RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15288
(187 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 94.0 bits (234), Expect = 2e-23
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRMRLGTCTTLIVLIW 89
+ W +G C + + +VF S ++TA+A DRY I++P QPR+ +I +IW
Sbjct: 96 NEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIW 155
Query: 90 AVATVCVL 97
+A +
Sbjct: 156 VLALLLAF 163
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 80.6 bits (199), Expect = 2e-18
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQPRM--RLGTCTTLIVL 87
W FG LC V ++F ST TLTA+++DRY I +P + + V
Sbjct: 188 GFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVA 247
Query: 88 IWAVATVCVL 97
IWA+A+V +
Sbjct: 248 IWALASVVGV 257
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 74.0 bits (182), Expect = 3e-16
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 26 SSHRSTWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQP-RMRLGTCTTL 84
+S ++FGP C+L + + ++ +L +AI+RY V+ P R
Sbjct: 98 TSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG 157
Query: 85 IVLIWAVATVCVL 97
+ W +A C
Sbjct: 158 VAFTWVMALACAA 170
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 58.8 bits (142), Expect = 8e-11
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 26 SSHRSTWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQP--RMRLGTCTT 83
S WIFG C + + + F+S +T+ I+IDRY VI P +M
Sbjct: 95 SCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI 154
Query: 84 LIVLIWAVATVCVL 97
+I+ +W + + +
Sbjct: 155 MIIFVWLWSVLWAI 168
Score = 48.0 bits (114), Expect = 4e-07
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 93 TVCVLYDAGEAL----STLTLTAIAIDRYFVIMYPFQP--RMRLGTCTTLIVLIWAVSLC 146
C +Y + S +T+ I+IDRY VI P +M +I+ +W S+
Sbjct: 106 AACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL 165
Query: 147 IALPYAYCMTLAKHSDSATLCNEDWSSETFQRIFY 181
A+ + C+ D+ S
Sbjct: 166 WAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSN 200
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 58.5 bits (141), Expect = 1e-10
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVL 87
TW FG +LC +V ++F S TL +++DRY + +P + V
Sbjct: 80 GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVC 139
Query: 88 IWAVATVCVL 97
W +++ L
Sbjct: 140 NWILSSAIGL 149
Score = 48.8 bits (116), Expect = 2e-07
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVSLCIALPYAYCMTLAKHSD 162
S TL +++DRY + +P + V W +S I LP + T
Sbjct: 103 SIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQG 162
Query: 163 SATLCNEDWSSETFQR 178
S C +S T+
Sbjct: 163 S-IDCTLTFSHPTWYW 177
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 54.9 bits (132), Expect = 2e-09
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 27 SHRSTWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ-PRMRLGTCTTLI 85
+ W FG LC V V+++ S L I++DRY I++ R R ++
Sbjct: 107 DAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVV 166
Query: 86 -VLIWAVATVCVL 97
V +W A + +
Sbjct: 167 YVGVWIPALLLTI 179
Score = 49.5 bits (118), Expect = 1e-07
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ-PRMRLGTCTTLI-VLIWAVSLCIALPYAYCMTLAKHSD 162
S L I++DRY I++ R R ++ V +W +L + +P + +D
Sbjct: 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-SEAD 191
Query: 163 SATLCNEDWSSETFQRIF 180
+C+ + ++ + +F
Sbjct: 192 DRYICDRFYPNDLWVVVF 209
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 50.1 bits (119), Expect = 8e-08
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLI 88
+ C + +V S +L AIAIDRY I P + +I +
Sbjct: 84 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 143
Query: 89 WAVATV 94
W ++
Sbjct: 144 WVLSFA 149
Score = 47.0 bits (111), Expect = 9e-07
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 105 STLTLTAIAIDRYFVIMYPF--QPRMRLGTCTTLIVLIWAVSLCIALP----YAYCMTLA 158
S +L AIAIDRY I P + +I + W +S I L + C
Sbjct: 106 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPK 165
Query: 159 KHSDSATLCNEDWSSETFQRIFYPSWL 185
+ + + C E + F+ + +++
Sbjct: 166 EGKNHSQGCGEGQVACLFEDVVPMNYM 192
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 49.9 bits (119), Expect = 1e-07
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVL 87
TW FG C ++ V S TL IA+DRYF I PF+ + +I++
Sbjct: 246 KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 305
Query: 88 IWAVATV 94
+W V+ +
Sbjct: 306 VWIVSGL 312
Score = 43.0 bits (101), Expect = 2e-05
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLIWAVSLCIALPYAY 153
S TL IA+DRYF I PF+ + +I+++W VS +
Sbjct: 269 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 319
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 49.7 bits (118), Expect = 1e-07
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLI 88
+ C + +V S +L AIAIDRY I P + + +I +
Sbjct: 94 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 153
Query: 89 WAVATVC 95
W ++
Sbjct: 154 WVLSFAI 160
Score = 46.6 bits (110), Expect = 1e-06
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLIWAVSLCIALP----YAYCMTLA 158
S +L AIAIDRY I P + + +I + W +S I L + C
Sbjct: 116 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPK 175
Query: 159 KHSDSATLCNEDWSSETFQRIFYPSWL 185
+ + + C E + F+ + +++
Sbjct: 176 EGKNHSQGCGEGQVACLFEDVVPMNYM 202
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 48.7 bits (115), Expect = 3e-07
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 27 SHRSTWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYP-FQPRMRLGTCTTLI 85
S +T+ P L + V++ S +L AIAI+RY ++ LI
Sbjct: 123 SGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLI 182
Query: 86 VLIWAVATV 94
W ++ +
Sbjct: 183 SACWVISLI 191
Score = 45.3 bits (106), Expect = 4e-06
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 105 STLTLTAIAIDRYFVIMYP-FQPRMRLGTCTTLIVLIWAVSLCIALP 150
S +L AIAI+RY ++ LI W +SL +
Sbjct: 149 SVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGL 195
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 47.4 bits (112), Expect = 8e-07
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLI 88
W GPV+C L V S + L I+ DRYF + P + +I
Sbjct: 88 YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAA 147
Query: 89 WAVATV 94
W ++ +
Sbjct: 148 WVLSFI 153
Score = 41.6 bits (97), Expect = 6e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLIWAVSLCIALP 150
S + L I+ DRYF + P + +I W +S + P
Sbjct: 110 SVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAP 157
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 46.3 bits (110), Expect = 1e-06
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVL 87
TW++G LC L ++ V S TL IAIDRY I PF+ M +I
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICT 134
Query: 88 IWAVATV 94
+WA++ +
Sbjct: 135 VWAISAL 141
Score = 41.6 bits (98), Expect = 6e-05
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLIWAVSLCIALP 150
S TL IAIDRY I PF+ M +I +WA+S ++
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL 145
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 46.3 bits (109), Expect = 2e-06
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ-----PRMRLGTCTTL 84
W F + C + ++ S L AI+IDRY ++ P + +
Sbjct: 103 GVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALM 162
Query: 85 IVLIWAVATV 94
I +W +A
Sbjct: 163 ITAVWVLAFA 172
Score = 43.6 bits (102), Expect = 2e-05
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ-----PRMRLGTCTTLIVLIWAVSLCIALP 150
S L AI+IDRY ++ P + +I +W ++ ++ P
Sbjct: 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP 176
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 43.9 bits (103), Expect = 1e-05
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 30 STWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVL 87
W FG C ++ V S TL IA+DRYF I PF+ + +I++
Sbjct: 104 KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILM 163
Query: 88 IWAVATV 94
+W V+ +
Sbjct: 164 VWIVSGL 170
Score = 40.5 bits (94), Expect = 2e-04
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLIWAVSLCIALP 150
S TL IA+DRYF I PF+ + +I+++W VS +
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 174
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 43.5 bits (102), Expect = 1e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 31 TWIFGPVLCHLVPYAQMVSVFVSTLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLI 88
W G LC V+ S ++ + IDRY + P + + I+
Sbjct: 73 KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGA 132
Query: 89 WAVA 92
W ++
Sbjct: 133 WFLS 136
Score = 41.6 bits (97), Expect = 6e-05
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ--PRMRLGTCTTLIVLIWAVSLCIALP 150
S ++ + IDRY + P + + I+ W +S +P
Sbjct: 95 SIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 27.0 bits (60), Expect = 0.51
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 53 STLTLTAIAIDRYFVIMYPFQ 73
S + L AI++DRY+ I +
Sbjct: 3 SIVHLCAISLDRYWSITQAIE 23
Score = 27.0 bits (60), Expect = 0.51
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 105 STLTLTAIAIDRYFVIMYPFQ 125
S + L AI++DRY+ I +
Sbjct: 3 SIVHLCAISLDRYWSITQAIE 23
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.87
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 22/41 (53%)
Query: 2 EKKSPNISCFTAVFISLESRLR----ESSSHRSTWIFGPVL 38
EK++ + L++ L+ +S+ P L
Sbjct: 18 EKQA--LK-------KLQASLKLYADDSA---------PAL 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 4.3
Identities = 23/142 (16%), Positives = 36/142 (25%), Gaps = 62/142 (43%)
Query: 97 LYD------------AGEALSTLTLTAIAIDRYFVIMYPFQ-----PRMR-----LGTCT 134
LY + E LS L T + ++ F P L +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 135 TLIVLIWAVSLCIALPYAYCMT----------LAKHSDSATLCNED------------WS 172
LI + L Y +T L + AT ++ W
Sbjct: 236 ISCPLIGVIQLA-----HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW- 289
Query: 173 SETFQRI--------FYPSWLG 186
E+F F ++G
Sbjct: 290 -ESFFVSVRKAITVLF---FIG 307
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.137 0.445
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,799,383
Number of extensions: 151184
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 37
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.0 bits)