ L ++G+ + DFW N D++P GW A + + PP + W Y
Sbjct: 72 YRVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKF----TDWKGY 127
Query: 59 LHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
L + P F+ G +LE +DK +
Sbjct: 128 LMKRLVGSRT-----------------LPVDFHIKMVESMKYPFRQGMRLEVVDKS-QVS 169
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
+A V VIG RL + + D+W + S I PVGW RR +
Sbjct: 170 RTRMAVVDTVIGGRLRLLYE--DGDSDDDFWCHMWSPLIHPVGWSRRVGHGIKMS 222
Score = 91.3 bits (226), Expect = 4e-22
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
F WGK+L AAP CF H G K+E ++
Sbjct: 10 FDWGKFLKDHSYKAAPVSCF----------------KHVPLYD--QWEDVMKGMKVEVLN 51
Query: 113 KK--GGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKL 170
S ++ +A+V G R+ + + + D+W ++G+ + P+GWC N L
Sbjct: 52 SDAVLPSRVYWIASVIQTAGYRVLLRYEGFENDASHDFWCNLGTVDVHPIGWCAINSKIL 111
Query: 171 VPP 173
VPP
Sbjct: 112 VPP 114
Score = 55.1 bits (132), Expect = 2e-09
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWF 53
+ +HFDG+ +D WV+C PD+YP GW ++ PP +
Sbjct: 396 LLSIHFDGWDSEYDQWVDCESPDIYPVGWCELTGYQLQPPVAAEPATPLKAK 447
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics,
structural genomics consortium, metal-binding, nucleus,
zinc-finger; 2.50A {Homo sapiens}
Length = 437
Score = 122 bits (308), Expect = 1e-33
Identities = 49/175 (28%), Positives = 68/175 (38%), Gaps = 31/175 (17%)
Query: 2 RIRLHFDGYP---DRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKY 58
+ + DG F + P ++P G+ + PP + F W Y
Sbjct: 285 FLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPPRGYTKLP----FKWFDY 340
Query: 59 LHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
L T S+AAP F + +P F++G KLEA+D
Sbjct: 341 LRETGSIAAPVKLF---------------------NKDVPNHGFRVGMKLEAVDLME-PR 378
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
L VATV +I L IH D G + D W D S + PVGWC+ +L PP
Sbjct: 379 LICVATVTRIIHRLLRIHFD--GWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPP 431
Score = 111 bits (278), Expect = 2e-29
Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 25/180 (13%)
Query: 1 PRIRLHFDGYPD--RFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKY 58
L ++G+ + DFW N D++P GW A + + PP + + +W +
Sbjct: 74 YNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPLVPPRTIQHKY----TNWKAF 129
Query: 59 LHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSN 118
L + A P S FK ++E +DK+
Sbjct: 130 LVKRLTGAKTL-----------------PPDFSQKVSESMQYPFKPCMRVEVVDKRH-LC 171
Query: 119 LFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKLVPPASGKR 178
VA V VIG RL + + D+W + S I +GW R + K+
Sbjct: 172 RTRVAVVESVIGGRLRLVYEE-SEDRTDDFWCHMHSPLIHHIGWSRSIGHRFKRSDITKK 230
Score = 105 bits (264), Expect = 2e-27
Identities = 44/175 (25%), Positives = 63/175 (36%), Gaps = 35/175 (20%)
Query: 2 RIRLHFDGYPD-RFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLH 60
R+RL ++ D DFW + + P ++ GW+ + R
Sbjct: 185 RLRLVYEESEDRTDDFWCHMHSPLIHHIGWSRSIGHRFKRS--------------DITKK 230
Query: 61 VTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLF 120
PPH F FK G KLEAID +
Sbjct: 231 QDGHFDTPPHLFAKV-----------------KEVDQSGEWFKEGMKLEAIDPL-NLSTI 272
Query: 121 HVATVRDVIGTR-LHIHIDSAGSSD-RMDYWTDIGSAYIRPVGWCRRNKVKLVPP 173
VAT+R V+ L I ID + ++D + S I PVG+C N ++L PP
Sbjct: 273 CVATIRKVLADGFLMIGIDGSEAADGSDWFCYHATSPSIFPVGFCEINMIELTPP 327
Score = 88.9 bits (220), Expect = 3e-21
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 20/127 (15%)
Query: 53 FSWGKYLHVTKSMAAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAID 112
FSWG Y++ +AAP CF + ++E +
Sbjct: 12 FSWGNYINSNSFIAAPVTCFKHAPMG------------------TCWGDISENVRVEVPN 53
Query: 113 KKG--GSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYIRPVGWCRRNKVKL 170
+ +F +A + + G + + + +D+W +I + I PVGWC + L
Sbjct: 54 TDCSLPTKVFWIAGIVKLAGYNALLRYEGFENDSGLDFWCNICGSDIHPVGWCAASGKPL 113
Query: 171 VPPASGK 177
VPP + +
Sbjct: 114 VPPRTIQ 120
Score = 55.0 bits (132), Expect = 2e-09
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPN 46
+R+HFDG+ + +D WV+C PDLYP GW ++ PPAS +
Sbjct: 392 LLRIHFDGWEEEYDQWVDCESPDLYPVGWCQLTGYQLQPPASQSS 436
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.34.9.3
Length = 107
Score = 86.0 bits (213), Expect = 2e-22
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 98 PPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSAYI 157
PP F+ KLE +DK+ VATV D R+ +H D G ++ DYW D S I
Sbjct: 10 PPHGFQKKMKLEVVDKRN-PMFIRVATVADTDDHRVKVHFD--GWNNCYDYWIDADSPDI 66
Query: 158 RPVGWCRRNKVKLVPP 173
PVGWC + L PP
Sbjct: 67 HPVGWCSKTGHPLQPP 82
Score = 55.2 bits (133), Expect = 1e-10
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 1 PRIRLHFDGYPDRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTA 51
R+++HFDG+ + +D+W++ + PD++P GW + + PP S + +
Sbjct: 42 HRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEAS 92
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.34.9.3
Length = 127
Score = 81.9 bits (202), Expect = 1e-20
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 94 SSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIG 153
S P + +G +E D + + + +V + +G RL + ++ D W
Sbjct: 4 GSSGPIDLITVGSLIELQDSQNPF-QYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYL 62
Query: 154 SAYIRPVGWCRRNKVKLVPPAS 175
+RPVGWC+ NK ++ PP+
Sbjct: 63 DYRLRPVGWCQENKYRMDPPSE 84
Score = 62.7 bits (152), Expect = 3e-13
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 2 RIRLHFDGYP--DRFDFWVNCNHPDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYL 59
R+RL + G + +D W+ L P GW R+ PP+ ++ W L
Sbjct: 41 RLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMA--SEWKCTL 98
Query: 60 HVTKSMA----APPHCF-----TSSHSS 78
+ A P F S SS
Sbjct: 99 EKSLIDAAKFPLPMEVFKDHADLSGPSS 126
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2jtf_A
Length = 88
Score = 56.6 bits (136), Expect = 2e-11
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 98 PPSVFKIGRKLEAIDKKGGSNLFHVATVR--DVIGTRLHIHIDSAGSSDRMDYWTDIGSA 155
P F+IG +LEA+D ++ + + D ++ +H + S R D W S
Sbjct: 16 PGITFEIGARLEALDYL---QKWYPSRIEKIDYEEGKMLVHFE--RWSHRYDEWIYWDSN 70
Query: 156 YIRPVGWCRRNKVKL 170
+RP+ K L
Sbjct: 71 RLRPLERPALRKEGL 85
Score = 41.2 bits (96), Expect = 1e-05
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYPCGWNAN 33
++ +HF+ + R+D W+ + L P A
Sbjct: 49 KMLVHFERWSHRYDEWIYWDSNRLRPLERPAL 80
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo
sapiens} PDB: 3q1j_A
Length = 69
Score = 50.6 bits (121), Expect = 2e-09
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 94 SSHMPPSVFKIGRKLEAIDKKGGSNLFHVATVR--DVIGTRLHIHIDSAGSSDRMDYWTD 151
+ F++G +LEA D+ ++ A + D ++ IH + R D W
Sbjct: 5 PPNRRGISFEVGAQLEARDRL---KNWYPAHIEDIDYEEGKVLIHFK--RWNHRYDEWFC 59
Query: 152 IGSAYIRPV 160
S Y+RP+
Sbjct: 60 WDSPYLRPL 68
Score = 35.6 bits (82), Expect = 8e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 RIRLHFDGYPDRFDFWVNCNHPDLYP 27
++ +HF + R+D W + P L P
Sbjct: 42 KVLIHFKRWNHRYDEWFCWDSPYLRP 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.15
Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 48/153 (31%)
Query: 11 PDRFDFWVNCNHP-DLYPCGWNANFHRRIYPP----ASTPNMRNTAWFSWGKYLHVTKSM 65
V P LY G N + P + P FS ++L V
Sbjct: 374 AKNL---VVSGPPQSLY--GLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-RFLPVA--- 424
Query: 66 AAPPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKK-GGSNL----F 120
+P H S + P+ I + L + ++ +
Sbjct: 425 -SPFH-----------------------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 121 HVAT---VRDVIGTRLHIHIDSAGSSDRMDYWT 150
+R + G+ +D + W
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCI-IRLPVK-WE 491
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 29.1 bits (66), Expect = 0.76
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 26/99 (26%)
Query: 65 MA---APPHCFTSSHSSKYCACATQPGSHCFTSSHMPPSVFKIGRKLEAIDKKGGSNLFH 121
MA AP S + A A ++ LE +++
Sbjct: 81 MALYGAPEEMSPSEQVRRAIATA-----------------RQMLVALEKLNQGWQERGLV 123
Query: 122 VATVRDVIGTRLHIHIDSA-----GSSDRMDYWTDIGSA 155
+ R IH A GS +R D+ T IG +
Sbjct: 124 GRNEVPPVRFRCGIHQGMAVVGLFGSQERSDF-TAIGPS 161
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus
thuringiensis} PDB: 3eb7_A
Length = 589
Score = 29.4 bits (65), Expect = 0.79
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 23 PDLYPCGWNANFHRRIY-PPASTPNMRNTAWFSWGKYLHVTKSMAAPPHCFTSSHSSKY 80
YP A R +Y P + + + S + + + H F
Sbjct: 227 MRTYPMETKAQLTREVYTDPIGAIGAQGSWYDSAPSFNTLESTFIRGKHLFDFITRLSI 285
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC,
muconate lactonizing EN structural genomics, protein
structure initiative; 2.10A {Shewanella pealeana}
Length = 394
Score = 28.0 bits (63), Expect = 2.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 102 FKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSA 155
I + DK+ + ++ +R+VIG + + +D WTD A
Sbjct: 173 VCIIPNDKVSDKE---IVAYLRELREVIGWDMDMMVDCLYR------WTDWQKA 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.4
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 37 RIYPPASTPNM 47
++Y S P +
Sbjct: 30 KLYADDSAPAL 40
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP:
b.18.1.3 b.77.2.1 f.1.3.1
Length = 584
Score = 27.9 bits (61), Expect = 2.6
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 14 FDFWVNCNH--PDLYPCGWNANFHRRIYPPASTPNMRNTAWFSWGKYLHVTKSMAAPPHC 71
D LYP R + + P + +G ++ PH
Sbjct: 217 LDLIALFPLYDVRLYPKEVKTELTRDVL---TDPIVGVNNLRGYGTTFSNIENYIRKPHL 273
Query: 72 FT 73
F
Sbjct: 274 FD 275
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA,
unknown function, structural genomics, PSI-2, protein
structure initiative; 2.10A {Vibrio cholerae}
Length = 126
Score = 26.6 bits (58), Expect = 3.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 38 IYPPASTPNMRNTAWFSWGK 57
+YPP T N+ AW W K
Sbjct: 71 VYPPEITQNLFQHAWLEWRK 90
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 26.7 bits (60), Expect = 3.5
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 141 GSSDRMDYWTDIGSA 155
G+ RMDY T IG
Sbjct: 125 GADTRMDY-TIIGRE 138
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 26.8 bits (60), Expect = 3.8
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 141 GSSDRMDYWTDIGSA 155
GS R Y +G+
Sbjct: 127 GSEKRTKY-GVVGAQ 140
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, EFI, enzyme function initiative,
metal protein; HET: MSE; 1.50A {Paracoccus
denitrificans} PDB: 3n4e_A*
Length = 393
Score = 26.5 bits (59), Expect = 6.1
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 102 FKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHID 138
+ D ++ VR+++G I D
Sbjct: 161 IRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFD 197
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Length = 394
Score = 26.1 bits (58), Expect = 8.1
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 121 HVATVRDVIGTRLHIHIDSAGSSDRMDYWTDIGSA 155
++ +R ++G + +D +TD
Sbjct: 194 YLRELRGILGHDTDMMVDYLYR------FTDWYEV 222
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein
structure initiative (PSI) II, PSI-2, 9382A mandelate
racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Length = 393
Score = 25.7 bits (57), Expect = 9.2
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 102 FKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHID 138
K+G+ A+D V VR +G + + +D
Sbjct: 183 LKVGQPDGALDIA------RVTAVRKHLGDAVPLMVD 213
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain,
RNA binding, activator, chromatin regulator,
transcription; NMR {Saccharomyces cerevisiae}
Length = 94
Score = 25.0 bits (54), Expect = 9.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 5 LHFDGYPDRFDFWVNCNHPDL 25
+H+ Y R D W+ + +L
Sbjct: 59 VHYVNYNKRLDEWITTDRINL 79
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function
initiative, EFI, lyase; 1.50A {Agrobacterium
tumefaciens}
Length = 372
Score = 25.7 bits (57), Expect = 9.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 102 FKIGRKLEAIDKKGGSNLFHVATVRDVIGTRLHIHID 138
K+G ID + VR+ + + + I ID
Sbjct: 173 IKVGHDDPNIDIA------RLTAVRERVDSAVRIAID 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.481
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,089,910
Number of extensions: 170374
Number of successful extensions: 683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 65
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)