Query psy1529
Match_columns 175
No_of_seqs 116 out of 788
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:17:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2372|consensus 100.0 1.3E-47 2.7E-52 300.6 13.5 157 1-175 79-240 (241)
2 smart00584 TLDc domain in TBC 100.0 1.4E-46 3.1E-51 288.5 18.1 158 1-175 4-164 (165)
3 PF07534 TLD: TLD; InterPro: 100.0 5.1E-36 1.1E-40 221.9 11.0 135 24-175 1-138 (139)
4 COG5142 OXR1 Oxidation resista 100.0 8.8E-36 1.9E-40 225.1 8.6 157 1-175 37-211 (212)
5 KOG2557|consensus 100.0 3.1E-35 6.8E-40 243.8 10.7 157 6-175 220-378 (427)
6 KOG2801|consensus 99.9 8.7E-30 1.9E-34 208.6 -3.8 168 4-175 348-553 (559)
7 KOG4636|consensus 99.7 1.4E-16 2.9E-21 133.4 11.1 125 20-175 297-427 (483)
8 PF08211 dCMP_cyt_deam_2: Cyti 54.2 20 0.00043 26.2 3.5 58 9-66 1-75 (124)
9 PF08976 DUF1880: Domain of un 45.4 15 0.00032 26.6 1.7 31 1-43 4-34 (118)
10 cd02007 TPP_DXS Thiamine pyrop 35.2 41 0.00088 26.1 2.9 30 29-58 160-193 (195)
11 TIGR00204 dxs 1-deoxy-D-xylulo 29.9 64 0.0014 29.8 3.7 38 19-58 236-277 (617)
12 PRK12571 1-deoxy-D-xylulose-5- 28.7 1.2E+02 0.0025 28.3 5.2 41 16-58 241-286 (641)
13 PF00456 Transketolase_N: Tran 27.9 62 0.0013 27.6 3.0 39 17-57 202-245 (332)
14 TIGR00759 aceE pyruvate dehydr 26.0 81 0.0018 30.6 3.6 33 29-61 357-394 (885)
15 COG2871 NqrF Na+-transporting 25.1 82 0.0018 26.8 3.1 45 81-134 241-286 (410)
16 PHA03014 hypothetical protein; 25.0 1.3E+02 0.0029 22.9 4.1 31 20-64 38-68 (163)
17 PLN02234 1-deoxy-D-xylulose-5- 22.2 93 0.002 29.1 3.2 33 26-58 286-324 (641)
18 PRK12315 1-deoxy-D-xylulose-5- 20.0 1E+02 0.0022 28.3 3.0 31 28-58 212-246 (581)
No 1
>KOG2372|consensus
Probab=100.00 E-value=1.3e-47 Score=300.62 Aligned_cols=157 Identities=40% Similarity=0.801 Sum_probs=149.2
Q ss_pred CCHHHHHHHHHcCCccccCC-CceEEEecccccccHHHHHHhhcC-CCCEEEEEEcCCCcEEEeeccCCcccCCccccCC
Q psy1529 1 MNPKKLFTLWSWLPVRITMY-QPVLLYTTEEHGCSLTTFYYRVEQ-HEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERG 78 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~~~~~-~~~llyss~~hG~S~~~f~~~~~~-~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~ 78 (175)
|.|+++.+|+..||+|++.. .|+|+||+.+||+|+++||+++.. ..|.|||||+++|+|||||.+++.+.
T Consensus 79 l~~~~~~~l~e~lp~R~q~~~pW~liyst~~hG~Sl~TlY~~~~~~~~p~lLvird~dg~vFGa~~~~~i~p-------- 150 (241)
T KOG2372|consen 79 LTPEMIRQLREHLPPRVQGYTPWRLIYSTEKHGFSLRTLYRSMAELDEPVLLVIRDTDGDVFGAFVSDAIRP-------- 150 (241)
T ss_pred CCHHHHHHHHhhCCcceeeecchhhhcccccccccHHHHHHhhhcccCcEEEEEEcCCCCEeeEeeccceec--------
Confidence 67999999999999999998 899999999999999999999997 77999999999999999999999865
Q ss_pred CCCceecCCCeeEEEEcC--CCCcCCCcccccccccccccceeEeeCCCeeeeecCCC-ceeEEeCccCCccccCCCCCC
Q psy1529 79 NRTAYFGTGETFLFSLYP--ERAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEG-QAIWMDENIRYGKTDKCSTFN 155 (175)
Q Consensus 79 ~~~~~~G~~~~FLF~l~p--~~~~y~~~~~~~~~~~~~~n~~~~~~~~~~i~~Ggg~~-~~l~id~~l~~g~s~~~~Tf~ 155 (175)
.++|||+++||||++.| ++++|+|+|. |++|++|+.+.|+||||.| ++||||.+|.+|.|++|+||+
T Consensus 151 -~dhyyGtgetFLft~~~~~e~~vy~~TG~---------n~f~i~c~~dfLa~G~GgGRfgLwLD~dL~~G~S~~ceTFg 220 (241)
T KOG2372|consen 151 -NDHYYGTGETFLFTFFPGREFKVYRWTGD---------NSFFIYCDKDFLAFGGGGGRFGLWLDGDLLHGSSHPCETFG 220 (241)
T ss_pred -cCCcCCCCCeEEEEecCCCceeEeeecCC---------cceEEEechhHhhhcCCCCceEEEecccccccccCCCcccC
Confidence 47899999999999999 8999999984 6899999999999998766 999999999999999999999
Q ss_pred CCCCCCCCceEEeEEEEEeC
Q psy1529 156 NPPLCVGGDFEIRVLEVYGV 175 (175)
Q Consensus 156 n~~L~~~~~F~i~~iEVw~~ 175 (175)
|.+|+..++|.|.+||+|+|
T Consensus 221 N~~Ls~~qdF~Iq~lElW~f 240 (241)
T KOG2372|consen 221 NEPLSDKQDFIIQDLELWGF 240 (241)
T ss_pred CcccCCcCceEEEEEEEEee
Confidence 99999999999999999986
No 2
>smart00584 TLDc domain in TBC and LysM domain containing proteins.
Probab=100.00 E-value=1.4e-46 Score=288.54 Aligned_cols=158 Identities=42% Similarity=0.803 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHcCCccccCCCceEEEecccccccHHHHHHhhcC-CCCEEEEEEcCCCcEEEeeccCCcccCCccccCCC
Q psy1529 1 MNPKKLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQ-HEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGN 79 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~~~~~~~~llyss~~hG~S~~~f~~~~~~-~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~~ 79 (175)
|++++++.|+.+||.+.+..+|+|||++++||+|+++|+++|.+ ++|+|||||++++.|||||++++|+.+
T Consensus 4 L~~~~~~~l~~~lP~~~~~~~~~llyss~~~G~s~~~~~~~~~~~~~P~lliik~~~~~ifGaf~~~~w~~~-------- 75 (165)
T smart00584 4 LSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYASQAWRVS-------- 75 (165)
T ss_pred CCHHHHHHHHHhCCHhHhCCCeEEEEEcCcCCccHHHHHHHhcccCCCEEEEEEeCCCCEEEEEcCCCCccC--------
Confidence 78999999999999999988999999999999999999999998 568999999999999999999999864
Q ss_pred CCceecCCCeeEEEEcCCCCcCCCcccccccccccccceeEeeCCCeeeeecCCC-ceeEEeCccCCccccCCCCCCCCC
Q psy1529 80 RTAYFGTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEG-QAIWMDENIRYGKTDKCSTFNNPP 158 (175)
Q Consensus 80 ~~~~~G~~~~FLF~l~p~~~~y~~~~~~~~~~~~~~n~~~~~~~~~~i~~Ggg~~-~~l~id~~l~~g~s~~~~Tf~n~~ 158 (175)
..|||+++||||++.|+.++|+|++.+ +.+|+++++++++||||.+ ++||||+++.+|.+..|+||+|++
T Consensus 76 -~~~~G~~~sFLF~l~p~~~~y~~~~~n--------~~~~~~~~~~~~~~Ggg~g~~~l~id~~l~~g~s~~~~tf~~~~ 146 (165)
T smart00584 76 -DHFYGTGESFLFQLNPKFVVYDWTGKN--------KYYYINGTPDSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPP 146 (165)
T ss_pred -CcEECCCCeEEEEEcCCceEEcccccC--------cEEEEecCCCeEeecCCCCceeEEEehhhCCeEeCCCCCcCCcc
Confidence 569999999999999999999998753 2388999999999999854 899999999999999999999999
Q ss_pred CC-CCCceEEeEEEEEeC
Q psy1529 159 LC-VGGDFEIRVLEVYGV 175 (175)
Q Consensus 159 L~-~~~~F~i~~iEVw~~ 175 (175)
|+ .+.+|+|.+||||++
T Consensus 147 L~~~~~~f~I~~iEVw~~ 164 (165)
T smart00584 147 LSTKQEDFLILDIEVWGF 164 (165)
T ss_pred ccCCCCCEEEEEEEEEec
Confidence 99 488999999999986
No 3
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [].; PDB: 4ACJ_A.
Probab=100.00 E-value=5.1e-36 Score=221.93 Aligned_cols=135 Identities=36% Similarity=0.804 Sum_probs=98.1
Q ss_pred EEEecccccccHHHHHHhhcCCCCEEEEEEcCCCcEEEeeccCCcccCCccccCCCCCceecCCCeeEEEEcCCCCcCCC
Q psy1529 24 LLYTTEEHGCSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGNRTAYFGTGETFLFSLYPERAKYPW 103 (175)
Q Consensus 24 llyss~~hG~S~~~f~~~~~~~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~~~~~~~G~~~~FLF~l~p~~~~y~~ 103 (175)
|||++++||+|+++|+++|.+++|+|+||+++++.|||||++.+|+.. ...++|+.++|||++.|..++|++
T Consensus 1 Lly~s~~dG~s~~~f~~~~~~~~~~l~iv~t~~g~iFG~y~~~~~~~~--------~~~~~~~~~~FlF~l~~~~~~~~~ 72 (139)
T PF07534_consen 1 LLYSSSRDGFSFNTFHSKCDGKGPTLLIVKTSDGQIFGAYTSQPWKSS--------NKGYFGDSESFLFSLEPKFKIFKW 72 (139)
T ss_dssp EEEEHHHH-S-HHHHHHHHTT-S-EEEEEEETTS-EEEEEESS-------------SS--B--TT-EEEE-SSS-EEEE-
T ss_pred CcCccchhCcCHHHHHHhcCCCCCEEEEEECCCCcEEEEEeCCccccc--------CccccCCCCeEEEEeccccceeec
Confidence 899999999999999999999999999999999999999999999753 246999999999999999999998
Q ss_pred cccccccccccccceeEeeCCCeeeeecCC-CceeEEeCccCCccccCCCCCCCCCCC--CCCceEEeEEEEEeC
Q psy1529 104 VGVEQETQVSHANELFMAADQKMITIGGGE-GQAIWMDENIRYGKTDKCSTFNNPPLC--VGGDFEIRVLEVYGV 175 (175)
Q Consensus 104 ~~~~~~~~~~~~n~~~~~~~~~~i~~Ggg~-~~~l~id~~l~~g~s~~~~Tf~n~~L~--~~~~F~i~~iEVw~~ 175 (175)
++. |..+++++..+|+||++. +++||||.++.++.+..|.||++++|. ....|+|.+||||+|
T Consensus 73 ~~~---------~~~~~~~~~~~~~fG~~~~~~~l~i~~~~~~~~~~~~~ty~~~~l~~~~~~~f~i~~iEV~~~ 138 (139)
T PF07534_consen 73 TGK---------NQNYINCNNQGLGFGGGSNGFDLWIDSDFNSGSSSHSETYGNPPLSNDGQESFDIDEIEVWGL 138 (139)
T ss_dssp -SS-------------EEEETTEEEES-SSSS-SEEEETTS-EEEE--BTTTTB--SS--SSSEEEEEEEEEEE-
T ss_pred ccc---------cceeeeccCCcceEeecCCceEEEEeCCCCcEEEeCCCccCCCcccCCCCCCcEEEEEEEEEE
Confidence 653 578888889999999976 689999999999999999999999999 688999999999986
No 4
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.8e-36 Score=225.09 Aligned_cols=157 Identities=27% Similarity=0.462 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHcCCccccCC-CceEEEecccccccHHHHHHhhcC-CCC-----EEEEEEcCCCcEEEeeccCCcccCCc
Q psy1529 1 MNPKKLFTLWSWLPVRITMY-QPVLLYTTEEHGCSLTTFYYRVEQ-HEP-----TLLMIKTTNNEVFGAYCSTKWGERNQ 73 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~~~~~-~~~llyss~~hG~S~~~f~~~~~~-~gp-----tllvik~~~g~vfGay~~~~w~~~~~ 73 (175)
|+|+....|++.||.|++.. .|+||||..+||+|+++|+..|.. +.| .||+|||++|.|||||.++....
T Consensus 37 lt~e~~~~ire~lp~Ry~~~t~W~llySl~~~G~Sl~t~y~~~~~~~~~frrvg~VLa~rd~dgd~FGaf~~d~~~p--- 113 (212)
T COG5142 37 LTEEIVTRIRESLPDRYKYSTSWRLLYSLFENGFSLRTFYESFGENEWPFRRVGFVLACRDKDGDLFGAFFEDRIRP--- 113 (212)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcchhHHHHHHHhCcccCcccCceEEEEEEcCCCCEeeeechhheec---
Confidence 68999999999999999876 599999999999999999999986 445 99999999999999999988753
Q ss_pred cccCCCCCceecCCCeeEEEEc--CC-------CCcCCCcccccccccccccceeEeeCCCeeeeecCCC-ceeEEeCcc
Q psy1529 74 KDERGNRTAYFGTGETFLFSLY--PE-------RAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEG-QAIWMDENI 143 (175)
Q Consensus 74 ~~~~~~~~~~~G~~~~FLF~l~--p~-------~~~y~~~~~~~~~~~~~~n~~~~~~~~~~i~~Ggg~~-~~l~id~~l 143 (175)
..+|||++|||||.+. |. ..+|+.+| .+..-+||+++.++||+|+| ++||||+.|
T Consensus 114 ------a~hy~G~~e~FLwk~~~~p~~~~~~k~~~~yp~~g---------~~~f~iYCt~~FlafG~g~grygLl~d~sL 178 (212)
T COG5142 114 ------ARHYYGRDEMFLWKAARRPADRLADKEVAVYPISG---------GKGFGIYCTPDFLAFGCGGGRYGLLIDKSL 178 (212)
T ss_pred ------cCCCCCCccEEEEeeccCCccccCcceeEEeEeec---------CCceEEEEchHHhhhcCCCCcEEEEecCcc
Confidence 5789999999999994 42 34566554 45677999999999999887 899999999
Q ss_pred CCccccCCCCCCCCCCCCCCc-eEEeEEEEEeC
Q psy1529 144 RYGKTDKCSTFNNPPLCVGGD-FEIRVLEVYGV 175 (175)
Q Consensus 144 ~~g~s~~~~Tf~n~~L~~~~~-F~i~~iEVw~~ 175 (175)
..|.|++|+||+|.+|+.... |+|..+|||-+
T Consensus 179 l~g~S~p~~tfgN~~Ls~~g~~f~Iv~lElW~v 211 (212)
T COG5142 179 LDGESHPVETFGNCLLSSKGHFFRIVYLELWLV 211 (212)
T ss_pred cccccCCCccccccccccCCCceEEEEEEEEee
Confidence 999999999999999999865 59999999964
No 5
>KOG2557|consensus
Probab=100.00 E-value=3.1e-35 Score=243.81 Aligned_cols=157 Identities=29% Similarity=0.516 Sum_probs=134.1
Q ss_pred HHHHHHcCCccccCCCceEEEecccccccHHHHHHhhcCCCCEEEEEEcCCCcEEEeeccCCcccCCccccCCCCCceec
Q psy1529 6 LFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGNRTAYFG 85 (175)
Q Consensus 6 ~~~L~~~lP~~~~~~~~~llyss~~hG~S~~~f~~~~~~~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~~~~~~~G 85 (175)
+.-|...||- -+..+|++||+++.||.|+++|+.++..+|||++||++++|+|||+|++++|.. +.+|+|
T Consensus 220 ~l~in~~lp~-~~r~~wr~lysss~~gqsfSt~l~~~~~~gp~v~vI~d~d~~vFGgyASq~we~---------~pQF~G 289 (427)
T KOG2557|consen 220 ALHINGALPH-HERVEWKLLYSSSVHGQSFSTFLGHTSGMGPSVLIIKDTEGYVFGGYASQPWER---------YPQFYG 289 (427)
T ss_pred hheecccCCc-chhhceeeeeeecccccchhhhhhhccCCCCeEEEEEcCCCceecccccCcccc---------cCccCC
Confidence 3445667774 355689999999999999999999999999999999999999999999999975 479999
Q ss_pred CCCeeEEEEcCCCCcCCCcccccccccccccceeEeeCCCeeeeecCCC-ceeEEeCccCCccc-cCCCCCCCCCCCCCC
Q psy1529 86 TGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEG-QAIWMDENIRYGKT-DKCSTFNNPPLCVGG 163 (175)
Q Consensus 86 ~~~~FLF~l~p~~~~y~~~~~~~~~~~~~~n~~~~~~~~~~i~~Ggg~~-~~l~id~~l~~g~s-~~~~Tf~n~~L~~~~ 163 (175)
+.+||||+|.|...+|+.||.++.+++.+-++. ..|+||+|||..+ ++||||.+|..|+| ..|.||++|.|+.++
T Consensus 290 d~~~fLfqL~Pkma~y~aTgyn~~yqylN~~QQ---tiPNGLGmGGq~n~fgL~Id~sFg~Gqs~e~cTty~spqLSk~~ 366 (427)
T KOG2557|consen 290 DMKSFLFQLNPKMAIYRATGYNTNYQYLNFTQQ---TIPNGLGMGGQINHFGLFIDASFGQGQSFECCTTYESPQLSKTS 366 (427)
T ss_pred ccceeeeeecchheeecccCCccceEEeccccc---cCCCccccCcccceeeEEEEeecCCCccccccccCCCccccccc
Confidence 999999999999999999998643333211111 1368999999877 79999999999999 566888899999999
Q ss_pred ceEEeEEEEEeC
Q psy1529 164 DFEIRVLEVYGV 175 (175)
Q Consensus 164 ~F~i~~iEVw~~ 175 (175)
+|+|..||||++
T Consensus 367 ~fqi~~iEvWav 378 (427)
T KOG2557|consen 367 RFQIEVIEVWAV 378 (427)
T ss_pred cccceEEEEEec
Confidence 999999999985
No 6
>KOG2801|consensus
Probab=99.94 E-value=8.7e-30 Score=208.59 Aligned_cols=168 Identities=45% Similarity=0.940 Sum_probs=143.9
Q ss_pred HHHHHHHHcCCccccCCCceEEEecccccccHHHHHHhhcCCCCEEEEEEcCCCcEEEeeccCCcccCCccccCCCCCce
Q psy1529 4 KKLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGNRTAY 83 (175)
Q Consensus 4 ~~~~~L~~~lP~~~~~~~~~llyss~~hG~S~~~f~~~~~~~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~~~~~~ 83 (175)
.+++.||+|+|.++...++-|||||-.||+|+.+||-.|+++.||+++|||....|.|||.+..|++++-. +.+-.|
T Consensus 348 remrdiwswvperfalcqplllfsslqhgyslarfyfqcegheptllliktmqkevcgaylstdwsernkf---ggklgf 424 (559)
T KOG2801|consen 348 REMRDIWSWVPERFALCQPLLLFSSLQHGYSLARFYFQCEGHEPTLLLIKTMQKEVCGAYLSTDWSERNKF---GGKLGF 424 (559)
T ss_pred HHHhhHHHhhhHHHhhhhHHHHHHHhhcchhhhhheeeccCCCCeeehHHHHHHHHhhHhcccchhhhccc---Cceecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999987521 335679
Q ss_pred ecCCCeeEEEEcCCCCcCCCccccc--------------ccc------------------------cccccceeEeeCCC
Q psy1529 84 FGTGETFLFSLYPERAKYPWVGVEQ--------------ETQ------------------------VSHANELFMAADQK 125 (175)
Q Consensus 84 ~G~~~~FLF~l~p~~~~y~~~~~~~--------------~~~------------------------~~~~n~~~~~~~~~ 125 (175)
||++|||+|++.|+.+-|.|.-... +.. .+.....||.+..+
T Consensus 425 fgtgecfvfrlqpevqryewvvikhpeltkppplmaaeptaplshsassdpadrlspflaarhfnlpsktesmfmaggsd 504 (559)
T KOG2801|consen 425 FGTGECFVFRLQPEVQRYEWVVIKHPELTKPPPLMAAEPTAPLSHSASSDPADRLSPFLAARHFNLPSKTESMFMAGGSD 504 (559)
T ss_pred cccccEEEEEechhhheeeEEEEcCcccCCCCCcccCCCCCCCCccccCCchhhcChHHHHHhcCCCcchhHHHhcCCCc
Confidence 9999999999999988777653210 000 11123467777788
Q ss_pred eeeeecCCCceeEEeCccCCccccCCCCCCCCCCCCCCceEEeEEEEEeC
Q psy1529 126 MITIGGGEGQAIWMDENIRYGKTDKCSTFNNPPLCVGGDFEIRVLEVYGV 175 (175)
Q Consensus 126 ~i~~Ggg~~~~l~id~~l~~g~s~~~~Tf~n~~L~~~~~F~i~~iEVw~~ 175 (175)
-+..|||.|.+||||.|+.+|.++.|.||+|.||++ ++|-|..||.|||
T Consensus 505 clivgggggqalyidgdlnrgrtshcdtfnnqplcs-enfliaaveawgf 553 (559)
T KOG2801|consen 505 CLIVGGGGGQALYIDGDLNRGRTSHCDTFNNQPLCS-ENFLIAAVEAWGF 553 (559)
T ss_pred eEEEcCCCceeEEecccccCCccccccccCCCccch-hhHHHHHHHHhcC
Confidence 899999989999999999999999999999999986 5788999999986
No 7
>KOG4636|consensus
Probab=99.70 E-value=1.4e-16 Score=133.38 Aligned_cols=125 Identities=26% Similarity=0.361 Sum_probs=98.3
Q ss_pred CCceEEEecccccccHHHHHHhhcC-CCCEEEEEEcCCCcEEEeeccCCcccCCccccCCCCCceecCCCeeEEEEcCCC
Q psy1529 20 YQPVLLYTTEEHGCSLTTFYYRVEQ-HEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGNRTAYFGTGETFLFSLYPER 98 (175)
Q Consensus 20 ~~~~llyss~~hG~S~~~f~~~~~~-~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~~~~~~~G~~~~FLF~l~p~~ 98 (175)
..|+|||.|..||..+++|.+.+.+ +||+|+|++|+++++.-.-+++.|++. +..|+|+ .+-+|++.|.+
T Consensus 297 shwtlLY~S~~HG~g~NRf~~~V~gYrgPtlvi~~tkder~~viA~~qew~e~--------~~~fgG~-~~~~f~i~P~f 367 (483)
T KOG4636|consen 297 SHWTLLYTSLQHGIGTNRFETLVFGYRGPTLVIFRTKDERVVVIAADQEWRES--------GNRFGGT-FTSFFEIVPNF 367 (483)
T ss_pred CceeecchhhhhccchhhHHHHhccccCCeEEEEEecCCcEEEEeechhhhhh--------ccccccc-cceeEEeecce
Confidence 4699999999999999999999987 999999999999998888999999885 3445454 45589999998
Q ss_pred CcCCCcccccccccccccceeE----eeCCCeeeeecCCC-ceeEEeCccCCccccCCCCCCCCCCCCCCceEEeEEEEE
Q psy1529 99 AKYPWVGVEQETQVSHANELFM----AADQKMITIGGGEG-QAIWMDENIRYGKTDKCSTFNNPPLCVGGDFEIRVLEVY 173 (175)
Q Consensus 99 ~~y~~~~~~~~~~~~~~n~~~~----~~~~~~i~~Ggg~~-~~l~id~~l~~g~s~~~~Tf~n~~L~~~~~F~i~~iEVw 173 (175)
+.+..+ +|-.|. ++.+.||.||+..| ..|.||++|.+-.. ..-.-.|.+||||
T Consensus 368 ~~~~~s----------~N~~Y~nl~~rg~p~Gl~fg~tlgne~i~idedF~kItv------------lpveA~ildIEvW 425 (483)
T KOG4636|consen 368 RRIDGS----------ANSIYCNLKLRGSPYGLSFGNTLGNEEIKIDEDFDKITV------------LPVEAEILDIEVW 425 (483)
T ss_pred EEecCC----------CceEEEeccccCCccceecCCCCCCceeeeccchhhccc------------cchhcceeeEEEe
Confidence 777642 233332 23467999999765 79999999986532 2234479999999
Q ss_pred eC
Q psy1529 174 GV 175 (175)
Q Consensus 174 ~~ 175 (175)
|+
T Consensus 426 Gc 427 (483)
T KOG4636|consen 426 GC 427 (483)
T ss_pred cc
Confidence 85
No 8
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=54.19 E-value=20 Score=26.25 Aligned_cols=58 Identities=21% Similarity=0.412 Sum_probs=26.6
Q ss_pred HHHcCCccccCCCc---eEEEecccccccHHH---HHHh---hcC-------CCCEEEEEEcCCCcEE-EeeccC
Q psy1529 9 LWSWLPVRITMYQP---VLLYTTEEHGCSLTT---FYYR---VEQ-------HEPTLLMIKTTNNEVF-GAYCST 66 (175)
Q Consensus 9 L~~~lP~~~~~~~~---~llyss~~hG~S~~~---f~~~---~~~-------~gptllvik~~~g~vf-Gay~~~ 66 (175)
|.+.||..+.-.++ .+|.....||..+.. +... +.+ +.|.=+.+++.+|.|| |.|+..
T Consensus 1 L~~~LP~~FGP~DL~i~~~Ll~~~~~~l~~~~~d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~~G~y~En 75 (124)
T PF08211_consen 1 LHEYLPDAFGPKDLGITPLLLEPQDHGLALESEDPLVQAALEAANRSYAPYSKCPSGVALLTSDGRIYTGRYAEN 75 (124)
T ss_dssp HHHHSTT--SGGGGTS-S-BTS----------SSHHHHHHHHHHCT-B-TTT---EEEEEEETTS-EEEEE-B--
T ss_pred CcccCcCCCCccccCCcccccCCCCCccccCCccHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEee
Confidence 56778887765555 688888888887632 2222 222 5689999999999988 888864
No 9
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=45.37 E-value=15 Score=26.62 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHcCCccccCCCceEEEecccccccHHHHHHhhc
Q psy1529 1 MNPKKLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVE 43 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~~~~~~~~llyss~~hG~S~~~f~~~~~ 43 (175)
|++++|+.||.-+|.+.++ +| .+..|+++..
T Consensus 4 LtDeQFdrLW~e~Pvn~~G---rL---------kY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKG---RL---------KYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS----E---------EHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccC---CE---------eHHHHHHHcc
Confidence 7899999999999987544 23 4577888766
No 10
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=35.20 E-value=41 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=23.7
Q ss_pred ccccccHHHHHHhhcC----CCCEEEEEEcCCCc
Q psy1529 29 EEHGCSLTTFYYRVEQ----HEPTLLMIKTTNNE 58 (175)
Q Consensus 29 ~~hG~S~~~f~~~~~~----~gptllvik~~~g~ 58 (175)
..||..+..+.+.+.. ++|++|+++|.+|.
T Consensus 160 ~vdG~d~~~l~~a~~~a~~~~~P~~I~~~T~kg~ 193 (195)
T cd02007 160 PVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKGK 193 (195)
T ss_pred eECCCCHHHHHHHHHHHHhCCCCEEEEEEEeccc
Confidence 4699998888776543 68999999998763
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=29.86 E-value=64 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCCceEEEecccccccHHHHHHhhcC----CCCEEEEEEcCCCc
Q psy1529 19 MYQPVLLYTTEEHGCSLTTFYYRVEQ----HEPTLLMIKTTNNE 58 (175)
Q Consensus 19 ~~~~~llyss~~hG~S~~~f~~~~~~----~gptllvik~~~g~ 58 (175)
..-|..+. ..||..+..+.+-+.. ++|++|+++|.+|.
T Consensus 236 ~~G~~~~~--~vDGhd~~~l~~al~~ak~~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 236 ELGFNYIG--PVDGHDLLELIETLKNAKKLKGPVFLHIQTKKGK 277 (617)
T ss_pred HcCCcEEc--ccCCCCHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 34565555 7799999998776553 67999999998765
No 12
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.73 E-value=1.2e+02 Score=28.30 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=29.4
Q ss_pred cccCCCceEEEecccccccHHHHHHhhcC-----CCCEEEEEEcCCCc
Q psy1529 16 RITMYQPVLLYTTEEHGCSLTTFYYRVEQ-----HEPTLLMIKTTNNE 58 (175)
Q Consensus 16 ~~~~~~~~llyss~~hG~S~~~f~~~~~~-----~gptllvik~~~g~ 58 (175)
+++..-|+-+ ...||..+..+.+.+.. .+|++|+++|.+|.
T Consensus 241 ~f~a~G~~~~--~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~T~kGk 286 (641)
T PRK12571 241 LFEELGFTYV--GPIDGHDMEALLSVLRAARARADGPVLVHVVTEKGR 286 (641)
T ss_pred HHHHcCCEEE--CccCCCCHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Confidence 3344456655 34599999988766542 57999999999875
No 13
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=27.92 E-value=62 Score=27.57 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=27.1
Q ss_pred ccCCCceEEEecccccccHHHHHHhhcC-----CCCEEEEEEcCCC
Q psy1529 17 ITMYQPVLLYTTEEHGCSLTTFYYRVEQ-----HEPTLLMIKTTNN 57 (175)
Q Consensus 17 ~~~~~~~llyss~~hG~S~~~f~~~~~~-----~gptllvik~~~g 57 (175)
++..-|+.+-- .||..+..+.+.+.+ .+|++|+++|..|
T Consensus 202 ~~a~Gw~v~~v--~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 202 FEAFGWNVIEV--CDGHDVEAIYAAIEEAKASKGKPTVIIARTVKG 245 (332)
T ss_dssp HHHTT-EEEEE--EETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TT
T ss_pred HHHhhhhhccc--ccCcHHHHHHHHHHHHHhcCCCCceeecceEEe
Confidence 34456776643 699999998877654 5799999999876
No 14
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=26.02 E-value=81 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.3
Q ss_pred ccccccHHHHHHhhc----CC-CCEEEEEEcCCCcEEE
Q psy1529 29 EEHGCSLTTFYYRVE----QH-EPTLLMIKTTNNEVFG 61 (175)
Q Consensus 29 ~~hG~S~~~f~~~~~----~~-gptllvik~~~g~vfG 61 (175)
+++|..+..+++... .+ .||+|+++|.+|+=.+
T Consensus 357 ~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 357 NRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIKGYGMG 394 (885)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeeecCCCC
Confidence 999999999877653 23 5999999999876544
No 15
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=25.08 E-value=82 Score=26.84 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=27.5
Q ss_pred CceecCCCeeEEEEcCCCCcCCCcccccccccccccceeEeeCC-CeeeeecCCC
Q psy1529 81 TAYFGTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQ-KMITIGGGEG 134 (175)
Q Consensus 81 ~~~~G~~~~FLF~l~p~~~~y~~~~~~~~~~~~~~n~~~~~~~~-~~i~~Ggg~~ 134 (175)
....|-.++++|+|+|.-+|- -+|-- .+.|+..+. ..+-+|||.|
T Consensus 241 ~~PpG~mSSyi~sLKpGDKvt-isGPf--------GEfFaKdtdaemvFigGGAG 286 (410)
T COG2871 241 DAPPGQMSSYIWSLKPGDKVT-ISGPF--------GEFFAKDTDAEMVFIGGGAG 286 (410)
T ss_pred CCCccceeeeEEeecCCCeEE-Eeccc--------hhhhhccCCCceEEEecCcC
Confidence 567799999999999975542 12211 244554333 3566677754
No 16
>PHA03014 hypothetical protein; Provisional
Probab=24.99 E-value=1.3e+02 Score=22.89 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=20.8
Q ss_pred CCceEEEecccccccHHHHHHhhcCCCCEEEEEEcCCCcEEEeec
Q psy1529 20 YQPVLLYTTEEHGCSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYC 64 (175)
Q Consensus 20 ~~~~llyss~~hG~S~~~f~~~~~~~gptllvik~~~g~vfGay~ 64 (175)
..|+|.|+... .|-...|+.+.++.|+|+-=
T Consensus 38 ~~~~L~f~~~~--------------~Ga~ATIvp~~g~~V~Gvlw 68 (163)
T PHA03014 38 HSFKLCYSKEI--------------DSVIASIKKDDNGIVFGILY 68 (163)
T ss_pred cceEEeccCCc--------------CCceEEEEECCCCEEEEEEE
Confidence 36677765532 44557788888888888853
No 17
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=22.18 E-value=93 Score=29.10 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=25.6
Q ss_pred EecccccccHHHHHHhhcC------CCCEEEEEEcCCCc
Q psy1529 26 YTTEEHGCSLTTFYYRVEQ------HEPTLLMIKTTNNE 58 (175)
Q Consensus 26 yss~~hG~S~~~f~~~~~~------~gptllvik~~~g~ 58 (175)
|-...||.++..+.+-+.. .+|++|+++|.+|.
T Consensus 286 ~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGk 324 (641)
T PLN02234 286 YVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGR 324 (641)
T ss_pred EEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCC
Confidence 4456799999988766542 37999999998765
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=20.05 E-value=1e+02 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=25.2
Q ss_pred cccccccHHHHHHhhcC----CCCEEEEEEcCCCc
Q psy1529 28 TEEHGCSLTTFYYRVEQ----HEPTLLMIKTTNNE 58 (175)
Q Consensus 28 s~~hG~S~~~f~~~~~~----~gptllvik~~~g~ 58 (175)
...||..+..+++-+.+ ++|++|.++|.+|.
T Consensus 212 ~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~ 246 (581)
T PRK12315 212 YVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGK 246 (581)
T ss_pred EeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCC
Confidence 35599999998877654 78999999998864
Done!