RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1529
         (175 letters)



>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio}
          Length = 167

 Score =  128 bits (322), Expect = 2e-38
 Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 20/177 (11%)

Query: 1   MNPKKLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYYRVEQHE-PTLLMIKTTNNEV 59
           +  +++  L   LP R   Y   L ++T +HG S+ T Y  ++  + P LL+IK ++ ++
Sbjct: 8   LEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQI 67

Query: 60  FGAYCSTKWGERNQKDERGNRTAYFGTGETFLFSLYPERAKYPWVGVEQETQVSHANELF 119
           FGA  S  +              ++GTGETFLF+ YPE   Y W G          N  F
Sbjct: 68  FGALASEPFKVSEG---------FYGTGETFLFTFYPEFEAYKWTG---------DNLFF 109

Query: 120 MAADQKMITI-GGGEGQAIWMDENIRYGKTDKCSTFNNPPLCVGGDFEIRVLEVYGV 175
           +  D   +   GG     +W+D ++ +G+   C TF NP L +  DF ++ +E++  
Sbjct: 110 IKGDMDSLAFGGGSGEFGLWLDGDLYHGRNHSCKTFGNPMLSMKEDFFVQDIEIWSF 166


>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
           thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
           {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
           PDB: 1ozg_A* 1ozf_A*
          Length = 566

 Score = 25.9 bits (58), Expect = 7.5
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 95  YPERAKYPWVGVEQETQVSHANELFMAADQKMITIGGG 132
               +  P +G   +  +    +L   A   +  +G  
Sbjct: 180 VLPASGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLM 217


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,670,658
Number of extensions: 139444
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)