RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15291
(295 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 210 bits (537), Expect = 6e-68
Identities = 79/189 (41%), Positives = 110/189 (58%), Gaps = 7/189 (3%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
+N G +D+S + I V++VIVH Y+ +T++NDIALL+L+ P+ ++
Sbjct: 50 SNYTVRLGSHDLSSNEGGGQVI--KVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVR 107
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
PIC+P + G TVSGWGR GG +P VLQEV VP++ N C+ + G T
Sbjct: 108 PICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGG---T 164
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I ++ LCAG G +D+C+GDSGGPL+ +G VL G VS G CA P PGVY R +
Sbjct: 165 ITDNMLCAGGLEGGKDACQGDSGGPLVCND-NGRGVLVGIVSWGSGCARPNYPGVYTRVS 223
Query: 283 YYKPWLQTI 291
Y W+Q
Sbjct: 224 SYLDWIQKT 232
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 199 bits (509), Expect = 1e-63
Identities = 76/185 (41%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
N+ G +D+S E + V +VI+H Y+ +T++NDIALL+L+ P+ ++ P
Sbjct: 52 NIRVRLGSHDLSSGEEGQVI---KVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRP 108
Query: 165 ICMP-KDDDDFTGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
IC+P + + G TVSGWGR G G P LQEV VP++ N C+ +
Sbjct: 109 ICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR---RAYSGGGA 165
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I ++ LCAG G +D+C+GDSGGPL+ DG WVL G VS G CA P PGVY R +
Sbjct: 166 ITDNMLCAGGLEGGKDACQGDSGGPLVC--NDGRWVLVGIVSWGSGCARPGKPGVYTRVS 223
Query: 283 YYKPW 287
Y W
Sbjct: 224 SYLDW 228
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 143 bits (363), Expect = 5e-42
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 16/185 (8%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
++ V G ++I ++ V++VIVH Y+ T NDIALL+L++P+ + P
Sbjct: 49 SVRVVLGAHNIVLREGGEQKFD--VKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVRP 105
Query: 165 ICMPKDDDDF-TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
IC+P D G TVSGWG G+P LQEV VPV+ C+ + T+
Sbjct: 106 ICLPTASSDLPVGTTCTVSGWGNT-KTLGLPDTLQEVTVPVVSRETCRSAYGG-----TV 159
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
++ +CAG G +D+C+GDSGGPL+ DG L G VS G CA+ PGVY +
Sbjct: 160 TDNMICAGA--GGKDACQGDSGGPLV--CSDG--ELIGIVSWGYGCASGNYPGVYTPVSS 213
Query: 284 YKPWL 288
Y W+
Sbjct: 214 YLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 78.8 bits (194), Expect = 1e-16
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 26/199 (13%)
Query: 109 VFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMP 168
D++ +A+R +VR + VH Y NDIA+LEL +P
Sbjct: 91 NRVVVDLNDSSQAERG---HVRTIYVHEFYSPGNLGNDIAVLELARAA-----SLPRVKI 142
Query: 169 KDDDDFTGRVATVSGWGRLKYGG-------GVP------SVLQEVQVPVIENNVCQEMFQ 215
D + +V+ + G VP ++L EV V + + C +
Sbjct: 143 TSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKG 202
Query: 216 TAGHAKTIINSF-LCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGI-KCAAPY 273
A + CAG +D+C+GDSGGP+ + E+G V G VS G C
Sbjct: 203 CANASDGATGLTGFCAG--RPPKDACQGDSGGPIFHKGEEGR-VQRGVVSWGDGGCGGTL 259
Query: 274 LPGVYMRTTYYKPWLQTIT 292
+PGVY + Y+ W+ +T
Sbjct: 260 IPGVYTNVSNYQDWIAAMT 278
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 46.5 bits (111), Expect = 8e-06
Identities = 18/27 (66%), Positives = 25/27 (92%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++R+EKK +K+KKKKK+KKK KK+KKK
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 45.0 bits (107), Expect = 3e-05
Identities = 16/27 (59%), Positives = 25/27 (92%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++++E+KK +K+KKKKK+KKK KK+KK
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 43.8 bits (104), Expect = 7e-05
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +K +K+KKKKK+KKK KK+KKK +K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 40.3 bits (95), Expect = 7e-04
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K+K+++KK +K+KKKKK+KKK KK +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRK 409
Score = 40.0 bits (94), Expect = 0.001
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
I+ + K KKK+++KK +K+KKKKK+KKK
Sbjct: 374 EIKEKYPKPPKKKREEKKPQKRKKKKKRKKK 404
Score = 36.1 bits (84), Expect = 0.016
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
I + K K KKK+++KK +K+KKKKK+
Sbjct: 372 IEEIKEKYPKPPKKKREEKKPQKRKKKKKR 401
Score = 31.5 bits (72), Expect = 0.47
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R +E K+K K KKK+++KK +K+K
Sbjct: 370 KRIEEIKEKYPKPPKKKREEKKPQKRK 396
Score = 29.2 bits (66), Expect = 2.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R E+ K+K K KKK+++KK +K+
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKR 395
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 42.2 bits (100), Expect = 3e-05
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK-----LQQRHREEIEALCR 55
I + K +KK+++KK + +K K ++K E + +LEK + R E++A +
Sbjct: 16 AIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Query: 56 NI 57
+
Sbjct: 76 KM 77
Score = 32.6 bits (75), Expect = 0.071
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL-----QQRHREEIEAL 53
+EK K+ K K+K K +KK E ++ E EKL +++ E+E L
Sbjct: 4 EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKL 54
Score = 31.5 bits (72), Expect = 0.17
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 3 RSRRRKEKKKK-KKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++ KE K K+K K +KK+++KK + ++ +M E+ + E++E
Sbjct: 6 KTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 27.2 bits (61), Expect = 5.6
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+EK + + +K +K+ ++ + + + E++ + L
Sbjct: 44 EEKAEYELEKLEKELEELEAELARRELKAEAKKMLS 79
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 44.2 bits (105), Expect = 5e-05
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R EKK+K+K+K K KK+ + K
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIG 423
Score = 43.4 bits (103), Expect = 8e-05
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++R ++K+K+K+K K KK+ + K K
Sbjct: 397 AKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
S++ K+ +KK+K+K+K K KK+ + I
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 41.9 bits (99), Expect = 3e-04
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ +KEK+K+K K KK+ + K K++
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 40.7 bits (96), Expect = 5e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ KEK+K K KK+ + K K++K +
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
R + + +KK K KK K+ +KK+K + + K+++RHR+ +NIG
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKP----KVKKRHRDT-----KNIG 423
Score = 38.8 bits (91), Expect = 0.002
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ ++++K K KK+ + K K++K
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 38.8 bits (91), Expect = 0.002
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
S ++ K KK K+ +KK+K+K+K K + + + + + +R
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 38.0 bits (89), Expect = 0.005
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+ KEK K KK+ + K K++K T +
Sbjct: 405 KEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 35.7 bits (83), Expect = 0.023
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + +++ K KK+ + K K++K +E
Sbjct: 403 KEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+EKK+KKKKK+ KK+KK+KK KK+ ++ +K
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 39.3 bits (92), Expect = 8e-04
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ +K+KK+K + K KKKKKKKKKK
Sbjct: 166 EKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K+ KK+K + K KKKKKKKKKK
Sbjct: 168 KEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+E++KK+KKKKK+ KK+KK+KK K E
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 37.0 bits (86), Expect = 0.005
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ K+KKK+ KK+KK+KK KK+K +
Sbjct: 153 EKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 36.6 bits (85), Expect = 0.006
Identities = 19/29 (65%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Query: 8 KEKKKKKKKKKK----KKKKKKKKKKKKT 32
KEKK+KK KK+K K KKKKKKKKK
Sbjct: 165 KEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 33.9 bits (78), Expect = 0.046
Identities = 15/34 (44%), Positives = 27/34 (79%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ ++++KK+KKKKK+ KK+KK+KK + ++M K
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Score = 32.0 bits (73), Expect = 0.22
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
KE K +K+ + ++++KK+KKKK E
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKE 162
Score = 30.1 bits (68), Expect = 0.86
Identities = 13/42 (30%), Positives = 29/42 (69%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ EK+ + ++++KK+KKKKK+ KK+ + ++ + EK+ +
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 29.3 bits (66), Expect = 1.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
S + K +K+ + ++++KK+KKKKK+
Sbjct: 134 TSEKETTAKVEKEAEVEEEEKKEKKKKKE 162
Score = 28.9 bits (65), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ +K+ + ++++KK+KKKKK+ K E
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKE 166
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 40.8 bits (96), Expect = 1e-04
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
KK+ K++KKK+KKKKKKK KK + ++ E K +
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
++ +++ K++KKK+KKKKKKK KK KK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ K++ K++KKK+KKKKKKK KK K E ++
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKE 113
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R +++KKK+KKKKKKK KK KK++K+
Sbjct: 87 RAKRQKKKQKKKKKKKAKKGNKKEEKEGS 115
Score = 36.2 bits (84), Expect = 0.005
Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 6/34 (17%)
Query: 5 RRRKEKKKK------KKKKKKKKKKKKKKKKKKT 32
++R+EKK+K KK+ K++KKK+KKKKKKK
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKA 103
Score = 33.5 bits (77), Expect = 0.041
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
R++R+K+K+KKKKKKK KK KK++K+ ++
Sbjct: 87 RAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESS 122
Score = 32.7 bits (75), Expect = 0.089
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ +R++KK+KKKKKKK KK KK++K+ ++
Sbjct: 86 KRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 29.2 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
Query: 5 RRRKEKKKKKKKKKKKKKKKK--KKKKKKTE 33
++++E+KK+K ++K KK+ K KKK+KK +
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKK 99
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 41.0 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT--------EIQQMELEKLQQRHREEIEAL 53
++ + EKK +K K K +KKK KK++ K +I E+E L REEI A+
Sbjct: 69 KAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLFVLDFKGDIDASEVESL----REEITAI 123
Score = 34.8 bits (81), Expect = 0.017
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K++ K +K +KK +K K K +KK
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKK 88
Score = 34.0 bits (79), Expect = 0.034
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ + +K+ K +K +KK +K K K +K +
Sbjct: 58 LEAALLDKKELKAWEKAEKKAEKAKAKAEKKKA 90
Score = 32.9 bits (76), Expect = 0.074
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
KK+ K +K +KK +K K K + + + E K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 39.3 bits (92), Expect = 2e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
K K KK KKKKKKKKKK K E E E+ ++ E
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDL 52
Score = 39.3 bits (92), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K K KK KKKKKKKKKK K K+ + + E E+
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEE 44
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+K KKKKKKKKKK K K++ TE ++ E + +E E
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEE 57
Score = 35.1 bits (81), Expect = 0.005
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ KKKKKKKKKK K K++ +K E ++ E + E+ +
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDN 61
Score = 30.9 bits (70), Expect = 0.18
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K+KKKKKK K K++ +K++++K+ + E + E+IE
Sbjct: 22 KKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQ 66
Score = 30.9 bits (70), Expect = 0.19
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
K K K KK KKKKKKKK + + E
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEV 36
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 39.3 bits (92), Expect = 4e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ + +++K+KKKKKKKKKKK KK KKK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 37.7 bits (88), Expect = 0.001
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K+ K+K K+KK+KKKKKKKKKKKT
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTS 127
Score = 36.6 bits (85), Expect = 0.003
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ ++K K+KK+KKKKKKKKKKK K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSK 128
Score = 35.4 bits (82), Expect = 0.008
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ +++ K+KK+KKKKKKKKKKK KK
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131
Score = 33.5 bits (77), Expect = 0.038
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ K+K K+KK+KKKKKKKKKK ++
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKK 129
Score = 28.1 bits (63), Expect = 2.8
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+R+ +E+K K+ K+K K+KK+KKKKK +
Sbjct: 90 VRAFLVEEQKIVKQVLKEKAKQKKQKKKKKKK 121
Score = 27.0 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
E++K K+ K+K K+KK+KKKK + ++ + K
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSK 128
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 39.4 bits (92), Expect = 7e-04
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+K KKKK + K++KKKKK+KKKKK
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKK 166
Score = 38.7 bits (90), Expect = 0.001
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ +KKK + K++KKKKK+KKKKKK
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 37.9 bits (88), Expect = 0.002
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 9/43 (20%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
EKK KKKK + K++KKKKK+KK K ++RH E
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKK---------KKKKRHSPEHP 174
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ K+KK + K++KKKKK+KKKKKK+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ +K+K + K++KKKKK+KKKKKK+ +
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Score = 34.8 bits (80), Expect = 0.024
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+++ E K++KKKKK+KKKKKK+ +
Sbjct: 146 KKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 32.1 bits (73), Expect = 0.20
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK 26
+ + +K++KKKKK+KKKKKK+
Sbjct: 146 KKKHEDDKERKKKKKEKKKKKKRH 169
Score = 31.7 bits (72), Expect = 0.29
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKK 27
+ ++ ++ K++KKKKK+KKKKKK+
Sbjct: 145 KKKKHEDDKERKKKKKEKKKKKKRH 169
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 39.1 bits (92), Expect = 8e-04
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ---QRHREEIEALCRN 56
+S +E KK +++K++ +K+ + + K I++ E E+ Q +RH +EI L +
Sbjct: 120 QGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQ 178
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 40.2 bits (95), Expect = 8e-04
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK------KTEIQQMELEKLQQRHREEIEAL 53
+ K +KKK+K++ K K K K + K +I E+E L REEI A+
Sbjct: 66 LKAWHKAQKKKEKQEAKAAKAKSKPRLFVLDFKGDIDASEVESL----REEITAI 116
Score = 27.9 bits (63), Expect = 6.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+ KK+ K K +KKK+K++
Sbjct: 57 KAALLDKKELKAWHKAQKKKEKQEA 81
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 38.7 bits (91), Expect = 0.001
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
KKK KK KK+K+K++K+ +K + EL++ + + E
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAE 52
Score = 36.4 bits (85), Expect = 0.008
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKK-------KTEIQQMELEKLQQ 44
+KK KK KK+K+K++K+ +K K ++ + EK ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAER 56
Score = 33.7 bits (78), Expect = 0.056
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K+ KK KK+K+K++K+ +K + + E+ + E L
Sbjct: 15 KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDREL 60
Score = 30.3 bits (69), Expect = 0.67
Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 7 RKEKKKKKKKKKKKKKK------------KKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
+K KK+K+K++K+ +K ++ K +K +++ ++ + ++ I A
Sbjct: 18 KKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQI 77
Query: 55 RNI 57
+ +
Sbjct: 78 KQL 80
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R+R EK + K+ KK+ KK +KKK+K
Sbjct: 6 RKRNEKLRAKRAKKRAAKKAARKKKRK 32
Score = 33.4 bits (77), Expect = 0.014
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +R ++ + K+ KK+ KK +KKK+K
Sbjct: 5 KRKRNEKLRAKRAKKRAAKKAARKKKRKL 33
Score = 30.7 bits (70), Expect = 0.15
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+R++R K++ KK +KKK+K K+ +K
Sbjct: 12 LRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKK 31
KK+K+ +K + K+ KK+ KK
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKA 25
Score = 26.8 bits (60), Expect = 3.1
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R+++R KK +KKK+K K+ +K K+ + + +L++ +++
Sbjct: 16 RAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 26.4 bits (59), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKT 32
KK+K+ +K + K+ KK+ KK
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKA 25
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R ++R+E KK+K KK KKKKK KKK +
Sbjct: 176 RQKKREENLKKRKDDKKNKKKKKAKKKGRI 205
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ RRRK +++K +KK+K+K+ KKK+ +K+E
Sbjct: 7 LLEQRRRKREQRKARKKQKRKEAKKKEDAQKSE 39
Score = 35.0 bits (81), Expect = 0.026
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
RR++E++K +KK+K+K+ KKK+ +K + E
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEE 47
Score = 34.6 bits (80), Expect = 0.038
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
R R+R+++K +KK+K+K+ KKK+ +K + E
Sbjct: 11 RRRKREQRKARKKQKRKEAKKKEDAQKSEAEEV 43
Score = 33.0 bits (76), Expect = 0.10
Identities = 12/33 (36%), Positives = 27/33 (81%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+++++K++++K +KK+K+K+ KKK + Q+ E E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAE 41
Score = 33.0 bits (76), Expect = 0.11
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKK 26
++RK+ KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 32.7 bits (75), Expect = 0.14
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+R+ K++++K +KK+K+K+ KKK+ + + E
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEE 42
Score = 31.5 bits (72), Expect = 0.34
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ +K K KKKKKKKK K+ KK E ++ +LE+L + EIE
Sbjct: 76 QAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIE 120
Score = 31.5 bits (72), Expect = 0.36
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R++K ++ KK+K KK KKKKK KKK
Sbjct: 173 KAERQKKREENLKKRKDDKKNKKKKKAKKK 202
Score = 31.1 bits (71), Expect = 0.48
Identities = 14/36 (38%), Positives = 28/36 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
KK K+K+K+KKK KK+ K++K ++++ + E+ ++R
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKR 180
Score = 30.4 bits (69), Expect = 0.92
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ +RK +KK+K+K+ KKK+ +K + ++ + ++ + +K
Sbjct: 14 KREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAP 56
Score = 30.0 bits (68), Expect = 1.2
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
SR +++++K++++K +KK+K+K+ K + + E + ++ E
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEEN 48
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+K K+K+K+KKK KK+ K++K+K + + +K
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKK 179
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+RKEK+KKK KK+ K++K+K +KKK
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAE 175
Score = 28.8 bits (65), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKK 24
++ R+ +K KKKKK KKK +
Sbjct: 184 LKKRKDDKKNKKKKKAKKKGRIL 206
Score = 28.0 bits (63), Expect = 4.4
Identities = 10/52 (19%), Positives = 32/52 (61%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
S R +++++K++++K +KK+K+K+ + + + + ++ EE ++ +
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKK 53
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH---REEIEAL 53
+ ++ KKK++ K + K+ KK + Q ELE+L Q EIEAL
Sbjct: 534 LALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIEAL 587
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/29 (41%), Positives = 24/29 (82%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R++ R EK+K+ +K ++KK K+++K+K+K
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+R R KE+ +K+K+ +K ++KK K+++K+ E
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 35.7 bits (83), Expect = 0.007
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
I R R+E+ K++ +K+K+ +K ++KK K+
Sbjct: 94 IALRLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 35.7 bits (83), Expect = 0.008
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ RR+ K++ +K+K+ +K ++KK K++
Sbjct: 94 IALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 33.4 bits (77), Expect = 0.040
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ R R +++ +K+K+ +K ++KK K+++K
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 32.2 bits (74), Expect = 0.11
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ R+++KKKK+K+ KK++ + +++ ++ E EK +++RE
Sbjct: 73 KELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNRE 118
Score = 31.9 bits (73), Expect = 0.15
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R R +++ K++ +K+K+ +K ++KK
Sbjct: 93 RIALRLRRERTKERAEKEKRTRKNREKK 120
Score = 31.5 bits (72), Expect = 0.20
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
R + ++++ K++ +K+K+ +K ++KK + +Q E EK
Sbjct: 92 RRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 30.7 bits (70), Expect = 0.37
Identities = 8/44 (18%), Positives = 28/44 (63%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+R++ KK++ + ++++ K++ +K+ ++ +K ++R +E
Sbjct: 84 KRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 26.9 bits (60), Expect = 8.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
K +K+ ++K+KKKK+K+ KK I L ++R +E E R
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIA---LRLRRERTKERAEKEKRT 113
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/39 (35%), Positives = 30/39 (76%), Gaps = 4/39 (10%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
E+ K++KKK+ K+KK+++K++K+ Q++ +K + +HR
Sbjct: 96 ERNKQEKKKRSKEKKEEEKERKR----QLKQQKKKAKHR 130
Score = 33.8 bits (78), Expect = 0.033
Identities = 12/29 (41%), Positives = 24/29 (82%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +R KEKK+++K++K++ K++KKK K +
Sbjct: 102 KKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 30.3 bits (69), Expect = 0.58
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 6/33 (18%)
Query: 5 RRRKEKKKKKKKKKKKKKKKK------KKKKKK 31
R ++EKKK+ K+KK+++K++K KKK K
Sbjct: 97 RNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 38.6 bits (90), Expect = 0.003
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
K KK KKKKKKKKK++K + E++
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEG 303
Score = 37.0 bits (86), Expect = 0.011
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTE 33
+ K KK KKKKKKKKK++K E
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDE 294
Score = 36.7 bits (85), Expect = 0.012
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKK 30
E K KK KKKKKKKKK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 36.3 bits (84), Expect = 0.020
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+ K KK KKKKKKKKK++K
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKD 291
Score = 31.3 bits (71), Expect = 0.58
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K KKKKKKKKK++K + + + E + + R E E
Sbjct: 277 KPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEEN 319
Score = 31.3 bits (71), Expect = 0.63
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 1 MIRSRRRKEKKKKKKKKKKKK------------KKKKKKKKKKTEIQQMELEKLQQRHRE 48
M++ ++ K+KKKKKKK++K +K E + LE ++ +E
Sbjct: 272 MVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKE 331
Query: 49 EIE 51
E E
Sbjct: 332 EQE 334
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R+R+E ++K K ++K+++ K KT
Sbjct: 51 AKRKREELREKIAKAREKRERNSKLGGIKT 80
Score = 28.6 bits (64), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+K KK++KKK+ ++KK +K+K
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEKERAA 124
Score = 27.8 bits (62), Expect = 8.2
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
++R++E+ ++K K ++K+++ K +
Sbjct: 49 AEAKRKREELREKIAKAREKRERNSKLGGIKTL 81
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 36.4 bits (84), Expect = 0.004
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKK 31
EK KKKKKK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.9 bits (80), Expect = 0.011
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKK 29
K KKKKKK KK KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.5 bits (74), Expect = 0.078
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTE 33
K KKKKKK KK KK KK K +
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.8 bits (72), Expect = 0.15
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTE 33
E +K KKKKKK KK KK KK +
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 27.5 bits (61), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 5 RRRKEKKKKKKKKKKKKKKK 24
+++K+K KK KK KK KK
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 37.7 bits (88), Expect = 0.004
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ KK K K ++K+K K++K++K + E + +
Sbjct: 56 AKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Score = 37.3 bits (87), Expect = 0.004
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQME--------LEKLQQRHREEIEA 52
K K KK K K ++K+K K++K++ ++++E EKL+ R + + E+
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR-KLQEES 106
Score = 36.6 bits (85), Expect = 0.010
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
E+K+++K K K K KK K K E ++ + ++ ++
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIE-EKEKAKREKEEKGLR 82
Score = 36.2 bits (84), Expect = 0.012
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
KE++K K K K KK K K ++ E + E E+ R EE
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDT 88
Score = 35.8 bits (83), Expect = 0.014
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
E ++K+++K K K K KK K +I++ E K ++ + E
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 35.0 bits (81), Expect = 0.025
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
EK K +K K KKKK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAK 214
Score = 34.6 bits (80), Expect = 0.036
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+EK+++K K K K KK K K E ++ + EK ++ RE E
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 33.5 bits (77), Expect = 0.093
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ + K K KK K K ++K+K K E ++ L +L++ E+ A
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELA 94
Score = 32.7 bits (75), Expect = 0.18
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKT 32
K K +K K KKKK K K K
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKL 215
Score = 32.3 bits (74), Expect = 0.20
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+ EK K KKKK K K K
Sbjct: 196 KAEKAAKGGKKKKGKAKAKLNVGGA 220
Score = 31.9 bits (73), Expect = 0.28
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++++ ++K+++K K K K KK ++E ++ +R +EE
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 31.6 bits (72), Expect = 0.41
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ K K K KK K K ++K+K ++ + EK + E+
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKA--KREKEEKGLRELEED 87
Score = 31.6 bits (72), Expect = 0.43
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K K KKKK K K K
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGAND 222
Score = 30.8 bits (70), Expect = 0.76
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
E++ ++K+++K K K K KK + + E EK ++ E+
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEK 79
Score = 29.6 bits (67), Expect = 1.5
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K KKKK K K K
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDD 223
Score = 29.6 bits (67), Expect = 1.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKK 31
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKA 213
Score = 29.6 bits (67), Expect = 1.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKT 32
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKA 213
Score = 29.6 bits (67), Expect = 1.7
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+ + KKKK K K K +
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDDDDDYD 228
Score = 27.7 bits (62), Expect = 6.4
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ K KKKK K K K
Sbjct: 199 KAAKGGKKKKGKAKAKLNVGGANDDD 224
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 37.3 bits (87), Expect = 0.004
Identities = 10/41 (24%), Positives = 27/41 (65%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+R +E++++ + K + ++ + K+K E+Q+ E E+++ R
Sbjct: 129 KRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.0 bits (81), Expect = 0.005
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
KKKKKKKKKK + K KK
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 34.6 bits (80), Expect = 0.008
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
KKKKKKKKKK + K K + E
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.9 bits (78), Expect = 0.012
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQME 38
KKKKKKKKKK + K + E
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAE 49
Score = 33.1 bits (76), Expect = 0.026
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K+KKKKKKKK + K KK E
Sbjct: 24 KKKKKKKKKKAEDTAATAKAKKATAE 49
Score = 33.1 bits (76), Expect = 0.027
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
+KKKKKKKKK + K KK T
Sbjct: 23 VKKKKKKKKKKAEDTAATAKAKKATA 48
Score = 31.6 bits (72), Expect = 0.10
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ E KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKA 43
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ + +KKK KKKK K K KK KK K+E + + +
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 35.8 bits (83), Expect = 0.012
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ K KKKK KKKK K K KK KK
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKS 110
Score = 35.4 bits (82), Expect = 0.015
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
EK+K K KKKK KKKK K K KK + + + EK ++ E+
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Score = 35.1 bits (81), Expect = 0.018
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
++K K KKKK KKKK K K KK KK + + + EK
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 35.1 bits (81), Expect = 0.018
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+K+K K K KK KK K +KK +K +LE L +
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAED--KLEDLTK 127
Score = 35.1 bits (81), Expect = 0.019
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+++K K KKKK KKKK K K KK + +K ++ +++E L
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDL 125
Score = 33.9 bits (78), Expect = 0.054
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+ + K+KK KKKK K K KK KK K + + E E
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 33.5 bits (77), Expect = 0.069
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ ++ E+K+K K KKKK KKKK K K K
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKKKKDKDKDK 101
Score = 33.1 bits (76), Expect = 0.085
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+++ + KKKK KKKK K K KK KK
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 32.0 bits (73), Expect = 0.22
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ ++K+ K K KK KK K +KK +K+ E
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 31.6 bits (72), Expect = 0.32
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+KE ++K+K K KKKK KKKK K K +
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDK 101
Score = 30.4 bits (69), Expect = 0.79
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
EK KK+ ++K+K K KKKK KKK +
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKD 96
Score = 30.4 bits (69), Expect = 0.81
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K+ KK K +KK +K+ + K + T+ L L +
Sbjct: 102 KDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSE 138
Score = 28.5 bits (64), Expect = 3.4
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ KK KK K +KK +K+ + K E +
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 37.6 bits (88), Expect = 0.006
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
I + K+++++KK+KKKK KKK++++ E ++ + E+ ++ E E
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 35.7 bits (83), Expect = 0.022
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
++ +K +++KK+KKKK KKK+++++ E ++ E EK ++ E E
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 35.3 bits (82), Expect = 0.033
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ ++ KK KK +K +KK++++KK+KK + + ++
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKE 441
Score = 34.9 bits (81), Expect = 0.047
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
I+ K +KK++++KK+KKKK KKK+ E ++ + +K +++ EE EA
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 34.9 bits (81), Expect = 0.050
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ ++ +KK++++KK+KKKK KKK E ++ E EK
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEK 450
Score = 34.1 bits (79), Expect = 0.068
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
S++ +K KK +K +KK++++KK+KKK + E+ ++ +E+ E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 33.7 bits (78), Expect = 0.098
Identities = 14/52 (26%), Positives = 33/52 (63%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++++KKK KKK+++++++K+KK+ E ++ E E +++ EE +
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 33.0 bits (76), Expect = 0.19
Identities = 14/49 (28%), Positives = 32/49 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ R ++K+KKKK KKK+++++++K+ + ++ E E+ + +E E
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 31.0 bits (71), Expect = 0.71
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
KK KK KK +K +KK++++K E ++ ++ EE E
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEE 447
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 37.7 bits (88), Expect = 0.006
Identities = 14/34 (41%), Positives = 28/34 (82%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+R KE+K+ K++K+ +K KK+++KKK E++++E
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 36.5 bits (85), Expect = 0.014
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+++K++K+ K++K+ +K KK+ E ++ ELEKL++
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 35.4 bits (82), Expect = 0.030
Identities = 12/37 (32%), Positives = 28/37 (75%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
++EK++K+ K++K+ +K KK+++K + + +LEK +
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 35.0 bits (81), Expect = 0.051
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + K++K+ +K KK+++KKKK+ +K E
Sbjct: 557 KEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 33.1 bits (76), Expect = 0.19
Identities = 8/43 (18%), Positives = 29/43 (67%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ +K++ +++K++K+ K++K+ +K + Q+ + +K ++ +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 28.1 bits (63), Expect = 7.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+K +K KK+++KKKK+ +K +K K +
Sbjct: 565 EQKRLRKLKKQEEKKKKELEKLEKAKIPPAEF 596
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 37.4 bits (86), Expect = 0.007
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
RR +++ +K K++KKK++K+K+ +++ + E + +I
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDI 133
Score = 35.4 bits (81), Expect = 0.028
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
++K KK KKK+KK+K+K++ K KK E++ +
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 35.0 bits (80), Expect = 0.041
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKK 29
R R+R EK K++KKK++K+K+ +++
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 35.0 bits (80), Expect = 0.047
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+K KK KKK+KK+K+K++ K KKK+ E
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVE 223
Score = 34.7 bits (79), Expect = 0.050
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR---EEIEALCRNI 57
+ + +K KKK+KK+K+K++ K KKK+ + + + L+ E EA N
Sbjct: 194 AVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANT 253
Query: 58 GIGCALPPPP 67
G A P
Sbjct: 254 VSGTAPDSEP 263
Score = 32.3 bits (73), Expect = 0.32
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R R++ +K K++KKK++K+K+ +++
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 31.2 bits (70), Expect = 0.74
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+++ + KKKK++K+K++KKKKKK
Sbjct: 274 TKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDG 308
Score = 30.4 bits (68), Expect = 1.1
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+K K KKKK++K+K++KKKKKK
Sbjct: 271 AEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 30.0 bits (67), Expect = 1.6
Identities = 8/24 (33%), Positives = 21/24 (87%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+E++ +++ +K K++KKK++K+K+
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKR 109
Score = 28.9 bits (64), Expect = 3.6
Identities = 8/24 (33%), Positives = 21/24 (87%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+E+++ +++ +K K++KKK++K+K
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEK 108
Score = 28.9 bits (64), Expect = 4.0
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K+ K KKKK++K+K++KKKKKK
Sbjct: 268 DAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 28.9 bits (64), Expect = 4.0
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +E KK K KKKK++K+K++KKKK
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKKK 295
Score = 28.5 bits (63), Expect = 5.2
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK 26
+ +++K++K+K++KKKKKK +
Sbjct: 279 KHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 28.5 bits (63), Expect = 5.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ + +KKK++K+K++KKKKKK + + +Q EE
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEE 321
Score = 27.7 bits (61), Expect = 9.7
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
+ + +++ +K K++KKK++K+K+
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGR 111
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 36.6 bits (85), Expect = 0.007
Identities = 15/53 (28%), Positives = 37/53 (69%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R R+K ++K++ ++K++++ +++++KKK E ++ E E+ ++ +EE E L
Sbjct: 26 EEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKL 78
Score = 30.8 bits (70), Expect = 0.52
Identities = 12/55 (21%), Positives = 36/55 (65%), Gaps = 6/55 (10%)
Query: 3 RSRRRKEKKKKKKKKK------KKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ R + E+K+ +++++ ++++KK ++K++ ++ ELE+ +++ +EE E
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Score = 28.5 bits (64), Expect = 3.0
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
KK KK+ K ++K+ ++++ E ++ E E+ ++ +
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGE 41
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 36.6 bits (85), Expect = 0.008
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ R +KKK+ K K K+ KKKKKK T + + + + + E
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSE 125
Score = 36.6 bits (85), Expect = 0.009
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+ +R+E+ KKKK+ K K K+ KKKKK +
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPT 108
Score = 33.5 bits (77), Expect = 0.091
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK----------KKTEIQQME-LEKLQQRHREEI 50
R + R+ ++KK + K +K+K+KKK+K+ K+TE ++ LE+ +++ E+
Sbjct: 155 ERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERINLKSLERYEEQEEEKK 214
Query: 51 EA 52
+A
Sbjct: 215 KA 216
Score = 30.8 bits (70), Expect = 0.65
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 13/58 (22%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKK-------------KKKKKKTEIQQMELEKLQQRHR 47
R +++K K K K+ KKKKKK + KKK I R +
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRK 140
Score = 29.7 bits (67), Expect = 1.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+ + +++ KKKK+ K K K+ KKK + + +
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPK 114
Score = 27.7 bits (62), Expect = 7.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
EK+ +++++ KKKK+ K K K+
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKE 97
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 37.1 bits (87), Expect = 0.009
Identities = 14/47 (29%), Positives = 34/47 (72%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R+ E +K++++ +KK+K+ ++K+++ E ++ ELE+L + +E+E
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145
Score = 31.3 bits (72), Expect = 0.68
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR----HREEIEAL 53
R +++E +K + +K++++ +KK+K+ E +Q ELEK ++ E+++ L
Sbjct: 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
Score = 30.9 bits (71), Expect = 0.84
Identities = 11/40 (27%), Positives = 32/40 (80%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+R +E +KK+K+ ++K+++ +KK+++ E+ + +L++L++
Sbjct: 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 30.5 bits (70), Expect = 1.1
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE----IQQMELEKLQQRHREEIEAL 53
+KE + KK+ + K++ K + + E ++ EL+KL++R ++ E L
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENL 98
Score = 28.2 bits (64), Expect = 6.5
Identities = 10/63 (15%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK--------KTEIQQMELEKLQQRHREEIEALC 54
+++++ +KK+++ ++ +++ ++ E +++ LEK+++ R E L
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLI 175
Query: 55 RNI 57
+ I
Sbjct: 176 KEI 178
Score = 27.8 bits (63), Expect = 7.3
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
R ++K+K+ ++K+++ +KK+++ ++ E Q ELE++ EE
Sbjct: 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155
Score = 27.8 bits (63), Expect = 7.6
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
E++ K+ ++ KK+ + KK+ E ++ E+ KL+ +E+
Sbjct: 37 EEEAKRILEEAKKEAEAIKKEALLEAKE-EIHKLRNEFEKELR 78
Score = 27.8 bits (63), Expect = 8.6
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 21/74 (28%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKK-------KKKKTEIQQME-------------LEKLQ 43
+++ E KK+ + K++ K + ++++ E+Q++E LE L+
Sbjct: 47 AKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE 106
Query: 44 QRHREEIEALCRNI 57
+R EE+E + +
Sbjct: 107 KR-EEELEKKEKEL 119
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 36.2 bits (84), Expect = 0.010
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGC 61
R + K+ K KKK KKK+K K+ E E K +R ++ L + G
Sbjct: 9 ARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRK-AEREIIRLKRLAKK--PGK 65
Query: 62 ALPPPPPTV 70
P +
Sbjct: 66 FYVPAEHKL 74
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 33.4 bits (77), Expect = 0.011
Identities = 10/51 (19%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 7 RKEKKKKKKKKK----KKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ ++ + ++++ ++ ++KKK+++++ E + ELE+ + R+++E L
Sbjct: 1 KDDEYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQL 51
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 34.5 bits (80), Expect = 0.012
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 2 IR---SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
IR SR++KEKK+ K + K+ KK +++K + Q
Sbjct: 55 IRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQ 92
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 35.5 bits (82), Expect = 0.013
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
++++K+ K+ ++K+ K KK+KK + ++ EKL
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL 130
Score = 30.9 bits (70), Expect = 0.41
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKK 29
KE ++K+ K KK+KK+KK+KK
Sbjct: 103 SKETEEKEAIKAKKEKKEKKEKK 125
Score = 29.7 bits (67), Expect = 0.99
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ E+K+ K KK+KK+KK+KK +K ++
Sbjct: 102 VSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 28.2 bits (63), Expect = 3.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K KK+KK+KK+KK +K KKK + + ++ ++ E
Sbjct: 113 KAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
Score = 27.8 bits (62), Expect = 4.6
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
E+ +K++K+ K+ ++K+ K K E + EK +++ E++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKE----KKEKKEKKVAEKLAK 132
Score = 27.0 bits (60), Expect = 7.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
K++KK+KK+KK +K KKK K T+ + K +EE
Sbjct: 114 AKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 36.2 bits (84), Expect = 0.014
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKK 30
+RK K++ KKKK K+ K K KK
Sbjct: 251 KRKSKEEIKKKKPKESKGVKALKKV 275
Score = 35.8 bits (83), Expect = 0.016
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKK 29
+R+ +++ KKKK K+ K K KK
Sbjct: 251 KRKSKEEIKKKKPKESKGVKALKKV 275
Score = 35.8 bits (83), Expect = 0.019
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R+ KE+ KKKK K+ K K KK K
Sbjct: 252 RKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 35.4 bits (82), Expect = 0.026
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R+ ++++ K++ KKKK K+ K K KK
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKKVVA 277
Score = 34.6 bits (80), Expect = 0.043
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
R + + KKKK K+ K K KK K +I
Sbjct: 250 KKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 33.1 bits (76), Expect = 0.13
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ +KK+K K++ KKKK K+ K K +
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
E + +KK+K K++ KKKK K+ K
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESK 267
Score = 28.1 bits (63), Expect = 5.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ + + +KK+K K++ KKKK K+++ + +
Sbjct: 242 EAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 36.2 bits (84), Expect = 0.014
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
K + K+K K ++ K+K++K+ E + E ++L+++ +
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
Score = 35.5 bits (82), Expect = 0.030
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
E K + K+K K ++ K+K++ E+++ E+ Q + +
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Score = 35.1 bits (81), Expect = 0.033
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK--------KTEIQQMELEKLQQRHREEIEA 52
+++R KEK++K+ +++ K++K+ KKK E+ Q E + +++ + +
Sbjct: 280 KAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERG 337
Score = 33.5 bits (77), Expect = 0.11
Identities = 11/43 (25%), Positives = 31/43 (72%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+RK K ++ K+K++K+ +++ K++K+ + + +L +L++ +E
Sbjct: 276 KRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKE 318
Score = 31.2 bits (71), Expect = 0.63
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
E + K + K+K K ++ K+K ++ ELE+ + ++
Sbjct: 265 EYEPINKPVRPKRKTKAQRNKEK---RRKELEREAKEEKQL 302
Score = 31.2 bits (71), Expect = 0.65
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ K+K K ++ K+K++K+ +++ + ++ +KL Q
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
Score = 30.8 bits (70), Expect = 0.84
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 14/62 (22%)
Query: 2 IRSRRRKEKKKKKK--------------KKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
I+ +RRK+ KK K KK+ KKK KKKK ++ + EL +L++ R
Sbjct: 54 IKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSKQVSRKELLRLKKLAR 113
Query: 48 EE 49
+
Sbjct: 114 GK 115
Score = 30.4 bits (69), Expect = 0.95
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT-------EIQQMELEKLQQRHREE 49
R + + K+K++K+ +++ K++K+ KKK EI + +K + R R++
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKK 330
Score = 29.3 bits (66), Expect = 2.3
Identities = 11/49 (22%), Positives = 31/49 (63%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
+ ++ K+K++K+ +++ K++K+ KK Q L+++ + ++ +A R
Sbjct: 280 KAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARAR 328
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 34.9 bits (80), Expect = 0.017
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ + K+ +K +KKKK +KK+ K++ Q+ + +Q+ E+IE
Sbjct: 57 KQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIE 104
Score = 31.4 bits (71), Expect = 0.30
Identities = 15/48 (31%), Positives = 34/48 (70%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R+ ++KKK +KK+ K++K+++++K+ +Q ELEK++ +++ E
Sbjct: 65 DRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKE 112
Score = 29.1 bits (65), Expect = 1.7
Identities = 12/46 (26%), Positives = 31/46 (67%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
I +R++E+++K+ K++K+ +K + KKK + ++ +KL ++ +
Sbjct: 80 IAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTK 125
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 36.4 bits (84), Expect = 0.017
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
KE K + K+++K+K++ K++KKK + + E K ++ E
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE 136
Score = 35.2 bits (81), Expect = 0.031
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMEL-EKLQQRHREE 49
S + +EK+K++ K++KKKKK+K K++ K + E EK + +E+
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 35.2 bits (81), Expect = 0.033
Identities = 16/48 (33%), Positives = 34/48 (70%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ KE++K+K++ K++KKKKK+K K++ + ++ + E ++R +E E
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 34.5 bits (79), Expect = 0.060
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ + ++EKKKKK+K K++ K +K K++ K + E EK +++ EE
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 34.5 bits (79), Expect = 0.071
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ ++ K K++ K +K K++ K+K+ K+K + ++ ++E+ + R E
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163
Score = 34.1 bits (78), Expect = 0.074
Identities = 11/47 (23%), Positives = 31/47 (65%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ ++E K+K+ K+K+K+K+KK ++ + ++ + E+++ + R +
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKP 178
Score = 34.1 bits (78), Expect = 0.087
Identities = 10/42 (23%), Positives = 27/42 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ + K+++K+K++ K++KKKKK + ++ ++ + +E
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 33.3 bits (76), Expect = 0.14
Identities = 12/47 (25%), Positives = 31/47 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ K + K+++K+K++ K++KKKKK+ ++ + K ++ +E+
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 32.2 bits (73), Expect = 0.37
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ RK K++ K+K+ K+K+K+K+KK + + E+ ++R R
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR---EEEKKRERVR 170
Score = 30.6 bits (69), Expect = 0.99
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R +EKK+++ + K + KK KKK + + E EK +Q RE
Sbjct: 157 PRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Score = 29.5 bits (66), Expect = 2.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R++ R +K KKK KKK+ +++K+++ + ++ + + EE E
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEERE 218
Score = 29.5 bits (66), Expect = 2.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+R + + K + KK KKK KKK+ E +Q + + + + E
Sbjct: 164 KKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPE 209
Score = 28.7 bits (64), Expect = 4.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKK---KKKKKTEIQQMELEKLQQRHRE 48
+ + + +K K++ K+K+ K+K K+KK E + E EK ++R R
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171
Score = 27.9 bits (62), Expect = 6.5
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R KEK+K+K+KK ++ + ++++KK++ + +K ++
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 35.7 bits (83), Expect = 0.020
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+E+ ++KK++KKK++++ K K E Q+ EK +++
Sbjct: 280 RQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKK 318
Score = 35.3 bits (82), Expect = 0.026
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 2 IRSRRRKEKKKKKK----------KKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ R +E++K K ++KK++KKK++++ K ++ E KL+++ R+
Sbjct: 261 VDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Score = 31.1 bits (71), Expect = 0.69
Identities = 9/39 (23%), Positives = 23/39 (58%), Gaps = 10/39 (25%)
Query: 3 RSRRRKEKKKKKKKK----------KKKKKKKKKKKKKK 31
+++EKKK++++ +K ++K++KK+ +K
Sbjct: 284 AQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 30.7 bits (70), Expect = 0.86
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 7 RKEKKKKKKKKKKKKK------KKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
R+E+++K K ++++ KK++KKK++ E + +L +QR EE E
Sbjct: 265 REEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKER 316
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 33.4 bits (77), Expect = 0.020
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKK----KKKTEIQQMEL 39
S+ R+ ++ ++KKKKKKK KKK K +KK +QM
Sbjct: 29 ASKVRRISQRNRRKKKKKKKLKKKSKEWILRKK---EQMRR 66
Score = 33.4 bits (77), Expect = 0.020
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 1 MIRSRRRKEKKKKKKKKKKKK----KKKKKKKKK 30
I R R++KKKKKK KKK K +KK++ +++
Sbjct: 34 RISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRR 67
Score = 31.5 bits (72), Expect = 0.10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
K ++ ++ ++KKKKKKK KKK K I + +K Q R R
Sbjct: 28 DASKVRRISQRNRRKKKKKKKLKKKSKEWILR---KKEQMRRR 67
Score = 26.9 bits (60), Expect = 3.6
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 3 RSRRRKEKKKKKKKKK---KKKKKKKKKKKKKT 32
R++K+KKK KKK K +KK++ +++ K+
Sbjct: 39 NRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEV 71
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 35.2 bits (81), Expect = 0.020
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
K KKKK +KKK KK KKKKK + + EL + EE E
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENE 92
Score = 33.6 bits (77), Expect = 0.059
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
I S++ +KKK +KKK KK KKKKK+K E+ ++ E+L
Sbjct: 45 IPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEEL 85
Score = 31.7 bits (72), Expect = 0.32
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
KK KKKK +KKK KK KK + ++ E+ +L + E
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEE 90
Score = 29.0 bits (65), Expect = 2.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
++ ++K+ +KKK KK KKKKK+K++ E+ EL
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSD 87
Score = 28.6 bits (64), Expect = 2.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
E KK KKKK +KKK KKT+ ++ E E++ + EE+
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELS 86
Score = 27.1 bits (60), Expect = 9.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ ++ +KKK KK KKKKK+K++ + + + E+
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEE 90
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 35.3 bits (82), Expect = 0.020
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
++++R+ +K+K ++++K K K +KK + +
Sbjct: 118 QAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRA 151
Score = 34.5 bits (80), Expect = 0.037
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ + ++K K K +KK+K + +K + ++ +L
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Score = 33.4 bits (77), Expect = 0.087
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R E++ KK++ +K+K ++++K
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKP 138
Score = 33.0 bits (76), Expect = 0.12
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R +++ KK++ +K+K ++++K K
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPK 139
Score = 31.0 bits (71), Expect = 0.47
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
RR ++ K K +KK+K + +K + + EL Q
Sbjct: 133 RRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQA 172
Score = 28.4 bits (64), Expect = 3.4
Identities = 4/26 (15%), Positives = 17/26 (65%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + ++ +++ KK++ +K+K ++
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRR 134
Score = 27.6 bits (62), Expect = 7.2
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K K + ++ +++ KK++ +K+K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAP 132
Score = 27.2 bits (61), Expect = 9.3
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R + K +KK+K + +K + + +E+
Sbjct: 136 RKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 34.3 bits (79), Expect = 0.023
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMEL 39
+R+ K ++++ +K +K+ KK KK + Q+ L
Sbjct: 98 ARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQLSL 133
Score = 28.1 bits (63), Expect = 3.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+ +++K + +K+ QQ EL K+Q+R
Sbjct: 84 VNHTVELTEEEKAEARKEALKAYQQEELRKIQKRS 118
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 35.4 bits (82), Expect = 0.026
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKK---KKKTEIQQMELEKLQQRHREEIE 51
IR+ K KKKKKKKKK KK K KK K++ + + + ++R +++I+
Sbjct: 248 IRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 33.4 bits (77), Expect = 0.026
Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 7/42 (16%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ R+ +EK +++++ K+ K K++ EI++ LEK+++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKRE------EIEEK-LEKIKK 35
Score = 29.5 bits (67), Expect = 0.57
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+++R +E K+ K K+++ ++K +K KK ++ +L
Sbjct: 8 KAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLS 45
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 33.2 bits (76), Expect = 0.029
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R+K+KK+ K + K KK +KK KK + E+ ++R E+
Sbjct: 24 RKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTED 67
Score = 31.7 bits (72), Expect = 0.12
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
I+ R++K+K+ K + K KK +KK KKK E E ++ R E
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDE----FPEFPEESKRRRTE 66
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 33.8 bits (78), Expect = 0.031
Identities = 12/48 (25%), Positives = 33/48 (68%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
E+K+++K+++K++K++K++K+K+ ++ E+ ++R E +A
Sbjct: 11 IIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKA 58
Score = 33.8 bits (78), Expect = 0.037
Identities = 12/51 (23%), Positives = 34/51 (66%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
R + ++K+++K+++K++K++K++K+ E + ++K ++ R E +N
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
Score = 33.0 bits (76), Expect = 0.062
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
I K ++K+++K++K++K++K+K+ K +Q+ E EK + +
Sbjct: 11 IIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ R++++K++K++K+K+ K +K++ E + ELEK +
Sbjct: 17 KREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
Score = 28.8 bits (65), Expect = 1.8
Identities = 11/48 (22%), Positives = 32/48 (66%), Gaps = 6/48 (12%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKK------KKKKKKKKKTEIQQMELEKL 42
R + +EK++K++K++K+K+ +K++++K+ E+++ + + L
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPL 63
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 34.8 bits (80), Expect = 0.031
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 6 RRK------EKKKKKKKKKKKKKKKKKKKKKKT 32
RRK EKKKK K KK K K KK + KKK
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 33.7 bits (77), Expect = 0.057
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K+KK K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 31.7 bits (72), Expect = 0.26
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
+K+K K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQ 36
KKKK K KK K K KK + K + ++
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 29.0 bits (65), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKK 28
+++K K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.6 bits (64), Expect = 3.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKK 29
++K+ K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.9 bits (62), Expect = 4.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
I RR+ +KKKK K KK K K KK +
Sbjct: 78 ISWRRKPATTAVEKKKKGKSKKNKLKGKKDED 109
Score = 27.5 bits (61), Expect = 7.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKK 26
+ ++ K KK K K KK + KKK +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKK 27
+++ + KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 33.0 bits (76), Expect = 0.032
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
KE K+K + KKKKK+K KK +
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDE 62
Score = 33.0 bits (76), Expect = 0.034
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+ ++K + KKKKK+K KKK+ E
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 31.8 bits (73), Expect = 0.081
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ K+K + KKKKK+K KKK+
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.9 bits (68), Expect = 0.36
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ ++K + KKKKK+K KKK+ +
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 29.9 bits (68), Expect = 0.42
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+E+K+ K+K + KKKKK+K + ++ E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 34.6 bits (80), Expect = 0.035
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+RKE+ KKK K +K K+ +KK L KL + ++
Sbjct: 158 KRKERAAAYYKKKVKLRKAWKEARKK------ALAKLPKAIVAVLKKF 199
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 34.7 bits (80), Expect = 0.036
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKK 28
SR+RK KK KK KK+K+K+
Sbjct: 223 PSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 34.3 bits (79), Expect = 0.053
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
S RK K KK KK KK+K+K+ M
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQKRSPPPPFNMV 256
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
+K+K KK KK KK+K
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQ 245
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 35.2 bits (81), Expect = 0.036
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
I ++ +K K KKK KK KKK+ K+ K E + E E
Sbjct: 142 IETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDES 181
Score = 34.8 bits (80), Expect = 0.043
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
I K KK K KKK KK KKK+ K+ + ++ + + + E E
Sbjct: 138 KILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAE 188
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is
a small protein module with a triple-stranded
beta-sheet fold. This is a family of WW domain binding
proteins.
Length = 78
Score = 32.6 bits (75), Expect = 0.037
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE-----------KLQQRHREEIEAL 53
R+++KKK+ KK K +++ +++ K K +++ E KL+ +++++ L
Sbjct: 11 RKEQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKKL 69
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 33.3 bits (76), Expect = 0.038
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
S+ +K +K K K KKK KKKKK++ E+L + R+E+
Sbjct: 8 SKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPR 56
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.9 bits (81), Expect = 0.039
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
E+KK +KK++K +KK +K++ +K ++
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKK 437
Score = 34.5 bits (80), Expect = 0.068
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+ R+K +KK++K +KK +K++ +K K + +
Sbjct: 409 AERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAA 443
Score = 32.2 bits (74), Expect = 0.30
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R ++RK +KK +K++ +K KKK +
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAA 443
Score = 32.2 bits (74), Expect = 0.32
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ KE+ +K KKK + KK K E
Sbjct: 424 KAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 32.2 bits (74), Expect = 0.37
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
++KK +KK++K +KK +K E ++ +K +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAA 442
Score = 31.8 bits (73), Expect = 0.46
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R + RK+++K +KK +K++ +K KKK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKA 439
Score = 31.4 bits (72), Expect = 0.52
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
R++ KK++K +KK +K++ +K KK + K
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 31.1 bits (71), Expect = 0.74
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
++KK +KK++K +KK +K+ + +K + +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
++KK +KK++K +KK +K++ + + + E
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 30.3 bits (69), Expect = 1.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ ++ EK++ +K KKK + KK K
Sbjct: 420 KAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 28.7 bits (65), Expect = 3.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
++KK +KK++K +KK +K++ E + +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAA 442
Score = 28.4 bits (64), Expect = 5.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ + + +K KKK + KK K +T
Sbjct: 424 KAEKEEAEKAAAKKKAEAAAKKAKGPDGET 453
Score = 27.6 bits (62), Expect = 8.3
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++E +K KKK + KK K
Sbjct: 427 KEEAEKAAAKKKAEAAAKKAKGPDGET 453
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.5 bits (81), Expect = 0.040
Identities = 7/46 (15%), Positives = 23/46 (50%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K + + + + ++K + +KK E + + + +++ E+ +A
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
Score = 34.3 bits (78), Expect = 0.084
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+++ E+ KK + K + + + + E + EK ++ +++ +A
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 34.0 bits (77), Expect = 0.10
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+++ E K + + + + ++K + E ++ E +K +++ E
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
Score = 33.2 bits (75), Expect = 0.19
Identities = 5/49 (10%), Positives = 23/49 (46%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + + + + ++K + +KKK+ ++ + K + +++ +
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
Score = 32.0 bits (72), Expect = 0.39
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++ E + + ++K + +KKK++ + + +K + ++ EA
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
Score = 31.6 bits (71), Expect = 0.66
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 5 RRRKEKKKKK----KKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+++ E+ KKK KKK ++ KK + K + E E E +++
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 31.3 bits (70), Expect = 0.80
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 5 RRRKEKKKKKKKKKKKK----KKKKKKKKKKTEIQQMELEK 41
++ ++ KKK ++ KKK KKK ++ KK E + E E
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Score = 31.3 bits (70), Expect = 0.82
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM-ELEKLQQRHREE 49
++ +E KK + KK ++KKK + KK E+++ E +K ++ + E
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Score = 30.9 bits (69), Expect = 1.00
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 6 RRKEKKKKK----KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+++ ++ KK KKK+ ++KKK ++ KK E +++ E+ ++ E+
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Score = 30.5 bits (68), Expect = 1.3
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ +E+ K K ++ KK+ ++ KKK ++ + + E +K+ +EE
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
Score = 30.5 bits (68), Expect = 1.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 6 RRKEKKKKKK----KKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+K ++ KKK KK ++ +KK + KK + + E+L+++ EE +
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 30.1 bits (67), Expect = 1.9
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
++ +E +KK + KK+ ++ KK ++ + + E +K ++ + E E
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Score = 30.1 bits (67), Expect = 1.9
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ +E KK ++ KKK ++ KK ++ +K + ++ E + + EE++
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Score = 30.1 bits (67), Expect = 1.9
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
++ E+ KKK ++ KK ++ +KK + + + E +K ++ ++E E
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
Score = 30.1 bits (67), Expect = 2.0
Identities = 6/49 (12%), Positives = 24/49 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
++ + + ++K + +KKK++ K + + + +++ +E +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Score = 29.7 bits (66), Expect = 2.1
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM--ELEKLQQRHREEIEAL 53
+ +E KK+ ++ KKK ++ KK +++K +I + E EK + R+E EA+
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
Score = 29.7 bits (66), Expect = 2.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K+K ++KKK + KKK ++ KKK E+++ K
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Score = 29.7 bits (66), Expect = 2.3
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 5 RRRKEKKKKKKKKKKK---KKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ KKK ++ KK K + + + E + + E +++ E
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Score = 29.3 bits (65), Expect = 3.0
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 4 SRRRKEKKKKKK---KKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ ++KE+ KKK KKK ++KKK + KKK E + + ++L++ + +A
Sbjct: 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
Score = 29.0 bits (64), Expect = 3.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 5 RRRKEKKKKKKKKKKK----KKKKKKKKKKKTEIQQMELEK 41
++ ++ KKK ++ KK KKK ++ KKK E ++ K
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
Score = 29.0 bits (64), Expect = 4.0
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 5 RRRKEKKKKKKKKKKKK----KKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++ ++ KKK ++ KKK KK + KKK E ++ E K ++ EA
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEA 1533
Score = 29.0 bits (64), Expect = 4.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++ E KK ++KKK + KKK ++ KK + E +K + +++ +A
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKAD----EAKKKAEEAKKKADAA 1334
Score = 28.6 bits (63), Expect = 4.7
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 3 RSRRRKEKKKKKKKKKKKKK---KKKKKKKKKTEIQQMELEKLQQRHRE 48
+ + E +KKK++ KKK KKK ++KKK + + + E+ +++ E
Sbjct: 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Score = 28.6 bits (63), Expect = 5.3
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKK-KKKTEIQQMELEKLQQRHREEIEA 52
++ +EKKK + KKK ++ KK + KKK E + + + +++ E +A
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Score = 28.6 bits (63), Expect = 5.3
Identities = 12/51 (23%), Positives = 31/51 (60%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
+++ E+ KK +++ K K ++ KK ++ + + E +K ++ ++ EAL +
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
Score = 28.6 bits (63), Expect = 6.1
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++ +EKKK + KKK ++ KK + KK + + E+ +++ E +A
Sbjct: 1425 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472
Score = 28.2 bits (62), Expect = 6.3
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKK----KKKTEIQQMELEKLQQRHREE 49
+ E ++K + +KKK++ KKK KKK E ++ + ++ +++ E+
Sbjct: 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-EKKKADEAKKKAEED 1403
Score = 28.2 bits (62), Expect = 6.6
Identities = 11/51 (21%), Positives = 30/51 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
++ + KK+ ++ KK ++ KKK+ + + + EL+K ++ ++ + E +
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Score = 28.2 bits (62), Expect = 7.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ KKK + KKK ++KKK + KK + + ++ +++ E +A
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
Score = 28.2 bits (62), Expect = 7.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 5 RRRKEKKKKK----KKKKKKKKKKKKKKKKKTEIQQM-ELEKLQQRHREEIEA 52
+++ E+ KKK KK KKK + KKK E ++ E +K + ++ EA
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
Score = 28.2 bits (62), Expect = 7.6
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKK--KKKTEIQQMELEKLQQRHREEIEA 52
+++ E+ KK + KKK ++ KK KKK E + + ++ ++ + +A
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
Score = 27.8 bits (61), Expect = 8.7
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
++ E KKK ++ KKK + KK K + + + + +++ +E +
Sbjct: 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Score = 27.8 bits (61), Expect = 9.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
++ +EKKK + KK ++ KK ++KKK E ++ E +K + E
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Score = 27.8 bits (61), Expect = 9.3
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+++ E+ KKK+ ++KKK ++ KK +++ +I+ E K + +++ E
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Score = 27.8 bits (61), Expect = 9.9
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++ +E KK + KKK ++ KK ++ KK + + ++ +++ E +A
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 33.9 bits (78), Expect = 0.040
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
RR + K KK++ +K+K+K+++ K E ++ E ++ + E +
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAE--LEKKKAEAK 116
Score = 33.5 bits (77), Expect = 0.050
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R+K K+K ++ K K KK++ +K+K+K E + M+ ++ R E+E
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEE-RFMKALAEAEKERAELE 109
Score = 31.6 bits (72), Expect = 0.20
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
R + + KK++ +K+K+K+++ K + E ++ ELEK
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEK 110
Score = 31.6 bits (72), Expect = 0.21
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKK--KKKTEIQQMELEKLQQRHREEIEA 52
S+R + +KK K+K ++ K K KK++ K+K + ++ + +E E
Sbjct: 56 TAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEA-EKERAEL 108
Score = 27.7 bits (62), Expect = 5.2
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 8 KEKKKKKKKKKKKKKKKKKK---KKKKTEIQQMELEK 41
KEK+K+++ K + +K++ +KKK E + M+ EK
Sbjct: 86 KEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEK 122
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It
is a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 34.7 bits (80), Expect = 0.041
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH------REEIEALCRNI 57
+ + K+ K+ +K KK +K+ E Q E +KLQ H R ++E+LCR +
Sbjct: 30 RLAELLKEMKRLEKDLKKLQKRGEQLQKEKDKLQSEHSKAILARSKLESLCREL 83
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 31.8 bits (73), Expect = 0.042
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+R R EK +K+K+KK +K+++KK
Sbjct: 32 LRRREFYEKPSEKRKRKKAAARKRRRKKL 60
Score = 29.1 bits (66), Expect = 0.48
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
RRR+ +K +K+K+KK +K+++KK ++
Sbjct: 33 RRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R RR+E +K +K+K+KK +K+++K
Sbjct: 29 LRELRRREFYEKPSEKRKRKKAAARKRRRK 58
Score = 25.6 bits (57), Expect = 8.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 4 SRRRKEKKKKKKKKKKKKKKK 24
S +RK KK +K+++KK +
Sbjct: 42 SEKRKRKKAAARKRRRKKLAR 62
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 32.6 bits (75), Expect = 0.044
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKK 30
R KE+++K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKK 91
Score = 31.8 bits (73), Expect = 0.10
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKT 32
R +++++K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKV 92
Score = 29.9 bits (68), Expect = 0.46
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R ++E++K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 27.6 bits (62), Expect = 3.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKK 29
R + + K KKK KK + ++ KKK
Sbjct: 67 RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.0 bits (58), Expect = 8.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEI 34
K++++K KKK KK + ++ K ++
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKV 92
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 34.6 bits (80), Expect = 0.047
Identities = 17/44 (38%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME--LEKLQ 43
++S+ ++ +K + K+KKK+KKK++KKK +I+++E +EKL+
Sbjct: 313 LKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLE 356
Score = 34.2 bits (79), Expect = 0.076
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ E K+KKK+KKK++KKKK+ ++ + I+++E++
Sbjct: 322 EKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQA 359
Score = 28.5 bits (64), Expect = 4.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE----KLQQRHREEIEAL 53
MI K+K K K ++ +K + K + ++ + E K +R E IE L
Sbjct: 299 MILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKL 355
Score = 28.1 bits (63), Expect = 6.0
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ K+K+KKK++KKKK+ ++ +++ +K E+Q + E+ +
Sbjct: 329 KEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENKT 367
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 34.2 bits (79), Expect = 0.047
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ KKKKKKKKKK KK +
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEAT 205
Score = 33.9 bits (78), Expect = 0.074
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
++R +E+ KKKKKKKKKK KK E
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSSAEATV 206
Score = 31.5 bits (72), Expect = 0.45
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+ ++++ KKKKKKKKKK KK T
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSSAEA 204
Score = 31.2 bits (71), Expect = 0.55
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
KKKKKKKKKK KK +
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPT 212
Score = 30.8 bits (70), Expect = 0.81
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 7 RKEKKKKKKKK------KKKKKKKKKKKKKKTEI 34
+E+ + K + KKKKKKKKKK KK
Sbjct: 165 TEEEVELLKARLEEERAKKKKKKKKKKTKKNNAT 198
Score = 28.5 bits (64), Expect = 3.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R++++K+KKKKK KK +
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSS 208
Score = 28.1 bits (63), Expect = 5.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++K+KKKKKK KK + +
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSA 209
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 33.0 bits (76), Expect = 0.051
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH--REEIEAL 53
+ RR K +K+ K +K+KKKKKKK + + Q R R E+ L
Sbjct: 58 KGRRPKTARKESVAAKAAEKEKKKKKKK----ELKNFYRFQIRESKRNELAEL 106
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 33.0 bits (76), Expect = 0.056
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 8/42 (19%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKK--------KKKKTEIQQM 37
+R + K K+K+KKKKKKK+ + +KKK E+ ++
Sbjct: 66 AREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAEL 107
Score = 31.5 bits (72), Expect = 0.15
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE---KLQQRH--REEIEAL 53
R R+ + +++ + K K+K+KKKKKKK ELE + Q R +EE+ L
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKK------ELEDFYRFQIREKKKEELAEL 107
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 33.0 bits (76), Expect = 0.056
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 16/63 (25%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKK--------KKKKKTEIQQMELEKLQQRH---REEI 50
SR + ++++K K+KKKKKKK+ ++KKK E+ + L+++ ++ I
Sbjct: 65 GASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAE-----LRKKFEEDKKRI 119
Query: 51 EAL 53
E L
Sbjct: 120 EQL 122
Score = 28.7 bits (65), Expect = 1.8
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE---KLQQR--HREEIEAL 53
R +K+K + K ++++K K+K + ++ ELE + Q R +EE+ L
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAEL 108
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 34.0 bits (78), Expect = 0.063
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ KEK K +KK KK K K K K K K +++ K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 29.8 bits (67), Expect = 1.5
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K+ K K K K K K K K + K K + +
Sbjct: 94 PKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAA 131
Score = 28.6 bits (64), Expect = 3.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+ K K K K K K + K KK K +
Sbjct: 100 KPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAA 131
Score = 27.4 bits (61), Expect = 9.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+ K+K K +KK KK K K K K
Sbjct: 80 TPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 34.6 bits (80), Expect = 0.064
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + K K KKK K + KK E + + + ++I+ L
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVL 127
Score = 30.7 bits (70), Expect = 1.0
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ KKK K K K KKK K E
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
S K+K K K K KKK K + +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELD 101
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ KKK K K K KKK +
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Score = 29.2 bits (66), Expect = 3.1
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
K K KKK K + KK + +
Sbjct: 78 KTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Score = 28.8 bits (65), Expect = 3.6
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+K+ K K K KKK K +
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
Score = 28.4 bits (64), Expect = 5.8
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ KKK K K K KKK +
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 34.0 bits (78), Expect = 0.078
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 3 RSRRRKEKKK--------KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R + RK K+ +K K++K+ +K + + E+ M +E Q R E
Sbjct: 248 RCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEP 302
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 34.2 bits (78), Expect = 0.079
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++R R++KK+K++ KK K KK++K E
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKE 589
Score = 31.5 bits (71), Expect = 0.63
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
RRK+K+K++ KK K KK++K K ++ + +
Sbjct: 562 ERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKS 598
Score = 30.7 bits (69), Expect = 1.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R RR+K++K++ KK K KK++K K+
Sbjct: 561 RERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGV 594
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 33.9 bits (78), Expect = 0.079
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ + E+ KK++ + ++KKK+KK K + Q
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 32.0 bits (73), Expect = 0.34
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
++ + K K K ++ KK++ + ++KKK + + E LQ
Sbjct: 353 LKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 31.6 bits (72), Expect = 0.45
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R ++ + + ++KKK+KK K +++ +
Sbjct: 367 ERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 30.8 bits (70), Expect = 0.91
Identities = 7/47 (14%), Positives = 20/47 (42%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
I + K K K K ++ KK++ + ++ + ++ + +
Sbjct: 349 RIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 32.5 bits (74), Expect = 0.090
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
R+ KK KKK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKNLA 124
Score = 30.6 bits (69), Expect = 0.37
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKK 31
+++ KK KKK++KKKKKKK K
Sbjct: 100 QRQAKKLKKKREKKKKKKKGAK 121
Score = 30.6 bits (69), Expect = 0.37
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+++ KK KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKN 122
Score = 29.8 bits (67), Expect = 0.65
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+ + KK KKK++KKKKKKK K
Sbjct: 100 QRQAKKLKKKREKKKKKKKGAKNL 123
Score = 29.8 bits (67), Expect = 0.74
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKT 32
+++ KK KKK++KKKKKKK
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGA 120
Score = 29.8 bits (67), Expect = 0.76
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
++ KK KKK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKNLA 124
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKK 29
++R+ +K KKK++KKKKKKK K
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 27.5 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK 26
R ++ +KK++KKKKKKK K
Sbjct: 101 RQAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 34.3 bits (79), Expect = 0.091
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
I ++ KKKKKK+KKK+++ K+++K + EI +
Sbjct: 737 ISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEA 772
Score = 32.8 bits (75), Expect = 0.24
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
E+K KKKKKK+KKK+++ K+++K I+ E
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 32.4 bits (74), Expect = 0.38
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 3 RSRRRKEKKKKKK---KKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
S ++K ++ + KK+K KK+ K TE EL+ +R+
Sbjct: 1547 ESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEA---ELDFFLKRY 1590
Score = 29.7 bits (67), Expect = 2.4
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMEL 39
+ ++K KKKKKK+KKK+++ K+ E ++E+
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 28.1 bits (63), Expect = 7.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
+ R+ K+ + K ++K KKKKKK+KK E E K +++ R EI
Sbjct: 724 IFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKE----EEYKREEKARIEI 769
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 34.0 bits (78), Expect = 0.092
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+S K K K KKK K K KK KK+
Sbjct: 756 KSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785
Score = 32.9 bits (75), Expect = 0.20
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+K K KKK K K K KKK K + ++
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKK 778
Score = 31.3 bits (71), Expect = 0.73
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
S + K K KKK K K KK KK+ L +
Sbjct: 757 SASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYTPSPALAAM 797
Score = 30.6 bits (69), Expect = 1.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMEL 39
++K K K K KKK K K KK T+ + L
Sbjct: 754 KKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPL 787
Score = 30.6 bits (69), Expect = 1.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ + K K KKK K K KK KK+
Sbjct: 755 KKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.2 bits (68), Expect = 1.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+++++ K K K KKK K K KK
Sbjct: 751 TKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 29.8 bits (67), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+++ +K+ K K K KKK K K KKT
Sbjct: 750 KTKAKKKSASTKGKAAKTVKKKSKAKSKKT 779
Score = 29.4 bits (66), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ K KKK K K K KKK K K++
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSK 777
Score = 29.0 bits (65), Expect = 3.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K K K KKK K K KK KK
Sbjct: 754 KKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
Score = 28.6 bits (64), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
++K K KKK K K K KKK++
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSK 773
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 33.5 bits (77), Expect = 0.094
Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 8 KEKKKKKKKKK----KKKKKKKKKKKKKTEIQQMELEKLQQR 45
KE+++++ +++ + ++ + K+K E Q+ E E+ + R
Sbjct: 123 KEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHR 164
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 34.2 bits (78), Expect = 0.095
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ ++ +K+ KK +K+ KK+K++ ++ E + ELE ++ EE E L
Sbjct: 314 EEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQL 362
Score = 33.8 bits (77), Expect = 0.11
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
RRK ++K K+ +K+ KK +K+ KK + + ELEK + + EA
Sbjct: 307 ERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAE 355
Score = 33.8 bits (77), Expect = 0.13
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
+ + K++ KK + + K+K + ++ + ++ KL + + ++ L R+
Sbjct: 198 LQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRD 249
Score = 30.7 bits (69), Expect = 0.96
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K ++ K K++ KK + + K+K ++ L + EE L
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242
Score = 30.7 bits (69), Expect = 1.1
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
KEK++ ++ +K+ K+ + K++ ++ E +Q+E + + EE
Sbjct: 333 KEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Score = 29.9 bits (67), Expect = 1.7
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K+KKK++ KK ++ + + + + + + +AL
Sbjct: 169 KRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL 211
Score = 29.6 bits (66), Expect = 2.4
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + ++ K K++ KK + + K+K + E + + + + E I+ L
Sbjct: 191 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLL 243
Score = 28.4 bits (63), Expect = 5.9
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
KE++ K + KK++ +++KK+ + I E+ QR +E +E
Sbjct: 986 EKEERYNKDELKKERLEEEKKELLREII-----EETCQRFKEFLELF 1027
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 34.1 bits (78), Expect = 0.098
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+KKKKKKK K+KKKKK ++ Q LE +++
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALENIEE 715
Score = 33.7 bits (77), Expect = 0.14
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 17/54 (31%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKK-----------------KKTEIQQMELEK 41
RK+KKKKK K+KKKKK ++ K+ K +E Q++LEK
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEK 735
>gnl|CDD|221659 pfam12597, DUF3767, Protein of unknown function (DUF3767). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 112 and 199 amino
acids in length.
Length = 119
Score = 32.3 bits (74), Expect = 0.098
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R RRRK + KK + +KK KK ++K E
Sbjct: 89 RYRRRKSFQGMKKAVEAMAEKKAKKLREKEE 119
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth
in archaea or eukaryotes, but is found in mitochondria
or chloroplasts of some eukaryotic species.
Length = 179
Score = 33.0 bits (76), Expect = 0.10
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM------ELEKLQQRHREEI 50
IR+ RR K KK +K+K+ + + KK + ++Q++ ++++L + +E+
Sbjct: 124 IRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKEL 178
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 32.6 bits (75), Expect = 0.10
Identities = 8/34 (23%), Positives = 24/34 (70%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
++ +K+ K K++K+++ ++K+ EI + +++ L
Sbjct: 121 DELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 31.9 bits (73), Expect = 0.17
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+ +K+ K K++K+++ ++K+K+ +QM
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEILKEQM 151
Score = 29.2 bits (66), Expect = 1.7
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
++ K K++K+++ ++K+K+ K++
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQ 150
Score = 28.0 bits (63), Expect = 4.2
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKT 32
K K++K+++ ++K+K+ K++ K
Sbjct: 128 LAKLKREKRRENERKQKEILKEQMKML 154
Score = 27.6 bits (62), Expect = 4.4
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKK 30
+ K K++K+++ ++K+K+ K++
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQ 150
Score = 27.6 bits (62), Expect = 4.7
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K++K+++ ++K+K+ K++ K
Sbjct: 126 KELAKLKREKRRENERKQKEILKEQMK 152
Score = 27.3 bits (61), Expect = 6.3
Identities = 12/50 (24%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM---ELEKLQQRHREEIE 51
R+ KK+K+++++++ + ++ ++ +I ++ EL KL++ R E E
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 27.3 bits (61), Expect = 7.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
E+++ + +K+ K K++K+++ E +Q E+ K Q +
Sbjct: 115 DEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 31.1 bits (71), Expect = 0.11
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 6 RRKEKKKKKKKKKKKKKKK--KK----KKKKKTEIQ--------QMELEKLQQRHREEIE 51
R + K +KK + +K +K KK K KKK + + LE+++++ R++ E
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEE 60
Score = 27.2 bits (61), Expect = 2.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKK---------KKKKKTEIQQ--MELEKLQQRHREEI 50
+ RK +K+ KK K KKKK K++ EI++ + E+ ++R +E
Sbjct: 10 VAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEEEKERRKEAR 69
Query: 51 EA 52
+A
Sbjct: 70 KA 71
Score = 26.1 bits (58), Expect = 8.3
Identities = 6/26 (23%), Positives = 22/26 (84%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
++RK++++K+++K+ +K ++ + +K+
Sbjct: 54 KKRKQEEEKERRKEARKAERAEARKR 79
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 33.8 bits (78), Expect = 0.11
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 8 KEKKKKKKKK-----KKKKKKKKKKKKKKTEIQQMELEKLQQRHR---EEIEALCRNIGI 59
+++KK +K K+ K+ + + K + EI+ ELEK +EI L + G
Sbjct: 414 QKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK--ELEKQLTNIEPTADEINKLLKAYGF 471
Query: 60 G 60
G
Sbjct: 472 G 472
Score = 29.2 bits (66), Expect = 3.1
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
+ +E KK+ KK ++K ++ + + +KK E + K + +++
Sbjct: 95 AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL 140
Score = 28.8 bits (65), Expect = 3.6
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIG 60
+K+KK +K +K+ + + E++ L++ +E+E NI
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKE-IKELEKQLTNIEPT 458
Score = 27.7 bits (62), Expect = 9.5
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
+ + ++ KK+ KK ++K ++ + + E ++ ELEK + + ++
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKA 136
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.6 bits (78), Expect = 0.12
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 IRSRRRKEKKKK-KKKKKKKKKKKKKKKKKKTEIQ 35
+++ E +K+ K +KK+KKKKK+K+K+ E++
Sbjct: 604 VKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 32.5 bits (75), Expect = 0.31
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 1 MIRS----RRRKEKKKKK--KKKKKKKKKKKKKKKKKTEIQQME---LEKLQQRHREEIE 51
+I S R E+K ++ K+ +K K++ ++KK ++Q+ E LE+ ++ ++ I+
Sbjct: 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580
Query: 52 A 52
Sbjct: 581 E 581
Score = 29.0 bits (66), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
K +K KKKKKKK K K K + E+
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPRTVSLEL 707
Score = 28.6 bits (65), Expect = 4.9
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 14 KKKKKKKKKKKKKKKKKKTEIQQMEL----EKLQQRHREEIEAL 53
+++ ++K ++ + K+ E + EL EKLQ+ + +E
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571
Score = 28.3 bits (64), Expect = 6.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
S + E + +K+ K +KK+KKKKK+ E Q+
Sbjct: 601 YASVKAHELIEARKRLNKANEKKEKKKKKQKEKQE 635
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 33.6 bits (77), Expect = 0.12
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
R EKK K K KK +K KK K +I
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 32.8 bits (75), Expect = 0.21
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R K+ K K KK +K KK K +K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 30.5 bits (69), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+ +KK K K KK +K KK + Q++
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIA 798
Score = 29.7 bits (67), Expect = 2.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKK 29
R ++ + K KK +K KK K +K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 28.2 bits (63), Expect = 5.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+K K K KK +K KK K +K
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIA 798
Score = 27.8 bits (62), Expect = 7.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ + KK +K KK K +K T
Sbjct: 775 AKPKAAKKDARKAKKPSAKTQKIAAAT 801
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.5 bits (77), Expect = 0.12
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR--EEIEALCRNI 57
+++ K+ ++K+++ ++ KKK E+++ LE+L++RH EE +A +
Sbjct: 320 EEEINGIEERIKELEEKEERLEELKKKLKELEK-RLEELEERHELYEEAKAKKEEL 374
Score = 30.8 bits (70), Expect = 1.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM------------ELEKLQQRHREEIEA 52
R +E KK+ ++ ++K K+ K+ K+K E ++ E+EK R EEI
Sbjct: 266 ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEING 325
Query: 53 LCRNI 57
+ I
Sbjct: 326 IEERI 330
Score = 30.4 bits (69), Expect = 1.2
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MIRSRRRK-EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ ++ E+ K++ ++ +K+ + + K+K E + ELE+ + ++EIE L
Sbjct: 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
Score = 28.1 bits (63), Expect = 7.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR------HREEIEAL 53
+E K+K+K+ ++ ++ + + + ELEKL++ +EEIE L
Sbjct: 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243
Score = 28.1 bits (63), Expect = 7.6
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
R +K+ +K +K+ ++ +K K EI++ E+ K+ R E
Sbjct: 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEE-EISKITARIGE 416
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 32.7 bits (75), Expect = 0.13
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
++++ KEK +K +K+ + +K ++ K K E
Sbjct: 37 KYQAKKEKEKAEKMRKRYPELEKIFRELKSKFEFT 71
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 31.9 bits (73), Expect = 0.14
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ RKE K ++KK + K+K K KKK
Sbjct: 107 KARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 3 RSRRRK-EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
R R KKKK +K +K+ K ++KK + E ++ +K
Sbjct: 92 RLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKK 131
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 31.9 bits (73), Expect = 0.14
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
R K+ K KKK K +K +KK K++ + E +Q
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQAL 58
Score = 30.8 bits (70), Expect = 0.36
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ RS++ + KKK K +K +KK K++ + +K + + K
Sbjct: 24 LSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 29.6 bits (67), Expect = 0.83
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+ KK K KKK K +K +KK K +++ + + L++
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGR 62
Score = 29.6 bits (67), Expect = 0.84
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
I SR +K K KKK K +K +KK K++ +
Sbjct: 23 ILSRSKKLLKAKKKLKSEKLEKKAKRQLRA 52
Score = 29.3 bits (66), Expect = 1.0
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ EKK K++ + +K++ +K + K + +E E+ ++
Sbjct: 41 KLEKKAKRQLRAEKRQALEKGRVKPVLPEDLEKERRLRK 79
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
+ KK K KKK K +K +KK + E + ++ R
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGR 62
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 32.0 bits (73), Expect = 0.15
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+KK KK K KK K KK+K +T ++
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKVRTSVR 34
Score = 30.4 bits (69), Expect = 0.56
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
K+ KKK KK K KK K KK+K
Sbjct: 5 KKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEI 34
KK KKK KK K KK K KK ++
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKV 29
Score = 27.4 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
+K KKK KK K KK K KK+
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRK 28
Score = 27.4 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
K KK KKK KK K KK K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVK 25
Score = 27.4 bits (61), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+++ K+K KK K KK K KK+K + +
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTS 32
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 33.1 bits (76), Expect = 0.15
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ ++K K +K K ++ +KK KK + +
Sbjct: 337 KLAVLAQEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 30.8 bits (70), Expect = 0.84
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ RK ++K K +K K ++ + + ++ L K+ + + I+A
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K +K K ++ +KK KK + K
Sbjct: 341 LAQEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ + +K K ++ +KK KK + K K
Sbjct: 343 QEKATAKGAQKVKNRRARKKAKKARLAKVAKA 374
Score = 27.7 bits (62), Expect = 7.8
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +++ K +K K ++ +KK KK +
Sbjct: 338 LAVLAQEKATAKGAQKVKNRRARKKAKKAR 367
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 32.4 bits (74), Expect = 0.15
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
R+K+K + K +K+ K+K +KKK I
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINI 30
Score = 31.6 bits (72), Expect = 0.28
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R++K+ + K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 30.5 bits (69), Expect = 0.63
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R +++ K +K+ K+K +KKK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKINI 30
Score = 28.9 bits (65), Expect = 2.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ + R K +K+ K+K +KKK I
Sbjct: 4 KKKNRSSNYKVNRKRLKRKDRKKKINIIGNPI 35
Score = 27.8 bits (62), Expect = 4.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
R K +K+ K+K +KKK I +
Sbjct: 7 NRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKN 39
Score = 27.4 bits (61), Expect = 6.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQ 35
+KKKK + K +K+ K+ + +
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRK 25
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 33.2 bits (77), Expect = 0.15
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
K+ K +K K++ +K K T
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDGKAT 859
Score = 32.8 bits (76), Expect = 0.20
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTE 33
K KK K +K K++ +E
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASE 853
Score = 32.8 bits (76), Expect = 0.23
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + + K KK K +K +
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 32.5 bits (75), Expect = 0.26
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ EK + K KK K +
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFS 842
Score = 32.5 bits (75), Expect = 0.31
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ KK K +K K++ +K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 32.1 bits (74), Expect = 0.43
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K+ KK K +K K++ + +
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 31.7 bits (73), Expect = 0.45
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R + K KK K +K K++
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQQ 848
Score = 31.7 bits (73), Expect = 0.47
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ K + K KK K + QQ
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQ 848
Score = 31.7 bits (73), Expect = 0.56
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R K KK K +K K++
Sbjct: 822 RYLADAPAKDPAGKKAAVKFSRKTKQQYVA 851
Score = 31.3 bits (72), Expect = 0.74
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
+K K +K K++ +K K
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDGKA 858
Score = 30.5 bits (70), Expect = 1.2
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKK--KKKKKKTEIQ 35
+ + ++ + K KK K +KT+ Q
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQ 848
Score = 30.1 bits (69), Expect = 1.4
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
+ KK K +K K++
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYVASE 853
Score = 30.1 bits (69), Expect = 1.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
KK K +K K++ +K
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKDG 856
Score = 28.6 bits (65), Expect = 4.7
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKK 29
++ K +K K++ +K K
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDGKA 858
Score = 27.4 bits (62), Expect = 9.8
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKK 28
++ K +K K++ +K K
Sbjct: 835 KKAAVKFSRKTKQQYVASEKDGKA 858
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 33.3 bits (76), Expect = 0.15
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
R+ + K +K KKK K KKKKK + EL K + I
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSI 160
Score = 32.5 bits (74), Expect = 0.25
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ K KKK K KKKKK K I+
Sbjct: 120 PKTEKLKKKITVNKSTNKKKKKVLSSKDELIKY 152
Score = 31.3 bits (71), Expect = 0.69
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+ + + + +K KKK K KKKKK + ++
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNN 155
Score = 30.2 bits (68), Expect = 1.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
S RK K K +K KKK K KKKK
Sbjct: 113 SLMRKPKPKTEKLKKKITVNKSTNKKKK 140
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 31.9 bits (73), Expect = 0.16
Identities = 9/54 (16%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
+RK++++KK +++ K+K+++++ +++ I++ E ++ ++ +E + + +
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIRE-ERKQELEKQLKERKEALKLLE 80
Score = 28.4 bits (64), Expect = 2.2
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 20/60 (33%)
Query: 10 KKKKKKKKKKK-----------------KKKKKKKKKKKTEIQQME-LEKLQQRH--REE 49
KKKK KKK + K+K++++KK + E ++ E E++++R REE
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREE 60
Score = 27.3 bits (61), Expect = 5.3
Identities = 8/48 (16%), Positives = 32/48 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
RR+K +++ K+K+++++ +++K+ +++ + + + K ++ + +E
Sbjct: 34 RRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEE 81
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 31.9 bits (73), Expect = 0.19
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK----KKTEIQQMELEK 41
+ +E++ K+ KK++K+ K+ KK KK+EI+++ L+K
Sbjct: 96 KTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKK 140
Score = 29.2 bits (66), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME-LEKLQQRHREEIEAL 53
R KE ++ +K KK K ++K++ K+T +Q M+ K + E E L
Sbjct: 61 REKEIEELEKALKKTKDSEEKEELKRT-LQSMKSRLKTLKNKDREREIL 108
Score = 27.2 bits (61), Expect = 7.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
+++EK+ K+ KK KK + KK + + EL+K +Q +
Sbjct: 112 KKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDK 153
Score = 26.9 bits (60), Expect = 9.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 3 RSRRRKEKKKKK----KKKKKKKKKKKKKKKKKT 32
+S +K KKK KK K+ K +KK+KK
Sbjct: 130 KSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNA 163
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 32.7 bits (75), Expect = 0.19
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
M + R++ + KK ++ +K+++ KK ++Q EKLQ+R +E+ + L
Sbjct: 117 MQKVRKKLLAEAAAKKASEEARKQRELKKFGKQVQV---EKLQERAKEKKDML 166
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 32.4 bits (74), Expect = 0.21
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 3 RSRRRKEKK-----KKKKKKKKKKKKKKKKKKKK 31
R +K K +K K K KK KK
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
Score = 32.0 bits (73), Expect = 0.33
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
+K K K KK KK
Sbjct: 183 KAAKLSSTASSGDEKSPKSKAAPKKAGKK 211
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 2 IRSRRRKEKKK---KKKKKKKKKKKKKKKKKKKT 32
SRR K+ K +K K K KK
Sbjct: 176 GPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAG 209
Score = 29.3 bits (66), Expect = 2.1
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
RR +K K +K K K +
Sbjct: 178 SRRAKKAAKLSSTASSGDEKSPKSKAAPK 206
Score = 27.4 bits (61), Expect = 8.6
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKK 27
EK K K KK KK +K
Sbjct: 195 DEKSPKSKAAPKKAGKKMRK 214
Score = 27.4 bits (61), Expect = 9.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
+ S +K K K KK KK +K
Sbjct: 187 LSSTASSGDEKSPKSKAAPKKAGKKMRK 214
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.5 bits (74), Expect = 0.23
Identities = 14/51 (27%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL--QQRHREEIEA 52
S +R E+++KKK++++ ++ ++K+ ++ ++Q+E E+L Q++ ++ EA
Sbjct: 73 SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Score = 31.3 bits (71), Expect = 0.54
Identities = 13/48 (27%), Positives = 34/48 (70%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
R+++++K K+ ++++KKK++++ ++ + Q E E+L+Q +E + A
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAA 113
Score = 29.4 bits (66), Expect = 2.3
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++K+ ++++ K+ +K++ +++KK + + L+Q+ EE
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Score = 27.8 bits (62), Expect = 7.9
Identities = 11/37 (29%), Positives = 24/37 (64%)
Query: 17 KKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++K K+ ++++KKK + Q EL++ Q +E ++ L
Sbjct: 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQL 106
Score = 27.5 bits (61), Expect = 9.4
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K+ K+K+ ++ K K K E + ++ E +
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKK 170
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 32.8 bits (74), Expect = 0.23
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+ RR K KKK ++ ++ K+ KKK ++ Q+ L ++RH
Sbjct: 640 KMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRH 683
Score = 28.5 bits (63), Expect = 4.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME------------LEKLQQRHR 47
M R R+ ++ K K K +K +K +K+K+ I + E LE++ QRH+
Sbjct: 385 MFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEDLENEKSEEARALERMTQRHK 443
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.0 bits (73), Expect = 0.25
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
++ K+K+ +K KK KKK K+K ++ + E
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPES 85
Score = 30.5 bits (69), Expect = 0.66
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
I S ++ +KK+ +K KK KKK K+ ++ + + EE E
Sbjct: 45 IPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENEN 95
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 31.9 bits (73), Expect = 0.25
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+S +E+KKKKKKK KKKK KK
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 31.9 bits (73), Expect = 0.29
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+EKKKKKKK KKKK KK I
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
Score = 31.5 bits (72), Expect = 0.36
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ E++KKKKKKK KKKK KK
Sbjct: 172 KKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 31.1 bits (71), Expect = 0.48
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ +++KKKKKKK KKKK KK
Sbjct: 173 KKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 30.4 bits (69), Expect = 0.94
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ ++KKKKKK KKKK KK K
Sbjct: 175 SNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 30.0 bits (68), Expect = 1.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R +++ +++KKKKKKK KKKK KK
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKKLKKV 198
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ +++KKKKKKK KKKK KK
Sbjct: 173 KKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 29.2 bits (66), Expect = 2.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKT 32
++KKK +++KKKKKKK KKK
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKK 194
Score = 28.4 bits (64), Expect = 3.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++K +++KKKKKKK KKKK KK
Sbjct: 167 EAARDKKKSNNAEEEKKKKKKKSAKKKKLKK 197
Score = 28.0 bits (63), Expect = 4.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+K+KKKK KKKK KK K
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 27.3 bits (61), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
KKK +++KKKKKKK KK +++
Sbjct: 169 ARDKKKSNNAEEEKKKKKKKSAKKKKLK 196
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 32.4 bits (74), Expect = 0.25
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
KKKKKKKKK K+ + K I L + ++RH EE
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 29.3 bits (66), Expect = 2.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
KKKKKKKKK K+ + ++ +++ R E N G
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYG 55
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 31.1 bits (71), Expect = 0.26
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKK-------KKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
IR+ ++ K K+ K +KK K + ++++ + + E E+ +Q+H+++
Sbjct: 56 RIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKEEQEQKHQKQEREF 115
Score = 27.7 bits (62), Expect = 4.0
Identities = 14/54 (25%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME------LEKLQQRHREEI 50
+ R +E++KK+ K +K+++++K +K+++ + + E L++LQ R E+
Sbjct: 85 KLPRFQEQEKKRMKAEKEEQEQKHQKQEREFLAKQEENLEEALQQLQNEKRHEL 138
Score = 26.9 bits (60), Expect = 8.3
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+E +K + ++++KK+ K +K+++ + Q + + + E +E + +
Sbjct: 81 QEVEKLPRFQEQEKKRMKAEKEEQEQKHQKQEREFLAKQEENLEEALQQL 130
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.6 bits (74), Expect = 0.26
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
RK+KK++K K+K+ KK K +K+ K ++Q
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQA 49
Score = 30.6 bits (69), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
I + E+KKKK++K K+K+ KK K +K
Sbjct: 11 KILTEEELERKKKKEEKAKEKELKKLKAAQK 41
Score = 30.3 bits (68), Expect = 1.6
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R++K+++K K+K+ KK K +K+ K K + QQ
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
Score = 29.9 bits (67), Expect = 1.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+E ++KKKK++K K+K+ KK K + + +L+ Q
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQA 52
Score = 29.5 bits (66), Expect = 2.8
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE-KLQQR 45
+ ++ +++ ++KKKK++K K+K+ KK + Q E + KLQ +
Sbjct: 8 AEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 30.9 bits (70), Expect = 0.27
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
I + + E KKK++KKK K+ +K++K+ +
Sbjct: 37 ILAASKNEGVSKKKQRKKKPKRLTRKQRKRQK 68
Score = 29.8 bits (67), Expect = 0.63
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ +KK++KKK K+ +K++K++KK E
Sbjct: 41 SKNEGVSKKKQRKKKPKRLTRKQRKRQKKGLE 72
Score = 27.8 bits (62), Expect = 2.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 14 KKKKKKKKKKKKKKKKKKTEIQQMELEK 41
KKK++KKK K+ +K+ + Q+ LE+
Sbjct: 46 VSKKKQRKKKPKRLTRKQRKRQKKGLER 73
Score = 26.3 bits (58), Expect = 9.7
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K++KKK K+ +K++K++KK ++ EI L K
Sbjct: 50 KQRKKKPKRLTRKQRKRQKKGLERAEIVTDTLSK 83
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 31.1 bits (71), Expect = 0.27
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
+R + +K K+++ KKK++K K K KKK
Sbjct: 110 VRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 28.0 bits (63), Expect = 2.9
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R++ +K K+++ KKK++K K K KKK
Sbjct: 111 RKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.6 bits (62), Expect = 4.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
RK+ KK K+++ KKK++K K K K +
Sbjct: 111 RKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|188424 TIGR03909, pyrrolys_PylC, pyrrolysine biosynthesis protein PylC.
This protein is PylC, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 374
Score = 32.1 bits (73), Expect = 0.29
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVI-VHRQYDAATFENDIALLELETPIAYDSHI 162
AN+ F +DI+ E E +ISKNV +I + + F DIA L+ P+ +D
Sbjct: 37 ANMADEFICFDITEEPEKLVAISKNVDLIIPANENLEVLEFIKDIA-LKAGCPVLFDFDA 95
Query: 163 VPICMPK 169
I K
Sbjct: 96 YRISSSK 102
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 32.7 bits (75), Expect = 0.29
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
I +R + K K K K +K K KKK+KKK +
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKKKK 1183
Score = 31.2 bits (71), Expect = 0.78
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ ++++ K K K K K +K K KKK+ + ++ +K ++
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKK 1191
Score = 30.8 bits (70), Expect = 1.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
R+ + KKK+KKKKK K KK ++++ ++
Sbjct: 1166 ASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEK 1206
Score = 28.5 bits (64), Expect = 5.3
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ + ++ K KKK+KKKKK K KK ++ ++R ++
Sbjct: 1165 KASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Score = 28.5 bits (64), Expect = 6.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
S+ RK K KKK+KKKKK K KK
Sbjct: 1164 GKASKLRKPKLKKKEKKKKKSSADKSKKASV 1194
Score = 28.1 bits (63), Expect = 6.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQM---ELEKL-----QQRHREEIEAL 53
K +K + +KK+K+ +K K T + M +L+K +Q EE E
Sbjct: 1103 KVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIA 1153
Score = 27.7 bits (62), Expect = 8.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + ++++ K K K K K +K K KK E
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKE 1178
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 32.7 bits (75), Expect = 0.29
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT-EIQQMELEKLQQRH 46
+EKKK KK +K+ + + KK E+Q + + QRH
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEK---QRH 120
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 32.1 bits (73), Expect = 0.30
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+KE +++ +K K+ ++ K+ + + +Q E K +Q
Sbjct: 89 ARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQA 129
Score = 31.3 bits (71), Expect = 0.52
Identities = 10/49 (20%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKK----KKKTEIQQMELEKLQQRHREE 49
+R E+ ++K+ +++ +K K+ K+ E +Q + E+ + + E
Sbjct: 83 QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 31.3 bits (71), Expect = 0.56
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ E+K+K+ ++ K K+ + K K + E ++ E+ +++ EE
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Score = 30.6 bits (69), Expect = 0.99
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+++ E++ K K + KKK + KKK + + E + EE +A
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKA 196
Score = 29.8 bits (67), Expect = 1.7
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ-QRHREEIEA 52
+ ++ + K K + + +KK K++ KK+ E + + ++ E +
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173
Score = 29.4 bits (66), Expect = 2.5
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 5 RRRKEKKKKKKKKKKKKKK--------KKKKKKKKTEIQQMELEKLQQRHRE 48
++ E K K + + +KK K ++ K K E ++ E ++ E
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAE 178
Score = 28.3 bits (63), Expect = 5.7
Identities = 7/47 (14%), Positives = 29/47 (61%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+KE++++KK +++ ++ +K++ ++ +++E ++ ++ E
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQ 109
Score = 27.5 bits (61), Expect = 9.7
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K+ ++K+K+ ++ K K+ + K K E + + K + + + E EA
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 29.5 bits (67), Expect = 0.31
Identities = 11/51 (21%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 8 KEKKKKKKKKK-----KKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+++K+++++++ ++ +++KK + ++ E + +LE +R ++EIE L
Sbjct: 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERL 52
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 32.2 bits (74), Expect = 0.33
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKK----KKKKKTEIQQM----ELEKLQQRHREEIEALCRN 56
R R+E +K++K+ K+++ K + LEKL+ R EE
Sbjct: 245 RLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGK 304
Query: 57 IGIGCALPPPPPTVSRHTL 75
+ PPP + + L
Sbjct: 305 P-LAFRFPPPGKRLGKLVL 322
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 31.1 bits (71), Expect = 0.34
Identities = 13/46 (28%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQM--ELEKLQQRHREEIEA 52
+K+++K +K+ ++ +K K+ E+QQ EL++ QQ ++E++
Sbjct: 59 QKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQ 104
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 30.7 bits (70), Expect = 0.40
Identities = 15/49 (30%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+RR+ +KK +++KK +K+K+++ K+ K E++ EL+ ++ E++E
Sbjct: 61 KRRRAEKKAEEEKKLRKEKEEEIKELKAELE--ELKAEIEKLEEKLEEY 107
Score = 29.5 bits (67), Expect = 1.0
Identities = 13/41 (31%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQM--ELEKLQQRHRE 48
+ K+++ +KK +++KK +K+K+ EI+++ ELE+L+ +
Sbjct: 59 EAKRRRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEK 99
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 31.8 bits (73), Expect = 0.40
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K+ + ++ +++ +K++ K+ + + E++Q EK ++R E E L
Sbjct: 266 EKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEEL 312
Score = 31.8 bits (73), Expect = 0.43
Identities = 10/48 (20%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ K +++++++K+K+++++ + +Q+E E+ ++R E E L
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIE-EREKRRQEEYEERL 95
Score = 30.6 bits (70), Expect = 0.78
Identities = 9/58 (15%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 2 IRSRRRKEKKKKKKKKKKKKK-------KKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
R + +EKK+ K ++K++++ +++ K + E ++ + ++ ++ R ++
Sbjct: 21 ERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQE 78
Score = 30.3 bits (69), Expect = 1.2
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKK-----KKKKKKKKKTEIQQMELE--------KLQQRHR 47
I+ E ++K++K+KK ++ +++ ++K+ E ++ E + +
Sbjct: 107 RIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAERE 166
Query: 48 EEIEA 52
EE EA
Sbjct: 167 EEREA 171
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/46 (19%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+EK +++++++ +++++K++K+++ + + E+ + REE++ L
Sbjct: 160 REKAEREEEREAERRERKEEKEREVARLRAQQEEAEDE-REELDEL 204
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 5 RRRKEKKKKKKKKKKKKKKKK--KKKKKKTEIQQMELEK---LQQRHREEIEAL 53
KE++ ++++ +++ ++++ +K+ + E++Q EK + HR E+E
Sbjct: 243 IEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQ 296
Score = 27.6 bits (62), Expect = 9.0
Identities = 10/61 (16%), Positives = 35/61 (57%), Gaps = 11/61 (18%)
Query: 3 RSRRRKEKKKKKKKKKKK-----KKKKKKKKKKKTEIQQMELEKLQ------QRHREEIE 51
R R+ +++++K++K++ + ++++ + ++ E+ ++ + Q +R +E+ E
Sbjct: 165 REEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEE 224
Query: 52 A 52
A
Sbjct: 225 A 225
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 30.7 bits (70), Expect = 0.41
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 KKKKKKTEIQQMELEKLQQRHRE 48
+K+ KK E Q ELE+L+ R E
Sbjct: 101 RKEAKKEEELQQELEELEARVGE 123
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 30.7 bits (69), Expect = 0.41
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+ +KKKK+K +KK K KKK++K +I + E
Sbjct: 24 KSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPN 57
Score = 27.6 bits (61), Expect = 4.4
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 4 SRRRKEKKK----KKKKKKKKKKKKKKKKKKKTE 33
+++RKE K K KKKK+K +KK K KK E
Sbjct: 11 AKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKE 44
Score = 27.6 bits (61), Expect = 4.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 3 RSRRRKEKKKKKKKKKKKKKK---KKKKKKKKTE 33
+ R+ K + +K KKKK+K KK K KKK E
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEE 45
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 28.3 bits (64), Expect = 0.42
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++R R KK KKKKK K + K K
Sbjct: 8 EQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 26.0 bits (58), Expect = 3.4
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R + KK KKKKK K + K K E
Sbjct: 11 RERNAKKAAKKKKKGAKSQLKAAAKALE 38
Score = 24.9 bits (55), Expect = 8.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
M R +R++ +++ KK KKKKK K + K + +E
Sbjct: 1 MARGNQREQARERNAKKAAKKKKKGAKSQLKAAAKALE 38
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 28.4 bits (64), Expect = 0.42
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
R+K+ +K KKK KK K K I + E KL
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKPKYISKAERAKL 39
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 30.3 bits (69), Expect = 0.42
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
KE K KKKK+ + + K+ K E++ +E +L++ E++ L +I
Sbjct: 57 KEIGKAKKKKEDAEALIAEVKELKDELKALE-AELREL-EAELDKLLLSIP 105
>gnl|CDD|181784 PRK09334, PRK09334, 30S ribosomal protein S25e; Provisional.
Length = 86
Score = 29.6 bits (67), Expect = 0.45
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
++KKKKKK+ K +K+ E+L +R +E+
Sbjct: 1 QQKKKKKKEGSKTEKEIKSTIITLDEELLKRVAKEV 36
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 30.5 bits (69), Expect = 0.45
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 4 SRRRKEKKKKKK---KKKKKKKKKKKKKKKKT 32
S+ K+K+KK + + KK KK+++ +
Sbjct: 75 SQTHKKKRKKSRHVSSRSAKKISAKKRRRSSS 106
Score = 29.3 bits (66), Expect = 0.96
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ ++K KK + + KK KK+++ +
Sbjct: 76 QTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 27.8 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKK-----KKKKKKT 32
R+RKE++K + KKK+KK + KK
Sbjct: 65 QRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISA 98
Score = 27.8 bits (62), Expect = 3.7
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 3 RSRRRKEKKKKKKKKKKKK-------KKKKKKKKKKT 32
R R+ ++K + KKK+KK KK KK+
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRR 102
>gnl|CDD|224872 COG1961, PinR, Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair].
Length = 222
Score = 31.3 bits (71), Expect = 0.45
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKK---KKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+I R R + +K K+ + K KK +KK E Q + +L + R +
Sbjct: 128 LISERTRAGIEAARKAGKEGGRPPGYKIKKGRKKAEEQAAAVRRLLADGLGSYSEIARAL 187
Query: 58 GIGCALPPPPPTVSRHTLY 76
GI SR T+Y
Sbjct: 188 GI-----------SRSTVY 195
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.7 bits (72), Expect = 0.45
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK-LQQRHREEIE 51
E+ ++++K++KKKK KK K+ TE + + K + R+ +++
Sbjct: 59 EEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVT 102
>gnl|CDD|191968 pfam08213, DUF1713, Mitochondrial domain of unknown function
(DUF1713). This domain is found at the C terminal end
of mitochondrial proteins of unknown function.
Length = 34
Score = 28.1 bits (63), Expect = 0.48
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+R RRRK KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 26.5 bits (59), Expect = 1.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
S RK ++K KK K KK +K+ + ++K
Sbjct: 4 SVLRKRRRKMKKHKYKKLRKRTRALRRK 31
Score = 26.5 bits (59), Expect = 1.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R++ +K KK K KK +K+ + ++K
Sbjct: 2 ADSVLRKRRRKMKKHKYKKLRKRTRALRRK 31
Score = 25.0 bits (55), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +RR++ KK K KK +K+ + ++K K
Sbjct: 5 VLRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 25.0 bits (55), Expect = 6.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+K+++K KK K KK +K+T + +L+K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 25.0 bits (55), Expect = 7.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTE 33
+K+++K KK K KK +K+ +
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRAL 28
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 0.49
Identities = 7/33 (21%), Positives = 30/33 (90%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + +++++K++++++K++KK+++++++K+K E
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAE 221
Score = 30.9 bits (70), Expect = 0.77
Identities = 9/28 (32%), Positives = 24/28 (85%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
E KK K++++K++++++K++KK+ E ++
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 28.9 bits (65), Expect = 2.5
Identities = 9/43 (20%), Positives = 34/43 (79%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+++++++++++K++KK+++++++K+K E Q ++ ++QR
Sbjct: 192 LKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQR 234
Score = 28.9 bits (65), Expect = 3.2
Identities = 5/34 (14%), Positives = 29/34 (85%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ +++++K++++++K++KK+++++++K + ++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 28.5 bits (64), Expect = 3.6
Identities = 9/39 (23%), Positives = 30/39 (76%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+K K++++K++++++K++KK+++ E ++ + E+ Q+
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 28.5 bits (64), Expect = 3.7
Identities = 10/38 (26%), Positives = 28/38 (73%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
K+ K++++K++++++K++KK++++ E +Q E Q
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQ 225
Score = 28.2 bits (63), Expect = 4.8
Identities = 6/39 (15%), Positives = 30/39 (76%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
++ K++++K++++++K++KK+++++++ + + +K
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 27.8 bits (62), Expect = 6.7
Identities = 10/41 (24%), Positives = 30/41 (73%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+++ ++ + KK K++++K++++++K+ + QQ E E+ Q+
Sbjct: 179 EAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 27.4 bits (61), Expect = 7.7
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE-IEALCRN 56
S ++ +++KK +K ++K+K++++K + E +L+QR +E E CR
Sbjct: 94 SAKQAQRQKKLQKLLEEKQKQEREK-------EREEAELRQRLAKEKYEEWCRQ 140
Score = 27.4 bits (61), Expect = 8.2
Identities = 9/43 (20%), Positives = 29/43 (67%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
+E+ KK+ ++ + KK K++++K++ E ++ ++ ++ R++
Sbjct: 177 QEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 31.3 bits (71), Expect = 0.53
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ R E+K+K+ K++++KK+ +++KKKK E
Sbjct: 273 SLVKFLRTERKEKEAKEQQEKKELEQRKKKKKE 305
Score = 29.4 bits (66), Expect = 2.2
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
++ RRK KK + K + ++K+K+ +Q E ++L+QR +++ E
Sbjct: 257 LKPTRRKLPPSTKKWESLVKFLRTERKEKE-AKEQQEKKELEQRKKKKKE 305
Score = 28.2 bits (63), Expect = 5.3
Identities = 9/36 (25%), Positives = 24/36 (66%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R ++++EKK ++ K +++ K +KK+++ E ++
Sbjct: 12 TKREKKKREKKSIRQSKLEEELNKLEKKEEEAECKK 47
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 31.0 bits (70), Expect = 0.54
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R E+ +K+ ++ + +K +K ++ E ++ ELE+L++ E +E L
Sbjct: 158 RLEELEKELEELEDEKDLLEKLLEEKEKKK-ELEELKEELEELLEEL 203
Score = 30.6 bits (69), Expect = 0.73
Identities = 10/50 (20%), Positives = 28/50 (56%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ R + +K+ ++ + +K +K ++K+ + + EL++ + EE+E
Sbjct: 155 KKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 29.3 bits (66), Expect = 0.58
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
+K+KKK K + KK +K+ K KK
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 28.2 bits (63), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K++KKK K + KK +K+ K KK
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 27.4 bits (61), Expect = 3.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKK 28
+++K+K K + KK +K+ K KK
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 25.8 bits (57), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
E++ KK+KKK K + KK +K+ +++
Sbjct: 25 EEELKKQKKKNKLRFLKKLEKRPKDVK 51
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.2 bits (71), Expect = 0.63
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
K++ K + KKK +KKKKKKK+KK + E + + ++
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 31.2 bits (71), Expect = 0.66
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K+K +KKKKKKK+KK+ K + + K + + K
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 29.7 bits (67), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
S ++K+KKK+KK+ K + + K K K
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Score = 29.7 bits (67), Expect = 2.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+++KEKK+ K + + K K KK KKT+ + + + +
Sbjct: 74 KKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDV 115
Score = 29.3 bits (66), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+K+ +KKKKKKK+KK+ K + + K
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 28.9 bits (65), Expect = 3.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ +++K++KK+ K + + K K KK K
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 30.8 bits (70), Expect = 0.64
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
R E +KKK + KKK K KK + ++
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRIDL 175
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
R+ EKKK + KKK K KK +
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 30.3 bits (69), Expect = 0.64
Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+++ E+ ++ K + +++ ++ K+ + EI+ E E+ + R E+ L I
Sbjct: 81 AKKEAEQIAEEIKAEAEEELERIKEAAEAEIEA-EKERALEELRAEVAELAVAI 133
Score = 28.4 bits (64), Expect = 3.0
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
I + +KE ++ ++ K + +++ ++ K+ E ++E EK +R EE+ A
Sbjct: 77 IIEQAKKEAEQIAEEIKAEAEEELERIKEAAE-AEIEAEK--ERALEELRA 124
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 31.2 bits (71), Expect = 0.64
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
R+E K K+ KK K KK + KK+K + + E E+L
Sbjct: 215 REEAKAKRIKKIKSKKYHRVHKKEKLKEELKEFEELV 251
Score = 30.0 bits (68), Expect = 1.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R ++RK K++ K + KK+K+K KK K
Sbjct: 629 RKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 29.6 bits (67), Expect = 2.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R+K++K+K++ K + KK+K+K K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDK 654
Score = 28.9 bits (65), Expect = 4.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
I+ R++K K+K++ K + KK+K+K KK
Sbjct: 626 IKKRKKKRKRKRRFLTKIEGVKKEKRKDKK 655
Score = 27.7 bits (62), Expect = 9.2
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ K K K KKKKKK+K + E + ++ +E
Sbjct: 522 KAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDE 564
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 30.4 bits (69), Expect = 0.67
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKK 30
E KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEI 34
KK K K+ +K + KKKKKK I
Sbjct: 86 SKKAKGKRSRKNQTKKKKKKDDNPI 110
Score = 28.8 bits (65), Expect = 2.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKK 31
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKK 27
+K K K+ +K + KKKKKK
Sbjct: 86 SKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 30.6 bits (69), Expect = 0.67
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE-----IEALCRNIGIGC 61
+E K+KKKKK KKKK K +++ + + + E IE +++G
Sbjct: 86 NQENKQKKKKKDKKKKSPKSLLLNFVTVEESKPDDEVHEQKSETLSLPIELEEQSMGRYL 145
Query: 62 AL--PPPPPTVSRH 73
P P ++RH
Sbjct: 146 PTTFKPGSPDLARH 159
Score = 28.7 bits (64), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 11/42 (26%)
Query: 1 MIRSRRRKEKKKKKKKKKKK-----------KKKKKKKKKKK 31
++R R+ E+KK + KK+ K+KKKKK KKK
Sbjct: 59 LVRYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKK 100
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 28.6 bits (64), Expect = 0.67
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ ++ KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 27.0 bits (60), Expect = 2.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ +K KKK ++KKKK KKK+K K
Sbjct: 4 KPKKIAKKKPGTEQKKKKSAKKKRKPKL 31
Score = 25.9 bits (57), Expect = 6.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+++ K+ KKK ++KKKK KKK+K
Sbjct: 2 AKKPKKIAKKKPGTEQKKKKSAKKKRKP 29
Score = 25.5 bits (56), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ ++KKKK KKK+K K K T
Sbjct: 10 KKKPGTEQKKKKSAKKKRKPKLPKNFNPVVT 40
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 29.2 bits (66), Expect = 0.70
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
M +++RKE+ ++K K K ++KK
Sbjct: 57 MKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.1 bits (68), Expect = 0.72
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+E + K + K+KKK++ K K + +
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 28.2 bits (63), Expect = 3.2
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
E++ + K + K+KKK++ K ++ +
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 27.8 bits (62), Expect = 4.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+++ + K + K+KKK++ K KTE ++ + E + +
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 27.4 bits (61), Expect = 5.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+E + +++ + K + K+KKK E+ + + EK + +
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 31.2 bits (70), Expect = 0.72
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R+R KE +K + K +KK+ ++ ++ E +++E E++++ RE +E
Sbjct: 437 RARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLE 485
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 28.4 bits (64), Expect = 0.73
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+ R EK +K+K+KK +K+K K+ + E Q
Sbjct: 33 KEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQ 65
Score = 26.9 bits (60), Expect = 2.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+R + +E +K +K+K+KK +K+K K ++ + E
Sbjct: 29 LREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding
of TATA binding protein. TMFs are evolutionarily
conserved golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 28.8 bits (65), Expect = 0.74
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
KK + K K+ +K+ + KKK E + ELE L++R +
Sbjct: 36 KKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKR 72
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 31.1 bits (70), Expect = 0.74
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ + K+K K+K K+ K + + + E ++QR + I+A
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDA 837
Score = 28.8 bits (64), Expect = 4.1
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 2 IRSRRRKEKKKKKK----KKKKKKKKKKKKKKKKTEIQQME 38
I++ R ++K K+K K+ K + + + ++ I+Q E
Sbjct: 791 IKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQRE 831
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.1 bits (71), Expect = 0.75
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 2 IRSRRRKEKKK-KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIG 60
+R +E K+ + +K+ + +KK +KK K I++ + E+ E+EA
Sbjct: 70 LREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEA-------- 121
Query: 61 CALPPPPP 68
P PP
Sbjct: 122 -EEPEPPL 128
Score = 28.4 bits (64), Expect = 5.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
EK+ + +KK +KK KK KK + + + E L+ E L +
Sbjct: 82 EAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPLRPRL 132
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 30.6 bits (69), Expect = 0.76
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ K K KK KKK + K + + +
Sbjct: 153 GQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDW 191
Score = 30.6 bits (69), Expect = 0.88
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 8 KEKKKKKKKK--KKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIG----- 60
KE KK KK + K K K KK KKK + ++ R + + +++ I
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQDLVINGVSMD 204
Query: 61 -CALPPP 66
+P P
Sbjct: 205 ISGMPVP 211
Score = 29.1 bits (65), Expect = 3.1
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ + K K K KK KKK + K I
Sbjct: 152 KGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDP 185
Score = 28.7 bits (64), Expect = 3.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKK 30
++ K+ KK + K K K KK KKK
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKK 170
Score = 28.7 bits (64), Expect = 3.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K K K KK KKK +
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSV 178
Score = 28.3 bits (63), Expect = 4.5
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
++ K+ + K K K KK KKK +M + +
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 29.8 bits (68), Expect = 0.80
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K KKKKKKKKK+ + ++KKKK ++ E +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQK 115
Score = 29.4 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+++KKKKKKKK+ + ++KKKK +E E ++ Q
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSE----ERKEDQ 114
Score = 28.3 bits (64), Expect = 2.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+RK+KKKKKKK+ + ++KKKK E
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEE 109
Score = 27.9 bits (63), Expect = 4.1
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 5 RRRKEKKKKKKKKK--KKKKKKKKKKKKKTEIQ 35
+R+K+KKKKKK+ + ++KKKK +++ E Q
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQ 114
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 30.4 bits (69), Expect = 0.82
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
+ +R K + + KK +KK +K K E LE+L + + E+EA
Sbjct: 122 KQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQK-ELEAFVSQ 174
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 31.0 bits (71), Expect = 0.82
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R+ E KK++ +KK+K+ K+K + ++ ELE+L REE+E
Sbjct: 94 RKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Score = 28.4 bits (64), Expect = 5.2
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 3 RSRRRKEKKKKKKKKKK-----KKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+ RR + ++ +++ ++ +K + KK++ E ++ EL ++ E+ E L I
Sbjct: 72 KERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 30.5 bits (69), Expect = 0.89
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
R+ K K KK+KKK+ K+KKK
Sbjct: 189 RQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 28.1 bits (63), Expect = 4.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKK 26
+R + K KK+KKK+ K+KKK
Sbjct: 188 LRQAKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 30.4 bits (69), Expect = 0.92
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ RR K KK KK K KK KK
Sbjct: 251 LLAERRAKGGPGKKPAKKATAAKAKKTTAKKA 282
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 28.7 bits (65), Expect = 0.92
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
R E++ +K ++ ++++ K KK++ + E +LQ
Sbjct: 25 RYERRDRKVQQLEEEEALKLLKKRRKVDLEEEYYRLQG 62
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 28.8 bits (65), Expect = 0.93
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K+KK KK KK +KKKK KKK
Sbjct: 30 KKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+KKK KK KK +KKKK KK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKK 52
Score = 27.2 bits (61), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKK 29
+K+ KK KK +KKKK KKK
Sbjct: 31 KKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 29.9 bits (68), Expect = 0.94
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK 26
+++R+EKK++ K +K++ K KK
Sbjct: 141 FAKKRREKKERVAKNEKRELKNKK 164
Score = 27.6 bits (62), Expect = 5.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKK 30
+K+++KK++ K +K++ K KK
Sbjct: 141 FAKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 30.6 bits (69), Expect = 0.95
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
R+R + E++++++K++ K K ++++K K+ +Q E + QR R
Sbjct: 7 RAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSR 51
Score = 30.2 bits (68), Expect = 1.3
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
+R R K +++++++K++ K K ++++K K E + RE IEA R
Sbjct: 5 LRRAREKLEREQRERKQRAKLKLERERKAKEE---------AAKQREAIEAAQR 49
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.8 bits (70), Expect = 0.97
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKK 27
IR +E K KKKK+KKK+ +K
Sbjct: 415 IREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 28.5 bits (64), Expect = 4.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
R+E ++ K KKKK+KKK+ +K
Sbjct: 416 REELIEEGLLKSKKKKRKKKEWFEK 440
Score = 28.1 bits (63), Expect = 6.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKK 29
R ++ K KKKK+KKK+ +K
Sbjct: 416 REELIEEGLLKSKKKKRKKKEWFEK 440
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.0 bits (70), Expect = 0.98
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R KK ++ KK KK KK ++E
Sbjct: 1187 ARGESGAAKKVSRQAPKKPAPKKTTKKASESE 1218
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
R+ R E KK ++ KK KK K + E
Sbjct: 1183 QRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Score = 28.7 bits (64), Expect = 4.2
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
R + KK ++ KK KK KK + E
Sbjct: 1188 RGESGAAKKVSRQAPKKPAPKKTTKKASESETTEE 1222
Score = 28.3 bits (63), Expect = 6.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
R K ++ + + KK ++ KK
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKK 1204
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 29.6 bits (67), Expect = 0.98
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKK---------KKKKTEIQQMELEKLQQRHREEIEA 52
+ +++KK+K+KKKKKKK+ + KKK+ +Q +L K + +E +E
Sbjct: 67 GEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKE---EQADLLKKFEEDKERVEK 123
Query: 53 L 53
+
Sbjct: 124 M 124
Score = 28.0 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K +++KK+K+KKKKKKK+ +
Sbjct: 64 PAAGEEAGKAAEEEKKEKEKKKKKKKELE 92
Score = 26.9 bits (60), Expect = 7.7
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE----IQQMELEKLQQ 44
+ E+ K +++KK+K+KKKKKKK+ E Q E +K +Q
Sbjct: 62 KGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQ 107
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 30.7 bits (69), Expect = 0.99
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 6 RRKEKKKKKKKKKKKKK---KKKKKKKKKTEIQQMELEKLQQRHREEI 50
K KKKKKK K KKK KK K+ + + + + REE
Sbjct: 238 EEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREED 285
Score = 27.6 bits (61), Expect = 8.4
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
KK KK KK K KK K
Sbjct: 333 GLSKKGKKLKKLKGKKNGLDKDDSDS 358
Score = 27.6 bits (61), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
+E KK KK KK K KK K +
Sbjct: 330 EEGGLSKKGKKLKKLKGKKNGLDKDD 355
Score = 27.6 bits (61), Expect = 10.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+EK +++ KK KK KK K KK + + +
Sbjct: 323 SEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 30.3 bits (69), Expect = 1.0
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K KKKK KK +KK KKKK EI ++ ++ Q
Sbjct: 51 SAKAKKKKSKKSEKKSSSKKKKKEISVLDPKRSQN 85
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 1.0
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
+E+K+KKK K++KK K++K+K E
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLE 120
Score = 29.9 bits (68), Expect = 1.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+EK+KKK K++KK K++K+K E
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
KEKKK K++KK K++K+K ++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
Score = 28.8 bits (65), Expect = 3.2
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+++K+KKK K++KK K++K ++++
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEE 121
Score = 27.6 bits (62), Expect = 6.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+++KK K++KK K++K+K ++
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 30.7 bits (69), Expect = 1.1
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
++R K KK KKKK KKK+ K + E QQME
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPE-QQME 149
Score = 30.7 bits (69), Expect = 1.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ R E K KK KKKK KKK+ K + +Q EK
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 29.7 bits (67), Expect = 1.1
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+ KE +++KK +K K+K +++ Q+
Sbjct: 45 EETELDKELFTPEEQKKITFQKHKEKPEQEELKNQL 80
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.5 bits (69), Expect = 1.1
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ---QRHREEIEAL 53
++ ++ K + +++KK + + Q +LE+L+ R + EI +
Sbjct: 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASA 243
Score = 29.7 bits (67), Expect = 2.0
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK---------KKKKKTEIQQMELEKLQQRHREEI 50
S +R ++ K + +++KK + KK ++ + L+
Sbjct: 191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247
>gnl|CDD|206557 pfam14389, Lzipper-MIP1, Leucine-zipper of ternary complex factor
MIP1. This leucine-zipper is towards the N-terminus of
MIP1 proteins. These proteins, here largely from
plants, are subunits of the TORC2 (rictor-mTOR) protein
complex controlling cell growth and proliferation. The
leucine-zipper is likely to be the region that
interacts with plant MADS-box factors,.
Length = 88
Score = 28.7 bits (65), Expect = 1.1
Identities = 10/30 (33%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 22 KKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
KKKK +++++ ++Q E+ KLQ++ ++E +
Sbjct: 1 KKKKASQERRSALEQ-EVAKLQKQLQQEED 29
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 30.5 bits (69), Expect = 1.2
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+E +KK+K++ + K+K++K ++K
Sbjct: 410 EENEKKQKEQADEDKEKRQKDERK 433
Score = 29.4 bits (66), Expect = 2.4
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKK 30
EKK+K++ + K+K++K ++KK
Sbjct: 412 NEKKQKEQADEDKEKRQKDERKK 434
Score = 28.2 bits (63), Expect = 5.7
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+ +KK+K++ + K+K++K ++KK
Sbjct: 411 ENEKKQKEQADEDKEKRQKDERKK 434
Score = 27.8 bits (62), Expect = 7.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K K+++ +KK+K++ + K+K++K E
Sbjct: 406 KLKQEENEKKQKEQADEDKEKRQKDE 431
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTE 33
+K++ KKKKK+KK KK + +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 30.2 bits (69), Expect = 1.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKT 32
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 29.8 bits (68), Expect = 1.9
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 9 EKKKKKKKKKKKKKKKKKKKK 29
EK++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 5.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 8 KEKKKKKKKKKKKKKKKKKKK 28
++++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 8.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEI 34
+K++ KKKKK+KK KK + +I
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor. The ribosome recycling
factor (RRF / ribosome release factor) dissociates the
ribosome from the mRNA after termination of translation,
and is essential bacterial growth. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis.
Length = 165
Score = 29.8 bits (68), Expect = 1.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
IR+ RR K KK +K K+ + + K+ + EIQ++
Sbjct: 110 IRNIRRDANDKLKKLEKDKEISEDEVKRAEKEIQKL 145
>gnl|CDD|217779 pfam03885, DUF327, Protein of unknown function (DUF327). The
proteins in this family are around 140-170 residues in
length. The proteins contain many conserved residues.
with the most conserved motifs found in the central and
C-terminal region. The function of these proteins is
unknown.
Length = 146
Score = 29.5 bits (67), Expect = 1.2
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
KK + K KK KKK+ + + + +E E +++ E ++ L I
Sbjct: 4 NKKSRLGLKTKKSSKKKESGESSSFSEVLE-EIRKKKSEERLKELLDEI 51
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 30.3 bits (69), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
++ + K +K K ++K +K KKK K + +L L++R E
Sbjct: 247 LQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDE 293
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 29.7 bits (67), Expect = 1.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 2 IRSRRRKEKKKKKK----KKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
I+ RR+K K + ++K KK +KKKK K + EL++ +++
Sbjct: 96 IKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 30.2 bits (68), Expect = 1.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 8 KEKKKKKKK------KKKKKKKKKKKKKKKTEIQQM 37
KE KKK K + K++K++K+KK KK ++ +
Sbjct: 128 KEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 28.2 bits (63), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKK 23
+ RS+RRK +K+KK KK+
Sbjct: 141 LDRSKRRKRRKRKKNKKQDLPVL 163
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 28.7 bits (65), Expect = 1.3
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 5/31 (16%)
Query: 7 RKEKKKKKKKKKK-----KKKKKKKKKKKKT 32
++EKKKKKKK + KK+KK+ +++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
Score = 27.2 bits (61), Expect = 5.0
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Query: 10 KKKKKKKKKKKKK---KKKKKKKKKTE 33
K++KKKKKKK + +KK+KK+ +E
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSE 64
Score = 26.4 bits (59), Expect = 9.0
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 3 RSRRRKEKKKK----KKKKKKKKKKKKKKKKKKT 32
R +++K+KK + +KK+KK+ +++K +K
Sbjct: 39 REKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 30.0 bits (67), Expect = 1.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMEL 39
RR K K +K+KK +KK K+ ++K + + +M++
Sbjct: 220 RREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDV 254
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 29.0 bits (65), Expect = 1.3
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQ-QMELEKLQQRHREEIE 51
+K +++ + K+K++ + ++K E Q + E E+L++ RE E
Sbjct: 21 QKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFE 64
Score = 27.1 bits (60), Expect = 7.6
Identities = 17/55 (30%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEI----QQMELEKLQQRHREEIEALCRNI 57
+EK+++++ +K+K++ +++++K+ E+ Q+ME EKLQ+ E AL I
Sbjct: 46 EQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHEHNLALANFI 100
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 30.0 bits (68), Expect = 1.4
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
R + EK+++K+++ +KK ++ + KK E E+EK Q ++ E
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIE---KEVEKRQAKYSE 194
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.1 bits (68), Expect = 1.4
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ E+ +++ ++ +++ ++ KK + E ELE + E + L
Sbjct: 683 LEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKEL 735
>gnl|CDD|129141 TIGR00030, S21p, ribosomal protein S21. This model describes
bacterial ribosomal protein S21 and most mitochondrial
and chloroplast equivalents [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 58
Score = 27.6 bits (62), Expect = 1.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
++ RR EK +++++K+K K+ +KK
Sbjct: 31 LKKRRYYEKPSERRRRKEKAAAKRIRKK 58
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two
proteins encoded by the ATP11 and ATP12 genes. Atp11p
is a molecular chaperone of the mitochondrial matrix
that participates in the biogenesis pathway to form F1,
the catalytic unit of the ATP synthase.
Length = 250
Score = 29.6 bits (67), Expect = 1.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
K K K K KKK K K + I +++EK++ EEIE + R
Sbjct: 49 ASKFKTLKPPKPADKKKPFDKPFKPLSSI--LDVEKIKDLSAEEIEFIWR 96
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 30.1 bits (68), Expect = 1.5
Identities = 9/49 (18%), Positives = 29/49 (59%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R +++E+ + +K + + ++++K +++ELE+L+++ E+
Sbjct: 85 RLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELY 133
Score = 28.1 bits (63), Expect = 5.4
Identities = 8/52 (15%), Positives = 29/52 (55%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
+RR +E+ ++++++ +K+++ + +K + + +LE+ ++ L
Sbjct: 71 EARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELE 122
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.9 bits (67), Expect = 1.6
Identities = 16/54 (29%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL----QQRHREEIEAL 53
S ++ E+++KKK+++ ++ K K+ ++ ++Q+E E+L QQ+ EE E
Sbjct: 73 SAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQ 126
Score = 28.0 bits (62), Expect = 6.4
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R + ++ KK ++++KKK+++ ++ Q E E+L+Q +E ++A
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQ 114
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 29.6 bits (67), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 1 MIRSRRRKEKKKKKKKKKK----KKKKKKKKKKKK 31
I+ +K KKKKKK+KK KK K K + K
Sbjct: 152 QIKKLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPK 186
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 29.2 bits (66), Expect = 1.6
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
SR R++ K+ K + KKK + + +Q +
Sbjct: 99 SRCREDFLKRVAANDAIKAEAKKKGELPSTKRQPAQPR 136
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 28.2 bits (63), Expect = 1.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
K KK KKKK K KK K KK Q+
Sbjct: 37 KPKKAAAKKKKPAVKGKKGAKGKKETKQE 65
Score = 27.1 bits (60), Expect = 4.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+K KKKK K KK K KK+ K E
Sbjct: 39 KKAAAKKKKPAVKGKKGAKGKKETKQE 65
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 29.9 bits (67), Expect = 1.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
S +R KKKK KK K +K+ K+K KK K+ E
Sbjct: 66 VSGKRVPKKKKIKKPKLRKRTKRKNKKIKSLTAFNE 101
Score = 28.4 bits (63), Expect = 5.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R K+KK KK K +K+ K+K KK K T + E +
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKIKSLTAFNEENFETDRAP 110
Score = 27.6 bits (61), Expect = 8.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
K+ KKKK KK K +K+T+ + +++ L + E E
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKIKSLTAFNEENFE 105
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
E K K K K K K KK +++ K E++ +E
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKPVE 125
Score = 29.3 bits (66), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K K K K K KK +++ K++ K E
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVE 125
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 28.0 bits (63), Expect = 1.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R + R+ + KK+KK +K K+ K +++ +
Sbjct: 23 RKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREED 56
Score = 27.6 bits (62), Expect = 1.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
R+RK+ ++ + KK+KK +K K+ K
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLK 46
Score = 26.1 bits (58), Expect = 6.1
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
R R++ + + KK+KK +K K+ K ++ ++
Sbjct: 20 TRKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVR 53
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.4 bits (66), Expect = 1.6
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K+ +++ + KK+ K+ K++ + +Q +E L++
Sbjct: 10 KDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEK 46
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 29.1 bits (66), Expect = 1.7
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 6 RRKEKKKKKKKKKKKKKKKKK--------------KKKKKTEIQQMELEKLQQ----RHR 47
R + K +KKK ++ +K+ K+ +K E++ L + R
Sbjct: 24 NRATLRDDKLEKKKAERAEKRSLELDRLFFFQEQIKEDEKEPFTLEEIKDLIERYLHRFD 83
Query: 48 EEIEAL 53
EE+E L
Sbjct: 84 EELEQL 89
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.1 bits (67), Expect = 1.7
Identities = 12/41 (29%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
K++ K +++K++ + ++ K+ EI + E E+ +QR R+ I
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKER-EQRIRKTIH 1062
Score = 27.8 bits (61), Expect = 8.4
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
M +R KE++ KK+K+++++ +K E+ + L+K +
Sbjct: 1035 MESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 30.1 bits (68), Expect = 1.7
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+E + K+ KKKKKKKKKKKKK E
Sbjct: 48 QEAENKQNNKKKKKKKKKKKKKNLGEA 74
Score = 28.1 bits (63), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ K++K++ K+K KKK KK KK + L +L
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELIS 45
Score = 27.4 bits (61), Expect = 9.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ ++ + K+ KKKKKKKKKKKKK + +L
Sbjct: 46 ENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAY 79
Score = 27.4 bits (61), Expect = 9.9
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPPP 66
++ KKKKKKKKKKKKK + + + ++ R +G
Sbjct: 51 ENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHI--RKLGNWPEQEWK 108
Query: 67 ---PPTVSRHTLY 76
PPT+ +
Sbjct: 109 QTQPPTIPVSKQF 121
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.8 bits (68), Expect = 1.8
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK-LQQRHREEIEAL 53
+ ++K+KKK+KKK KKKK ++ + ++ K L++ R+++E L
Sbjct: 390 AQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELL 436
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 29.2 bits (66), Expect = 1.8
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE--------KLQQRHREEIEALCRNIG 58
+K+ ++ K KK ++ +++ +K Q E E Q+R E +E L N+
Sbjct: 110 KKKLQELWAKLAKKADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLK 169
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/32 (28%), Positives = 25/32 (78%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
R ++++KK++++K+K++ +K +++ +IQQ
Sbjct: 72 ERMDERRKKRREQKEKEEIEKYREENPKIQQQ 103
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R E++KK++++K+K++ +K +++ QQ
Sbjct: 72 ERMDERRKKRREQKEKEEIEKYREENPKIQQQ 103
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 29.6 bits (67), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKK 28
R K+K++ KK+KKKK KK K
Sbjct: 349 RPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.9 bits (65), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 13 KKKKKKKKKKKKKKKKKKKT 32
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 28.9 bits (65), Expect = 3.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 12 KKKKKKKKKKKKKKKKKKKKT 32
K+K++ KK+KKKK KK K T
Sbjct: 356 KRKREGDKKQKKKKSKKLKLT 376
Score = 28.5 bits (64), Expect = 4.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 11 KKKKKKKKKKKKKKKKKKK 29
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 29.7 bits (67), Expect = 1.9
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKK 28
R++R + + K +K+KK+ K+
Sbjct: 427 RTKRPEPRAAADTKSAAEKQKKRAKE 452
Score = 27.8 bits (62), Expect = 8.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
R +R E + K +K+KK+ K+
Sbjct: 425 FRRTKRPEPRAAADTKSAAEKQKKRAKE 452
Score = 27.8 bits (62), Expect = 8.8
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCA 62
+ RR K + + K +K+KK+ K+ EEI+
Sbjct: 424 KFRRTKRPEPRAAADTKSAAEKQKKRAKEPFEIDFGAPL------EEIDF--------EV 469
Query: 63 LPPPPPTVSRHTLYTLQ 79
+ PP S + LQ
Sbjct: 470 IFQPPKANSTLSKSKLQ 486
>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein.
Length = 193
Score = 29.0 bits (66), Expect = 1.9
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 1 MIRSRR--RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
++ + K ++ + + K+ ++K K +K Q E+ KL + H
Sbjct: 22 TLKQYKSMAKMQELQPEIKEIQEKYKDDPQK-----LQQEMMKLYKEH 64
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum
complementation group G (XPG) nuclease, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. The Xeroderma pigmentosum
complementation group G (XPG) nuclease plays a central
role in nucleotide excision repair (NER) in cleaving DNA
bubble structures or loops. XPG is a member of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain). In XPG PIN domains, this arch region can be
quite variable and extensive (400 - 800 residues) in
length and is required for NER activity and for
efficient processing of bubble substrates. Inserted
within the PIN domain of these 5' nucleases is a H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+).
Length = 249
Score = 29.5 bits (67), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 1 MIRSRRRKEKKKKKKKKKKKK--KKKKKKKKKKTEIQQ---MELEKLQQRHREEIEALCR 55
+ + R+++EK + KK +K + KK K++ QQ E Q+ + E + L R
Sbjct: 88 LAKRRQQREKAEINAKKTAEKLLASQLKKSAVKSQQQQQERDADEITQEMYD-ECQELLR 146
Query: 56 NIGI 59
GI
Sbjct: 147 LFGI 150
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic
acid-binding [General function prediction only].
Length = 239
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R R ++ +K KK K + + K + EI+ +LE + EI+ +
Sbjct: 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 28.6 bits (64), Expect = 2.0
Identities = 10/38 (26%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
K+K+ + K++K++++ K+ ++E+++ EL K Q+ +
Sbjct: 59 KRKRDQVLKEQKEEEEAKRLQSELER-ELMKRAQKLEQ 95
>gnl|CDD|220653 pfam10252, PP28, Casein kinase substrate phosphoprotein PP28.
This domain is a region of 70 residues conserved in
proteins from plants to humans and contains a
serine/arginine rich motif. In rats the full protein is
a casein kinase substrate, and this region contains
phosphorylation sites for both cAMP-dependent protein
kinase and casein kinase II.
Length = 82
Score = 27.7 bits (62), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 KKKKKKKKTEIQQMELEKLQQRHREEIEA 52
KKK+ +K EI + +L +R REEIE
Sbjct: 7 KKKRSQKAKEIDLDDPVELSRREREEIEK 35
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 29.0 bits (66), Expect = 2.1
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R+ E +KK++ ++K+K+ ++++ E ++ ELE+L + ++E+E
Sbjct: 96 RKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELE 141
>gnl|CDD|239353 cd03055, GST_N_Omega, GST_N family, Class Omega subfamily; GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Omega GSTs show little or no
GSH-conjugating activity towards standard GST
substrates. Instead, they catalyze the GSH dependent
reduction of protein disulfides, dehydroascorbate and
monomethylarsonate, activities which are more
characteristic of glutaredoxins. They contain a
conserved cysteine equivalent to the first cysteine in
the CXXC motif of glutaredoxins, which is a redox
active residue capable of reducing GSH mixed disulfides
in a monothiol mechanism. Polymorphisms of the class
Omega GST genes may be associated with the development
of some types of cancer and the age-at-onset of both
Alzheimer's and Parkinson's diseases.
Length = 89
Score = 27.7 bits (62), Expect = 2.1
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 55 RNIGIGCALPPPPPTVSRHTLYTLQF 80
+++ G A PPP P + R LY+++F
Sbjct: 3 KHLAKGSAEPPPVPGIIR--LYSMRF 26
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 29.7 bits (67), Expect = 2.1
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
R+E+ K+ K++ KK + K K + E L+
Sbjct: 524 REEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILK 560
>gnl|CDD|201634 pfam01165, Ribosomal_S21, Ribosomal protein S21.
Length = 53
Score = 26.7 bits (60), Expect = 2.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKK 24
+R RR EK +K+K+KK++ ++
Sbjct: 31 LRRRRFYEKPSEKRKRKKREARR 53
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 29.5 bits (67), Expect = 2.1
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R+ R +E K+KKKKKKKKKKK++ ++
Sbjct: 78 RADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.7 bits (65), Expect = 3.1
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
E+ + ++ K+KKKKKKKKKKK E+++ EK
Sbjct: 73 GELYERADRAEELLKEKKKKKKKKKKKEELREWMCEK 109
Score = 28.0 bits (63), Expect = 6.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
R ++ ++ K+KKKKKKKKKKK++ E
Sbjct: 74 ELYERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 29.1 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+ +E+KKK+ + K+ +K +K+ ++IQ ++ E +++ R EI L ++I
Sbjct: 12 KSREEKKKEINDEYSKRIEKLEKECDSKIQSIK-EYYEKKMRAEISRLKKSI 62
>gnl|CDD|71622 pfam08188, Protamine_3, Spermatozal protamine family. This
family consists of the spermatozal protamines.
Spermatozal protamines play an important role in
remodelling of the sperm chromatin during mammalian
spermiogenesis. Nuclear elongation and chromatin
condensation are concomitant with modifications in the
basic protein complement associated with DNA. Somatic
histones are initially replaced by testis -specific
histone variants, then by transitional proteins, and
ultimately by protamines.
Length = 48
Score = 26.8 bits (58), Expect = 2.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+RRR KKK+K +++K +K ++K+K +
Sbjct: 1 ARRRHSMKKKRKSVRRRKTRKNQRKRKNS 29
Score = 25.6 bits (55), Expect = 6.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
RR+ KKK+K +++K +K ++K+K +
Sbjct: 2 RRRHSMKKKRKSVRRRKTRKNQRKRKNSL 30
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 29.1 bits (65), Expect = 2.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKK 31
EK K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 28.3 bits (63), Expect = 4.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKK 29
K+K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 28.0 bits (62), Expect = 5.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTE 33
K K KKK K KK KKK+ K E
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKRE 230
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTE 33
K K KK KK KKKKKKK
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
Score = 28.6 bits (64), Expect = 3.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 7 RKEKKKKKKKKKKKKKKKK 25
+ KK KK KKKKKKK+
Sbjct: 199 KSSAKKDKKSKKKKKKKRS 217
Score = 28.6 bits (64), Expect = 3.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKK 31
K K KK KK KKKKKKK+
Sbjct: 195 YKGDKSSAKKDKKSKKKKKKKRS 217
Score = 28.2 bits (63), Expect = 4.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKK 30
K K KK KK KKKKKKK
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKK 215
Score = 27.8 bits (62), Expect = 5.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKK 29
K K KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
Score = 27.8 bits (62), Expect = 6.2
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKK-----KKKKKKKTEIQQMELEKLQQRHREE 49
+R+ ++ K K K + K K +K K I+ E++++ H +E
Sbjct: 13 VRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQE 65
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 29.7 bits (67), Expect = 2.2
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ--QMELEKLQQRHREEIEALCRNIGI 59
I ++ ++KKK+ ++ ++K + +K +K E+ ++ +++ E IE GI
Sbjct: 483 IERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGI 542
Score = 28.5 bits (64), Expect = 4.9
Identities = 11/59 (18%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE---IEALCRNI 57
+R EK + + ++ +++ + K +K ++ + +E+L++ E+ +E L R +
Sbjct: 446 EELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 29.5 bits (66), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQME 38
K+KK+KKK KK K + TE + ME
Sbjct: 364 KRKKQKKKAKKASKTGEAATEGETME 389
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 29.3 bits (66), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 6 RRKEKKKKKKKKKKKKKK--KKKKKKKKTEIQQMELEKLQ 43
R+KEK+KK++ K +KK+ +K ++ + EL Q
Sbjct: 162 RKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQ 201
Score = 28.2 bits (63), Expect = 4.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 9 EKKKKKKKKKKKKKKKKKKKK 29
E +KK+K+KK++ K +KK+
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQS 179
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 29.4 bits (66), Expect = 2.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R K++ K +K K+ KK+KK+++K + +
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELDD 50
Score = 27.5 bits (61), Expect = 8.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ K + K +K K+ KK+KK+++K E
Sbjct: 21 PRPVKDEAKPRKIKRVKKRKKREEKDE 47
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex
which functions in messenger ribonucleoprotein
metabolism and plays a role in preventing the
transcription-associated genetic instability. Tho2,
along with four other subunits forms THO.
Length = 296
Score = 29.2 bits (66), Expect = 2.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
R K+ K+ KKKK+KK+ K+ I+++E E +
Sbjct: 33 IERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEH 77
Score = 29.2 bits (66), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
EK+ K+ KKKK+KK+ + +LE+ ++H E E
Sbjct: 37 EKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNE 79
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 28.5 bits (64), Expect = 2.4
Identities = 8/50 (16%), Positives = 26/50 (52%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ E + + KK+ ++ + ++ + + +L+K Q+ R++++ L
Sbjct: 85 NEMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDEL 134
>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional.
Length = 116
Score = 28.1 bits (62), Expect = 2.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQMELEK-LQQRH 46
KK KK K KKK K KTE ++ + K L+Q H
Sbjct: 7 KKPAKKAAKGAKKKGSKSKTETYKIYIYKVLKQVH 41
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal
protein S8e and similar proteins. This family contains
the eukaryotic/archaeal ribosomal protein S8, a
component of the small ribosomal subunits, as well as
the NSA2 gene product.
Length = 138
Score = 28.3 bits (64), Expect = 2.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKK 27
+ +R+ K K +KK+K + +K
Sbjct: 4 KHKRKATGGKFKVVRKKRKYELGRK 28
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 28.9 bits (65), Expect = 2.4
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
S+ +E + + K+ K K K EI + +
Sbjct: 69 SKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKD 105
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 4 SRRRKEKKKKKKKKKKKK--KKKKKKKKKKTEIQQ 36
+ R +E K+ + K K KK++K + + E+Q+
Sbjct: 80 AEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.1 bits (66), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
KEKKK K++KK K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEE 122
Score = 28.3 bits (64), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
EK+KKK K++KK K++K K E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEE 122
>gnl|CDD|234381 TIGR03888, nitrile_beta, nitrile hydratase, beta subunit. Members
of this protein family are the beta subunit of nitrile
hydratase. The alpha subunit is represented by model
TIGR01323. While nitrile hydratase is given the specific
EC number 4.2.1.84, nitriles are a class of compounds,
and one genome may carry more than one nitrile
hydratase. The enzyme occurs in both non-heme iron and
non-corrin cobalt forms [Energy metabolism, Amino acids
and amines].
Length = 223
Score = 28.9 bits (65), Expect = 2.8
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 255 GHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTI 291
G + + V HGI+ P Y+ ++YY+ W+ +
Sbjct: 44 GAFNID-EVRHGIERMNPA---DYLESSYYEKWVIGV 76
>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria.
Length = 325
Score = 29.2 bits (66), Expect = 2.8
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 18 KKKKKKKKKKKKKKTEIQQMELEKLQQRH------REEIEALCRNIGI 59
K ++ KK E+++ LE+ + R E+ AL R GI
Sbjct: 130 KYREYYAKKYGLSDEEVEEAILERKARAAAYAPANRSELAALARARGI 177
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 29.0 bits (65), Expect = 2.8
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIG 60
+ ++R ++ + K +KK+ +K++ +++ E +Q + + + G+
Sbjct: 332 IKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLI 391
Query: 61 CALPPPPPTVSRHTLYTLQFPQQD 84
A P PQ +
Sbjct: 392 DASPNEDTPSENEESKGSP-PQVE 414
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This
family includes outer membrane proteins such as OmpH
among others. Skp (OmpH) has been characterized as a
molecular chaperone that interacts with unfolded
proteins as they emerge in the periplasm from the Sec
translocation machinery.
Length = 140
Score = 28.3 bits (64), Expect = 2.8
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 19/69 (27%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKK---------KKKKKTEIQQMELE----------KLQQ 44
+R+ E +K +K+ +K K+K +K ++KK+ E+Q+ E LQ+
Sbjct: 28 KKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQK 87
Query: 45 RHREEIEAL 53
R +EE++ +
Sbjct: 88 RQQEELQKI 96
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 29.2 bits (65), Expect = 2.9
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 5 RRRKEKKKKKKKKKKKKKK----KKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
++R E ++K+++ K K K+ K+ E Q+ E+EK Q ++ E +
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKA 300
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 28.3 bits (64), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQME-LEKLQQRHR 47
KKKK K+ K K KKK + E+ K +++H+
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 28.3 bits (64), Expect = 3.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 3 RSRRRKEKKKKKKKKKKKK---------KKKKKKKKKK 31
+ ++ K+ K K KKK +++K+KKK K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 28.0 bits (63), Expect = 4.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 18 KKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K K KKKK K KK + ELEKL+
Sbjct: 79 KVKPKKKKPKSKKPKLSPEQELEKLEN 105
Score = 27.2 bits (61), Expect = 8.4
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
KKKK K+ K K KKK + E+L RE
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTR---------EELDAEARER 31
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
R KEK+++ K +++ + + K+ +Q+ LE +R +EE+
Sbjct: 191 ERALKEKREELLSKLEEELLARLESKEAALEKQLRLE--FEREKEELRK 237
Score = 29.2 bits (66), Expect = 3.0
Identities = 8/53 (15%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKK-KKKKTEIQQMELEKLQQRHREEIEA 52
++ + + + K+ +K+ + + +++K E++ +K +++ R+E+E
Sbjct: 201 LLSKLEEELLARLESKEAALEKQLRLEFEREKEELR----KKYEEKLRQELER 249
Score = 28.5 bits (64), Expect = 4.5
Identities = 10/55 (18%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKK--KKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ S+ +K+ + + +++K++ KK ++K + E+++ E +Q+ + E+
Sbjct: 212 RLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQA-EAHEQKLKNELALQ 265
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.3 bits (66), Expect = 3.0
Identities = 13/51 (25%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ---QRHREEIEAL 53
+E +K+ +K +++ +K ++ ++ K E++++EL L + R+E+E L
Sbjct: 194 LLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL 244
Score = 28.9 bits (65), Expect = 4.0
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R+ ++ ++ + ++ K++ ++K ELE+L + REE+ L
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL 388
Score = 28.9 bits (65), Expect = 4.1
Identities = 10/49 (20%), Positives = 28/49 (57%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
E+ +++ ++ +++ + ++ K + + ELE+ +Q +EE+E L
Sbjct: 750 EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEEL 798
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 28.9 bits (65), Expect = 3.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ R +K K KKKK K K K K K E
Sbjct: 204 LELQRELMKKGKGKKKKIVKDKDGKVVYKWKKE 236
Score = 28.5 bits (64), Expect = 3.6
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
K+K KKK+K K+ K++K+++KK + + LE LQ+ ++
Sbjct: 173 KKKSAKKKRKLYKELKERKEREKKLKKVEQRLE-LQRELMKK 213
Score = 28.1 bits (63), Expect = 4.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM-----ELEKLQQR 45
R R + +K +K+KKK KKK+K E+++ +L+K++QR
Sbjct: 156 RPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQR 203
Score = 27.3 bits (61), Expect = 8.9
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R+E + + + +K +K+KKK + ++ ++L++R E
Sbjct: 152 RRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKERE 194
Score = 27.3 bits (61), Expect = 9.5
Identities = 15/41 (36%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ +++ KKK+K K+ K++K+++KK KK E Q++EL++
Sbjct: 169 DEKQKKKSAKKKRKLYKELKERKEREKKLKKVE-QRLELQR 208
Score = 27.3 bits (61), Expect = 9.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + +KKK K K K K KK++K+
Sbjct: 211 MKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.0 bits (65), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
E+ K++ +KK+K KKK +K+K
Sbjct: 347 DEESKEEVEKKQKVKKKPRKRKVNPV 372
Score = 28.6 bits (64), Expect = 3.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
I E ++ K++ +KK+K KKK +K+
Sbjct: 338 IDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 28.7 bits (65), Expect = 3.2
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
I+ ++ ++ KK+ K K++ +K +K I+ M+
Sbjct: 98 TIKKSIKRLEELSKKEALKLKRELEKLEKYLGGIKNMK 135
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 27.3 bits (61), Expect = 3.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKK 30
K +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
Score = 26.6 bits (59), Expect = 6.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKK 28
+ +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
Score = 26.2 bits (58), Expect = 8.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 11 KKKKKKKKKKKKKKKKKKKKK 31
K +KK+K +KK++ KK K
Sbjct: 78 DKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 28.5 bits (63), Expect = 3.2
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
IR + R KK KKKK ++++ +K + E +++E E+++ REE
Sbjct: 103 IRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELE-ERMEWERREE 149
Score = 27.7 bits (61), Expect = 5.8
Identities = 10/43 (23%), Positives = 32/43 (74%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R+E+ +K ++++++ +++ + ++++ +I + E ++ Q+R REE
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREE 166
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/26 (42%), Positives = 23/26 (88%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
RRR+EK+++KK+ K++K+++K+ +K
Sbjct: 184 RRREEKERRKKQDKERKQREKETAEK 209
Score = 28.5 bits (64), Expect = 4.1
Identities = 11/29 (37%), Positives = 24/29 (82%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
RRR+E+K+++KK+ K++K+++K+ +K
Sbjct: 181 AERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 28.0 bits (63), Expect = 3.3
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
KE KKKKKK K K KKKK
Sbjct: 61 KEVKKKKKKSSLKSKSSSSSKKKK 84
>gnl|CDD|153283 cd07599, BAR_Rvs167p, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Reduced viability upon
starvation protein 167 and similar proteins. BAR
domains are dimerization, lipid binding and curvature
sensing modules found in many different proteins with
diverse functions. This subfamily is composed of fungal
proteins with similarity to Saccharomyces cerevisiae
Reduced viability upon starvation protein 167 (Rvs167p)
and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S.
cerevisiae Rvs167p plays a role in regulation of the
actin cytoskeleton, endocytosis, and sporulation. It
forms a heterodimer with another BAR domain protein
Rvs161p. Rvs161p and Rvs167p share common functions but
are not interchangeable. Their BAR domains cannot be
replaced with each other and the overexpression of one
cannot suppress the mutant phenotypes of the other.
Rvs167p also interacts with the GTPase activating
protein (GAP) Gyp5p, which is involved in ER to Golgi
vesicle trafficking. BAR domains form dimers that bind
to membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 216
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
++R KK K + K K +KKK+ + + +L KL+++
Sbjct: 117 KKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERK 157
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKK 23
MI + + +E K+++++ +++KK
Sbjct: 101 MIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 26.4 bits (58), Expect = 3.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ + R+ ++ K + + KKK KKK
Sbjct: 5 KKKWREANSERNKDNDLRSRVKKKAKKK 32
Score = 26.0 bits (57), Expect = 4.3
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+++ + ++ K + + KKK KK ++ EK
Sbjct: 4 RKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEK 41
Score = 25.2 bits (55), Expect = 6.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R ++ +E ++ K + + KKK KKK
Sbjct: 4 RKKKWREANSERNKDNDLRSRVKKKAKKKF 33
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 28.4 bits (64), Expect = 3.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 17 KKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
K KK KK+K++KKK ++++ L ++
Sbjct: 102 KYKKLSKKEKREKKKEALEKVGLNLKLKQ 130
>gnl|CDD|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 28.7 bits (65), Expect = 3.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 15/44 (34%)
Query: 95 INLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQY 138
+NL +GFLA E EA+ + + V RV V R Y
Sbjct: 102 VNLGHVGFLA-------------EAEAE-DLDEAVERV-VDRDY 130
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/40 (25%), Positives = 29/40 (72%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
E+ ++ KK+ K+K+++ K +K+ ++E +KL++++++
Sbjct: 91 EELERLKKELKEKEERLAKLRKELYKVKLERDKLRKQNKK 130
>gnl|CDD|130521 TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic acid synthesis
related protein. The enzymes in this equivalog are all
located in the operons for the biosynthesis of
3-amino-5-hydroxybenoic acid (AHBA), which is a
precursor of several antibiotics including ansatrienin ,
naphthomycin , rifamycin and mitomycin. The role that
this enzyme plays in this biosynthesis has not been
elucidated. This enzyme is a member of the Haloacid
dehalogenase superfamily (pfam00702) of
aspartate-nucleophile hydrolases. This enzyme is closely
related to phosphoglycolate phosphatase (TIGR01449), but
it is unclear what purpose a PGPase or PGPase-like
activity would serve in these biosyntheses. This model
is limited to the Gram positive Actinobacteria. The most
closely related enzyme below the noise cutoff is IndB
which is involved in the biosynthesis of Indigoidine in
Pectobacterium (Erwinia) chrysanthemi, a gamma
proteobacter. This enzyme is similarly related to PGP.
In this case, too it is unclear what role would be be
played by a PGPase activity.
Length = 205
Score = 28.3 bits (63), Expect = 3.6
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 64 PPPPPTVSRHTLYTLQFPQQDSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKR 123
P P P + R L L P +D++M + + ++ A + A++GE D +GEL A R
Sbjct: 130 PKPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAGTATVAALWGEGD-AGELLAAR 188
>gnl|CDD|100270 CHL00170, cpcA, phycocyanin alpha subunit; Reviewed.
Length = 162
Score = 28.0 bits (62), Expect = 3.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 102 FLAN--LVAVFGEYD-ISGELEAKRSISKNVRRVI 133
FL+N L A G + + LEA RS++ N +R+I
Sbjct: 18 FLSNGELQACNGRFQRAAASLEAARSLTSNAQRLI 52
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal
domain. The N-terminal domain appears to be specific
to the eukaryotic ribosomal proteins L25, L23, and
L23a.
Length = 52
Score = 26.1 bits (58), Expect = 3.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
K K K KK K KKK+K +T +
Sbjct: 2 KAKALKAKKAVLKGVHGKKKRKIRTSVT 29
>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain
found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1:
immunoglobulin (Ig)-like domain found in neuregulin
(NRG)-1. There are many NRG-1 isoforms which arise from
the alternative splicing of mRNA. NRG-1 belongs to the
neuregulin gene family, which is comprised of four
genes. This group represents NRG-1. NRGs are signaling
molecules, which participate in cell-cell interactions
in the nervous system, breast, and heart, and other
organ systems, and are implicated in the pathology of
diseases including schizophrenia, multiple sclerosis,
and breast cancer. The NRG-1 protein binds to and
activates the tyrosine kinases receptors ErbB3 and
ErbB4, initiating signaling cascades. NRG-1 has
multiple functions; for example, in the brain it
regulates various processes such as radial glia
formation and neuronal migration, dendritic
development, and expression of neurotransmitters
receptors; in the peripheral nervous system NRG-1
regulates processes such as target cell
differentiation, and Schwann cell survival.
Length = 76
Score = 26.9 bits (59), Expect = 4.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+R + K K+ K K K K +KKKK +E+Q
Sbjct: 14 LRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQ 47
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 28.1 bits (62), Expect = 4.0
Identities = 13/53 (24%), Positives = 34/53 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
R +EK++++++++ +K+K++ + + + E ++M LE+ + + E E L R
Sbjct: 92 RKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLER 144
>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal
structure and biogenesis].
Length = 187
Score = 28.3 bits (64), Expect = 4.1
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM------ELEKLQQRHREEI 50
+R+ RR K KK +K K+ + + KK + EIQ++ ++++L + +EI
Sbjct: 130 VRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDKEKEI 184
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 28.9 bits (65), Expect = 4.1
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 MIRSRRRKEKK-KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
++ S +EK K +K KK K+ + Q LEK+ + E++E + I
Sbjct: 464 ILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSKS-EKLEKISAKI 520
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 29.0 bits (64), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
+ KKKKKKKKK K K E + +E E++
Sbjct: 102 DDDTPSKKKKKKKKKGWFWAKSKQESKTIETEEI 135
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 27.2 bits (61), Expect = 4.1
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKT 32
EK++++K++KK+K +KK +++ K
Sbjct: 62 WLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 28.1 bits (63), Expect = 4.1
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ + +EKK+K + + ++++ K +K+K KT
Sbjct: 34 LKREKAQEKKRKAEAQAERRELKARKEKLKT 64
Score = 27.7 bits (62), Expect = 5.3
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +R K ++KK+K + + ++++ K +K+K
Sbjct: 32 LALKREKAQEKKRKAEAQAERRELKARKEK 61
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 28.9 bits (66), Expect = 4.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKK 23
I++ + + + KK K+KKK
Sbjct: 377 IKAAQARLRAAKKVKRKKKTSG 398
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 28.5 bits (64), Expect = 4.2
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 219 HAKTIINSFLCAGYANG-QRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPY 273
H K I + + G + C+GD GGPL+ + V+ + ++ A
Sbjct: 205 HRKLNIVNCYSNDLSIGTDQYLCKGDDGGPLIKNVSGKNTVIGFGATGNMEDNAND 260
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 28.9 bits (65), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
++KK K K KKK K+K+ + I +E
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLE 340
Score = 28.2 bits (63), Expect = 7.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++KK K K KKK K+K++E LE + + +E +L
Sbjct: 312 RRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEGDEDEKSSL 353
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells.
Vacuoles/lysosomes play an important role in the
degradation of both lipids and cellular proteins. In
order to perform this degradative function,
vacuoles/lysosomes contain numerous hydrolases which
have been transported in the form of inactive
precursors via the biosynthetic pathway and are
proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or
Golgi complex, or remain in the limiting membrane of
the MVB and are thereby transported to the limiting
membrane of the vacuole/lysosome as a consequence of
fusion. Therefore, the MVB sorting pathway plays a
critical role in the decision between recycling and
degradation of membrane proteins. A few archaeal
sequences are also present within this family.
Length = 169
Score = 28.0 bits (63), Expect = 4.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ + + EKK KK + + KK KK K
Sbjct: 13 LDKKQESLEKKIKKLEAEIKKLAKKGNKDA 42
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 28.6 bits (64), Expect = 4.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+R KK KKK K+KK+KK+ ++ E
Sbjct: 206 SLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEES 244
>gnl|CDD|204822 pfam12065, DUF3545, Protein of unknown function (DUF3545). This
family of proteins is functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 60 to 77 amino acids in
length. This protein has two completely conserved
residues (R and L) that may be functionally important.
Length = 59
Score = 26.1 bits (58), Expect = 4.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 20 KKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ K K KK+K EI+ + K ++R R+E++ +
Sbjct: 16 TRSKSKPKKRKWREIEAI---KDKRRLRKELQDM 46
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.1 bits (63), Expect = 4.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K +K++KK K++KK K +K+K E
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLE 120
Score = 28.1 bits (63), Expect = 5.2
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
K +K++KK K++KK K +K ++++ + H+E++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYGFCILDGHKEKV 135
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 27.3 bits (61), Expect = 4.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
KK++K K ++ K +K++ K K + E
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQRQAANDDE 70
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKK 30
K+++KK K K KKKK
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKK 26
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.4 bits (64), Expect = 4.7
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+KKK++KK+++K+ K+ E + +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELREDDDDDED 207
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 28.5 bits (64), Expect = 4.8
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL----QQRHR-----EEIE 51
++R++++KK + K+ ++K K+ +I+ + KL QQ + +EI+
Sbjct: 530 TKNRKKRQKKNEDNIKEAASALEQKLKELPLDIKSKNILKLRLYYQQNGKCMYTGKEID 588
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 27.5 bits (61), Expect = 4.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ KEKK K +K +KK+KKK E
Sbjct: 94 TEKPKPKEKKCPKCGSRKLVEKKEKKKGVFLE 125
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 28.1 bits (63), Expect = 4.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 2 IRSRRRKEKKK------KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
I+ R+K ++K + K KK KK K+KKK +K + EL K +Q
Sbjct: 136 IKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQ 184
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 28.1 bits (63), Expect = 4.9
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+K K+ +K+ ++ ++ KK KK + +QME+ Q
Sbjct: 75 KELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQ 114
Score = 27.3 bits (61), Expect = 8.2
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQ--QMELEKLQQR 45
K+ ++ ++ KK KK ++K+ E+ Q EL K+Q +
Sbjct: 86 KEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK 123
>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational
modification, protein turnover, chaperones].
Length = 119
Score = 27.3 bits (61), Expect = 4.9
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K K++ + +++K+ E++ LEK +++ +E +E L
Sbjct: 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEEL 103
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 28.6 bits (65), Expect = 5.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEI 34
K++ + K+ ++K+KK +K EI
Sbjct: 517 AYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 27.5 bits (62), Expect = 9.8
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
+E K++ + K+ ++K+KK E ++ ++
Sbjct: 514 EEIAYIKEQMEGSAPKEPEEKEKKPEKPEITID 546
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 28.3 bits (63), Expect = 5.0
Identities = 10/30 (33%), Positives = 23/30 (76%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
RS ++KEK++ + +K K+ ++KK+++K+
Sbjct: 162 RSGKQKEKRRVEDSQKHKEDRRKKQEEKRR 191
>gnl|CDD|143623 cd07751, PolyPPase_VTC4_like, Polyphosphate(polyP) polymerase
domain of yeast vacuolar transport chaperone (VTC)
protein VTC4, and similar proteins. Saccharomyces
cerevisiae VTC-1, -2, -3, and -4 comprise the
membrane-integral VTC complex. VTC-2,-3, and -4 contain
polyP polymerase domains. S. cerevisiae VTC4 belongs to
this subgroup. For VTC4 it has been shown that this
domain generates polyP from ATP by a phosphotransfer
reaction releasing ADP. This activity is metal
ion-dependent. The ATP gamma phosphate may be cleaved
and then transferred to an acceptor phosphate to form
polyP. PolyP is ubiquitous. In prokaryotes, it is a
store of phosphate and energy. In eukaryotes, polyPs
have roles in bone calcification, and osmoregulation,
and in phosphate transport in the symbiosis of
mycorrhizal fungi and plants. This subgroup belongs to
the CYTH/triphosphate tunnel metalloenzyme (TTM)-like
superfamily, whose enzymes have a unique active site
located within an eight-stranded beta barrel.
Length = 290
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K +K +K+ KK + + +K + TEIQ + L++
Sbjct: 136 KVFRKLRKEGKKSEAEIEKLEALATEIQYVILKR 169
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
Length = 256
Score = 28.2 bits (63), Expect = 5.0
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 3 RSRRRKEKKKKKKK----KKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+S+R ++K K K + K K K +K+ E Q E+ +L +
Sbjct: 84 KSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQ-KEMMELYKSG 130
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 27.9 bits (62), Expect = 5.1
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
+R E++ KK+++ +K ++ T + ++ H + +G
Sbjct: 112 AQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTPVSDISALTVG 165
>gnl|CDD|192151 pfam08781, DP, Transcription factor DP. DP forms a heterodimer
with E2F and regulates genes involved in cell cycle
progression. The transcriptional activity of E2F is
inhibited by the retinoblastoma protein which binds to
the E2F-DP heterodimer and negatively regulates the
G1-S transition.
Length = 141
Score = 27.3 bits (61), Expect = 5.1
Identities = 11/40 (27%), Positives = 30/40 (75%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
EK +++++K+ ++ ++K+ + ++ +QQ+ L+ L QR++E
Sbjct: 4 EKLEEERQKRIERIEQKQAQLQELILQQVALKNLVQRNQE 43
>gnl|CDD|234823 PRK00724, PRK00724, formate dehydrogenase accessory protein;
Reviewed.
Length = 263
Score = 28.2 bits (64), Expect = 5.1
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 130 RRVIVHRQYDAATFENDIALLELETPIA--YD--SHIVPICMPKDDDDF 174
R ++ +R + E+ +A E P+A Y+ SH V + P D +DF
Sbjct: 9 RTIVRYRDGLFSEREDTVAE---EVPVAIVYNGISHAVMMATPGDLEDF 54
>gnl|CDD|148169 pfam06401, Alpha-2-MRAP_C, Alpha-2-macroglobulin RAP, C-terminal
domain. The alpha-2-macroglobulin receptor-associated
protein (RAP) is a intracellular glycoprotein that binds
to the 2-macroglobulin receptor and other members of the
low density lipoprotein receptor family. The protein
inhibits binding of all currently known ligands of these
receptors. Two different studies have provided
conflicted domain boundaries.
Length = 205
Score = 27.8 bits (62), Expect = 5.3
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 8 KEKKKKKKKKKKKKKK------KKKKKKKKTEIQQMELEKLQQRHRE 48
EK K K+ +K +K K KK +K + +LE +H E
Sbjct: 158 HEKLKDKEHGDRKSEKYELLEEKIKKLGRKVKKHLQDLESRILKHNE 204
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.0 bits (63), Expect = 5.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 20 KKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
K+K + ++ K E + E E L+++ +EE +
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQ 232
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 26.1 bits (58), Expect = 5.4
Identities = 6/32 (18%), Positives = 25/32 (78%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ + +E+K++++++ +K++++K+++K K+
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKEREKNKS 56
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 26.6 bits (59), Expect = 5.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+KK+ K K K+ K KK T+ E
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTE 48
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 28.3 bits (63), Expect = 5.5
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPPPPPTVSRHT 74
K KK K KK++K KK IQ ++ + EI PT
Sbjct: 143 KGKKLVNKPKKRQKYKKATIQSPTSLTEEENYNTEI-------------CTVAPTDQIAK 189
Query: 75 LYTLQF 80
+ + F
Sbjct: 190 YFLMDF 195
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.2 bits (63), Expect = 5.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
EK +K+ ++K + +K K+ E + ELE+ EE++ RN
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE----MEELKERERNK 562
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 27.3 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R RK+ K +K K K K+KK K
Sbjct: 12 PKRSRKKGVKALRKAAVAKSKDKQKKPKSK 41
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 28.1 bits (63), Expect = 5.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R +E+ K +K KK+K++ K + +LE+ ++ E + AL
Sbjct: 34 RTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEEVCNETMMAL 81
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 27.8 bits (62), Expect = 5.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
E++K+ KK ++K+ + K + Q ELE
Sbjct: 151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLN 186
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino
acids in length.
Length = 87
Score = 26.6 bits (59), Expect = 6.0
Identities = 7/48 (14%), Positives = 25/48 (52%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
+++R K + + ++ +K + + K +++Q E ++ R+++
Sbjct: 27 KAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEENTRRLSRDDV 74
Score = 26.2 bits (58), Expect = 6.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELE----KLQQRHREEIEALCR 55
K KK +++ +K + + ++ TE E E K++Q++ E L R
Sbjct: 24 KLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEENTRRLSR 71
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is
unknown. It can be isolated from HeLa cell nucleoli and
is found to be homologous with Leydig cell tumour
protein whose function is unknown.
Length = 82
Score = 26.2 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ KKK+K KK + K KK +Q +L+K+
Sbjct: 14 AAVKAGKKKQKGPKKAGPRVIKPKKAQAVQAQKLKKVLT 52
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 28.0 bits (63), Expect = 6.2
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK-----------TEIQQMELEKLQQR 45
+ +EK K++ K K + +K T+ + L+K++
Sbjct: 19 AKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEAL 72
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 27.9 bits (63), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKK 31
E+ KK +K +K KKKKK++K
Sbjct: 188 EELIKKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 28.2 bits (63), Expect = 6.3
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
K +++ + + K+ +++ E + L+KL++R + +
Sbjct: 172 KFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQV 214
Score = 27.9 bits (62), Expect = 6.5
Identities = 7/44 (15%), Positives = 24/44 (54%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ + + K + + +K K+ E+ + EL++L + +++++
Sbjct: 92 ELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQ 135
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.5 bits (61), Expect = 6.6
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
KEK++KKK K+ K+++K++K+
Sbjct: 187 KEKEEKKKVKEAKRREKEEKRMAAL 211
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
M++ + ++EKKK K+ K+++K++K+ Q
Sbjct: 183 MLQQKEKEEKKKVKEAKRREKEEKRMAALVAAAAQ 217
Score = 27.1 bits (60), Expect = 8.9
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R R +E ++K+K++KKK K+ K+++K+
Sbjct: 176 RDPRFQEMLQQKEKEEKKKVKEAKRREKE 204
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 27.7 bits (62), Expect = 6.6
Identities = 6/52 (11%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ +R + K ++ ++K ++ ++++ + E+Q+++ ++ + +++ L
Sbjct: 39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE--INAKLQEL 88
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 26.7 bits (59), Expect = 6.7
Identities = 7/28 (25%), Positives = 21/28 (75%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQME 38
++K ++K+++KKK+++K++ E + +
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALA 100
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 27.0 bits (60), Expect = 6.7
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
I R KE+ +K + ++K KK ++ +++ + +EA R I
Sbjct: 4 QIEERLEKEQ----RKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVEA--RTI 54
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 27.9 bits (63), Expect = 6.8
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
+R R R+ K+K + K++++K+
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 27.5 bits (61), Expect = 6.9
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM-----ELEKLQQRHREEIEAL 53
R+R E+ ++ K K+K ++++K + ++ IQ++ LE+ Q+R +E++E
Sbjct: 74 RKRLERIQEAKTKEKHAQEREKTEINRSHIQEVVQSIKRLEEAQKRRQEKLEEK 127
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 27.8 bits (62), Expect = 6.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
R + +KEK KK+K+ K++ K K + M
Sbjct: 351 RVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTM 385
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 28.3 bits (64), Expect = 6.9
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+++ +E +K K+ + KK + +KKK+++ + +Q
Sbjct: 176 EAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQ 216
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 27.7 bits (61), Expect = 6.9
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 115 ISGELEAKRSISKNVRRVIVHRQYDA--ATFENDIALLELETPIAYDSHIVPICMP 168
+ G + +S+ ++ + D + I+LL L++P + +H++P +P
Sbjct: 60 VLGGHKTLKSVKGPYEQI---YRVDCRKDLPRSKISLLHLKSPATFSNHVLPTFVP 112
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 25.7 bits (57), Expect = 6.9
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 25 KKKKKKKTEIQQMELEKLQQRH----REEIEALCRNIGI 59
++K+ + T Q ELEK +++ REE E L + +G+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGL 39
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 27.7 bits (62), Expect = 7.0
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQ--QMELEKLQQRHREEIEALC 54
+ +++ K++ KK + + I+ QM++E+ Q+ EE+E L
Sbjct: 73 EAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLI 116
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 28.1 bits (62), Expect = 7.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 3 RSRRRKEKK---------KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++ RR +K ++K +KK +K++K KK + E Q E E E + +L
Sbjct: 112 KTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSL 171
>gnl|CDD|222346 pfam13728, TraF, F plasmid transfer operon protein. TraF protein
undergoes proteolytic processing associated with
export. The 19 amino acids at the amino terminus of the
polypeptides appear to constitute a typical membrane
leader peptide - not included in this family, while the
remainder of the molecule is predicted to be primarily
hydrophilic in character. F plasmid TraF and TraH are
required for F pilus assembly and F plasmid transfer,
and they are both localised to the outer membrane in
the presence of the complete F transfer region,
especially TraV, the putative anchor.
Length = 215
Score = 27.6 bits (62), Expect = 7.2
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ + K+ +K + + +QM L++ E
Sbjct: 6 NEPPEPKEPEKAPAPAAPAQSPSATEQMAW--LREYLEE 42
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 27.7 bits (62), Expect = 7.3
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1 MIRSRRRKEKKKKKKKKKKK-KKKKKKKKKKKTEIQQMELEKLQQRH--REEIEAL 53
MI+ ++ +E +++ ++ + K + KK + TEI + E + Q R +EIE L
Sbjct: 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKL 276
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 26.8 bits (59), Expect = 7.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 4 SRRRKEKKKKKKKKKKKKKK 23
S EKK +KK+KK
Sbjct: 58 SAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular stomatitis
virus (VSV) expressed in the absence of other viral
components causes many of the cytopathic effects of VSV,
including an inhibition of host gene expression and the
induction of cell rounding. It has been shown that M
protein also induces apoptosis in the absence of other
viral components. It is thought that the activation of
apoptotic pathways causes the inhibition of host gene
expression and cell rounding by M protein.
Length = 229
Score = 27.4 bits (61), Expect = 7.6
Identities = 16/93 (17%), Positives = 24/93 (25%), Gaps = 20/93 (21%)
Query: 14 KKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPPPPPTVSRH 73
K K K K+ KK K ++ M ++ PP
Sbjct: 4 FKLLKLKGKEVASKKSKGSKKLNMSMDW--------------------DAPPSYEETRPG 43
Query: 74 TLYTLQFPQQDSMMTNFDMFTINLSKIGFLANL 106
+ D M +D I K + L
Sbjct: 44 AAPSAPIFGVDDEMDTYDTLGIQTLKYLYKVEL 76
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 28.0 bits (62), Expect = 7.6
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R+ +++++ K K KK+++K+K+ +K+TE
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETE 85
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 27.6 bits (62), Expect = 7.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
R KE+ K + K K + KK+KK E
Sbjct: 86 RFKERGTGKGRPVPKPKFEFKKEKKVIEKLP 116
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.4 bits (61), Expect = 7.8
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
EK+ + ++ KKK++ + K + + EL+ +Q++ + I+
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIK 119
Score = 27.4 bits (61), Expect = 8.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
S ++ KKK++ + KKKK+ ++ K + +I Q EK
Sbjct: 84 SLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEK 121
>gnl|CDD|220628 pfam10198, Ada3, Histone acetyltransferases subunit 3. Ada3 is a
family of proteins conserved from yeasts to humans. It
is an essential component of the Ada transcriptional
coactivator (alteration/deficiency in activation)
complex. Ada3 plays a key role in linking histone
acetyltransferase-containing complexes to p53 (tumour
suppressor protein) thereby regulating p53 acetylation,
stability and transcriptional activation following DNA
damage.
Length = 127
Score = 26.9 bits (60), Expect = 7.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQ 36
K+ + + KKKKK+K+ Q+
Sbjct: 91 LKRIRARGKKKKKEKRPGAAQK 112
>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated
in de novo protein folding [Posttranslational
modification, protein turnover, chaperones].
Length = 145
Score = 26.9 bits (60), Expect = 8.0
Identities = 8/45 (17%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+K ++ +K +K ++ + ++ +++Q E ++LQQ+ +
Sbjct: 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQ-EAQQLQQKQAAAQK 143
>gnl|CDD|148635 pfam07139, DUF1387, Protein of unknown function (DUF1387). This
family represents a conserved region approximately 300
residues long within a number of hypothetical proteins
of unknown function that seem to be restricted to
mammals.
Length = 301
Score = 27.7 bits (61), Expect = 8.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
KKK KKKK K K + + E +Q
Sbjct: 6 KKKNKKKKSKPKPEAPAKSASKEETTPEEQ 35
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 27.7 bits (62), Expect = 8.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
R + KEKK KK+ K++++ + K ++ EI
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAEI 424
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 27.6 bits (61), Expect = 8.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
+EKK KK K+ K KK KT
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKT 38
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved
in a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 26.4 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 5 RRRKEKKKKKK--------KKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
RR+K KK KK +KK ++ K+ +KK + + E++ L+++ + L
Sbjct: 42 RRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKEQLSKAEVDLN 99
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 27.4 bits (61), Expect = 8.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
IR R+ K ++K +K K++++++ + +LEK
Sbjct: 120 IRMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEK 159
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 27.7 bits (62), Expect = 8.3
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +R + K+K+ + K+K + ++KK
Sbjct: 285 TLHKKRVRGKQKRSLRDKQKVLRAHILRQKK 315
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 26.8 bits (60), Expect = 8.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 16 KKKKKKKKKKKKKKKKTEIQQMELEK 41
K++++ +KK+K++K E +Q LE+
Sbjct: 99 KRQEELRKKEKQEKTDEEREQKLLEE 124
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 27.5 bits (62), Expect = 8.5
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 33 EIQQMELEKLQQR------HREEIEALCRNI 57
EI++ ELE+ ++ E +E L R++
Sbjct: 354 EIREEELERALKKLGPGEDEEEVLEKLARSL 384
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 26.6 bits (59), Expect = 8.5
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKK------KKKTEIQQMELEKLQQRHREEIEA 52
+E+K +K+++K+ + K+K KK+ E + E +++ REE+E
Sbjct: 67 IAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEE--EEKEREELEE 117
Score = 26.6 bits (59), Expect = 9.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ K K++KK+ K ++K+ +K + LE ++R RE
Sbjct: 25 DSIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKRE 64
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at
their amino terminus. This family represents the rest
of these proteins.
Length = 244
Score = 27.4 bits (61), Expect = 8.7
Identities = 12/49 (24%), Positives = 30/49 (61%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
M R+++ E+ ++ + ++K K+++++ + E + ELE+ +R EE
Sbjct: 21 MRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEE 69
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 27.8 bits (61), Expect = 8.7
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKK--KKTEIQQMELEKLQQRHREEIEAL 53
R RKE++ KK K K KK+ KK + + +E+ +EE+E +
Sbjct: 444 RQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIER-TAASKEELELI 495
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 27.1 bits (60), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKK 28
I S+ E + KKKK K KK K++
Sbjct: 177 IISKAWSELDESKKKKYIDKYKKLKEE 203
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 27.6 bits (62), Expect = 8.7
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
KKK +KKK KKKK+K+KK ++ ++++E E
Sbjct: 270 KKKIRKKKIKKKKEKEKKPEENEILERIENE 300
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 27.3 bits (61), Expect = 8.9
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R R K +K+K+ ++ +++ ++ I+ + +K + EEI
Sbjct: 212 ARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSE--LLEEIAEA 261
>gnl|CDD|223435 COG0358, DnaG, DNA primase (bacterial type) [DNA replication,
recombination, and repair].
Length = 568
Score = 27.8 bits (62), Expect = 8.9
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMEL 39
+ K KKK KK K+ ++Q L
Sbjct: 534 KGLKNLIGAKKKSGLNKKPKEDLNVLTKDLQLELL 568
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 27.4 bits (61), Expect = 9.0
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI------QQMELEKLQQRHREEIEAL 53
R RR +++ + +KKK++ +K +K EI + EK + ++R+E E
Sbjct: 118 RERRDLRIEERDEASEKKKEELIEKAQK--EIDDFYENYNEKKEKTKAQNRKEAEQF 172
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 27.7 bits (61), Expect = 9.2
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
+R K+ +K+ +KK + K++KK K K +++ + + H+
Sbjct: 207 KRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHK 249
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 26.6 bits (59), Expect = 9.2
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
RS++ K +K+K K KK K+ + LEK+++ + L
Sbjct: 9 RSKKEDPKPEKEKPKSWSNLKKVILLKRFVK----SLEKVRKFNPRGPNFL 55
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 27.8 bits (62), Expect = 9.3
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 28 KKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
+ + ++ E E RE AL IG
Sbjct: 299 RNAEQDLPDREGEI--ANAREAAAALLAQIG 327
>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine
triphosphatases (GTPases). The Ras2 subfamily, found
exclusively in fungi, was first identified in Ustilago
maydis. In U. maydis, Ras2 is regulated by Sql2, a
protein that is homologous to GEFs (guanine nucleotide
exchange factors) of the CDC25 family. Ras2 has been
shown to induce filamentous growth, but the signaling
cascade through which Ras2 and Sql2 regulate cell
morphology is not known. Most Ras proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of most
Ras proteins.
Length = 190
Score = 27.1 bits (60), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKK 26
+R +R+ + K KKK+KKK+K
Sbjct: 161 ALRQQRQGGQGPKGGPTKKKEKKKRK 186
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 27.6 bits (62), Expect = 9.5
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ-MELEKLQQRHREEIEA 52
R E++K ++ + KK + + K K + + K ++ +
Sbjct: 461 RLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIV 507
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 27.6 bits (62), Expect = 9.8
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 28 KKKKTEIQQMELEKLQQRH------REEIEALCRNI 57
+++ ++++ ELEK ++ E +E L R++
Sbjct: 343 REQAEDVREEELEKALKKLPNGEDEEEVLEKLARSL 378
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 27.5 bits (61), Expect = 9.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
S+++ K KK K K KK KKT
Sbjct: 227 SKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 27.6 bits (61), Expect = 9.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 4 SRRRKEKKKKKKKKKKKK---KKKKKKKKKKTEIQQMELEKLQQRHR-----EEIE 51
RR K KK KK KK ++ KK+KKK M + +++ + EEIE
Sbjct: 606 GRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIE 661
>gnl|CDD|234582 PRK00028, infC, translation initiation factor IF-3; Reviewed.
Length = 177
Score = 27.1 bits (61), Expect = 10.0
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQMEL 39
K K ++KKK+K+ KKK+K E+++++
Sbjct: 70 KFKYEQKKKQKEAKKKQKVIEVKEIKF 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,429,064
Number of extensions: 1503938
Number of successful extensions: 17079
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12236
Number of HSP's successfully gapped: 1561
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)