Query psy1529
Match_columns 175
No_of_seqs 116 out of 788
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:18:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4acj_A WU\:FB25H12 protein,; i 100.0 2.1E-52 7.1E-57 320.4 16.4 157 1-175 8-166 (167)
2 2k8f_B Cellular tumor antigen 31.3 26 0.0009 19.0 1.7 16 1-16 14-29 (39)
3 2l14_B Cellular tumor antigen 15.0 50 0.0017 19.2 0.7 16 1-16 2-17 (49)
4 2zdj_A Hypothetical protein TT 14.7 69 0.0024 19.7 1.3 8 168-175 47-54 (69)
5 2qtc_A Pyruvate dehydrogenase 14.3 1.2E+02 0.0039 28.2 3.3 32 29-60 360-396 (886)
6 2ky6_A Mediator of RNA polymer 12.2 2.2E+02 0.0076 20.8 3.7 51 16-66 77-141 (166)
7 3rim_A Transketolase, TK; TPP, 11.1 1.6E+02 0.0053 26.6 3.1 35 21-57 231-270 (700)
8 3l84_A Transketolase; TKT, str 10.8 1.6E+02 0.0055 26.1 3.0 36 20-58 205-244 (632)
9 3bqa_A Sensor protein PHOQ; hi 10.6 1.9E+02 0.0064 20.7 2.7 28 44-71 38-65 (148)
10 3m49_A Transketolase; alpha-be 9.9 2.3E+02 0.0079 25.3 3.7 30 29-58 241-275 (690)
No 1
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
Probab=100.00 E-value=2.1e-52 Score=320.38 Aligned_cols=157 Identities=34% Similarity=0.728 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHcCCccccCCCceEEEecccccccHHHHHHhhcC-CCCEEEEEEcCCCcEEEeeccCCcccCCccccCCC
Q psy1529 1 MNPKKLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQ-HEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGN 79 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~~~~~~~~llyss~~hG~S~~~f~~~~~~-~gptllvik~~~g~vfGay~~~~w~~~~~~~~~~~ 79 (175)
|+++++++|+.+||++++..+|+|||++++||+|+++|+++|.+ ++|||||||++++.|||||++++|+.
T Consensus 8 Lt~~~~~~L~~~LP~~~~~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g~vFGaf~s~~w~~--------- 78 (167)
T 4acj_A 8 LEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKV--------- 78 (167)
T ss_dssp CCHHHHHHHHTTSCGGGTTCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTSCEEEEEESSCCCC---------
T ss_pred CCHHHHHHHHHHCchhhccCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCceEEEEEeCCcccc---------
Confidence 78999999999999999999999999999999999999999998 69999999999999999999999975
Q ss_pred CCceecCCCeeEEEEcCCCCcCCCcccccccccccccceeEeeCCCeeeeecCCC-ceeEEeCccCCccccCCCCCCCCC
Q psy1529 80 RTAYFGTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEG-QAIWMDENIRYGKTDKCSTFNNPP 158 (175)
Q Consensus 80 ~~~~~G~~~~FLF~l~p~~~~y~~~~~~~~~~~~~~n~~~~~~~~~~i~~Ggg~~-~~l~id~~l~~g~s~~~~Tf~n~~ 158 (175)
+..|||+++||||++.|+.++|+|++. |++|+++++++|+|||++| ++||||++|.+|.|.+|+||+||+
T Consensus 79 ~~~~~G~~~sFLF~l~p~~~~y~~tg~---------N~~f~~~~~~~l~~Ggg~g~~~L~id~~l~~G~s~~c~Tf~n~~ 149 (167)
T 4acj_A 79 SEGFYGTGETFLFTFYPEFEAYKWTGD---------NLFFIKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPM 149 (167)
T ss_dssp CSSCBCCTTCEEEECSSSCEEEECCSS---------CCCCEEEETTEEEESCSSSSCSEEEETTSCEEEECCBTTTTBCC
T ss_pred cCcccCCCCeEEEEEcCCCccccccCC---------CceEEEeCCCccccCCCCCceEEEEeCCCCCEEeCCCCCCCCcc
Confidence 368999999999999999999999985 6789999999999999866 799999999999999999999999
Q ss_pred CCCCCceEEeEEEEEeC
Q psy1529 159 LCVGGDFEIRVLEVYGV 175 (175)
Q Consensus 159 L~~~~~F~i~~iEVw~~ 175 (175)
|+++++|+|.+||||+|
T Consensus 150 L~~~~~F~i~~vEvW~~ 166 (167)
T 4acj_A 150 LSMKEDFFVQDIEIWSF 166 (167)
T ss_dssp SSSSSEEEEEEEEEEEC
T ss_pred cCCCCceEEEEEEEEEE
Confidence 99999999999999997
No 2
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=31.32 E-value=26 Score=19.05 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHcCCcc
Q psy1529 1 MNPKKLFTLWSWLPVR 16 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~ 16 (175)
|+.+.+..||..||..
T Consensus 14 LSQETFsdLW~LLP~~ 29 (39)
T 2k8f_B 14 LSQETFSDLWKLLPEN 29 (39)
T ss_dssp CSCHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHhCCcc
Confidence 5778999999999986
No 3
>2l14_B Cellular tumor antigen P53; CBP, TAD, protein binding; NMR {Homo sapiens}
Probab=14.98 E-value=50 Score=19.17 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHcCCcc
Q psy1529 1 MNPKKLFTLWSWLPVR 16 (175)
Q Consensus 1 ~~~~~~~~L~~~lP~~ 16 (175)
|+++.+..||..||..
T Consensus 2 LSQETFSdLWkLLP~n 17 (49)
T 2l14_B 2 LSQETFSDLWKLLPEN 17 (49)
T ss_dssp CCTTSHHHHHHHSSTT
T ss_pred ccHHHHHHHHHhCCcc
Confidence 5778899999999974
No 4
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=14.69 E-value=69 Score=19.73 Aligned_cols=8 Identities=38% Similarity=0.692 Sum_probs=4.9
Q ss_pred eEEEEEeC
Q psy1529 168 RVLEVYGV 175 (175)
Q Consensus 168 ~~iEVw~~ 175 (175)
+.+|||++
T Consensus 47 dY~EVWg~ 54 (69)
T 2zdj_A 47 DYEEVWGI 54 (69)
T ss_dssp EEEEEEEE
T ss_pred Chhhhccc
Confidence 45677763
No 5
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=14.33 E-value=1.2e+02 Score=28.25 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=24.7
Q ss_pred ccccccHHHHHHhhcC-----CCCEEEEEEcCCCcEE
Q psy1529 29 EEHGCSLTTFYYRVEQ-----HEPTLLMIKTTNNEVF 60 (175)
Q Consensus 29 ~~hG~S~~~f~~~~~~-----~gptllvik~~~g~vf 60 (175)
..||..+..+++-... .+|++|+++|.+|.=.
T Consensus 360 ~~dGhD~~~l~~a~~~A~~~~~~PtlI~~~T~KG~G~ 396 (886)
T 2qtc_A 360 NRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGM 396 (886)
T ss_dssp CBGGGCHHHHHHHHHHHHHCCSSCEEEEEECCTTTTC
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCCEEEEEeeeecccc
Confidence 5799999888766532 4799999999987533
No 6
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=12.19 E-value=2.2e+02 Score=20.79 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.5
Q ss_pred cccCCCceEEEecccccccHHHHHHhhcC----------CC----CEEEEEEcCCCcEEEeeccC
Q psy1529 16 RITMYQPVLLYTTEEHGCSLTTFYYRVEQ----------HE----PTLLMIKTTNNEVFGAYCST 66 (175)
Q Consensus 16 ~~~~~~~~llyss~~hG~S~~~f~~~~~~----------~g----ptllvik~~~g~vfGay~~~ 66 (175)
.++..+-.+.-.+..|+.++..|++-+.. .. -.|+++.+.+...|-||++.
T Consensus 77 ~fknSk~VvF~~t~~d~E~L~sL~~~Mt~gfaGcvhF~~~~~ceiKvLiLlYs~~k~aflGfIPn 141 (166)
T 2ky6_A 77 LFRNSRMVQFHFTNKDLESLKGLYRIMGNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPY 141 (166)
T ss_dssp GGSSEEEEEEEECSSCHHHHHHHHHHHHHHEEEEEECCTTCCCSCCEEEEEECTTTCSEEEEEES
T ss_pred HhhcCeEEEEecCCCchHHHHHHHHHhhccceEEEECCCCCCcceEEEEEEEcCCcceeeeeccC
Confidence 34444455555566889989888887654 11 36888999999999999975
No 7
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=11.10 E-value=1.6e+02 Score=26.56 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=25.3
Q ss_pred CceEEEecccccccHHHHHHhhc-----CCCCEEEEEEcCCC
Q psy1529 21 QPVLLYTTEEHGCSLTTFYYRVE-----QHEPTLLMIKTTNN 57 (175)
Q Consensus 21 ~~~llyss~~hG~S~~~f~~~~~-----~~gptllvik~~~g 57 (175)
-|+-+. ..||..+..+++.+. ..+|++|+++|..|
T Consensus 231 G~~~~~--V~DG~D~~al~~Al~~A~~~~~~P~lI~~~T~kG 270 (700)
T 3rim_A 231 GWHVQE--VEGGENVVGIEEAIANAQAVTDRPSFIALRTVIG 270 (700)
T ss_dssp TCEEEE--EECTTCHHHHHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred CCeEEE--ECCCCCHHHHHHHHHHHHHcCCCCEEEEEEEEee
Confidence 466552 238999888866543 36899999999765
No 8
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=10.76 E-value=1.6e+02 Score=26.06 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCceEEEecccccccHHHHHHhhc----CCCCEEEEEEcCCCc
Q psy1529 20 YQPVLLYTTEEHGCSLTTFYYRVE----QHEPTLLMIKTTNNE 58 (175)
Q Consensus 20 ~~~~llyss~~hG~S~~~f~~~~~----~~gptllvik~~~g~ 58 (175)
.-|+-+ ..||.++..+.+.+. ..+|++|.++|.+|.
T Consensus 205 ~G~~~~---~vdGhd~~~l~~al~~A~~~~~P~lI~v~T~kG~ 244 (632)
T 3l84_A 205 QGFEVL---SINGHDYEEINKALEQAKKSTKPCLIIAKTTIAK 244 (632)
T ss_dssp TTCEEE---EEETTCHHHHHHHHHHHHTCSSCEEEEEECCTTT
T ss_pred cCCeEE---EEeeCCHHHHHHHHHHHHhCCCCEEEEEeeEeee
Confidence 345544 468888887765543 368999999998763
No 9
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=10.62 E-value=1.9e+02 Score=20.73 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=21.9
Q ss_pred CCCCEEEEEEcCCCcEEEeeccCCcccC
Q psy1529 44 QHEPTLLMIKTTNNEVFGAYCSTKWGER 71 (175)
Q Consensus 44 ~~gptllvik~~~g~vfGay~~~~w~~~ 71 (175)
-..|+|++|.+.+|.+.=+=...||-+.
T Consensus 38 ~n~ptLvlIYDe~G~lLW~qr~vP~le~ 65 (148)
T 3bqa_A 38 KQSPTMTLIYDENGQLLWAQRDVPWLMK 65 (148)
T ss_dssp TTCSCEEEEECTTSCEEEESSCCHHHHH
T ss_pred CCCCeEEEEEcCCCcEEEecCcchHHHh
Confidence 3579999999999999877666665544
No 10
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=9.86 E-value=2.3e+02 Score=25.33 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=22.3
Q ss_pred ccccccHHHHHHhhc-----CCCCEEEEEEcCCCc
Q psy1529 29 EEHGCSLTTFYYRVE-----QHEPTLLMIKTTNNE 58 (175)
Q Consensus 29 ~~hG~S~~~f~~~~~-----~~gptllvik~~~g~ 58 (175)
..||..+..+.+.+. ..+|++|.++|..|.
T Consensus 241 v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~T~kG~ 275 (690)
T 3m49_A 241 VEDGNDIEAIAKAIEEAKADEKRPTLIEVRTTIGF 275 (690)
T ss_dssp ESCTTCHHHHHHHHHHHHHCCSSCEEEEEECCTTT
T ss_pred EecCCCHHHHHHHHHHHHhcCCCCEEEEEEeeccc
Confidence 358888887765443 368999999998763
Done!