BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1529
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation
           Resistance Protein 2 From Zebrafish
          Length = 167

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 20/163 (12%)

Query: 13  LPVRITMYQPVLLYTTEEHGCSLTTFYYRV-EQHEPTLLMIKTTNNEVFGAYCSTKWGER 71
           LP R   Y   L ++T +HG S+ T Y  + +Q  P LL+IK ++ ++FGA  S  +   
Sbjct: 20  LPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPF--- 76

Query: 72  NQKDERGNRTAYFGTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQKMITIGG 131
             K   G    ++GTGETFLF+ YPE   Y W G          N  F+  D   +  GG
Sbjct: 77  --KVSEG----FYGTGETFLFTFYPEFEAYKWTG---------DNLFFIKGDMDSLAFGG 121

Query: 132 GEGQ-AIWMDENIRYGKTDKCSTFNNPPLCVGGDFEIRVLEVY 173
           G G+  +W+D ++ +G+   C TF NP L +  DF ++ +E++
Sbjct: 122 GSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIW 164


>pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
 pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
          Length = 287

 Score = 29.6 bits (65), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 12  WLPVRITMYQPVLLYTTEEHG-CSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYCSTKW 68
           W+  R     P++L  T+EHG C +  F +     +PTLL+I    NE  G   S  W
Sbjct: 194 WVEARRAAGTPIVLVGTDEHGDCDVFDFDF----TQPTLLLI---GNETAG--LSNAW 242


>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
          Length = 287

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 9   LWSWLPVRITMYQPVLLYTTEEHG-CSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYCSTK 67
           +  W+  R     P++L  T+EHG C +  F +     +PTLL+I    NE  G   S  
Sbjct: 191 VMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDF----TQPTLLLI---GNETAG--LSNA 241

Query: 68  W 68
           W
Sbjct: 242 W 242


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,764,270
Number of Sequences: 62578
Number of extensions: 230105
Number of successful extensions: 469
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 7
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)