BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15288
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAV 91
W +G C + + +VF S ++TA+A DRY I++P QPR+ +I +IW +
Sbjct: 98 WYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVL 157
Query: 92 A 92
A
Sbjct: 158 A 158
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 105 STLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVSLCIALPYAYCMTLAKHSDSA 164
S ++TA+A DRY I++P QPR+ +I +IW ++L +A P Y T + S
Sbjct: 119 SIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYST-TETMPSR 177
Query: 165 TLCNEDW---SSETFQRIFY 181
+C +W ++ ++++++
Sbjct: 178 VVCMIEWPEHPNKIYEKVYH 197
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQP-RMRLGTCTTLI-VLIW 89
W FG LC V ++F ST TLTA+++DRY I +P + +R + + V IW
Sbjct: 190 WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIW 249
Query: 90 AVATV 94
A+A+V
Sbjct: 250 ALASV 254
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQP-RMRLGTCTTLI-VLIWAVSLCIALPYAYCMTLAKHSD 162
ST TLTA+++DRY I +P + +R + + V IWA++ + +P A M A+ D
Sbjct: 211 STFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAI-MGSAQVED 269
Query: 163 SATLC 167
C
Sbjct: 270 EEIEC 274
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPR--MRLGTCTTLIVLIW 89
W FG LC V A +++ S L +T I+IDR+ ++YP Q LG + + IW
Sbjct: 86 WQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIW 145
Query: 90 AVATVCVL 97
A+A V+
Sbjct: 146 ALAIAGVV 153
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQPR--MRLGTCTTLIVLIWAVSLCIALP 150
S L +T I+IDR+ ++YP Q LG + + IWA+++ +P
Sbjct: 107 SILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVP 154
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLI 88
TW++G LC L ++ V S TL IAIDRY I PF Q M +I +
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV 135
Query: 89 WAVATV 94
WA++ +
Sbjct: 136 WAISAL 141
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS 144
S TL IAIDRY I PF Q M +I +WA+S
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAIS 139
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLI 88
TW++G LC L ++ V S TL IAIDRY I PF Q M +I +
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTV 135
Query: 89 WAVATV 94
WA++ +
Sbjct: 136 WAISAL 141
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS 144
S TL IAIDRY I PF Q M +I +WA+S
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAIS 139
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLI 88
TW FG C ++ V S TL IA+DRYF I PF Q + +I+++
Sbjct: 247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 306
Query: 89 WAVA 92
W V+
Sbjct: 307 WIVS 310
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 269 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 328
Query: 162 DS 163
++
Sbjct: 329 EA 330
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ 73
+W FG VLC +V ++F S TLT +++DRY + +P +
Sbjct: 86 SWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK 128
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLI 88
TW FG C ++ V S TL IA+DRYF I PF Q + +I+++
Sbjct: 70 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV 129
Query: 89 WAVA 92
W V+
Sbjct: 130 WIVS 133
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 92 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 151
Query: 162 DSATLCNED 170
++ E+
Sbjct: 152 EAINCYAEE 160
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ 73
TW FG +LC V ++F S TLT +++DRY + +P +
Sbjct: 78 TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK 120
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQP-RMRLGTCTTLI-VLIWAVSLCIALPYAYCMTLAKHSD 162
S TLT +++DRY + +P + R LI + IW ++ + +P M + + D
Sbjct: 100 SIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPI-MVMAVTQPRD 158
Query: 163 SATLC 167
A +C
Sbjct: 159 GAVVC 163
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 75 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 134
Query: 90 AVA 92
V+
Sbjct: 135 IVS 137
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 96 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 155
Query: 162 DS 163
++
Sbjct: 156 EA 157
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 166
Query: 90 AVA 92
V+
Sbjct: 167 IVS 169
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 128 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 187
Query: 162 DS 163
++
Sbjct: 188 EA 189
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 106 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 165
Query: 90 AVA 92
V+
Sbjct: 166 IVS 168
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 186
Query: 162 DS 163
++
Sbjct: 187 EA 188
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ 73
TW FG +LC +V ++F S TL +++DRY + +P +
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK 123
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 76 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 135
Query: 90 AVA 92
V+
Sbjct: 136 IVS 138
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 97 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 156
Query: 162 DS 163
++
Sbjct: 157 EA 158
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 107 WTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 166
Query: 90 AVA 92
V+
Sbjct: 167 IVS 169
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 128 SIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 187
Query: 162 DS 163
++
Sbjct: 188 EA 189
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 100 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 159
Query: 90 AVA 92
V+
Sbjct: 160 IVS 162
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 121 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 180
Query: 162 DSATLCNED 170
++ E+
Sbjct: 181 EAINCYAEE 189
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIW 89
W FG C ++ V S TL IA+DRYF I PF Q + +I+++W
Sbjct: 99 WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVW 158
Query: 90 AVA 92
V+
Sbjct: 159 IVS 161
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVS-LCIALPYAYCMTLAKHS 161
S TL IA+DRYF I PF Q + +I+++W VS L LP A H
Sbjct: 120 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 179
Query: 162 DS 163
++
Sbjct: 180 EA 181
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLI 88
WIFG C + + + F+S +T+ I+IDRY VI P ++ I++I
Sbjct: 99 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMII 156
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLI 88
WIFG C + + + F+S +T+ I+IDRY VI P ++ I++I
Sbjct: 100 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMII 157
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMY 70
WIFG LC +V + V+ + L L I++DRY I++
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVH 113
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 97 LYDAGEALSTLTLTAIAIDRYFVIMYPFQPR--MRLGTCTTLIVLIWAVSLCIALPYAYC 154
L DA + L + ++++ RY I +PF+ + M I IW S +A+P +
Sbjct: 116 LRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFT 175
Query: 155 MTLAKHSDSAT 165
M L S T
Sbjct: 176 MGLQNRSADGT 186
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPR--MRLGTCTTLIVLIW 89
W FG C + + + + L + ++++ RY I +PF+ + M I IW
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGT--CTTLIVLIW 89
W G + C L V+ S + L I+ DRYF I P R + T +I L W
Sbjct: 78 WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 90 AVATV 94
++ V
Sbjct: 138 VISFV 142
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTL--IVLIW 89
++FGP C+L + + ++ +L +AI+RY V+ P R G + + W
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 162
Query: 90 AVATVC 95
+A C
Sbjct: 163 VMALAC 168
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTL--IVLIW 89
++FGP C+L + + ++ +L +AI+RY V+ P R G + + W
Sbjct: 103 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 161
Query: 90 AVATVC 95
+A C
Sbjct: 162 VMALAC 167
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTL--IVLIW 89
++FGP C+L + + ++ +L +AI+RY V+ P R G + + W
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 162
Query: 90 AVATVC 95
+A C
Sbjct: 163 VMALAC 168
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTL--IVLIW 89
++FGP C+L + + ++ +L +AI+RY V+ P R G + + W
Sbjct: 103 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 161
Query: 90 AVATVC 95
+A C
Sbjct: 162 VMALAC 167
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 46 QMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVATVCVLYDAGEALS 105
+ + FV +L IA+ V+ PF + G C ++ V VL + S
Sbjct: 54 NVTNYFVVSLAAADIAVG---VLAIPFAITISTGFCAACHGCLFIACFVLVLTQS----S 106
Query: 106 TLTLTAIAIDRYFVIMYPFQ-PRMRLGTCTTLIVLI-WAVSLCIA----LPYAYCMTLAK 159
+L AIAIDRY I P + + GT I+ I W +S I L + C +
Sbjct: 107 IFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE 166
Query: 160 HSDSATLCNEDWSSETFQRI 179
+ + C E + F+ +
Sbjct: 167 GKNHSQGCGEGQVACLFEDV 186
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTL--IVLIW 89
++FGP C+L + + ++ +L +AI+RY V+ P R G + + W
Sbjct: 104 FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 162
Query: 90 AVATVC 95
+A C
Sbjct: 163 VMALAC 168
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTL--IVLIW 89
++FGP C+L + + ++ +L +AI+RY V+ P R G + + W
Sbjct: 104 FVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 162
Query: 90 AVATVC 95
+A C
Sbjct: 163 VMALAC 168
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMY 70
W FG LC V V+++ S L I++DRY I++
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMY 70
W FG LC V V+++ S L I++DRY I++
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMY 70
W FG LC V V+++ S L I++DRY I++
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH 150
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 51 FVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVATVCVLYDAGEALSTLTLT 110
FV +L IA+ V+ PF + G C ++ V VL + S +L
Sbjct: 44 FVVSLAAADIAVG---VLAIPFAITISTGFCAACHGCLFIACFVLVLTQS----SIFSLL 96
Query: 111 AIAIDRYFVIMYPFQ-PRMRLGT-CTTLIVLIWAVSLCIA----LPYAYCMTLAKHSDSA 164
AIAIDRY I P + + GT +I + W +S I L + C + +
Sbjct: 97 AIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKQHS 156
Query: 165 TLCNEDWSSETFQRI 179
C E + F+ +
Sbjct: 157 QGCGEGQVACLFEDV 171
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 46 QMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVATVCVLYDAGEALS 105
+ + FV +L IA+ V+ PF + G C ++ V VL + S
Sbjct: 64 NVTNYFVVSLAAADIAVG---VLAIPFAITISTGFCAACHGCLFIACFVLVLTQS----S 116
Query: 106 TLTLTAIAIDRYFVIMYPFQ-PRMRLGT-CTTLIVLIWAVSLCIA----LPYAYCMTLAK 159
+L AIAIDRY I P + + GT +I + W +S I L + C +
Sbjct: 117 IFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE 176
Query: 160 HSDSATLCNEDWSSETFQRI 179
+ + C E + F+ +
Sbjct: 177 GKNHSQGCGEGQVACLFEDV 196
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF 72
W GPV+C L V S + L I+ DRYF + P
Sbjct: 89 WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPL 129
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query: 46 QMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVATVCVLYDAGEALS 105
+ + FV +L I + V+ PF + G C ++ V VL + S
Sbjct: 39 NVTNYFVVSLAAADILVG---VLAIPFAITISTGFCAACHGCLFIACFVLVLAQS----S 91
Query: 106 TLTLTAIAIDRYFVIMYPFQ-PRMRLGT-CTTLIVLIWAVSLCIA----LPYAYCMTLAK 159
+L AIAIDRY I P + + GT +I + W +S I L + C +
Sbjct: 92 IFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQPKE 151
Query: 160 HSDSATLCNEDWSSETFQRI 179
+ + C E + F+ +
Sbjct: 152 GKNHSQGCGEGQVACLFEDV 171
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 103 ALSTLTLTAIAIDRYFVIMYPFQ-PRMRLGT-CTTLIVLIWAVSLCIAL 149
A S +L AIAIDRY I P + + GT +I + W +S I L
Sbjct: 89 ASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.140 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,635,782
Number of Sequences: 62578
Number of extensions: 139808
Number of successful extensions: 224
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 75
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)