RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1529
(175 letters)
>gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing
proteins.
Length = 165
Score = 182 bits (463), Expect = 2e-59
Identities = 66/173 (38%), Positives = 90/173 (52%), Gaps = 20/173 (11%)
Query: 6 LFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQ-HEPTLLMIKTTNNEVFGAYC 64
L + S LP R Y LLY++ +HG SL T Y +VE PTLL+IK T+ EVFGAY
Sbjct: 9 LALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDTDGEVFGAYA 68
Query: 65 STKWGERNQKDERGNRTAYFGTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQ 124
S W + ++GTGE+FLF L P+ Y W G + ++
Sbjct: 69 SQAWRVSDH---------FYGTGESFLFQLNPKFVVYDWTGKNKYY--------YINGTP 111
Query: 125 KMITIGGGEGQ-AIWMDENIRYGKTDKCSTFNNPPLCV-GGDFEIRVLEVYGV 175
+ IGGG G +W+DE++ +G + C TF NPPL DF I +EV+G
Sbjct: 112 DSLPIGGGGGGFGLWIDEDLNHGSSSHCKTFGNPPLSTKQEDFLILDIEVWGF 164
>gnl|CDD|219457 pfam07534, TLD, TLD. This domain is predicted to be an enzyme and
is often found associated with pfam01476.
Length = 136
Score = 127 bits (321), Expect = 3e-38
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 19/153 (12%)
Query: 24 LLYTTEEHGCSLTTFYYRVEQHEPTLLMIKTTNNEVFGAYCSTKWGERNQKDERGNRTAY 83
LLY++ HG SL TF + + PTLL++K + VFGA+ S W +K +
Sbjct: 1 LLYSSSRHGSSLNTFLEKCDNKGPTLLIVKDDDGYVFGAFLSQPWKNSGKK--------F 52
Query: 84 FGTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEGQAIWMDENI 143
+G GE+FLFSL P+ Y W + N + A + GGG A+W+D ++
Sbjct: 53 YGDGESFLFSLSPKFKVYKW---------TGKNNAYFNAT-SGLGFGGGGKFALWIDSDL 102
Query: 144 RYGKTDKCSTFNNPPLCVGGD-FEIRVLEVYGV 175
+G + C TF NPPL + F+I LEV+G+
Sbjct: 103 EFGYSRHCGTFGNPPLSGSQERFKILDLEVWGL 135
>gnl|CDD|227471 COG5142, OXR1, Oxidation resistance protein [DNA replication,
recombination, and repair].
Length = 212
Score = 67.2 bits (164), Expect = 3e-14
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 13 LPVRITMYQP-VLLYTTEEHGCSLTTFYYRVEQHE------PTLLMIKTTNNEVFGAYCS 65
LP R LLY+ E+G SL TFY ++E +L + + ++FGA+
Sbjct: 49 LPDRYKYSTSWRLLYSLFENGFSLRTFYESFGENEWPFRRVGFVLACRDKDGDLFGAFFE 108
Query: 66 TKWGERNQKDERGNRTAYFGTGETFLFSLYPERAKYPWVGVEQETQVSH-----ANELFM 120
+ R R Y+G E FL+ A+ P + + +V+ +
Sbjct: 109 DRI--------RPARH-YYGRDEMFLWKA----ARRPADRL-ADKEVAVYPISGGKGFGI 154
Query: 121 AADQKMITIGGGEGQ-AIWMDENIRYGKTDKCSTFNNPPLCVGGD-FEIRVLEVYGV 175
+ G G G+ + +D+++ G++ TF N L G F I LE++ V
Sbjct: 155 YCTPDFLAFGCGGGRYGLLIDKSLLDGESHPVETFGNCLLSSKGHFFRIVYLELWLV 211
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 27.7 bits (62), Expect = 3.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 104 VGVEQETQVSHANELFMAAD 123
+GVEQ VSH +EL AAD
Sbjct: 842 LGVEQIVVVSHDDELVGAAD 861
>gnl|CDD|239949 cd04512, Ntn_Asparaginase_2_like, Ntn-hydrolase superfamily,
L-Asparaginase type 2-like enzymes. This family includes
Glycosylasparaginase, Taspase 1 and L-Asparaginase type
2 enzymes. Glycosylasparaginase catalyzes the hydrolysis
of the glycosylamide bond of asparagine-linked
glycoprotein. Taspase1 catalyzes the cleavage of the Mix
Lineage Leukemia (MLL) nuclear protein and transcription
factor TFIIA. L-Asparaginase type 2 hydrolyzes
L-asparagine to L-aspartate and ammonia. The proenzymes
of this family undergo autoproteolytic cleavage before a
threonine to generate alpha and beta subunits. The
threonine becomes the N-terminal residue of the beta
subunit and is the catalytic residue.
Length = 248
Score = 27.3 bits (61), Expect = 4.0
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 85 GTGETFLFSLYPERAKYPWVGVEQETQVSHANELFMAADQKMITIGGGEGQAIWMDENIR 144
G GE + ++ R VE Q A A +++ ++ GG+G I +D
Sbjct: 180 GHGEAIIRTVLARRV------VELMEQGMAAQAAAETAVEELGSLKGGQGGVIAVDSKGE 233
Query: 145 YGKTDKCSTFNNPPLCVG 162
+G + FN + V
Sbjct: 234 FG-----AAFNTAGMTVA 246
>gnl|CDD|150280 pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R).
SpoIIR is designated stage II sporulation protein R. A
comparative genome analysis of all sequenced genomes of
Firmicutes shows that the proteins are strictly
conserved among the sub-set of endospore-forming
species. SpoIIR is a signalling protein that links the
activation of sigma E to the transcriptional activity of
sigma F during sporulation.
Length = 132
Score = 25.6 bits (57), Expect = 9.4
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 14/34 (41%)
Query: 127 ITIGGGEGQAIWMDENIRYGKTDKCSTFNNPPLC 160
ITIG GEG W C F PPLC
Sbjct: 104 ITIGEGEGANWW------------CVLF--PPLC 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.436
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,851,287
Number of extensions: 764081
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 11
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)