Query psy15291
Match_columns 295
No_of_seqs 299 out of 1854
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 17:20:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00190 Tryp_SPc Trypsin-like 100.0 1.8E-46 3.9E-51 313.3 23.4 230 56-291 1-232 (232)
2 KOG3627|consensus 100.0 9.8E-45 2.1E-49 308.0 22.5 237 52-293 9-255 (256)
3 smart00020 Tryp_SPc Trypsin-li 100.0 3.4E-43 7.4E-48 293.3 22.5 226 55-288 1-229 (229)
4 PF00089 Trypsin: Trypsin; In 100.0 2.5E-41 5.4E-46 280.1 20.1 219 56-288 1-220 (220)
5 COG5640 Secreted trypsin-like 100.0 7.2E-34 1.6E-38 236.8 15.7 234 52-293 29-279 (413)
6 PF03761 DUF316: Domain of unk 99.8 3.8E-19 8.3E-24 153.0 15.7 214 50-294 36-281 (282)
7 PF09342 DUF1986: Domain of un 99.6 8.4E-15 1.8E-19 117.3 12.4 116 63-186 12-131 (267)
8 COG3591 V8-like Glu-specific e 99.4 3.1E-12 6.6E-17 105.1 9.4 199 63-292 45-250 (251)
9 TIGR02037 degP_htrA_DO peripla 98.8 4.3E-08 9.4E-13 89.3 12.3 142 79-266 57-199 (428)
10 TIGR02038 protease_degS peripl 98.7 3.1E-07 6.7E-12 81.3 12.5 141 80-267 78-219 (351)
11 PRK10898 serine endoprotease; 98.6 8.1E-07 1.8E-11 78.6 13.5 141 80-267 78-219 (353)
12 PRK10139 serine endoprotease; 98.6 8.1E-07 1.8E-11 81.1 11.8 140 81-266 91-232 (455)
13 PF13365 Trypsin_2: Trypsin-li 98.5 1.5E-07 3.3E-12 69.8 5.7 21 82-102 1-22 (120)
14 PRK10942 serine endoprotease; 98.4 2.3E-06 4.9E-11 78.6 11.6 141 80-266 111-253 (473)
15 PF02395 Peptidase_S6: Immunog 97.3 0.00093 2E-08 64.5 8.2 65 84-170 69-133 (769)
16 PF00863 Peptidase_C4: Peptida 96.3 0.092 2E-06 43.4 11.6 149 85-283 36-186 (235)
17 COG0265 DegQ Trypsin-like seri 94.5 0.68 1.5E-05 41.1 11.6 146 79-269 71-217 (347)
18 PF00548 Peptidase_C3: 3C cyst 93.1 0.29 6.2E-06 38.7 5.9 75 74-166 19-93 (172)
19 PF00947 Pico_P2A: Picornaviru 90.3 0.21 4.6E-06 36.8 2.1 40 239-289 87-126 (127)
20 KOG1421|consensus 84.6 11 0.00024 36.1 10.1 76 77-171 81-159 (955)
21 PF05416 Peptidase_C37: Southa 83.6 4 8.6E-05 36.6 6.4 143 84-267 383-527 (535)
22 PF08192 Peptidase_S64: Peptid 76.5 20 0.00043 34.4 8.8 57 237-295 634-692 (695)
23 PF05580 Peptidase_S55: SpoIVB 74.2 4.1 8.8E-05 33.2 3.4 25 238-267 176-200 (218)
24 KOG3925|consensus 72.4 4.8 0.0001 35.2 3.6 9 258-266 280-288 (371)
25 PF05579 Peptidase_S32: Equine 66.4 3.8 8.2E-05 34.5 1.7 22 241-266 207-228 (297)
26 PF10459 Peptidase_S46: Peptid 64.2 3.9 8.4E-05 39.8 1.6 21 81-101 48-69 (698)
27 PF02907 Peptidase_S29: Hepati 62.8 5.3 0.00011 29.9 1.7 22 240-265 106-127 (148)
28 TIGR02860 spore_IV_B stage IV 59.0 12 0.00025 33.9 3.6 47 237-294 355-401 (402)
29 KOG2422|consensus 53.0 2.3 5E-05 39.6 -1.8 14 145-158 271-284 (665)
30 PF00944 Peptidase_S3: Alphavi 50.0 3.6 7.9E-05 30.7 -0.9 25 240-268 104-128 (158)
31 PF08496 Peptidase_S49_N: Pept 46.6 18 0.0004 28.0 2.5 6 69-74 134-139 (155)
32 KOG1230|consensus 46.2 7.2 0.00016 35.1 0.2 27 1-27 1-27 (521)
33 PF00949 Peptidase_S7: Peptida 40.4 17 0.00037 27.3 1.4 26 238-267 93-118 (132)
34 KOG4364|consensus 39.5 66 0.0014 30.9 5.2 13 254-266 556-568 (811)
35 PF10459 Peptidase_S46: Peptid 36.9 22 0.00047 34.8 1.9 35 225-266 619-653 (698)
36 KOG2967|consensus 34.3 1E+02 0.0022 26.9 5.3 10 37-46 68-77 (314)
37 KOG3925|consensus 31.2 83 0.0018 27.9 4.2 8 284-291 357-364 (371)
38 TIGR02841 spore_YyaC putative 29.9 30 0.00065 26.1 1.2 18 227-249 5-22 (140)
39 PF06866 DUF1256: Protein of u 29.9 31 0.00067 26.9 1.4 19 226-249 28-46 (163)
40 KOG2775|consensus 29.0 43 0.00093 28.9 2.1 10 130-139 184-193 (397)
41 PF10411 DsbC_N: Disulfide bon 24.3 33 0.00073 21.4 0.6 27 237-263 23-50 (57)
42 KOG2409|consensus 23.1 1.7E+02 0.0038 27.6 5.0 14 88-101 420-433 (647)
43 KOG1320|consensus 22.6 4.1E+02 0.0089 24.8 7.3 24 77-100 84-107 (473)
44 PLN03086 PRLI-interacting fact 22.5 2.3E+02 0.0051 27.1 5.9 11 84-94 151-161 (567)
45 KOG3165|consensus 21.7 1.4E+02 0.003 23.3 3.5 14 67-80 62-75 (195)
46 KOG2775|consensus 20.9 38 0.00082 29.2 0.4 7 80-86 138-144 (397)
47 KOG3709|consensus 20.4 82 0.0018 29.4 2.4 7 52-58 718-724 (778)
No 1
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=100.00 E-value=1.8e-46 Score=313.34 Aligned_cols=230 Identities=36% Similarity=0.605 Sum_probs=197.1
Q ss_pred cccccccCCCCCCcceeecccccccccceEEeeCCEEEEeCCCCCCCC-CceEEEEceeecCCccccccceecceeEEEE
Q psy15291 56 NIGIGCALPPPPPTVSRHTLYTLQFPQQDSMMTNFDMFTINLSKIGFL-ANLVAVFGEYDISGELEAKRSISKNVRRVIV 134 (295)
Q Consensus 56 i~~g~~~~~~~~p~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~-~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~ 134 (295)
|+||..+.+.++||++.+....+.+.|+||||+++||||||||+.... ..+.|++|........ ...+.+.|..+++
T Consensus 1 i~~G~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~--~~~~~~~v~~~~~ 78 (232)
T cd00190 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNE--GGGQVIKVKKVIV 78 (232)
T ss_pred CcCCeECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCC--CceEEEEEEEEEE
Confidence 689999999999999988655477899999999999999999998652 5688889987765421 2456688999999
Q ss_pred CCCCCCCCCCCceEEEEecCCCCCCCCceeeecCCCCC-CCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHH
Q psy15291 135 HRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDD-DFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEM 213 (295)
Q Consensus 135 hp~y~~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~-~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~ 213 (295)
||.|+.....+|||||+|++|+.++..+.|||||.... ...+..+.++|||........+..++...+.+++...|...
T Consensus 79 hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 158 (232)
T cd00190 79 HPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRA 158 (232)
T ss_pred CCCCCCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHHhhhh
Confidence 99999888899999999999999999999999999863 33578999999998775545677899999999999999987
Q ss_pred HhcCCCCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCCcHhHHhhh
Q psy15291 214 FQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTI 291 (295)
Q Consensus 214 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~~~~WI~~~ 291 (295)
+.. ...+.++++|+.......+.|.|||||||++.. +++|+|+||+|++..|...+.|.+|++|+.|++||+++
T Consensus 159 ~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~-~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~ 232 (232)
T cd00190 159 YSY---GGTITDNMLCAGGLEGGKDACQGDSGGPLVCND-NGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232 (232)
T ss_pred ccC---cccCCCceEeeCCCCCCCccccCCCCCcEEEEe-CCEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence 753 246789999998765457899999999999987 69999999999998898767799999999999999874
No 2
>KOG3627|consensus
Probab=100.00 E-value=9.8e-45 Score=307.98 Aligned_cols=237 Identities=38% Similarity=0.660 Sum_probs=197.3
Q ss_pred hhhhcccccccCCCCCCcceeeccccc-ccccceEEeeCCEEEEeCCCCCCCCC--ceEEEEceeecCCcccccc-ceec
Q psy15291 52 ALCRNIGIGCALPPPPPTVSRHTLYTL-QFPQQDSMMTNFDMFTINLSKIGFLA--NLVAVFGEYDISGELEAKR-SISK 127 (295)
Q Consensus 52 ~~~ri~~g~~~~~~~~p~~~~~~~~~~-~~~C~GtLIs~~~VLTAAhC~~~~~~--~~~v~~g~~~~~~~~~~~~-~~~~ 127 (295)
...||+||..+.++++||++.+..... .+.|+|+||+++||||||||+... . .+.|++|.+.......... ....
T Consensus 9 ~~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~-~~~~~~V~~G~~~~~~~~~~~~~~~~~ 87 (256)
T KOG3627|consen 9 PEGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGA-SASLYTVRLGEHDINLSVSEGEEQLVG 87 (256)
T ss_pred ccCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCC-CCcceEEEECccccccccccCchhhhc
Confidence 357999999999999999998766664 779999999999999999999873 2 7888899876554422211 2445
Q ss_pred ceeEEEECCCCCCCCCC-CceEEEEecCCCCCCCCceeeecCCCCC---CCCCCEEEEEecccccCC-CCCCCCcEEEEe
Q psy15291 128 NVRRVIVHRQYDAATFE-NDIALLELETPIAYDSHIVPICMPKDDD---DFTGRVATVSGWGRLKYG-GGVPSVLQEVQV 202 (295)
Q Consensus 128 ~v~~i~~hp~y~~~~~~-~DiALlkL~~~i~~s~~v~picL~~~~~---~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~ 202 (295)
.|.++++||+|+..... ||||||+|..++.|++.|+|||||.... ...+..|.++|||.+... ...+..|+.+.+
T Consensus 88 ~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v 167 (256)
T KOG3627|consen 88 DVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDV 167 (256)
T ss_pred eeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEE
Confidence 57788999999988877 9999999999999999999999986554 334589999999988754 245778999999
Q ss_pred eeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeCCC-CCCCCCCcEEeeC
Q psy15291 203 PVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRT 281 (295)
Q Consensus 203 ~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~-c~~~~~p~v~t~v 281 (295)
++++..+|...+... ..+++.+||++...+..++|+|||||||++.. +++|+++||+|||.. |...+.|++||+|
T Consensus 168 ~i~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~-~~~~~~~GivS~G~~~C~~~~~P~vyt~V 243 (256)
T KOG3627|consen 168 PIISNSECRRAYGGL---GTITDTMLCAGGPEGGKDACQGDSGGPLVCED-NGRWVLVGIVSWGSGGCGQPNYPGVYTRV 243 (256)
T ss_pred eEcChhHhcccccCc---cccCCCEEeeCccCCCCccccCCCCCeEEEee-CCcEEEEEEEEecCCCCCCCCCCeEEeEh
Confidence 999999999887531 14667789999766667899999999999987 458999999999988 9988889999999
Q ss_pred CCcHhHHhhhhC
Q psy15291 282 TYYKPWLQTITG 293 (295)
Q Consensus 282 ~~~~~WI~~~~~ 293 (295)
+.|.+||++.++
T Consensus 244 ~~y~~WI~~~~~ 255 (256)
T KOG3627|consen 244 SSYLDWIKENIG 255 (256)
T ss_pred HHhHHHHHHHhc
Confidence 999999999875
No 3
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=100.00 E-value=3.4e-43 Score=293.35 Aligned_cols=226 Identities=35% Similarity=0.626 Sum_probs=191.8
Q ss_pred hcccccccCCCCCCcceeecccccccccceEEeeCCEEEEeCCCCCCCC-CceEEEEceeecCCccccccceecceeEEE
Q psy15291 55 RNIGIGCALPPPPPTVSRHTLYTLQFPQQDSMMTNFDMFTINLSKIGFL-ANLVAVFGEYDISGELEAKRSISKNVRRVI 133 (295)
Q Consensus 55 ri~~g~~~~~~~~p~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~-~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~ 133 (295)
||+||..+.+.++||++.+......+.|+||||++++|||||||+.... ..+.|++|.+...... ....+.|..++
T Consensus 1 ~~~~G~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~~~~~~~---~~~~~~v~~~~ 77 (229)
T smart00020 1 RIVGGSEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSHDLSSGE---EGQVIKVSKVI 77 (229)
T ss_pred CccCCCcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcccCCCCC---CceEEeeEEEE
Confidence 6899999999999999987544447899999999999999999998764 6789999987654321 12668999999
Q ss_pred ECCCCCCCCCCCceEEEEecCCCCCCCCceeeecCCCCC-CCCCCEEEEEecccccC-CCCCCCCcEEEEeeeeChhhHH
Q psy15291 134 VHRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDD-DFTGRVATVSGWGRLKY-GGGVPSVLQEVQVPVIENNVCQ 211 (295)
Q Consensus 134 ~hp~y~~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~-~~~~~~~~~~Gwg~~~~-~~~~~~~l~~~~~~~~~~~~C~ 211 (295)
+||.|+.....+|||||+|++|+.+++.++|+|||.... ...+..+.++|||.... .......++...+.+++...|.
T Consensus 78 ~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~ 157 (229)
T smart00020 78 IHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR 157 (229)
T ss_pred ECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhh
Confidence 999999888899999999999999999999999998743 23578999999998763 2344668889999999999999
Q ss_pred HHHhcCCCCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCCcHhHH
Q psy15291 212 EMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWL 288 (295)
Q Consensus 212 ~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~~~~WI 288 (295)
..+.. ...+.+.++|++........|.|||||||++.. + +|+|+||+|+|..|...+.|.+|++|++|++||
T Consensus 158 ~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~-~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI 229 (229)
T smart00020 158 RAYSG---GGAITDNMLCAGGLEGGKDACQGDSGGPLVCND-G-RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229 (229)
T ss_pred hhhcc---ccccCCCcEeecCCCCCCcccCCCCCCeeEEEC-C-CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence 87643 135788999998766457899999999999986 4 999999999999998667899999999999998
No 4
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=100.00 E-value=2.5e-41 Score=280.09 Aligned_cols=219 Identities=34% Similarity=0.657 Sum_probs=187.5
Q ss_pred cccccccCCCCCCcceeecccccccccceEEeeCCEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEEC
Q psy15291 56 NIGIGCALPPPPPTVSRHTLYTLQFPQQDSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVH 135 (295)
Q Consensus 56 i~~g~~~~~~~~p~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~h 135 (295)
|+||..+.+.++||++.+....+.+.|+|+||+++||||||||+.. ...+.+.+|....... ....+.+.|..+++|
T Consensus 1 i~~g~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~-~~~~~v~~g~~~~~~~--~~~~~~~~v~~~~~h 77 (220)
T PF00089_consen 1 IVGGDPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDG-ASDIKVRLGTYSIRNS--DGSEQTIKVSKIIIH 77 (220)
T ss_dssp SBSSEECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTS-GGSEEEEESESBTTST--TTTSEEEEEEEEEEE
T ss_pred CCCCEECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccc-cccccccccccccccc--ccccccccccccccc
Confidence 6899999999999999886666588999999999999999999987 4678888998444332 222467899999999
Q ss_pred CCCCCCCCCCceEEEEecCCCCCCCCceeeecCCCCCC-CCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHH
Q psy15291 136 RQYDAATFENDIALLELETPIAYDSHIVPICMPKDDDD-FTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMF 214 (295)
Q Consensus 136 p~y~~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~~-~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~ 214 (295)
|.|+.....+|||||+|++|+.+.+.+.|+||+..... ..+..+.++||+.....+ ....++...+.+++...|...+
T Consensus 78 ~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~ 156 (220)
T PF00089_consen 78 PKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVPVVSRKTCRSSY 156 (220)
T ss_dssp TTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS-BTSBEEEEEEEEEEHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 99998888999999999999999999999999995542 358899999999876544 5568899999999999999874
Q ss_pred hcCCCCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCCcHhHH
Q psy15291 215 QTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWL 288 (295)
Q Consensus 215 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~~~~WI 288 (295)
. ..+.+.++|+... +..+.|.|||||||++.+. +|+||++++..|...+.|.+|++|+.|++||
T Consensus 157 ~-----~~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~----~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI 220 (220)
T PF00089_consen 157 N-----DNLTPNMICAGSS-GSGDACQGDSGGPLICNNN----YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI 220 (220)
T ss_dssp T-----TTSTTTEEEEETT-SSSBGGTTTTTSEEEETTE----EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred c-----ccccccccccccc-cccccccccccccccccee----eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence 3 3478999999865 5578999999999999752 7999999999999887899999999999998
No 5
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-34 Score=236.83 Aligned_cols=234 Identities=25% Similarity=0.331 Sum_probs=168.1
Q ss_pred hhhhcccccccCCCCCCcceeeccccc----ccccceEEeeCCEEEEeCCCCCCCC-CceEEEEceeecCCcccccccee
Q psy15291 52 ALCRNIGIGCALPPPPPTVSRHTLYTL----QFPQQDSMMTNFDMFTINLSKIGFL-ANLVAVFGEYDISGELEAKRSIS 126 (295)
Q Consensus 52 ~~~ri~~g~~~~~~~~p~~~~~~~~~~----~~~C~GtLIs~~~VLTAAhC~~~~~-~~~~v~~g~~~~~~~~~~~~~~~ 126 (295)
...||+||..|..++||.++....... .-+|+|+++..|||||||||+.... -+..+..+..+++.. ...+.
T Consensus 29 vs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~---Sq~~r 105 (413)
T COG5640 29 VSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDS---SQAER 105 (413)
T ss_pred cceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEeccccc---ccccC
Confidence 468999999999999997665433222 2379999999999999999998753 333344444455442 24566
Q ss_pred cceeEEEECCCCCCCCCCCceEEEEecCCCCCCCCceeeecCCCCC-----CCCCCEEEEEecccccCCC---CCC--CC
Q psy15291 127 KNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDD-----DFTGRVATVSGWGRLKYGG---GVP--SV 196 (295)
Q Consensus 127 ~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~-----~~~~~~~~~~Gwg~~~~~~---~~~--~~ 196 (295)
..|..++.|..|.+.++.||+|+++|.++...- .+ .+-.....+ ..........+|+.+.... ..+ ..
T Consensus 106 g~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~p-r~-ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~ 183 (413)
T COG5640 106 GHVRTIYVHEFYSPGNLGNDIAVLELARAASLP-RV-KITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTI 183 (413)
T ss_pred cceEEEeeecccccccccCcceeeccccccccc-hh-heeeccCcccceecccccccccceeeeeeeecCCCCCCCccce
Confidence 889999999999999999999999999866421 11 111111111 1113334456666544321 112 47
Q ss_pred cEEEEeeeeChhhHHHHHhcCC-CCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeCCC-CCCCCC
Q psy15291 197 LQEVQVPVIENNVCQEMFQTAG-HAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYL 274 (295)
Q Consensus 197 l~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~-c~~~~~ 274 (295)
+++..+..++...|...+.... ......-.-+|++... .++|+||||||++...++|+ .++||+|||.+ |+....
T Consensus 184 l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~~--~daCqGDSGGPi~~~g~~G~-vQ~GVvSwG~~~Cg~t~~ 260 (413)
T COG5640 184 LHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRPP--KDACQGDSGGPIFHKGEEGR-VQRGVVSWGDGGCGGTLI 260 (413)
T ss_pred eeeeeeeeechHHhhhhccccccCCCCCCccceecCCCC--cccccCCCCCceEEeCCCcc-EEEeEEEecCCCCCCCCc
Confidence 8999999999999998885221 1122222339998654 69999999999999875565 78899999987 999999
Q ss_pred CcEEeeCCCcHhHHhhhhC
Q psy15291 275 PGVYMRTTYYKPWLQTITG 293 (295)
Q Consensus 275 p~v~t~v~~~~~WI~~~~~ 293 (295)
|.|||+|+.|.+||..+|+
T Consensus 261 ~gVyT~vsny~~WI~a~~~ 279 (413)
T COG5640 261 PGVYTNVSNYQDWIAAMTN 279 (413)
T ss_pred ceeEEehhHHHHHHHHHhc
Confidence 9999999999999998774
No 6
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=99.82 E-value=3.8e-19 Score=152.97 Aligned_cols=214 Identities=17% Similarity=0.327 Sum_probs=139.8
Q ss_pred HHhhhhcccccccCCCCCCcceeecccc---cccccceEEeeCCEEEEeCCCCCCCCCce---------EEEEc------
Q psy15291 50 IEALCRNIGIGCALPPPPPTVSRHTLYT---LQFPQQDSMMTNFDMFTINLSKIGFLANL---------VAVFG------ 111 (295)
Q Consensus 50 ~~~~~ri~~g~~~~~~~~p~~~~~~~~~---~~~~C~GtLIs~~~VLTAAhC~~~~~~~~---------~v~~g------ 111 (295)
+....++..|..+...+.||++.+.... ..+.++|||||+||||||+||+......+ ...-+
T Consensus 36 ~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~~~~~~~C~~~~~~l~v 115 (282)
T PF03761_consen 36 LPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGEEFDNKKCEGNNNHLIV 115 (282)
T ss_pred CCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCcccccceeeCCCceEEe
Confidence 3345567888888889999988764332 23567999999999999999997432211 00000
Q ss_pred -e-----eec--CCccccccceecceeEEEECCCC----CCCCCCCceEEEEecCCCCCCCCceeeecCCCCCCC-CCCE
Q psy15291 112 -E-----YDI--SGELEAKRSISKNVRRVIVHRQY----DAATFENDIALLELETPIAYDSHIVPICMPKDDDDF-TGRV 178 (295)
Q Consensus 112 -~-----~~~--~~~~~~~~~~~~~v~~i~~hp~y----~~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~~~-~~~~ 178 (295)
. ..+ .............|.++++.... ......++++||+|+++ ++....|+|||...... .+..
T Consensus 116 P~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~~~~~~~~~ 193 (282)
T PF03761_consen 116 PEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLADSSTNWEKGDE 193 (282)
T ss_pred CHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeCCCccccccCce
Confidence 0 000 00000111223456666654333 33445689999999999 67789999999887654 3667
Q ss_pred EEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEE
Q psy15291 179 ATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWV 258 (295)
Q Consensus 179 ~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~ 258 (295)
+.++|+. ....+....+.+.....| ...+| .....|.||+||||+... +|+|+
T Consensus 194 ~~~yg~~-------~~~~~~~~~~~i~~~~~~--------------~~~~~-----~~~~~~~~d~Gg~lv~~~-~gr~t 246 (282)
T PF03761_consen 194 VDVYGFN-------STGKLKHRKLKITNCTKC--------------AYSIC-----TKQYSCKGDRGGPLVKNI-NGRWT 246 (282)
T ss_pred EEEeecC-------CCCeEEEEEEEEEEeecc--------------ceeEe-----cccccCCCCccCeEEEEE-CCCEE
Confidence 7788871 122445555555442221 11222 235789999999999987 89999
Q ss_pred EEEEEEeCCC-CCCCCCCcEEeeCCCcHhHHhhhhCC
Q psy15291 259 LAGTVSHGIK-CAAPYLPGVYMRTTYYKPWLQTITGV 294 (295)
Q Consensus 259 lvGi~S~g~~-c~~~~~p~v~t~v~~~~~WI~~~~~~ 294 (295)
|+||.+.+.. |... ...|.+|..|.+=|.+.+|+
T Consensus 247 lIGv~~~~~~~~~~~--~~~f~~v~~~~~~IC~ltGI 281 (282)
T PF03761_consen 247 LIGVGASGNYECNKN--NSYFFNVSWYQDEICELTGI 281 (282)
T ss_pred EEEEEccCCCccccc--ccEEEEHHHhhhhhccceec
Confidence 9999987753 4322 57899999999999999886
No 7
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=99.62 E-value=8.4e-15 Score=117.31 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=90.2
Q ss_pred CCCCCCcceeecccccccccceEEeeCCEEEEeCCCCCCCC---CceEEEEceeecCCccccccceecceeEEEECCCCC
Q psy15291 63 LPPPPPTVSRHTLYTLQFPQQDSMMTNFDMFTINLSKIGFL---ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYD 139 (295)
Q Consensus 63 ~~~~~p~~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~---~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~ 139 (295)
..-.|||.+.| ...|.|.|+|+||.++|||++..|+.+.. .-+.+.+|........+.+.+|.+.|+.+..-|
T Consensus 12 e~y~WPWlA~I-YvdG~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~--- 87 (267)
T PF09342_consen 12 EDYHWPWLADI-YVDGRYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP--- 87 (267)
T ss_pred ccccCcceeeE-EEcCeEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeecc---
Confidence 44459999976 67788999999999999999999998743 225778886554443456678888887776544
Q ss_pred CCCCCCceEEEEecCCCCCCCCceeeecCCCCCCC-CCCEEEEEeccc
Q psy15291 140 AATFENDIALLELETPIAYDSHIVPICMPKDDDDF-TGRVATVSGWGR 186 (295)
Q Consensus 140 ~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~~~-~~~~~~~~Gwg~ 186 (295)
..+++||.|++|+.|+.+|.|..||....+. ....|..+|-..
T Consensus 88 ----~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~ 131 (267)
T PF09342_consen 88 ----ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD 131 (267)
T ss_pred ----ccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence 3899999999999999999999999744332 356899988654
No 8
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
Probab=99.37 E-value=3.1e-12 Score=105.12 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=111.8
Q ss_pred CCCCCCc--ceeecccccccccceEEeeCCEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEE--CCC-
Q psy15291 63 LPPPPPT--VSRHTLYTLQFPQQDSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIV--HRQ- 137 (295)
Q Consensus 63 ~~~~~p~--~~~~~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~--hp~- 137 (295)
....+|| |+...+..|.+-|+++||+|+.||||+||+.................. ........+..+.. .|.
T Consensus 45 dt~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s~~~G~~~~~~~p~g~~---~~~~~~~~~~~~~~~~~~g~ 121 (251)
T COG3591 45 DTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVN---SDGGPFYGITKIEIRVYPGE 121 (251)
T ss_pred cCCCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEecCCCChhhhhhcCCccc---CCCCCCCceeeEEEEecCCc
Confidence 3455776 555678888887788999999999999999775421111111110000 01122223333222 333
Q ss_pred -CCCCCCCCceEEEEecCCCCCCCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhc
Q psy15291 138 -YDAATFENDIALLELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQT 216 (295)
Q Consensus 138 -y~~~~~~~DiALlkL~~~i~~s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~ 216 (295)
|.......|+..+.|+....+.+......++.......+....++||-..... .++. .+.|...
T Consensus 122 ~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~i~v~GYP~dk~~-----~~~~-------~e~t~~v--- 186 (251)
T COG3591 122 LYKEDGASYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPGDKPN-----IGTM-------WESTGKV--- 186 (251)
T ss_pred eeccCCceeeccHHHhccCCCccccccccccccccccccCceeEEEeccCCCCc-----ceeE-------eeeccee---
Confidence 33444567777777775555556666556665555555566889998532210 1110 0111111
Q ss_pred CCCCCCCCCCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCC-cHhHHhhhh
Q psy15291 217 AGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY-YKPWLQTIT 292 (295)
Q Consensus 217 ~~~~~~~~~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~-~~~WI~~~~ 292 (295)
..+....+- -..++|+|+||+|++.... +++||.+-|+.-.........+++.. +++||++.+
T Consensus 187 ----~~~~~~~l~-----y~~dT~pG~SGSpv~~~~~----~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~ 250 (251)
T COG3591 187 ----NSIKGNKLF-----YDADTLPGSSGSPVLISKD----EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNI 250 (251)
T ss_pred ----EEEecceEE-----EEecccCCCCCCceEecCc----eEEEEEecCCCcccccccCcceEecHHHHHHHHHhh
Confidence 011111111 1368999999999999753 89999998875322222344556555 779998875
No 9
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.83 E-value=4.3e-08 Score=89.26 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=84.3
Q ss_pred ccccceEEeeCC-EEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCC
Q psy15291 79 QFPQQDSMMTNF-DMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIA 157 (295)
Q Consensus 79 ~~~C~GtLIs~~-~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~ 157 (295)
...++|.+|+++ ||||++|++.+. ..+.|.+.. ...+.+.-+..++ ..|||||+++.+
T Consensus 57 ~~~GSGfii~~~G~IlTn~Hvv~~~-~~i~V~~~~-----------~~~~~a~vv~~d~-------~~DlAllkv~~~-- 115 (428)
T TIGR02037 57 RGLGSGVIISADGYILTNNHVVDGA-DEITVTLSD-----------GREFKAKLVGKDP-------RTDIAVLKIDAK-- 115 (428)
T ss_pred cceeeEEEECCCCEEEEcHHHcCCC-CeEEEEeCC-----------CCEEEEEEEEecC-------CCCEEEEEecCC--
Confidence 457999999976 999999999875 455555432 1123344343443 379999999865
Q ss_pred CCCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCC
Q psy15291 158 YDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQR 237 (295)
Q Consensus 158 ~s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~ 237 (295)
..+.++.|.+......++.++++|+.... ...+....+.-..... .. ......++=. +.
T Consensus 116 --~~~~~~~l~~~~~~~~G~~v~aiG~p~g~-----~~~~t~G~vs~~~~~~----~~-----~~~~~~~i~t-----da 174 (428)
T TIGR02037 116 --KNLPVIKLGDSDKLRVGDWVLAIGNPFGL-----GQTVTSGIVSALGRSG----LG-----IGDYENFIQT-----DA 174 (428)
T ss_pred --CCceEEEccCCCCCCCCCEEEEEECCCcC-----CCcEEEEEEEecccCc----cC-----CCCccceEEE-----CC
Confidence 24567888766554579999999985321 1122222222111100 00 0000112211 13
Q ss_pred CCCcCCCCCceEEEeeCCeEEEEEEEEeC
Q psy15291 238 DSCEGDSGGPLMIEREDGHWVLAGTVSHG 266 (295)
Q Consensus 238 ~~C~gdsGgPl~~~~~~g~~~lvGi~S~g 266 (295)
..-+|.|||||+.. +| .++||++..
T Consensus 175 ~i~~GnSGGpl~n~--~G--~viGI~~~~ 199 (428)
T TIGR02037 175 AINPGNSGGPLVNL--RG--EVIGINTAI 199 (428)
T ss_pred CCCCCCCCCceECC--CC--eEEEEEeEE
Confidence 45679999999865 45 799998764
No 10
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.68 E-value=3.1e-07 Score=81.27 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=80.1
Q ss_pred cccceEEeeCC-EEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCCC
Q psy15291 80 FPQQDSMMTNF-DMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAY 158 (295)
Q Consensus 80 ~~C~GtLIs~~-~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~ 158 (295)
...+|.+|+++ +|||++|.+.+. ..+.|.+.+ +..+...-+..+| ..|||||+++.+-
T Consensus 78 ~~GSG~vi~~~G~IlTn~HVV~~~-~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvlkv~~~~-- 136 (351)
T TIGR02038 78 GLGSGVIMSKEGYILTNYHVIKKA-DQIVVALQD-----------GRKFEAELVGSDP-------LTDLAVLKIEGDN-- 136 (351)
T ss_pred ceEEEEEEeCCeEEEecccEeCCC-CEEEEEECC-----------CCEEEEEEEEecC-------CCCEEEEEecCCC--
Confidence 35899999976 999999999764 445555432 1223344344443 4899999998542
Q ss_pred CCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCCC
Q psy15291 159 DSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRD 238 (295)
Q Consensus 159 s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~ 238 (295)
+.++.|........++.+.++|+.... ........+..+... .+. ..-....+=. +..
T Consensus 137 ---~~~~~l~~s~~~~~G~~V~aiG~P~~~-----~~s~t~GiIs~~~r~----~~~-----~~~~~~~iqt-----da~ 194 (351)
T TIGR02038 137 ---LPTIPVNLDRPPHVGDVVLAIGNPYNL-----GQTITQGIISATGRN----GLS-----SVGRQNFIQT-----DAA 194 (351)
T ss_pred ---CceEeccCcCccCCCCEEEEEeCCCCC-----CCcEEEEEEEeccCc----ccC-----CCCcceEEEE-----CCc
Confidence 334555444333469999999985321 112222222211110 000 0000111211 235
Q ss_pred CCcCCCCCceEEEeeCCeEEEEEEEEeCC
Q psy15291 239 SCEGDSGGPLMIEREDGHWVLAGTVSHGI 267 (295)
Q Consensus 239 ~C~gdsGgPl~~~~~~g~~~lvGi~S~g~ 267 (295)
..+|.|||||+.. +| .|+||++...
T Consensus 195 i~~GnSGGpl~n~--~G--~vIGI~~~~~ 219 (351)
T TIGR02038 195 INAGNSGGALINT--NG--ELVGINTASF 219 (351)
T ss_pred cCCCCCcceEECC--CC--eEEEEEeeee
Confidence 5689999999976 34 7999997643
No 11
>PRK10898 serine endoprotease; Provisional
Probab=98.63 E-value=8.1e-07 Score=78.62 Aligned_cols=141 Identities=15% Similarity=0.099 Sum_probs=79.3
Q ss_pred cccceEEeeCC-EEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCCC
Q psy15291 80 FPQQDSMMTNF-DMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAY 158 (295)
Q Consensus 80 ~~C~GtLIs~~-~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~ 158 (295)
..-+|.+|+++ +|||++|-+.+. ..+.|.+.+ +..+...-+..+| .+|||||+++.+
T Consensus 78 ~~GSGfvi~~~G~IlTn~HVv~~a-~~i~V~~~d-----------g~~~~a~vv~~d~-------~~DlAvl~v~~~--- 135 (353)
T PRK10898 78 TLGSGVIMDQRGYILTNKHVINDA-DQIIVALQD-----------GRVFEALLVGSDS-------LTDLAVLKINAT--- 135 (353)
T ss_pred ceeeEEEEeCCeEEEecccEeCCC-CEEEEEeCC-----------CCEEEEEEEEEcC-------CCCEEEEEEcCC---
Confidence 45889999976 999999999764 556665532 1123333344443 389999999754
Q ss_pred CCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCCC
Q psy15291 159 DSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRD 238 (295)
Q Consensus 159 s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~ 238 (295)
.+.++.|........++.+.++|+..... .......+.-... .... ..-...++-. +..
T Consensus 136 --~l~~~~l~~~~~~~~G~~V~aiG~P~g~~-----~~~t~Giis~~~r----~~~~-----~~~~~~~iqt-----da~ 194 (353)
T PRK10898 136 --NLPVIPINPKRVPHIGDVVLAIGNPYNLG-----QTITQGIISATGR----IGLS-----PTGRQNFLQT-----DAS 194 (353)
T ss_pred --CCCeeeccCcCcCCCCCEEEEEeCCCCcC-----CCcceeEEEeccc----cccC-----CccccceEEe-----ccc
Confidence 13345554443334689999999853211 1111111111110 0000 0000112211 235
Q ss_pred CCcCCCCCceEEEeeCCeEEEEEEEEeCC
Q psy15291 239 SCEGDSGGPLMIEREDGHWVLAGTVSHGI 267 (295)
Q Consensus 239 ~C~gdsGgPl~~~~~~g~~~lvGi~S~g~ 267 (295)
..+|.|||||+.. +| .++||++...
T Consensus 195 i~~GnSGGPl~n~--~G--~vvGI~~~~~ 219 (353)
T PRK10898 195 INHGNSGGALVNS--LG--ELMGINTLSF 219 (353)
T ss_pred cCCCCCcceEECC--CC--eEEEEEEEEe
Confidence 5679999999875 44 7999998643
No 12
>PRK10139 serine endoprotease; Provisional
Probab=98.56 E-value=8.1e-07 Score=81.14 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=82.7
Q ss_pred ccceEEeeC--CEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCCC
Q psy15291 81 PQQDSMMTN--FDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAY 158 (295)
Q Consensus 81 ~C~GtLIs~--~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~ 158 (295)
..+|.+|++ .||||++|.+.+. ..+.|.+.+ +..+...-+...| ..|||||+++.+-
T Consensus 91 ~GSG~ii~~~~g~IlTn~HVv~~a-~~i~V~~~d-----------g~~~~a~vvg~D~-------~~DlAvlkv~~~~-- 149 (455)
T PRK10139 91 LGSGVIIDAAKGYVLTNNHVINQA-QKISIQLND-----------GREFDAKLIGSDD-------QSDIALLQIQNPS-- 149 (455)
T ss_pred eEEEEEEECCCCEEEeChHHhCCC-CEEEEEECC-----------CCEEEEEEEEEcC-------CCCEEEEEecCCC--
Confidence 588999974 6999999999765 556666532 1123444444443 4899999998542
Q ss_pred CCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCCC
Q psy15291 159 DSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRD 238 (295)
Q Consensus 159 s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~ 238 (295)
.+.++.|.+......++.+.++|+.... ..... .-+++...= .... ..-....+-+ +..
T Consensus 150 --~l~~~~lg~s~~~~~G~~V~aiG~P~g~-----~~tvt---~GivS~~~r-~~~~-----~~~~~~~iqt-----da~ 208 (455)
T PRK10139 150 --KLTQIAIADSDKLRVGDFAVAVGNPFGL-----GQTAT---SGIISALGR-SGLN-----LEGLENFIQT-----DAS 208 (455)
T ss_pred --CCceeEecCccccCCCCEEEEEecCCCC-----CCceE---EEEEccccc-cccC-----CCCcceEEEE-----CCc
Confidence 3456777665554469999999974211 11122 223321100 0000 0000122222 245
Q ss_pred CCcCCCCCceEEEeeCCeEEEEEEEEeC
Q psy15291 239 SCEGDSGGPLMIEREDGHWVLAGTVSHG 266 (295)
Q Consensus 239 ~C~gdsGgPl~~~~~~g~~~lvGi~S~g 266 (295)
..+|.|||||+... | .|+||++..
T Consensus 209 in~GnSGGpl~n~~--G--~vIGi~~~~ 232 (455)
T PRK10139 209 INRGNSGGALLNLN--G--ELIGINTAI 232 (455)
T ss_pred cCCCCCcceEECCC--C--eEEEEEEEE
Confidence 66899999999863 4 799999874
No 13
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=98.54 E-value=1.5e-07 Score=69.77 Aligned_cols=21 Identities=5% Similarity=-0.083 Sum_probs=19.3
Q ss_pred cceEEeeCC-EEEEeCCCCCCC
Q psy15291 82 QQDSMMTNF-DMFTINLSKIGF 102 (295)
Q Consensus 82 C~GtLIs~~-~VLTAAhC~~~~ 102 (295)
|+|.+|+++ +|||||||+...
T Consensus 1 GTGf~i~~~g~ilT~~Hvv~~~ 22 (120)
T PF13365_consen 1 GTGFLIGPDGYILTAAHVVEDW 22 (120)
T ss_dssp EEEEEEETTTEEEEEHHHHTCC
T ss_pred CEEEEEcCCceEEEchhheecc
Confidence 689999999 999999999864
No 14
>PRK10942 serine endoprotease; Provisional
Probab=98.44 E-value=2.3e-06 Score=78.63 Aligned_cols=141 Identities=17% Similarity=0.143 Sum_probs=80.8
Q ss_pred cccceEEeeC--CEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCC
Q psy15291 80 FPQQDSMMTN--FDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIA 157 (295)
Q Consensus 80 ~~C~GtLIs~--~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~ 157 (295)
...+|.+|++ .+|||++|.+.+. ..+.|.+.+ +..+...-+..+| ..|||||+++.+-
T Consensus 111 ~~GSG~ii~~~~G~IlTn~HVv~~a-~~i~V~~~d-----------g~~~~a~vv~~D~-------~~DlAvlki~~~~- 170 (473)
T PRK10942 111 ALGSGVIIDADKGYVVTNNHVVDNA-TKIKVQLSD-----------GRKFDAKVVGKDP-------RSDIALIQLQNPK- 170 (473)
T ss_pred ceEEEEEEECCCCEEEeChhhcCCC-CEEEEEECC-----------CCEEEEEEEEecC-------CCCEEEEEecCCC-
Confidence 4689999985 5999999999765 556666542 1123334344444 4899999997533
Q ss_pred CCCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCC
Q psy15291 158 YDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQR 237 (295)
Q Consensus 158 ~s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~ 237 (295)
.+.++.|.+......++.+.++|+.... ........+.-+... ... ..-...++-. +.
T Consensus 171 ---~l~~~~lg~s~~l~~G~~V~aiG~P~g~-----~~tvt~GiVs~~~r~----~~~-----~~~~~~~iqt-----da 228 (473)
T PRK10942 171 ---NLTAIKMADSDALRVGDYTVAIGNPYGL-----GETVTSGIVSALGRS----GLN-----VENYENFIQT-----DA 228 (473)
T ss_pred ---CCceeEecCccccCCCCEEEEEcCCCCC-----CcceeEEEEEEeecc----cCC-----cccccceEEe-----cc
Confidence 2346667655544468999999874211 111111222111110 000 0000122222 13
Q ss_pred CCCcCCCCCceEEEeeCCeEEEEEEEEeC
Q psy15291 238 DSCEGDSGGPLMIEREDGHWVLAGTVSHG 266 (295)
Q Consensus 238 ~~C~gdsGgPl~~~~~~g~~~lvGi~S~g 266 (295)
..-+|.|||||+... | .|+||.+..
T Consensus 229 ~i~~GnSGGpL~n~~--G--eviGI~t~~ 253 (473)
T PRK10942 229 AINRGNSGGALVNLN--G--ELIGINTAI 253 (473)
T ss_pred ccCCCCCcCccCCCC--C--eEEEEEEEE
Confidence 455799999999763 4 799999863
No 15
>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.
Probab=97.29 E-value=0.00093 Score=64.49 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=37.1
Q ss_pred eEEeeCCEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCCCCCCce
Q psy15291 84 DSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163 (295)
Q Consensus 84 GtLIs~~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~s~~v~ 163 (295)
+|||+|++|+|++|=...+ -.|.+|.... ..+.+..--.|+. .|+.+-||++=+. .+.
T Consensus 69 aTLigpqYiVSV~HN~~gy---~~v~FG~~g~---------~~Y~iV~RNn~~~-------~Df~~pRLnK~VT---Eva 126 (769)
T PF02395_consen 69 ATLIGPQYIVSVKHNGKGY---NSVSFGNEGQ---------NTYKIVDRNNYPS-------GDFHMPRLNKFVT---EVA 126 (769)
T ss_dssp -EEEETTEEEBETTG-TSC---CEECESCSST---------CEEEEEEEEBETT-------STEBEEEESS------SS-
T ss_pred EEEecCCeEEEEEccCCCc---CceeecccCC---------ceEEEEEccCCCC-------cccceeecCceEE---EEe
Confidence 8999999999999998322 3555665322 2344444444443 6999999998654 466
Q ss_pred eeecCCC
Q psy15291 164 PICMPKD 170 (295)
Q Consensus 164 picL~~~ 170 (295)
|+.+...
T Consensus 127 P~~~t~~ 133 (769)
T PF02395_consen 127 PAEMTTA 133 (769)
T ss_dssp ---BBSS
T ss_pred ccccccc
Confidence 7766555
No 16
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification.; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.
Probab=96.34 E-value=0.092 Score=43.41 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=68.8
Q ss_pred EEeeCCEEEEeCCCCCCCCCceEEEE--ceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCCCCCCc
Q psy15291 85 SMMTNFDMFTINLSKIGFLANLVAVF--GEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHI 162 (295)
Q Consensus 85 tLIs~~~VLTAAhC~~~~~~~~~v~~--g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~s~~v 162 (295)
-+.-..||||-+|-|......+.+.. |.+.+.+. .++.+||- ...||.||+|..+++ ++-
T Consensus 36 gigyG~~iItn~HLf~~nng~L~i~s~hG~f~v~nt-----------~~lkv~~i-----~~~DiviirmPkDfp--Pf~ 97 (235)
T PF00863_consen 36 GIGYGSYIITNAHLFKRNNGELTIKSQHGEFTVPNT-----------TQLKVHPI-----EGRDIVIIRMPKDFP--PFP 97 (235)
T ss_dssp EEEETTEEEEEGGGGSSTTCEEEEEETTEEEEECEG-----------GGSEEEE------TCSSEEEEE--TTS------
T ss_pred EEeECCEEEEChhhhccCCCeEEEEeCceEEEcCCc-----------cccceEEe-----CCccEEEEeCCcccC--Ccc
Confidence 45678999999999987766666654 33443321 12223332 258999999988664 222
Q ss_pred eeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCCCCCcC
Q psy15291 163 VPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEG 242 (295)
Q Consensus 163 ~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~g 242 (295)
+-+++- .+..++.+.++|-..... .......+. ..+... .. .+... ...++=.|
T Consensus 98 ~kl~FR---~P~~~e~v~mVg~~fq~k--~~~s~vSes--S~i~p~-~~-------------~~fWk-----HwIsTk~G 151 (235)
T PF00863_consen 98 QKLKFR---APKEGERVCMVGSNFQEK--SISSTVSES--SWIYPE-EN-------------SHFWK-----HWISTKDG 151 (235)
T ss_dssp S---B-------TT-EEEEEEEECSSC--CCEEEEEEE--EEEEEE-TT-------------TTEEE-----E-C---TT
T ss_pred hhhhcc---CCCCCCEEEEEEEEEEcC--CeeEEECCc--eEEeec-CC-------------CCeeE-----EEecCCCC
Confidence 222221 112366777777643321 111111111 111110 00 00100 01344468
Q ss_pred CCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCC
Q psy15291 243 DSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283 (295)
Q Consensus 243 dsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~ 283 (295)
|=|.||+... +| .+|||.|.+..-.. -.+|+.+..
T Consensus 152 ~CG~PlVs~~-Dg--~IVGiHsl~~~~~~---~N~F~~f~~ 186 (235)
T PF00863_consen 152 DCGLPLVSTK-DG--KIVGIHSLTSNTSS---RNYFTPFPD 186 (235)
T ss_dssp -TT-EEEETT-T----EEEEEEEEETTTS---SEEEEE--T
T ss_pred ccCCcEEEcC-CC--cEEEEEcCccCCCC---eEEEEcCCH
Confidence 8899999976 77 79999997654332 347887765
No 17
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.68 Score=41.08 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=78.6
Q ss_pred ccccceEEee-CCEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCC
Q psy15291 79 QFPQQDSMMT-NFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIA 157 (295)
Q Consensus 79 ~~~C~GtLIs-~~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~ 157 (295)
....+|.+++ ..+|||-.|=+.. ...+.+.+.+ +..+...-+-.. ...|+|+++.+..-.
T Consensus 71 ~~~gSg~i~~~~g~ivTn~hVi~~-a~~i~v~l~d-----------g~~~~a~~vg~d-------~~~dlavlki~~~~~ 131 (347)
T COG0265 71 EGLGSGFIISSDGYIVTNNHVIAG-AEEITVTLAD-----------GREVPAKLVGKD-------PISDLAVLKIDGAGG 131 (347)
T ss_pred cccccEEEEcCCeEEEecceecCC-cceEEEEeCC-----------CCEEEEEEEecC-------CccCEEEEEeccCCC
Confidence 3568899998 8899999999987 5666665511 122233333222 348999999986532
Q ss_pred CCCCceeeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeecCCCC
Q psy15291 158 YDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQR 237 (295)
Q Consensus 158 ~s~~v~picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~ 237 (295)
+..+.+.+......++.+..+|-.... ........+...... +-... .. ..+.+ ..+.
T Consensus 132 ----~~~~~~~~s~~l~vg~~v~aiGnp~g~-----~~tvt~Givs~~~r~-~v~~~------~~-~~~~I-----qtdA 189 (347)
T COG0265 132 ----LPVIALGDSDKLRVGDVVVAIGNPFGL-----GQTVTSGIVSALGRT-GVGSA------GG-YVNFI-----QTDA 189 (347)
T ss_pred ----CceeeccCCCCcccCCEEEEecCCCCc-----ccceeccEEeccccc-cccCc------cc-ccchh-----hccc
Confidence 223334333332246666666643221 111111222222221 11000 00 11111 1124
Q ss_pred CCCcCCCCCceEEEeeCCeEEEEEEEEeCCCC
Q psy15291 238 DSCEGDSGGPLMIEREDGHWVLAGTVSHGIKC 269 (295)
Q Consensus 238 ~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c 269 (295)
..++|.||||++... | .++||.+.....
T Consensus 190 ain~gnsGgpl~n~~--g--~~iGint~~~~~ 217 (347)
T COG0265 190 AINPGNSGGPLVNID--G--EVVGINTAIIAP 217 (347)
T ss_pred ccCCCCCCCceEcCC--C--cEEEEEEEEecC
Confidence 678999999999864 4 799999876543
No 18
>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....
Probab=93.09 E-value=0.29 Score=38.74 Aligned_cols=75 Identities=11% Similarity=0.028 Sum_probs=40.7
Q ss_pred cccccccccceEEeeCCEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEec
Q psy15291 74 TLYTLQFPQQDSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELE 153 (295)
Q Consensus 74 ~~~~~~~~C~GtLIs~~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~ 153 (295)
....+.|.|.|..|..+|.|--.|.- ....+.++... +.+...+.. .+......||+|++|+
T Consensus 19 ~~~~g~~t~l~~gi~~~~~lvp~H~~----~~~~i~i~g~~------------~~~~d~~~l--v~~~~~~~Dl~~v~l~ 80 (172)
T PF00548_consen 19 TTGKGEFTMLALGIYDRYFLVPTHEE----PEDTIYIDGVE------------YKVDDSVVL--VDRDGVDTDLTLVKLP 80 (172)
T ss_dssp EETTEEEEEEEEEEEBTEEEEEGGGG----GCSEEEETTEE------------EEEEEEEEE--EETTSSEEEEEEEEEE
T ss_pred EeCCceEEEecceEeeeEEEEECcCC----CcEEEEECCEE------------EEeeeeEEE--ecCCCcceeEEEEEcc
Confidence 34566777888899999999999922 22233332111 111111111 1111234699999998
Q ss_pred CCCCCCCCceeee
Q psy15291 154 TPIAYDSHIVPIC 166 (295)
Q Consensus 154 ~~i~~s~~v~pic 166 (295)
..-.|-+-.+-++
T Consensus 81 ~~~kfrDIrk~~~ 93 (172)
T PF00548_consen 81 RNPKFRDIRKFFP 93 (172)
T ss_dssp SSS-B--GGGGSB
T ss_pred CCcccCchhhhhc
Confidence 8777754444444
No 19
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=90.32 E-value=0.21 Score=36.77 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCcCCCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCCcHhHHh
Q psy15291 239 SCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQ 289 (295)
Q Consensus 239 ~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~~~~WI~ 289 (295)
.-+||-||+|.|.. | ++||++.|.. .-.-|++|+.+ .|++
T Consensus 87 ~~PGdCGg~L~C~H--G---ViGi~Tagg~-----g~VaF~dir~~-~~~e 126 (127)
T PF00947_consen 87 AEPGDCGGILRCKH--G---VIGIVTAGGE-----GHVAFADIRDL-LWLE 126 (127)
T ss_dssp SSTT-TCSEEEETT--C---EEEEEEEEET-----TEEEEEECCCG-STTS
T ss_pred CCCCCCCceeEeCC--C---eEEEEEeCCC-----ceEEEEechhh-heec
Confidence 34799999999985 3 9999998732 23579999874 4543
No 20
>KOG1421|consensus
Probab=84.63 E-value=11 Score=36.08 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=42.6
Q ss_pred ccccccceEEeeC--CEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecC
Q psy15291 77 TLQFPQQDSMMTN--FDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELET 154 (295)
Q Consensus 77 ~~~~~C~GtLIs~--~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~ 154 (295)
.+.+.-+|.++++ .++||+-|-+.-.+-.-.+.+-.+ +.+-+.|.|.. .-||+.+++.+.
T Consensus 81 ag~~~atgfvvd~~~gyiLtnrhvv~pgP~va~avf~n~----------------ee~ei~pvyrD--pVhdfGf~r~dp 142 (955)
T KOG1421|consen 81 AGESEATGFVVDKKLGYILTNRHVVAPGPFVASAVFDNH----------------EEIEIYPVYRD--PVHDFGFFRYDP 142 (955)
T ss_pred ccccceeEEEEecccceEEEeccccCCCCceeEEEeccc----------------ccCCcccccCC--chhhcceeecCh
Confidence 3444456788876 579999999876543333332211 11223344432 237888888765
Q ss_pred C-CCCCCCceeeecCCCC
Q psy15291 155 P-IAYDSHIVPICMPKDD 171 (295)
Q Consensus 155 ~-i~~s~~v~picL~~~~ 171 (295)
. +.| ..+.-+||....
T Consensus 143 s~ir~-s~vt~i~lap~~ 159 (955)
T KOG1421|consen 143 STIRF-SIVTEICLAPEL 159 (955)
T ss_pred hhcce-eeeeccccCccc
Confidence 3 333 356777876554
No 21
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=83.56 E-value=4 Score=36.63 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred eEEeeCCEEEEeCCCCCCCCCceEEEEceeecCCccccccceecceeEEEECCCCCCCCCCCceEEEEecCCCCCCCCce
Q psy15291 84 DSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163 (295)
Q Consensus 84 GtLIs~~~VLTAAhC~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DiALlkL~~~i~~s~~v~ 163 (295)
|--+||...+|+.|-+.... .-.+| .++.+|.+|.. -++.-+++..|+. +.+.
T Consensus 383 GfWVS~~lfITttHViP~g~---~E~FG---------------v~i~~i~vh~s-------GeF~~~rFpk~iR--PDvt 435 (535)
T PF05416_consen 383 GFWVSPTLFITTTHVIPPGA---KEAFG---------------VPISQIQVHKS-------GEFCRFRFPKPIR--PDVT 435 (535)
T ss_dssp EEESSSSEEEEEGGGS-STT---SEETT---------------EECGGEEEEEE-------TTEEEEEESS-SS--TTS-
T ss_pred eeeecceEEEEeeeecCCcc---hhhhC---------------CChhHeEEeec-------cceEEEecCCCCC--CCcc
Confidence 67899999999999986432 11222 34555666642 5677788887775 2333
Q ss_pred eeecCCCCCCCCCCEEEEEecccccCCCCCCCCcEEEEeeeeChhhHHHHHhcCCCCCCCCCCeEEeeec--CCCCCCCc
Q psy15291 164 PICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYA--NGQRDSCE 241 (295)
Q Consensus 164 picL~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~--~~~~~~C~ 241 (295)
-.-|-...+ .+..|.+.-=-. +..|...-+.+-....-.-... ...-...||=++.. .-+-.+-+
T Consensus 436 gmiLEeGap--EGtV~siLiKR~-------sGEllpLAvRMgt~AsmkIqgr----~v~GQ~GMLLTGaNAK~mDLGT~P 502 (535)
T PF05416_consen 436 GMILEEGAP--EGTVCSILIKRP-------SGELLPLAVRMGTHASMKIQGR----TVHGQMGMLLTGANAKGMDLGTIP 502 (535)
T ss_dssp --EE-SS----TT-EEEEEEE-T-------TSBEEEEEEEEEEEEEEEETTE----EEEEEEEEETTSTT-SSTTTS--T
T ss_pred ceeeccCCC--CceEEEEEEEcC-------CccchhhhhhhccceeEEEcce----eecceeeeeeecCCccccccCCCC
Confidence 333322221 366666543211 1122222222222111000000 00011223333221 11245789
Q ss_pred CCCCCceEEEeeCCeEEEEEEEEeCC
Q psy15291 242 GDSGGPLMIEREDGHWVLAGTVSHGI 267 (295)
Q Consensus 242 gdsGgPl~~~~~~g~~~lvGi~S~g~ 267 (295)
||-|.|.+... ++-|+++||.....
T Consensus 503 GDCGcPYvyKr-gNd~VV~GVH~AAt 527 (535)
T PF05416_consen 503 GDCGCPYVYKR-GNDWVVIGVHAAAT 527 (535)
T ss_dssp TGTT-EEEEEE-TTEEEEEEEEEEE-
T ss_pred CCCCCceeeec-CCcEEEEEEEehhc
Confidence 99999999987 88999999987643
No 22
>PF08192 Peptidase_S64: Peptidase family S64; InterPro: IPR012985 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1 [] and belongs to MEROPS petidase family S64 (clan PA). The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids, and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS peptidase family S1) and to have a typical trypsin-like catalytic triad [].
Probab=76.46 E-value=20 Score=34.38 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=39.6
Q ss_pred CCCCcCCCCCceEEEeeC--CeEEEEEEEEeCCCCCCCCCCcEEeeCCCcHhHHhhhhCCC
Q psy15291 237 RDSCEGDSGGPLMIERED--GHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTITGVQ 295 (295)
Q Consensus 237 ~~~C~gdsGgPl~~~~~~--g~~~lvGi~S~g~~c~~~~~p~v~t~v~~~~~WI~~~~~~~ 295 (295)
.-.-.||||+=++...++ --.-++|++. ++++.. ..-++||.+...++=+++++|++
T Consensus 634 ~Fa~~GDSGS~VLtk~~d~~~gLgvvGMlh-sydge~-kqfglftPi~~il~rl~~vT~I~ 692 (695)
T PF08192_consen 634 AFASGGDSGSWVLTKLEDNNKGLGVVGMLH-SYDGEQ-KQFGLFTPINEILDRLEEVTGIK 692 (695)
T ss_pred cccCCCCcccEEEecccccccCceeeEEee-ecCCcc-ceeeccCcHHHHHHHHHHhhccc
Confidence 345579999999886433 1124777764 334333 33588999999999999999874
No 23
>PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S55 (SpoIVB peptidase family, clan PA(S)). The protein SpoIVB plays a key role in signalling in the final sigma-K checkpoint of Bacillus subtilis [, ].
Probab=74.22 E-value=4.1 Score=33.20 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCCcCCCCCceEEEeeCCeEEEEEEEEeCC
Q psy15291 238 DSCEGDSGGPLMIEREDGHWVLAGTVSHGI 267 (295)
Q Consensus 238 ~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~ 267 (295)
...+|-||+|++.+. .|+|-++++.
T Consensus 176 GIvqGMSGSPI~qdG-----KLiGAVthvf 200 (218)
T PF05580_consen 176 GIVQGMSGSPIIQDG-----KLIGAVTHVF 200 (218)
T ss_pred CEEecccCCCEEECC-----EEEEEEEEEE
Confidence 578999999998865 8999999975
No 24
>KOG3925|consensus
Probab=72.41 E-value=4.8 Score=35.21 Aligned_cols=9 Identities=33% Similarity=0.697 Sum_probs=4.2
Q ss_pred EEEEEEEeC
Q psy15291 258 VLAGTVSHG 266 (295)
Q Consensus 258 ~lvGi~S~g 266 (295)
+++|+.+.|
T Consensus 280 ~~vg~s~rg 288 (371)
T KOG3925|consen 280 FVVGTSTRG 288 (371)
T ss_pred eEEEeccCC
Confidence 455554433
No 25
>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S32 (clan PA(S)). The type example is equine arteritis virus serine endopeptidase (equine arteritis virus), which is involved in processing of nidovirus polyproteins [].; GO: 0004252 serine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 3FAN_A 3FAO_A 1MBM_A.
Probab=66.36 E-value=3.8 Score=34.46 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=16.5
Q ss_pred cCCCCCceEEEeeCCeEEEEEEEEeC
Q psy15291 241 EGDSGGPLMIEREDGHWVLAGTVSHG 266 (295)
Q Consensus 241 ~gdsGgPl~~~~~~g~~~lvGi~S~g 266 (295)
.||||+|++..+ | .|+||.+.+
T Consensus 207 ~GDSGSPVVt~d--g--~liGVHTGS 228 (297)
T PF05579_consen 207 PGDSGSPVVTED--G--DLIGVHTGS 228 (297)
T ss_dssp GGCTT-EEEETT--C---EEEEEEEE
T ss_pred CCCCCCccCcCC--C--CEEEEEecC
Confidence 699999999874 4 699999864
No 26
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.
Probab=64.19 E-value=3.9 Score=39.76 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=18.7
Q ss_pred ccceEEeeCC-EEEEeCCCCCC
Q psy15291 81 PQQDSMMTNF-DMFTINLSKIG 101 (295)
Q Consensus 81 ~C~GtLIs~~-~VLTAAhC~~~ 101 (295)
.|+|++||++ .|||--||..+
T Consensus 48 GCSgsfVS~~GLvlTNHHC~~~ 69 (698)
T PF10459_consen 48 GCSGSFVSPDGLVLTNHHCGYG 69 (698)
T ss_pred ceeEEEEcCCceEEecchhhhh
Confidence 4999999986 99999999865
No 27
>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies the Hepatitis C virus NS3 protein as a serine protease which belongs to MEROPS peptidase family S29 (hepacivirin family, clan PA(S)), which has a trypsin-like fold. The non-structural (NS) protein NS3 is one of the NS proteins involved in replication of the HCV genome. The NS2 proteinase (IPR002518 from INTERPRO), a zinc-dependent enzyme, performs a single proteolytic cut to release the N terminus of NS3. The action of NS3 proteinase (NS3P), which resides in the N-terminal one-third of the NS3 protein, then yields all remaining non-structural proteins. The C-terminal two-thirds of the NS3 protein contain a helicase. The functional relationship between the proteinase and helicase domains is unknown. NS3 has a structural zinc-binding site and requires cofactor NS4. It has been suggested that the NS3 serine protease of hepatitus C is involved in cell transformation and that the ability to transform requires an active enzyme [].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0019087 transformation of host cell by virus; PDB: 2QV1_B 3LOX_C 2OBQ_C 2OC1_C 2OC0_A 3LON_A 3KNX_A 2O8M_A 2OBO_A 2OC8_A ....
Probab=62.82 E-value=5.3 Score=29.88 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=15.5
Q ss_pred CcCCCCCceEEEeeCCeEEEEEEEEe
Q psy15291 240 CEGDSGGPLMIEREDGHWVLAGTVSH 265 (295)
Q Consensus 240 C~gdsGgPl~~~~~~g~~~lvGi~S~ 265 (295)
-.|.||||++|.. | .++||...
T Consensus 106 lkGSSGgPiLC~~--G--H~vG~f~a 127 (148)
T PF02907_consen 106 LKGSSGGPILCPS--G--HAVGMFRA 127 (148)
T ss_dssp HTT-TT-EEEETT--S--EEEEEEEE
T ss_pred EecCCCCcccCCC--C--CEEEEEEE
Confidence 3688999999974 4 68898754
No 28
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=58.99 E-value=12 Score=33.88 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=31.7
Q ss_pred CCCCcCCCCCceEEEeeCCeEEEEEEEEeCCCCCCCCCCcEEeeCCCcHhHHhhhhCC
Q psy15291 237 RDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTITGV 294 (295)
Q Consensus 237 ~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~~c~~~~~p~v~t~v~~~~~WI~~~~~~ 294 (295)
....+|-||+|++.+. .|+|-+++..-.......++ |++|+.+..++
T Consensus 355 gGivqGMSGSPi~q~g-----kliGAvtHVfvndpt~GYGi------~ie~Ml~~~~~ 401 (402)
T TIGR02860 355 GGIVQGMSGSPIIQNG-----KVIGAVTHVFVNDPTSGYGV------YIEWMLKEAGI 401 (402)
T ss_pred CCEEecccCCCEEECC-----EEEEEEEEEEecCCCcceee------hHHHHHHHhcc
Confidence 3567899999999865 89999998643221111222 57888876553
No 29
>KOG2422|consensus
Probab=53.04 E-value=2.3 Score=39.63 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=7.8
Q ss_pred CceEEEEecCCCCC
Q psy15291 145 NDIALLELETPIAY 158 (295)
Q Consensus 145 ~DiALlkL~~~i~~ 158 (295)
|.|++|-...|...
T Consensus 271 n~v~~lL~ssPYHv 284 (665)
T KOG2422|consen 271 NNVLILLISSPYHV 284 (665)
T ss_pred cceeeeeccCCcch
Confidence 55665555555543
No 30
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=49.96 E-value=3.6 Score=30.67 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=18.6
Q ss_pred CcCCCCCceEEEeeCCeEEEEEEEEeCCC
Q psy15291 240 CEGDSGGPLMIEREDGHWVLAGTVSHGIK 268 (295)
Q Consensus 240 C~gdsGgPl~~~~~~g~~~lvGi~S~g~~ 268 (295)
-+||||-|++.+ .| .+|||+-.|..
T Consensus 104 ~~GDSGRpi~DN--sG--rVVaIVLGG~n 128 (158)
T PF00944_consen 104 KPGDSGRPIFDN--SG--RVVAIVLGGAN 128 (158)
T ss_dssp STTSTTEEEEST--TS--BEEEEEEEEEE
T ss_pred CCCCCCCccCcC--CC--CEEEEEecCCC
Confidence 479999999875 45 58888876543
No 31
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=46.61 E-value=18 Score=27.98 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.4
Q ss_pred cceeec
Q psy15291 69 TVSRHT 74 (295)
Q Consensus 69 ~~~~~~ 74 (295)
.+++++
T Consensus 134 V~~rLE 139 (155)
T PF08496_consen 134 VLVRLE 139 (155)
T ss_pred EEEEEe
Confidence 344433
No 32
>KOG1230|consensus
Probab=46.23 E-value=7.2 Score=35.05 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=13.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15291 1 MIRSRRRKEKKKKKKKKKKKKKKKKKK 27 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~k 27 (295)
|.||-||.+|-|+-.|+.+|-.||.-|
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~ak 27 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKFAK 27 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHHHh
Confidence 555555555545444554444444433
No 33
>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature identifies serine peptidases belong to MEROPS peptidase family S7 (flavivirin family, clan PA(S)). The protein fold of the peptidase domain for members of this family resembles that of chymotrypsin, the type example for clan PA. Flaviviruses produce a polyprotein from the ssRNA genome. The N terminus of the NS3 protein (approx. 180 aa) is required for the processing of the polyprotein. NS3 also has conserved homology with NTP-binding proteins and DEAD family of RNA helicase [, , ].; GO: 0003723 RNA binding, 0003724 RNA helicase activity, 0005524 ATP binding; PDB: 2IJO_B 3E90_D 2GGV_B 2FP7_B 2WV9_A 3U1I_B 3U1J_B 2WZQ_A 2WHX_A 3L6P_A ....
Probab=40.37 E-value=17 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=17.3
Q ss_pred CCCcCCCCCceEEEeeCCeEEEEEEEEeCC
Q psy15291 238 DSCEGDSGGPLMIEREDGHWVLAGTVSHGI 267 (295)
Q Consensus 238 ~~C~gdsGgPl~~~~~~g~~~lvGi~S~g~ 267 (295)
+.-.|.||+|++.. +| .++||.-.+.
T Consensus 93 d~~~GsSGSpi~n~--~g--~ivGlYg~g~ 118 (132)
T PF00949_consen 93 DFPKGSSGSPIFNQ--NG--EIVGLYGNGV 118 (132)
T ss_dssp -S-TTGTT-EEEET--TS--CEEEEEEEEE
T ss_pred ccCCCCCCCceEcC--CC--cEEEEEccce
Confidence 45578999999965 44 6888887654
No 34
>KOG4364|consensus
Probab=39.46 E-value=66 Score=30.94 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=5.9
Q ss_pred CCeEEEEEEEEeC
Q psy15291 254 DGHWVLAGTVSHG 266 (295)
Q Consensus 254 ~g~~~lvGi~S~g 266 (295)
+|.|+-.|-+|-+
T Consensus 556 DgffVPhgyLSed 568 (811)
T KOG4364|consen 556 DGFFVPHGYLSED 568 (811)
T ss_pred CCeecCCcccccc
Confidence 3344444555543
No 35
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents S46 peptidases, where dipeptidyl-peptidase 7 (DPP-7) is the best-characterised member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.
Probab=36.92 E-value=22 Score=34.81 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCeEEeeecCCCCCCCcCCCCCceEEEeeCCeEEEEEEEEeC
Q psy15291 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHG 266 (295)
Q Consensus 225 ~~~~Ca~~~~~~~~~C~gdsGgPl~~~~~~g~~~lvGi~S~g 266 (295)
+.-+|.-. +.++..|.||||++... | .|||++=-|
T Consensus 619 ~~pv~Fls---tnDitGGNSGSPvlN~~--G--eLVGl~FDg 653 (698)
T PF10459_consen 619 SVPVNFLS---TNDITGGNSGSPVLNAK--G--ELVGLAFDG 653 (698)
T ss_pred CeeeEEEe---ccCcCCCCCCCccCCCC--c--eEEEEeecC
Confidence 33455432 25788999999999864 4 799997433
No 36
>KOG2967|consensus
Probab=34.26 E-value=1e+02 Score=26.91 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=3.8
Q ss_pred HHHHHhhhhh
Q psy15291 37 MELEKLQQRH 46 (295)
Q Consensus 37 ~~~~~~~~~~ 46 (295)
++.+.+....
T Consensus 68 k~~~~i~~g~ 77 (314)
T KOG2967|consen 68 KRNELIELGL 77 (314)
T ss_pred HHHhhcccCc
Confidence 3333333333
No 37
>KOG3925|consensus
Probab=31.24 E-value=83 Score=27.86 Aligned_cols=8 Identities=50% Similarity=0.572 Sum_probs=3.4
Q ss_pred cHhHHhhh
Q psy15291 284 YKPWLQTI 291 (295)
Q Consensus 284 ~~~WI~~~ 291 (295)
-++|....
T Consensus 357 slp~~~~~ 364 (371)
T KOG3925|consen 357 SLPRLQTM 364 (371)
T ss_pred hhhhhhhh
Confidence 34444443
No 38
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=29.93 E-value=30 Score=26.15 Aligned_cols=18 Identities=50% Similarity=1.025 Sum_probs=15.7
Q ss_pred eEEeeecCCCCCCCcCCCCCceE
Q psy15291 227 FLCAGYANGQRDSCEGDSGGPLM 249 (295)
Q Consensus 227 ~~Ca~~~~~~~~~C~gdsGgPl~ 249 (295)
.+|.| .+.|.||+=|||+
T Consensus 5 ~lCIG-----TDRstGDsLGPLV 22 (140)
T TIGR02841 5 LLCIG-----TDRSTGDALGPLV 22 (140)
T ss_pred EEEEC-----CCCCcccccchhh
Confidence 58986 6889999999998
No 39
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=29.86 E-value=31 Score=26.92 Aligned_cols=19 Identities=58% Similarity=1.060 Sum_probs=16.4
Q ss_pred CeEEeeecCCCCCCCcCCCCCceE
Q psy15291 226 SFLCAGYANGQRDSCEGDSGGPLM 249 (295)
Q Consensus 226 ~~~Ca~~~~~~~~~C~gdsGgPl~ 249 (295)
-.+|.| .+.|.|||=|||+
T Consensus 28 v~lCIG-----TDRstGDsLGPLV 46 (163)
T PF06866_consen 28 VFLCIG-----TDRSTGDSLGPLV 46 (163)
T ss_pred EEEEEC-----CCCCccccccchh
Confidence 468986 6889999999998
No 40
>KOG2775|consensus
Probab=29.03 E-value=43 Score=28.89 Aligned_cols=10 Identities=30% Similarity=0.454 Sum_probs=5.7
Q ss_pred eEEEECCCCC
Q psy15291 130 RRVIVHRQYD 139 (295)
Q Consensus 130 ~~i~~hp~y~ 139 (295)
-.+.+.|.|+
T Consensus 184 FTv~F~p~~d 193 (397)
T KOG2775|consen 184 FTVAFNPKYD 193 (397)
T ss_pred eEEeeCcccc
Confidence 3455666665
No 41
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=24.30 E-value=33 Score=21.39 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=20.0
Q ss_pred CCCCcCCC-CCceEEEeeCCeEEEEEEE
Q psy15291 237 RDSCEGDS-GGPLMIEREDGHWVLAGTV 263 (295)
Q Consensus 237 ~~~C~gds-GgPl~~~~~~g~~~lvGi~ 263 (295)
.+.|.... |++++..+.+|++.+.|=+
T Consensus 23 ~GlyeV~~~~~~i~Y~~~dg~yli~G~l 50 (57)
T PF10411_consen 23 PGLYEVVLKGGGILYVDEDGRYLIQGQL 50 (57)
T ss_dssp TTEEEEEE-TTEEEEEETTSSEEEES-E
T ss_pred CCeEEEEECCCeEEEEcCCCCEEEEeEE
Confidence 45666666 8888887779999998854
No 42
>KOG2409|consensus
Probab=23.13 E-value=1.7e+02 Score=27.59 Aligned_cols=14 Identities=7% Similarity=-0.315 Sum_probs=8.9
Q ss_pred eCCEEEEeCCCCCC
Q psy15291 88 TNFDMFTINLSKIG 101 (295)
Q Consensus 88 s~~~VLTAAhC~~~ 101 (295)
..+|=-+-.||...
T Consensus 420 ~gd~~~~eg~~ed~ 433 (647)
T KOG2409|consen 420 PGDDSEDEGSVEDE 433 (647)
T ss_pred CCCcchhcccccch
Confidence 44666777777643
No 43
>KOG1320|consensus
Probab=22.56 E-value=4.1e+02 Score=24.83 Aligned_cols=24 Identities=4% Similarity=-0.128 Sum_probs=19.6
Q ss_pred ccccccceEEeeCCEEEEeCCCCC
Q psy15291 77 TLQFPQQDSMMTNFDMFTINLSKI 100 (295)
Q Consensus 77 ~~~~~C~GtLIs~~~VLTAAhC~~ 100 (295)
.....|+|-.|..+-+||-||++.
T Consensus 84 q~~~~~s~f~i~~~~lltn~~~v~ 107 (473)
T KOG1320|consen 84 QFSSGGSGFAIYGKKLLTNAHVVA 107 (473)
T ss_pred hhcccccchhhcccceeecCcccc
Confidence 344578888899999999999986
No 44
>PLN03086 PRLI-interacting factor K; Provisional
Probab=22.46 E-value=2.3e+02 Score=27.08 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=5.8
Q ss_pred eEEeeCCEEEE
Q psy15291 84 DSMMTNFDMFT 94 (295)
Q Consensus 84 GtLIs~~~VLT 94 (295)
|.+.-|.|++.
T Consensus 151 G~v~lP~wm~~ 161 (567)
T PLN03086 151 GSVGLPPHVWS 161 (567)
T ss_pred CeEEcCHHHHh
Confidence 45555555543
No 45
>KOG3165|consensus
Probab=21.71 E-value=1.4e+02 Score=23.33 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=6.7
Q ss_pred CCcceeeccccccc
Q psy15291 67 PPTVSRHTLYTLQF 80 (295)
Q Consensus 67 ~p~~~~~~~~~~~~ 80 (295)
+|+.+.+.++.-.|
T Consensus 62 PPy~vivDTNFINf 75 (195)
T KOG3165|consen 62 PPYHVIVDTNFINF 75 (195)
T ss_pred CCeEEEEecchhhH
Confidence 56555444444443
No 46
>KOG2775|consensus
Probab=20.92 E-value=38 Score=29.23 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=3.0
Q ss_pred cccceEE
Q psy15291 80 FPQQDSM 86 (295)
Q Consensus 80 ~~C~GtL 86 (295)
||-+-||
T Consensus 138 FPtG~Sl 144 (397)
T KOG2775|consen 138 FPTGCSL 144 (397)
T ss_pred CCCcccc
Confidence 4444344
No 47
>KOG3709|consensus
Probab=20.37 E-value=82 Score=29.44 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=4.0
Q ss_pred hhhhccc
Q psy15291 52 ALCRNIG 58 (295)
Q Consensus 52 ~~~ri~~ 58 (295)
-.+|++.
T Consensus 718 gI~RLIC 724 (778)
T KOG3709|consen 718 GIGRLIC 724 (778)
T ss_pred Hhhhhee
Confidence 4556664
Done!