RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15288
(187 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 61.9 bits (151), Expect = 5e-12
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 25 SSSHRSTWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCT 82
W FG LC LV + +V+ + S L LTAI+IDRY I++P +
Sbjct: 37 YYLVGGDWPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAK 96
Query: 83 TLIVLIWAVATVCVL 97
LI+++W +A + L
Sbjct: 97 VLILVVWVLALLLSL 111
Score = 53.5 bits (129), Expect = 6e-09
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVSLCIALPYA-YCMTLAKHS 161
S L LTAI+IDRY I++P + LI+++W ++L ++LP +
Sbjct: 65 SILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEE 124
Query: 162 DSATLCNEDWSSETFQRIFY 181
+ T C D+ E+ +R +
Sbjct: 125 GNVTTCLIDFPEESTKRSYT 144
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 40.8 bits (95), Expect = 2e-04
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYP--FQPRMRLGTCTTLIVLIW 89
WIFG +C ++ + + F + +T ++IDRYF I+YP FQ L ++ W
Sbjct: 161 WIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISW 220
Query: 90 AVATV 94
++ +
Sbjct: 221 ILSLI 225
Score = 33.1 bits (75), Expect = 0.071
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 109 LTAIAIDRYFVIMYP--FQPRMRLGTCTTLIVLIWAVSLCIALP 150
+T ++IDRYF I+YP FQ L ++ W +SL I P
Sbjct: 186 ITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSP 229
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 34.4 bits (79), Expect = 0.026
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIV--LIW 89
W FG C +V + + S +T +++DRY I++P + IV +IW
Sbjct: 104 WSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIW 163
Query: 90 AVATV 94
++ +
Sbjct: 164 IISII 168
Score = 27.8 bits (62), Expect = 3.4
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 63 DRYFVIMYPFQ------PRMRLGTCTTLIVLIWAVATVCVLYDAGEALSTLTLTAIAIDR 116
D FV+ PFQ + G IV LY G S +T +++DR
Sbjct: 85 DLLFVMTLPFQIYYYILFQWSFGEFACKIV--------SGLYYIGFYNSMNFITVMSVDR 136
Query: 117 YFVIMYPFQPRMRLGTCTTLIV--LIWAVSLCIALPYAYCMTLAKHSDSATLCNEDWSSE 174
Y I++P + IV +IW +S+ P + T K ++ C +
Sbjct: 137 YIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNKT 196
Query: 175 TFQRIF 180
++F
Sbjct: 197 MNWKLF 202
>gnl|CDD|169981 PRK09577, PRK09577, multidrug efflux protein; Reviewed.
Length = 1032
Score = 34.4 bits (79), Expect = 0.031
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 16 ISLESRLRESSSHRSTWIFGPVLCHLVPY--AQMVSVFVSTLTLTAI-AIDRYFVIMYPF 72
++ E R+R + S + F P + + +PY + V V ++ + T I A F++M+ F
Sbjct: 299 VATEKRVRATMDELSRY-FPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLF 357
Query: 73 QPRMRLGTCTTLIVLIWAVATVCVLYDAGEALSTLTL 109
R TL+V + + T V+ AG +++ LT+
Sbjct: 358 MQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTM 394
>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
Provisional.
Length = 1037
Score = 33.6 bits (77), Expect = 0.052
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 52 VSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVATVCVLYDAGEALSTLTLTA 111
V TL L AIA+ F++MY F R T+ V + + T VLY G +++TLT+ A
Sbjct: 341 VKTL-LEAIAL--VFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFA 397
Query: 112 IAI 114
+ +
Sbjct: 398 MVL 400
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 32.5 bits (74), Expect = 0.12
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 94 VCVLYDAGEALSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLI-WAVSLCIALPYA 152
+LY A + T+ IA DRY VI + R T I+ + W SL + P
Sbjct: 108 ASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAP 167
Query: 153 YCMTLAKHSD 162
T+ H D
Sbjct: 168 VYTTVVAHDD 177
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 32.2 bits (73), Expect = 0.13
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 32 WIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIM 69
WIFG +C LV V F + +T I+IDRY +++
Sbjct: 91 WIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVV 128
>gnl|CDD|233182 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial)
Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins
scoring above the trusted cutoff (1000) form a tight
clade within the RND (Resistance-Nodulation-Cell
Division) superfamily. Proteins scoring greater than the
noise cutoff (100) appear to form a larger clade,
cleanly separated from more distant homologs that
include cadmium/zinc/cobalt resistance transporters.
This family is one of several subfamilies within the
scope of Pfam model pfam00873 [Cellular processes, Toxin
production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 1044
Score = 28.5 bits (64), Expect = 2.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 60 IAIDRYFVIMYPFQPRMRLGTCTTLIVLIWAVATVCVLYDAGEALSTLTLTAI 112
AI F++MY F R T+ V + + T VL G +++TLT+ A+
Sbjct: 346 EAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAM 398
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 26.8 bits (60), Expect = 8.1
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 50 VFVSTLTLTAIAIDRYFV-IMYPFQ 73
FV TL + +A+ R V I+ +Q
Sbjct: 379 EFVHTLNGSGLAVGRTLVAILENYQ 403
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.137 0.445
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,271,517
Number of extensions: 824559
Number of successful extensions: 869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 42
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)