RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15291
(295 letters)
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 257 bits (658), Expect = 3e-84
Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 103 LANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHI 162
L + GE+D E E + +R+VI+H ++ T ND+ALL L+ P+ +I
Sbjct: 188 LDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNI 247
Query: 163 VPICMPKDDDDFTGRVATVSGWGRLKYG--GGVPSVLQEVQVPVIENNVCQEMFQTA--G 218
IC+P+ F SGWG+ ++G ++L+++Q+P ++ + CQ + G
Sbjct: 248 GTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLG 307
Query: 219 HAKTIINSFLCAGYANGQRDSCEGDSGGPLM--IEREDGHWVLAGTVSHGIKCAAPYLPG 276
+ +F+CAG G +D+C GD G PL R ++ G V+ GI C +PG
Sbjct: 308 LKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPG 366
Query: 277 VYMRTTYYKPWLQTIT 292
VY +++ W+
Sbjct: 367 VYANVAHFRNWIDQEM 382
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 247 bits (634), Expect = 1e-82
Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
A + V GE+D S +++ V + V+ YD AT END+++++ I +D ++
Sbjct: 51 ALVSLVVGEHDSSAASTVRQTHD--VDSIFVNENYDPATLENDVSVIKTAVAITFDINVG 108
Query: 164 PICMPKDDDDFTGRVATVSGWGRLKYGG-GVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
PIC P +D+ R + SGWG + GG P+VL+ V + + N C ++ + T
Sbjct: 109 PICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY----TSDT 164
Query: 223 IINSFLCAGYANGQ--RDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMR 280
I + +CA G RDSC+GDSGGPL ++ G + L G VS GI CA+ Y PGVY R
Sbjct: 165 IYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGY-PGVYSR 223
Query: 281 TTYYKPWLQTIT 292
++ W+
Sbjct: 224 VGFHAGWITDTI 235
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 247 bits (634), Expect = 2e-82
Identities = 71/193 (36%), Positives = 97/193 (50%), Gaps = 7/193 (3%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
NL+AV GE+D+S ++S V +VI+ Y T +DIALL L P+ H+V
Sbjct: 50 RNLIAVLGEHDLSEHDGDEQSRR--VAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVV 107
Query: 164 PICMPKDDDDF----TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGH 219
P+C+P+ R + VSGWG+L G L + VP + C + + G
Sbjct: 108 PLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGD 167
Query: 220 AKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYM 279
+ I CAGY++G +DSC+GDSGGP G W L G VS G CA GVY
Sbjct: 168 SPNITEYMFCAGYSDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGHFGVYT 226
Query: 280 RTTYYKPWLQTIT 292
R + Y WLQ +
Sbjct: 227 RVSQYIEWLQKLM 239
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 247 bits (633), Expect = 2e-82
Identities = 70/192 (36%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
A G +D S + A + ++R+I H ++ TF+ DIALLELE P Y S +
Sbjct: 56 TQWTAFLGLHDQS-QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVR 114
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
PI +P F G+ V+GWG +YGG +LQ+ ++ VI C+ +
Sbjct: 115 PISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ----- 169
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I +C G+ +G DSC+GDSGGPL DG AG VS G CA PGVY R
Sbjct: 170 ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLP 229
Query: 283 YYKPWLQTITGV 294
++ W++ TGV
Sbjct: 230 LFRDWIKENTGV 241
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 244 bits (626), Expect = 2e-81
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 7/189 (3%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
+ A+ G + S +++ + + ++++ Y+ +NDIA++ LE + Y +I
Sbjct: 51 SKWTAILGLHMKSNLTSP-QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQ 109
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
PI +P+++ F GR +++GWG + Y G +LQE VP++ N CQ+
Sbjct: 110 PISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQM----PEYN 165
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I + +CAGY G DSC+GDSGGPLM + E+ W LAG S G +CA P PGVY R +
Sbjct: 166 ITENMICAGYEEGGIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVS 224
Query: 283 YYKPWLQTI 291
+ W+Q+
Sbjct: 225 RFTEWIQSF 233
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 240 bits (614), Expect = 1e-79
Identities = 68/192 (35%), Positives = 100/192 (52%), Gaps = 10/192 (5%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
A A FG +++ +RR+IVH +Y + + DI+L EL +P+ Y + +
Sbjct: 50 ARWTASFGVTIKPSKMKRG------LRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVH 103
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
+C+P +F G V V+G+G LK G + L++ QV +I+ C E
Sbjct: 104 RVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYND---A 160
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I LCAG G+ D+C+GDSGGPL+ W LAG VS G +CA P PGVY R T
Sbjct: 161 ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVT 220
Query: 283 YYKPWLQTITGV 294
+ W+ + TG+
Sbjct: 221 ALRDWITSKTGI 232
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 240 bits (614), Expect = 2e-79
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 7/209 (3%)
Query: 88 TNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDI 147
+ T+ S + ++ + G++ E ++ + V+ +H QYD TFEND+
Sbjct: 48 LDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLG--VKHTTLHPQYDPNTFENDV 105
Query: 148 ALLELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIEN 207
AL+EL ++ ++PIC+P + G + VSGWG+ + P L E+++P++++
Sbjct: 106 ALVELLESPVLNAFVMPICLP-EGPQQEGAMVIVSGWGKQ-FLQRFPETLMEIEIPIVDH 163
Query: 208 NVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLM-IEREDGHWVLAGTVSHG 266
+ CQ+ + + +CAG G +D+C GDSGGP++ + RE G W L GTVS G
Sbjct: 164 STCQKAYAPLKK--KVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWG 221
Query: 267 IKCAAPYLPGVYMRTTYYKPWLQTITGVQ 295
C GVY + K W+Q +TGV+
Sbjct: 222 DDCGKKDRYGVYSYIHHNKDWIQRVTGVR 250
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 238 bits (609), Expect = 8e-79
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 93 FTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQY---DAATFENDIAL 149
+ A+L G ++ E + + +RRV VH Y ++ FE DIAL
Sbjct: 41 LYPKEHEAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 97
Query: 150 LELETPIAYDSHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENN 208
LELE + +++PIC+P +D + G + VSG+G ++ + L+ V++PV
Sbjct: 98 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME--EKIAHDLRFVRLPVANPQ 155
Query: 209 VCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIERED-GHWVLAGTVSHGI 267
C+ + + CAG+ + ++D+C+GDSGG + + WV G VS GI
Sbjct: 156 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI 215
Query: 268 KCAAPYLPGVYMRTTYYKPWLQTIT 292
C+ G Y + Y W++
Sbjct: 216 GCSRG--YGFYTKVLNYVDWIKKEM 238
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 235 bits (602), Expect = 9e-78
Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 8/186 (4%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
+ L V GE D+S +++ I V ++I+H +D +NDI+LL+L + ++ ++
Sbjct: 56 SGLQIVAGELDMSVNEGSEQII--TVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVA 113
Query: 164 PICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
PI +P+ V+GWG GG P VLQ+V VP++ + C+ + A I
Sbjct: 114 PIALPEQGHTA-TGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY----GADEI 168
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
++S +CAG G +DSC+GDSGGPL + G LAG VS G CA P PGVY +Y
Sbjct: 169 LDSMICAGVPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSY 227
Query: 284 YKPWLQ 289
+ W++
Sbjct: 228 HVDWIK 233
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 234 bits (600), Expect = 2e-77
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 8/186 (4%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
G ++S K + ++ +I+H+ Y + +DIAL++L+ P+ Y PI +
Sbjct: 57 IYSGILELSDI--TKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISL 114
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
P D T V+GWG K G + ++LQ+V +P++ N CQ+ + I
Sbjct: 115 PSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY----QDYKITQR 170
Query: 227 FLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKP 286
+CAGY G +D+C+GDSGGPL+ + +G W L G S G CA PGVY + Y
Sbjct: 171 MVCAGYKEGGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMD 229
Query: 287 WLQTIT 292
W+ T
Sbjct: 230 WILEKT 235
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 235 bits (602), Expect = 3e-77
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 16/195 (8%)
Query: 110 FGEYDISGELE---------AKRSISKNVRRVIVHRQYDAATFE--NDIALLELETPIAY 158
GE++ + + + + I + I H Y + + +DIAL+ L + +
Sbjct: 86 LGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEF 145
Query: 159 DSHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTA 217
++I P+C+P+ +++ G+ TV GWGR G ++ Q++ VPV+ C + F A
Sbjct: 146 TNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAVPVVHAEQCAKTFGAA 204
Query: 218 GHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGV 277
G + +S LCAG +DSC GDSGGPL+ ER + + L G VS G C PG+
Sbjct: 205 GV--RVRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGI 261
Query: 278 YMRTTYYKPWLQTIT 292
Y + Y+ W++
Sbjct: 262 YTKVGKYRDWIEGNI 276
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 233 bits (596), Expect = 4e-77
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 13/188 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
++ A G D+ K +V+ + T+ D AL++L PI P
Sbjct: 47 SITATGGVVDLQSSSAVKV----RSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----P 97
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTII 224
+ TV+GWG + GG L + VP + + C+ +
Sbjct: 98 TLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS----SFILVA 153
Query: 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYY 284
N +CAGY Q D+C+GDSGGP+ + WV G VS G CA GVY + +
Sbjct: 154 NEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF 213
Query: 285 KPWLQTIT 292
+ +
Sbjct: 214 ASAIASAA 221
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 233 bits (597), Expect = 6e-77
Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
G+ + E + V VI H ++ T++ DIA+L L+TPI + ++ P
Sbjct: 49 RFKVRVGDRNTEQEEGGEAVH--EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 165 ICMPKDD----DDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHA 220
C+P+ D T + VSG+GR G + L+ ++VP ++ N C+
Sbjct: 107 ACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSS----- 161
Query: 221 KTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMR 280
I + CAGY Q D+C+GDSGGP + + + G VS G CA G+Y +
Sbjct: 162 FIITQNMFCAGYDTKQEDACQGDSGGPHVTR-FKDTYFVTGIVSWGEGCARKGKYGIYTK 220
Query: 281 TTYYKPWLQTIT 292
T + W+
Sbjct: 221 VTAFLKWIDRSM 232
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 235 bits (601), Expect = 2e-76
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 93 FTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQY---DAATFENDIAL 149
+ A+L G ++ E + + +RRV VH Y ++ FE DIAL
Sbjct: 130 LYPKEHEAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 186
Query: 150 LELETPIAYDSHIVPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENN 208
LELE + +++PIC+P +D + G + VSG+G ++ + L+ V++PV
Sbjct: 187 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME--EKIAHDLRFVRLPVANPQ 244
Query: 209 VCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIERED-GHWVLAGTVSHGI 267
C+ + + CAG+ + ++D+C+GDSGG + + WV G VS GI
Sbjct: 245 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI 304
Query: 268 KCAAPYLPGVYMRTTYYKPWLQTIT 292
C+ G Y + Y W++
Sbjct: 305 GCSRG--YGFYTKVLNYVDWIKKEM 327
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 231 bits (592), Expect = 3e-76
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
L G + S E V+ +I+H QY A DIALL+LET + Y
Sbjct: 53 KILRVYSGILNQSEIKEDTSFFG--VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQR 110
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
PI +P + V+GWG K + + LQ+ ++P++ N CQ+ +
Sbjct: 111 PISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHK 166
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I + +CAGY G +D+C+GDSGGPL + + W L G S G CA PGVY
Sbjct: 167 ITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVV 225
Query: 283 YYKPW-LQTITGV 294
Y W L+ V
Sbjct: 226 EYVDWILEKTQAV 238
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 230 bits (590), Expect = 5e-76
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 13/195 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA--TFENDIALLELETPIAYDSHI 162
+ V GE++I ++ + V R+I H ++AA T+ +DIALLEL+ P+ +S++
Sbjct: 48 KITVVAGEHNIEETEHTEQKRN--VIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYV 105
Query: 163 VPICMPKDDDD---FTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGH 219
PIC+ + VSGWGR+ + G VLQ ++VP+++ C +
Sbjct: 106 TPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK---- 161
Query: 220 AKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYM 279
TI N+ CAG+ G RDSC+GDSGGP + E +G L G +S G +CA G+Y
Sbjct: 162 -FTITNNMFCAGFHEGGRDSCQGDSGGPHVTE-VEGTSFLTGIISWGEECAMKGKYGIYT 219
Query: 280 RTTYYKPWLQTITGV 294
+ + Y W++ T +
Sbjct: 220 KVSRYVNWIKEKTKL 234
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 234 bits (598), Expect = 4e-75
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 93 FTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQY---DAATFENDIAL 149
+ A+L G ++ E + + +RRV VH Y ++ FE DIAL
Sbjct: 198 LYPKEHEAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 254
Query: 150 LELETPIAYDSHIVPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENN 208
LELE + +++PIC+P +D + G + VSG+G ++ + L+ V++PV
Sbjct: 255 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVME--EKIAHDLRFVRLPVANPQ 312
Query: 209 VCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIERED-GHWVLAGTVSHGI 267
C+ + + CAG+ + ++D+C+GDSGG + + WV G VS GI
Sbjct: 313 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGI 372
Query: 268 KCAAPYLPGVYMRTTYYKPWLQTIT 292
C+ G Y + Y W++
Sbjct: 373 GCSRG--YGFYTKVLNYVDWIKKEM 395
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 227 bits (581), Expect = 2e-74
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 12/195 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDA-ATFENDIALLELETPIAYDSHIV 163
L G + V +H Y A F+NDIAL++L + +S+I
Sbjct: 50 ALDIRMGTLKRLSPHYTQAW----SEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNIT 105
Query: 164 PICMPKDDDDF---TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHA 220
PIC+P+ + + T + T SGWG + G + L V +P++++ C ++ +
Sbjct: 106 PICLPRKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPPYP 164
Query: 221 KTII-NSFLCAGYANGQRDSCEGDSGGPLMIE-REDGHWVLAGTVSHG-IKCAAPYLPGV 277
+ + + LCAG +G +DSC GDSGG L+ E W + G VS G + C GV
Sbjct: 165 RGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGV 224
Query: 278 YMRTTYYKPWLQTIT 292
Y + Y PW++ I
Sbjct: 225 YTKVINYIPWIENII 239
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 237 bits (606), Expect = 6e-74
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
L G + S E V+ +I+H QY A DIALL+LET + Y
Sbjct: 440 KILRVYSGILNQSEIKEDTSFFG--VQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQR 497
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
PIC+P D V+GWG K + + LQ+ ++P++ N CQ+ +
Sbjct: 498 PICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY----RGHK 553
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
I + +CAGY G +D+C+GDSGGPL + + W L G S G CA PGVY
Sbjct: 554 ITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVV 612
Query: 283 YYKPWLQTIT 292
Y W+ T
Sbjct: 613 EYVDWILEKT 622
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 225 bits (576), Expect = 1e-73
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 9/190 (4%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
G+ ++ E EA S+ V + VH ++++ NDIAL++L + I C+
Sbjct: 68 VALGKNNLEVEDEA-GSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACL 126
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
P + V+GWGRL G + + LQ+ PV++ C + T+ +
Sbjct: 127 PSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGT---TVKET 183
Query: 227 FLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVS--HGIKCAAPYLPGVYMRTTYY 284
+CAG G +C GDSGGPL + DG W + G VS G+ C P V+ R + Y
Sbjct: 184 MVCAGGD-GVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAY 241
Query: 285 KPWLQTITGV 294
W+ +
Sbjct: 242 IDWINQKLQL 251
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 226 bits (578), Expect = 1e-73
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-TFENDIALLELETPIAYDSHIV 163
+L+ G++ + E + ++ +H +Y+ + DIAL++L+ P+A+ +I
Sbjct: 88 DLLVRIGKHSRT-RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 164 PICMPKDDDDF----TGRVATVSGWGRLK------YGGGVPSVLQEVQVPVIENNVCQEM 213
P+C+P + G V+GWG LK G G PSVLQ V +P++E VC++
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 206
Query: 214 FQTAGHAKTIINSFLCAGYA---NGQRDSCEGDSGGPLMIERE-DGHWVLAGTVSHGIKC 269
+ I ++ CAGY + D+CEGDSGGP +++ + W G VS G C
Sbjct: 207 TR-----IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGC 261
Query: 270 AAPYLPGVYMRTTYYKPWLQTIT 292
G Y K W+Q +
Sbjct: 262 DRDGKYGFYTHVFRLKKWIQKVI 284
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 226 bits (578), Expect = 2e-73
Identities = 60/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Query: 108 AVFGEYDISGELEAKRSISK---NVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+FG ++ V ++I+H +Y A++ NDIAL+++ P+ I P
Sbjct: 60 LIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGP 119
Query: 165 ICMPKDDDDF--TGRVATVSGWGRLKYGGGVPS-VLQEVQVPVIENNVCQEMFQTAGHAK 221
C+P+ + V+GWG L+ S +LQE +V +I+ +C G
Sbjct: 120 GCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNG--- 176
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIERE-DGHWVLAGTVSHGIKCAAPYLPGVYMR 280
I ++ +CAGY G+ D+C+GDSGGPLM + + +V+ G S G+ CA PGVY
Sbjct: 177 RIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTS 236
Query: 281 TTYYKPWLQTITG 293
T Y W+ + G
Sbjct: 237 TWSYLNWIASKIG 249
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 224 bits (574), Expect = 3e-73
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-TFENDIALLELETPIAYDSHIV 163
+L+ G++ + E + ++ +H +Y+ + DIAL++L+ P+A+ +I
Sbjct: 58 DLLVRIGKHSRT-RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 164 PICMPKDDDDF----TGRVATVSGWGRLK------YGGGVPSVLQEVQVPVIENNVCQEM 213
P+C+P + G V+GWG LK G G PSVLQ V +P++E VC++
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 176
Query: 214 FQTAGHAKTIINSFLCAGYA---NGQRDSCEGDSGGPLMIERE-DGHWVLAGTVSHGIKC 269
+ I ++ CAGY + D+CEGDSGGP +++ + W G VS G C
Sbjct: 177 TR-----IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGC 231
Query: 270 AAPYLPGVYMRTTYYKPWLQTIT 292
G Y K W+Q +
Sbjct: 232 DRDGKYGFYTHVFRLKKWIQKVI 254
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 224 bits (573), Expect = 3e-73
Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 18/198 (9%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
L+ GEYD+ + + + ++ V VH Y +T +NDIALL L P IVP
Sbjct: 49 KLLVRLGEYDLRRWEKWELDLD--IKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVP 106
Query: 165 ICMP-----KDDDDFTGRVATVSGWGRLKYGG-----GVPSVLQEVQVPVIENNVCQEMF 214
IC+P + + + G+ V+GWG VL +++PV+ +N C E+
Sbjct: 107 ICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM 166
Query: 215 QTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYL 274
+ + LCAG ++D+CEGDSGGP++ G W L G VS G C +
Sbjct: 167 S-----NMVSENMLCAGILGDRQDACEGDSGGPMVAS-FHGTWFLVGLVSWGEGCGLLHN 220
Query: 275 PGVYMRTTYYKPWLQTIT 292
GVY + + Y W+
Sbjct: 221 YGVYTKVSRYLDWIHGHI 238
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 224 bits (572), Expect = 5e-73
Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 10/195 (5%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
G + + E + + ++ +I H Y + DIALL+L PI + +I PI +
Sbjct: 54 VKLGAHQLDSYSEDAKVST--LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISL 111
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPS--VLQEVQVPVIENNVCQEMFQTAGHAKT-- 222
P F G TV+GWG + + + LQ+++VP+I C ++ +
Sbjct: 112 PAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPH 171
Query: 223 -IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRT 281
+ +CAGY G +D+C+GDSGGPL +G W L G VS G C A PGVY
Sbjct: 172 FVQEDMVCAGYVEGGKDACQGDSGGPLSCP-VEGLWYLTGIVSWGDACGARNRPGVYTLA 230
Query: 282 TYYKPW-LQTITGVQ 295
+ Y W +T +Q
Sbjct: 231 SSYASWIQSKVTELQ 245
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 222 bits (569), Expect = 9e-73
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAAT--FENDIALLELETPIAYDSHI 162
N+ + G + S + + NV +H Y A T + NDIA+L L T I+ +I
Sbjct: 53 NIRVIAGLWQQSDT---SGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNI 109
Query: 163 VPICMPKDDDDF-TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
+P ++++ G +SGWGR +P +LQ+ +PVI C G
Sbjct: 110 QAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVG-GA 168
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVS----HGIKCAAPYLPGV 277
I ++ +C G +C GDSGGPL DG + G S G+ P P V
Sbjct: 169 NIWDNHICVQDPAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGACLPDYPSV 226
Query: 278 YMRTTYYKPWLQTIT 292
Y R + Y W+ +
Sbjct: 227 YTRVSAYLGWIGDNS 241
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 226 bits (579), Expect = 1e-72
Identities = 63/200 (31%), Positives = 91/200 (45%), Gaps = 17/200 (8%)
Query: 103 LANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQY------DAATFENDIALLELETPI 156
L+ G + + V+ V+ H Y ++ NDIAL+ L +P+
Sbjct: 167 LSRWRVFAGAVAQASPHGLQLG----VQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPL 222
Query: 157 AYDSHIVPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQ 215
+I P+C+P G++ TV+GWG +Y G VLQE +VP+I N+VC
Sbjct: 223 PLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF 282
Query: 216 TAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIE---REDGHWVLAGTVSHGIKCAAP 272
I CAGY G D+C+GDSGGP + E W L G VS G CA
Sbjct: 283 YGN---QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALA 339
Query: 273 YLPGVYMRTTYYKPWLQTIT 292
PGVY + + ++ W+
Sbjct: 340 QKPGVYTKVSDFREWIFQAI 359
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 222 bits (567), Expect = 2e-72
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
E + + V R+IVH Q+ DIALLELE P+ S + + +
Sbjct: 58 VQLREQHLYYQ-----DQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVML 112
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPS--VLQEVQVPVIENNVCQEMFQTAGHA---- 220
P + F G V+GWG + +P L++V+VP++EN++C + +
Sbjct: 113 PPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDV 172
Query: 221 KTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMR 280
+ I + LCAG QRDSC+GDSGGPL+ + +G W+ AG VS G CA P PG+Y R
Sbjct: 173 RIIRDDMLCAGN--SQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTR 229
Query: 281 TTYYKPWLQTI 291
TYY W+
Sbjct: 230 VTYYLDWIHHY 240
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 223 bits (569), Expect = 1e-70
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 12/195 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDA-ATFENDIALLELETPIAYDSHIV 163
L G + V +H Y A F+NDIAL++L + +S+I
Sbjct: 211 ALDIRMGTLKRLSPHYTQAW----SEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNIT 266
Query: 164 PICMPKDDDDF---TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHA 220
PIC+P+ + + T + T SGWG G + L V +P++++ C ++ +
Sbjct: 267 PICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYP 325
Query: 221 KTII-NSFLCAGYANGQRDSCEGDSGGPLMIE-REDGHWVLAGTVSHG-IKCAAPYLPGV 277
+ + + LCAG +G +DSC GDSGG L+ E W + G VS G + C GV
Sbjct: 326 RGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGV 385
Query: 278 YMRTTYYKPWLQTIT 292
Y + Y PW++ I
Sbjct: 386 YTKVINYIPWIENII 400
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 216 bits (552), Expect = 4e-70
Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 10/192 (5%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFE--NDIALLELETPIAYDSHI 162
V GEYD S +++ I N + VH +++ NDIAL++L +
Sbjct: 50 TYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKV 109
Query: 163 VPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
+P D +SGWGRL GG +P LQ+ +P ++ C +
Sbjct: 110 QLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGI--- 166
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVS--HGIKCAAPYLPGVYM 279
T+ + +CAG R C GDSGGPL DG W + G S C P V+
Sbjct: 167 TVKKTMVCAGG--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFT 224
Query: 280 RTTYYKPWLQTI 291
R + + W+
Sbjct: 225 RVSAFIDWIDET 236
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 220 bits (563), Expect = 1e-69
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-TFENDIALLELETPIAYDSHIV 163
+L+ G++ + E + ++ +H +Y+ + DIAL++L+ P+A+ +I
Sbjct: 223 DLLVRIGKHSRT-RYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 281
Query: 164 PICMPKDDDDF----TGRVATVSGWGRLK------YGGGVPSVLQEVQVPVIENNVCQEM 213
P+C+P + G V+GWG LK G G PSVLQ V +P++E VC++
Sbjct: 282 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS 341
Query: 214 FQTAGHAKTIINSFLCAGYA---NGQRDSCEGDSGGPLMIERE-DGHWVLAGTVSHGIKC 269
+ I ++ CAGY + D+CEGDSGGP +++ + W G VS G C
Sbjct: 342 TR-----IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGC 396
Query: 270 AAPYLPGVYMRTTYYKPWLQTIT 292
G Y K W+Q +
Sbjct: 397 DRDGKYGFYTHVFRLKKWIQKVI 419
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 213 bits (544), Expect = 3e-69
Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 17/189 (8%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
+ G + I+ ++ V VH Y ND+A+L+L T I +I
Sbjct: 49 SGFQIRAGSLSRTSG-----GITSSLSSVRVHPSYS--GNNNDLAILKLSTSIPSGGNIG 101
Query: 164 PICMPKDDDDF-TGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQEMFQTAGHAK 221
+ D G ATV+GWG GG P L +V VP++ C+ + T+
Sbjct: 102 YARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSA--- 158
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRT 281
I N CAG ++G +DSC+GDSGGP++ D L G VS G CA P GVY
Sbjct: 159 -ITNQMFCAGVSSGGKDSCQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYSGVYASV 213
Query: 282 TYYKPWLQT 290
+ ++ T
Sbjct: 214 GALRSFIDT 222
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 211 bits (540), Expect = 2e-68
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
V GE+D E + + + +V + +Y++ T NDI LL+L T ++ + +C+
Sbjct: 66 VVAGEFDQGSSSEKIQKLK--IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCL 123
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHAKTIIN 225
P DDF G +GWG +Y P LQ+ +P++ N C++ + T I +
Sbjct: 124 PSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGT-----KIKD 178
Query: 226 SFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYK 285
+ +CAG SC GDSGGPL+ + ++G W L G VS G + PGVY R T
Sbjct: 179 AMICAG--ASGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALV 235
Query: 286 PWLQTI 291
W+Q
Sbjct: 236 NWVQQT 241
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 211 bits (539), Expect = 3e-68
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 11/194 (5%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDA--ATFENDIALLELETPIAYDSHI 162
V G + +S ++ V +++VH+ +++ + NDIALL+L +P++ I
Sbjct: 52 TYRVVLGRHSLSTNEPGSLAVK--VSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKI 109
Query: 163 VPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
C+P V V+GWGRL+ G P +LQ+ Q+ V++ C +
Sbjct: 110 QLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGS--- 166
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK--CAAPYLPGVYM 279
T+ + +CAG G SC GDSGGPL + +G W + G VS G C + P V+
Sbjct: 167 TVKTNMICAGGD-GIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFT 225
Query: 280 RTTYYKPWLQTITG 293
R + Y W+ ++
Sbjct: 226 RVSNYIDWINSVIA 239
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 210 bits (538), Expect = 3e-68
Identities = 42/190 (22%), Positives = 72/190 (37%), Gaps = 15/190 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV- 163
++ +G + + + + I +Y T +N+ A++E E PI D
Sbjct: 50 DISIHYGSSYRTTKGT------SVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTK 103
Query: 164 PICMPKDDDDF-TGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
I +P D VSGWG + L E V++ C+E ++ K
Sbjct: 104 KIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADK 163
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRT 281
I + CAG + GD+G P + L G S+ + + P V++R
Sbjct: 164 YIYDGVFCAGGEYDETYIGYGDAGDPAVQN-----GTLVGVASYISSMPSEF-PSVFLRV 217
Query: 282 TYYKPWLQTI 291
YY ++ I
Sbjct: 218 GYYVLDIKDI 227
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 209 bits (535), Expect = 7e-68
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
L G +S +V +V++ YD ND+AL+ L PI ++ + P
Sbjct: 51 RLKVHVGTNYLSES-----GDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQP 105
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTII 224
I + +D+D T++GWG + GG P+ LQE+++ V C+ +I
Sbjct: 106 IKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW------RVI 159
Query: 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYY 284
+S +C G +C GDSGGPL+ G VS G CA P VY R + +
Sbjct: 160 DSHICTLTKRG-EGACHGDSGGPLVAN-----GAQIGIVSFGSPCALGE-PDVYTRVSSF 212
Query: 285 KPWLQTIT 292
W+
Sbjct: 213 VSWINANL 220
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 208 bits (531), Expect = 6e-67
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 18/201 (8%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIA----YD 159
+L + G E ++ V + IVH+++D T++NDIALL+L++ +
Sbjct: 56 HHLTVILGRTYRVVPGEEEQKFE--VEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQES 113
Query: 160 SHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGVPS-VLQEVQVPVIENNVCQEMFQTA 217
S + +C+P D +SG+G+ + S L+E V + ++ C
Sbjct: 114 SVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLN 173
Query: 218 GHAKTIINSFLCAGYANG------QRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAA 271
T+ ++ LCAG D+C+GDSGGPL+ DG L G +S G+ C
Sbjct: 174 R---TVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRMTLVGIISWGLGCGQ 229
Query: 272 PYLPGVYMRTTYYKPWLQTIT 292
+PGVY + T Y W++
Sbjct: 230 KDVPGVYTKVTNYLDWIRDNM 250
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 217 bits (553), Expect = 1e-66
Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 13/195 (6%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAY----D 159
D + KR + + V R+I H Y+A T++NDIAL+E++
Sbjct: 370 HRYQIWTTVVDWI-HPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCEL 428
Query: 160 SHIVPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAG 218
+P C+P F VSGWGR K LQ +V +I N C + +
Sbjct: 429 PRSIPACVPWSPYLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKLISN--CSKFY---- 481
Query: 219 HAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVY 278
+ CAG +G D+C+GDSGGPL+ + + G VS G C P PGVY
Sbjct: 482 GNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVY 541
Query: 279 MRTTYYKPWLQTITG 293
+ Y W+ G
Sbjct: 542 TKVANYFDWISYHVG 556
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 208 bits (531), Expect = 2e-66
Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 13/195 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-TFENDIALLELETP----IAYD 159
++ V G++ + + ++ + + I + Y ++D+ L+ L+
Sbjct: 85 SVSVVLGQHFFNRTTDVTQTF--GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRS 142
Query: 160 SHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGVPS-VLQEVQVPVIENNVCQEMFQTA 217
+ PIC+P+ F G ++GWG L S L+E VP++ ++ C
Sbjct: 143 QFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS---SPE 199
Query: 218 GHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGV 277
+ I + LCAGY + + D+C+GDSGGPL E ++G L G +S G C + PGV
Sbjct: 200 VYGADISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGV 258
Query: 278 YMRTTYYKPWLQTIT 292
Y R Y W+
Sbjct: 259 YTRVANYVDWINDRI 273
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 211 bits (538), Expect = 4e-66
Identities = 59/204 (28%), Positives = 89/204 (43%), Gaps = 27/204 (13%)
Query: 106 LVAVFGEYDISGELE----------AKRSISKNVRRVIVHRQYDAATFENDIALLELETP 155
GE+ IS E + A ++ + + ++H +YDA +DIALL+L
Sbjct: 173 YEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRS 232
Query: 156 IAYDSHIVPICMPKDDD----DFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQ 211
+ + HI PIC+P D+ V+GWG G VL + VP+ + C
Sbjct: 233 VPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACS 291
Query: 212 EMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIE-----REDGHWVLAGTVSHG 266
+ ++ + + S LC G + +DSC+GDSGGPL V G VS G
Sbjct: 292 QAYR-----RAVPLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQG 345
Query: 267 -IKCAAPYLPGVYMRTTYYKPWLQ 289
+ C LPG+Y Y W+
Sbjct: 346 VVTCGQISLPGLYTNVGEYVQWIT 369
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 206 bits (526), Expect = 4e-66
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 13/195 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-TFENDIALLELETP----IAYD 159
++ V G++ + + ++ + + I + Y ++D+ L+ L+
Sbjct: 50 SVSVVLGQHFFNRTTDVTQTF--GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRS 107
Query: 160 SHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGVPS-VLQEVQVPVIENNVCQEMFQTA 217
+ PIC+P+ F G ++GWG L S L+E VP++ ++ C
Sbjct: 108 QFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG 167
Query: 218 GHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGV 277
I + LCAGY + + D+C+GDSGGPL E ++G L G +S G C + PGV
Sbjct: 168 A---DISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGV 223
Query: 278 YMRTTYYKPWLQTIT 292
Y R Y W+
Sbjct: 224 YTRVANYVDWINDRI 238
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 203 bits (518), Expect = 5e-65
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 103 LANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHI 162
L + A G +D+ G + K NV +++ + +D+ L++L P D +
Sbjct: 47 LKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFV 100
Query: 163 VPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
I +P +V GWG +L+ + ++ N C + +
Sbjct: 101 STIDLPNYGSTIPEKTSCSVYGWGYTG-LINYDGLLRVAHLYIMGNEKCSQHHRGKV--- 156
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRT 281
T+ S +CAG CEGD GGPL+ E + ++ G + G CA P PG+++R
Sbjct: 157 TLNESEICAGAEKIGSGPCEGDYGGPLVCE-QHKMRMVLGVIVPGRGCAIPNRPGIFVRV 215
Query: 282 TYYKPWLQTI 291
YY W+ I
Sbjct: 216 AYYAKWIHKI 225
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 202 bits (515), Expect = 1e-64
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 14/185 (7%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
G + + V +++ + + LL+LE + + + IC+
Sbjct: 53 VWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICL 106
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
P + G ++GWG K G +VL + VI N C + + S
Sbjct: 107 PPEWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHR-----GRVRES 160
Query: 227 FLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKP 286
+C +CEGD GGPL WVL G + CA P V+ R + +
Sbjct: 161 EMCTEGLLAPVGACEGDYGGPLACF-THNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVD 219
Query: 287 WLQTI 291
W+ +
Sbjct: 220 WIHKV 224
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 201 bits (514), Expect = 2e-64
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 14/194 (7%)
Query: 103 LANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYD-AATFENDIALLELETPIAYDSH 161
+A L V G + + ++ +++ I H +Y END+ALL+L+ +
Sbjct: 47 MAQLRLVLGLHTLDSP-----GLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRT 101
Query: 162 IVPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHA 220
I P+ +P G +++GWG GG + VL+E+ + V++ +C G
Sbjct: 102 IRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG-- 159
Query: 221 KTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYM 279
++ S +C + + C+GDSGGPL+ VLAG +S + C + P V
Sbjct: 160 -SLSPSMVCLAADSKDQAPCKGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVAT 215
Query: 280 RTTYYKPWLQTITG 293
Y W++ +TG
Sbjct: 216 AVAPYVSWIRKVTG 229
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 201 bits (513), Expect = 2e-64
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 12/194 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFE--NDIALLELETPIAYDSHI 162
V GE++++ ++ + V++++VH ++ DIALL L + +S++
Sbjct: 52 TFRVVVGEHNLNQNNGTEQYVG--VQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYV 109
Query: 163 VPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
+P+ ++GWG + G + LQ+ +P ++ +C
Sbjct: 110 QLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGS--- 166
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK--CAAPYLPGVYM 279
T+ NS +CAG G R C+GDSGGPL +G + + G S + C P V+
Sbjct: 167 TVKNSMVCAGGD-GVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFT 224
Query: 280 RTTYYKPWLQTITG 293
R + Y W+ +
Sbjct: 225 RVSAYISWINNVIA 238
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 201 bits (514), Expect = 3e-64
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
+ G + + I V R+ + DIALL+L +P ++P C+
Sbjct: 72 VILGAHQEVNLEPHVQEIE--VSRLFLEPTR------KDIALLKLSSPAVITDKVIPACL 123
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
P + ++GWG + G +L+E Q+PVIEN VC G + ++
Sbjct: 124 PSPNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVIENKVCNRYEFLNG---RVQST 179
Query: 227 FLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKP 286
LCAG+ G DSC+GD+GGPL+ E ++L G S G+ CA P PGVY+R + +
Sbjct: 180 ELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVT 238
Query: 287 WLQTI 291
W++ +
Sbjct: 239 WIEGV 243
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 202 bits (516), Expect = 3e-64
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATF--ENDIALLELETP----IAY 158
+ + G ++ + + V +I+H+ Y A T NDIALL++ +
Sbjct: 79 DYIVYLGRSRLNSNTQGEMKFE--VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 136
Query: 159 DSHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQEMFQT 216
I IC+P +D G ++G+G+ + P L+ V +I + CQ+
Sbjct: 137 SRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 196
Query: 217 AGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPG 276
+ LCA + DSC+GDSGGPL+ G L G VS G CA PG
Sbjct: 197 GS---EVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCALKDKPG 252
Query: 277 VYMRTTYYKPWLQTIT 292
VY R +++ PW+++ T
Sbjct: 253 VYTRVSHFLPWIRSHT 268
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 201 bits (513), Expect = 3e-64
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 14/196 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATF--ENDIALLELETP----IAY 158
+ + G ++ + + V +I+H+ Y A T NDIALL++ +
Sbjct: 56 DYIVYLGRSRLNSNTQGEMKFE--VENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 159 DSHIVPICMPKDDDDF-TGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQEMFQT 216
I I +P +D G ++G+G+ + P L+ V +I + CQ+
Sbjct: 114 SRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY 173
Query: 217 AGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPG 276
+ LCA + DSC+GDSGGPL+ G L G VS G CA PG
Sbjct: 174 GS---EVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGRGCALKDKPG 229
Query: 277 VYMRTTYYKPWLQTIT 292
VY R +++ PW+++ T
Sbjct: 230 VYTRVSHFLPWIRSHT 245
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 202 bits (516), Expect = 1e-63
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 22/204 (10%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-------TFENDIALLELETPIA 157
G + AK S V +H + F+NDIAL+ L+ P+
Sbjct: 127 EPTMYVGSTSVQTSRLAK-SKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVK 185
Query: 158 YDSHIVPICMPKDDDDF---TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMF 214
+ PIC+P D+ G + +SGWGR + L+ ++PV C+E+
Sbjct: 186 MGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTE-KRDRAVRLKAARLPVAPLRKCKEVK 244
Query: 215 QTAGHAK----TIINSFLCAGYANGQRDSCEGDSGGPLMIER--EDGHWVLAGTVSHGIK 268
A + +CAG G DSC+GDSGG ++ + + AG VS G +
Sbjct: 245 VEKPTADAEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQ 303
Query: 269 CAAPYLPGVYMRTTYYKPWLQTIT 292
C G+Y R Y W+
Sbjct: 304 CG---TYGLYTRVKNYVDWIMKTM 324
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 198 bits (507), Expect = 2e-63
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 13/192 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFE--NDIALLELETPIAYDSHI 162
V GE++++ ++ ++ V V +H +++ DIALL L T + +S +
Sbjct: 52 TWRVVLGEHNLNTNEGKEQIMT--VNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAV 109
Query: 163 VPICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
+P + ++GWG+ GG + L++ +P +++ C
Sbjct: 110 QLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGS--- 166
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVS--HGIKCAAPYLPGVYM 279
T+ + +CAG G C GDSGGPL + +G + + G S C A P V+
Sbjct: 167 TVKTTMVCAG--GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFT 223
Query: 280 RTTYYKPWLQTI 291
R + Y W+ I
Sbjct: 224 RVSAYISWMNGI 235
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 198 bits (506), Expect = 2e-63
Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 18/190 (9%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV- 163
+V + ++ + + Y T ENDIA+LEL P+ D
Sbjct: 52 TIVIQYESTNLWEDPGKSDP----YVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSK 107
Query: 164 PICMPKDDDDF-TGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
P +P + TG VSG+G + L+ Q+ V++ + C+ +
Sbjct: 108 PAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGP----IF 163
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
+ CA GD+G P + + L G ++ K P V+ +
Sbjct: 164 LSLQVFCAQK--VGVSLESGDAGDPTVQQ-----DTLVGVAAYFPKRPEGA-PEVFTKVG 215
Query: 283 YYKPWLQTIT 292
Y W+Q I
Sbjct: 216 SYVSWIQDII 225
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 197 bits (503), Expect = 9e-63
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 10/189 (5%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ V G + +S +K+++ +++ I + + NDI L++L+T + H+
Sbjct: 53 SPTVVLGAHSLSKNEASKQTLE--IKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKM 110
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPS-VLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ + +G V+GWG PS L+EV V V+ +C G I
Sbjct: 111 LHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGD-PFI 169
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMR-TT 282
+CAG A GQ+DSC+GD+GGPL+ + V VS G +C PG+Y T
Sbjct: 170 TKDMVCAGDAKGQKDSCKGDAGGPLICK-----GVFHAIVSGGHECGVATKPGIYTLLTK 224
Query: 283 YYKPWLQTI 291
Y+ W+++
Sbjct: 225 KYQTWIKSN 233
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 195 bits (498), Expect = 4e-62
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 14/188 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
G+ + E + V VI H ++ T++ DIA+L L+TPI + ++ P
Sbjct: 49 RFKVRVGDRNTEQEEGGEAVH--EVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAP 106
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+P TG +SGWG G P LQ + PV+ C+ + I
Sbjct: 107 ASLP-TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS-----YPGKI 160
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
++ C G+ G +DSC+GDSGGP++ L G VS G CA PGVY +
Sbjct: 161 TSNMFCVGFLEGGKDSCQGDSGGPVVCN-----GQLQGVVSWGDGCAQKNKPGVYTKVYN 215
Query: 284 YKPWLQTI 291
Y W++
Sbjct: 216 YVKWIKNT 223
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 193 bits (494), Expect = 1e-61
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ GE++I +++ I + RVI H Y + +NDI L++L P ++++ P
Sbjct: 45 RVEVRLGEHNIKVTEGSEQFI--SSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTII 224
+ +P G + TVSGWG + LQ + +P++ + C + I
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-----YPGMIT 156
Query: 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYY 284
N+ CAGY G +DSC+GDSGGP++ L G VS G CA P PGVY + +
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVCN-----GELQGVVSWGYGCAEPGNPGVYAKVCIF 211
Query: 285 KPWLQTI 291
WL +
Sbjct: 212 NDWLTST 218
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 193 bits (494), Expect = 2e-61
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
N G + + + ++ DI L+ L++P+ HI P
Sbjct: 48 NFRIKLGMHSKK-VPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAP 106
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+P G V + GWGR+ G P V V + ++E +C+ +
Sbjct: 107 FSLPSSPPSV-GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYP--EFELPA 163
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGI-KCAAPYLPGVYMRTT 282
+ LCAG G +D+C+GDSGGPL+ G S G CA P+ P Y +
Sbjct: 164 TSRTLCAGILEGGKDTCKGDSGGPLICN-----GQFQGIASWGDDPCAQPHKPAAYTKVF 218
Query: 283 YYKPWLQTI 291
+ W++ I
Sbjct: 219 DHLDWIENI 227
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 194 bits (496), Expect = 3e-61
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 16/169 (9%)
Query: 128 NVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDDD----FTGRVATVSG 183
+ V VH +YDA END++LLELE PI +P+C P+ D +SG
Sbjct: 119 KITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSG 178
Query: 184 WGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGD 243
W R G + + L V ++E C ++ T+ C +
Sbjct: 179 WARN--GTDLGNSLTTRPVTLVEGEECGQVLN-----VTVTTRTYCER---SSVAAMHWM 228
Query: 244 SGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTIT 292
G + E G W L G + + + + Y W + I
Sbjct: 229 DGSVVTRE-HRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 275
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 192 bits (491), Expect = 4e-61
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 13/188 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
N+ G + + I + + DI L+ L P+ Y +HI P
Sbjct: 48 NIRIKLGMHSKN-IRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAP 106
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTII 224
+ +P G + GWG++ P V + ++++ C+ ++
Sbjct: 107 VSLPSRSRGV-GSRCRIMGWGKIS-TTTYPDVPHCTNIFIVKHKWCEPLY----PWVPAD 160
Query: 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTTY 283
+ LCAG G RD+C GDSGGPL+ + G V+ G + C P VY +
Sbjct: 161 SRTLCAGILKGGRDTCHGDSGGPLICN-----GEMHGIVAGGSEPCGQHLKPAVYTKVFD 215
Query: 284 YKPWLQTI 291
Y W+Q+I
Sbjct: 216 YNNWIQSI 223
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 192 bits (490), Expect = 5e-61
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 17/192 (8%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ V G ++I + ++ VH Y++ NDIA++ L P+ + I
Sbjct: 48 FVDVVLGAHNIRED--EATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIAT 105
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGG-GVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ +P D G V T +GWG G+ VL++V VP++ N C ++ +
Sbjct: 106 VGLPS-TDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG------IV 158
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTT 282
+ +C G + +C GDSGGPL + + G S G P + R T
Sbjct: 159 TDGNICIDSTGG-KGTCNGDSGGPLN-----YNGLTYGITSFGAAAGCEAGYPDAFTRVT 212
Query: 283 YYKPWLQTITGV 294
Y+ W+QT TG+
Sbjct: 213 YFLDWIQTQTGI 224
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 191 bits (488), Expect = 1e-60
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ + G + +S +KR V R + H T ++D+ LL+L + P
Sbjct: 50 KVQVLLGAHSLSQPEPSKRLYD--VLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP 107
Query: 165 ICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ + D D G + V+GWG + + G P LQ V +PV++ C G I
Sbjct: 108 LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG---AI 164
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTT 282
+CA + +RDSC+GD+GGPL+ VL G V+ G + C PG+Y R
Sbjct: 165 TERLMCAE--SNRRDSCKGDAGGPLVCG-----GVLEGVVTSGSRVCGNRKKPGIYTRVA 217
Query: 283 YYKPWLQTI 291
Y W+ ++
Sbjct: 218 SYAAWIDSV 226
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 190 bits (485), Expect = 3e-60
Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 22/189 (11%)
Query: 104 ANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIV 163
V G YD+ R + YD ND+ LL+L+ S +
Sbjct: 49 GVSTVVLGAYDLRRRERQSRQTF--SISSMSENGYDPQQNLNDLMLLQLDREANLTSSVT 106
Query: 164 PICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKT 222
+ +P + G V+GWG + GG + + V V V + C+
Sbjct: 107 ILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP---------- 156
Query: 223 IINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTT 282
+ +C G + C GD G PL+ E + G S + P + R
Sbjct: 157 ---NNVCTGVLTRRGGICNGDGGTPLVCE-----GLAHGVASFSLGPCGRG-PDFFTRVA 207
Query: 283 YYKPWLQTI 291
++ W+ +
Sbjct: 208 LFRDWIDGV 216
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 190 bits (485), Expect = 3e-60
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
++ G ++I + ++ I V+R I H Y+ F NDI LL+LE + P
Sbjct: 49 SINVTLGAHNIKEQEPTQQFIP--VKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQP 106
Query: 165 ICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ +P + G+ +V+GWG+ G LQEV++ V E+ C+
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL----RHYYD 162
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
LC G ++ S +GDSGGPL+ V G VS+G P P + +
Sbjct: 163 STIELCVGDPEIKKTSFKGDSGGPLVCN-----KVAQGIVSYGRNNGMP--PRACTKVSS 215
Query: 284 YKPWLQTI 291
+ W++
Sbjct: 216 FVHWIKKT 223
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 190 bits (484), Expect = 4e-60
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ GE +I+ ++ I + + IVH Y++ T NDI L++L++ + +S +
Sbjct: 45 GIQVRLGEDNINVVEGNEQFI--SASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
I +P G +SGWG K G P VL+ ++ P++ ++ C+ + I
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA-----YPGQI 156
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
++ CAGY G +DSC+GDSGGP++ L G VS G CA PGVY +
Sbjct: 157 TSNMFCAGYLEGGKDSCQGDSGGPVVCS-----GKLQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 284 YKPWLQTI 291
Y W++
Sbjct: 212 YVSWIKQT 219
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 191 bits (487), Expect = 2e-59
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 16/169 (9%)
Query: 128 NVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDDD----FTGRVATVSG 183
+ V VH +YDA END++LLELE PI +P+C P+ D +SG
Sbjct: 160 KITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSG 219
Query: 184 WGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGD 243
W R G + + L V ++E C ++ T+ C +
Sbjct: 220 WARN--GTDLGNSLTTRPVTLVEGEECGQVLNV-----TVTTRTYCER---SSVAAMHWM 269
Query: 244 SGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTIT 292
G + E G W L G + + + + Y W + I
Sbjct: 270 DGSVVTRE-HRGSWFLTGVLG-SQPVGGQAHMVLVTKVSRYSLWFKQIM 316
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 188 bits (480), Expect = 2e-59
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 17/192 (8%)
Query: 102 FLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSH 161
+ G + + + H Y T ND+ L++L + S
Sbjct: 43 KMNEYTVHLGSDTLGDRRAQRIK----ASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSM 98
Query: 162 IVPICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHA 220
+ + +P + G TVSGWG PS L V V +I C ++ +
Sbjct: 99 VKKVRLPSRCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV-----YK 152
Query: 221 KTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHG-IKCAAPYLPGVYM 279
+ NS LCAG + ++++C GDSGGPL+ L G VS G C P PGVY
Sbjct: 153 DLLENSMLCAGIPDSKKNACNGDSGGPLVCR-----GTLQGLVSWGTFPCGQPNDPGVYT 207
Query: 280 RTTYYKPWLQTI 291
+ + W+
Sbjct: 208 QVCKFTKWINDT 219
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 188 bits (480), Expect = 2e-59
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
N+ G +++ L + + ++ DI L+ L P+ +HI P
Sbjct: 45 NMRIYLGMHNLK-VLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAP 103
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ +P + G V + GWG + +P V + +++ VCQ ++ +
Sbjct: 104 LSLPSNPPSV-GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYK------GL 156
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTT 282
+ LCAG G +D+C+GDSGGPL+ G +S G CA P PG+Y +
Sbjct: 157 AATTLCAGILEGGKDTCKGDSGGPLICN-----GQFQGILSVGGNPCAQPRKPGIYTKVF 211
Query: 283 YYKPWLQTI 291
Y W+Q+I
Sbjct: 212 DYTDWIQSI 220
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 187 bits (477), Expect = 5e-59
Identities = 50/189 (26%), Positives = 77/189 (40%), Gaps = 13/189 (6%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
N G + L + I + + + DI L++L++ ++ HIVP
Sbjct: 46 NFQMKLGVHSKK-VLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVP 104
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ +P G V + GWG + P V + ++++ VCQ +
Sbjct: 105 LSLPSSPPSV-GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY----PELLT 159
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTT 282
LCAG G +D+C GDSGGPL+ G VS G C PGVY +
Sbjct: 160 EYRTLCAGILEGGKDTCGGDSGGPLICN-----GQFQGIVSFGAHPCGQGLKPGVYTKVF 214
Query: 283 YYKPWLQTI 291
Y W+Q+I
Sbjct: 215 DYNHWIQSI 223
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 187 bits (476), Expect = 8e-59
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
++V G N R+I H ++ T+ ND+AL+++ + Y +I P
Sbjct: 52 SVVVYLGSAVQYEG-----EAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQP 105
Query: 165 ICMPKDDD---DFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAK 221
I +P ++ F ATVSGWG+ +LQ VI+N+ C + +
Sbjct: 106 IRLPSGEELNNKFENIWATVSGWGQSNTD---TVILQYTYNLVIDNDRCAQEYPPG---- 158
Query: 222 TIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVS--HGIKCAAPYLPGVYM 279
I+ S +C ++G + C GDSGGP ++ +L G VS G C + P +
Sbjct: 159 IIVESTICGDTSDG-KSPCFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESGK-PVGFS 213
Query: 280 RTTYYKPWLQTITGVQ 295
R T Y W+Q TG++
Sbjct: 214 RVTSYMDWIQQNTGIK 229
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 186 bits (476), Expect = 9e-59
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 12/187 (6%)
Query: 109 VFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMP 168
+ G + I+ E K+ + V++ + YD AT E D+ LL+L + ++ + +P
Sbjct: 51 ILGAHSITREEPTKQIML--VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLP 108
Query: 169 KDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSF 227
K DD G + V+GWGR L+EV++ +I+ VC + I +
Sbjct: 109 KKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY-NFNPVIGMNM 167
Query: 228 LCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK--CAAPYLPGVYMR-TTYY 284
+CAG G RDSC GDSG PL+ E V G S G++ C P PGVY+ + +
Sbjct: 168 VCAGSLRGGRDSCNGDSGSPLLCE-----GVFRGVTSFGLENKCGDPRGPGVYILLSKKH 222
Query: 285 KPWLQTI 291
W+
Sbjct: 223 LNWIIMT 229
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 185 bits (472), Expect = 3e-58
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 111 GEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKD 170
G ++I ++ I VRR I H Y+ T NDI LL+L + PI +P+
Sbjct: 55 GAHNIMERERTQQVIP--VRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRS 112
Query: 171 DDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLC 229
+ G + +V+GWGRL LQEV + V C F+ I + +C
Sbjct: 113 LAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFK-----NYIPFTQIC 167
Query: 230 AGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQ 289
AG + +++S GDSGGPL+ V G VS+G P VY R + + W+
Sbjct: 168 AGDPSKRKNSFSGDSGGPLVCN-----GVAQGIVSYGRNDGTT--PDVYTRISSFLSWIH 220
Query: 290 TI 291
+
Sbjct: 221 ST 222
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 184 bits (470), Expect = 6e-58
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
N+ G ++I ++ I+ RR I H QY+ T +NDI LL+L + + ++ P
Sbjct: 49 NINVTLGAHNIQRRENTQQHIT--ARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 106
Query: 165 ICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ +P+ + G + TV+GWGR+ G L+EVQ+ V + C +F +
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGS-----YD 160
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
+C G ++ + +GDSGGPL+ V G VS+G P P V+ R +
Sbjct: 161 PRRQICVGDRRERKAAFKGDSGGPLLCN-----NVAHGIVSYGKSSGVP--PEVFTRVSS 213
Query: 284 YKPWLQTI 291
+ PW++T
Sbjct: 214 FLPWIRTT 221
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 182 bits (465), Expect = 3e-57
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 14/188 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ G + + + E S + H +Y+ ND+ L++L+ ++ I
Sbjct: 46 SYTIGLGLHSLEADQEPG-SQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRS 104
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTII 224
I + G VSGWG L G +P+VLQ V V V+ VC +++
Sbjct: 105 ISIASQCPT-AGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKLYD-----PLYH 157
Query: 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGI-KCAAPYLPGVYMRTTY 283
S CAG Q+DSC GDSGGPL+ L G VS G C +PGVY
Sbjct: 158 PSMFCAGGGQDQKDSCNGDSGGPLICN-----GYLQGLVSFGKAPCGQVGVPGVYTNLCK 212
Query: 284 YKPWLQTI 291
+ W++
Sbjct: 213 FTEWIEKT 220
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 182 bits (464), Expect = 4e-57
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 109 VFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMP 168
+ G +D+ ++ I V + I+H Y++ +DI LL+LE + + + +P
Sbjct: 54 ILGAHDVRKRESTQQKIK--VEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLP 111
Query: 169 KDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSF 227
D G + +GWG+ L+EV++ +++ C + +
Sbjct: 112 SPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD------YRYYEYKFQ 165
Query: 228 LCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPW 287
+C G R + GDSGGPL+ V G VS+G A P P ++ R + Y PW
Sbjct: 166 VCVGSPTTLRAAFMGDSGGPLLCA-----GVAHGIVSYGHPDAKP--PAIFTRVSTYVPW 218
Query: 288 LQTI 291
+ +
Sbjct: 219 INAV 222
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 181 bits (463), Expect = 4e-57
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 24/185 (12%)
Query: 109 VFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMP 168
V G +++S ++ + V+R I YD NDI +L+L ++++ +P
Sbjct: 54 VLGAHNLSRREPTRQVFA--VQR-IFENGYDPVNLLNDIVILQLNGSATINANVQVAQLP 110
Query: 169 KDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSF 227
G GWG L G+ SVLQE+ V V+ ++C+ S
Sbjct: 111 AQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCR-------------RSN 156
Query: 228 LCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTTYYKP 286
+C Q C GDSG PL+ ++ G S CA+ P + +
Sbjct: 157 VCTLVRGRQAGVCFGDSGSPLVCN-----GLIHGIASFVRGGCASGLYPDAFAPVAQFVN 211
Query: 287 WLQTI 291
W+ +I
Sbjct: 212 WIDSI 216
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 181 bits (463), Expect = 6e-57
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 14/188 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
++ G ++I + E ++ I V + I H Y+ NDI LL+L + P
Sbjct: 50 SMTVTLGAHNIKAKEETQQIIP--VAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRP 107
Query: 165 ICMPKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
+ +P+ + G V+GWG++ G P L EV++ V ++ VC+ F +
Sbjct: 108 LNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF----QSSYN 163
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTY 283
+ +C G + + S E DSGGPL+ + AG VS+G + P V+ R
Sbjct: 164 RANEICVGDSKIKGASFEEDSGGPLVCK-----RAAAGIVSYGQTDGSA--PQVFTRVLS 216
Query: 284 YKPWLQTI 291
+ W++
Sbjct: 217 FVSWIKKT 224
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 181 bits (461), Expect = 1e-56
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
NL G++++ ++ S V R ++H YDAA+ + DI LL L P I P
Sbjct: 46 NLQVFLGKHNLRQRESSQEQSS--VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP 103
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTII 224
+ + D + GWG+ G P +Q + ++ C+ + I
Sbjct: 104 LPLE-RDCSANTTSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHA-----YPGQIT 156
Query: 225 NSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHG-IKCAAPYLPGVYMRTTY 283
+ LCAG +DSC+GDSGGPL+ L G VS G I C + PGVY
Sbjct: 157 QNMLCAGDEKYGKDSCQGDSGGPLVCG-----DHLRGLVSWGNIPCGSKEKPGVYTNVCR 211
Query: 284 YKPWLQTIT 292
Y W+Q
Sbjct: 212 YTNWIQKTI 220
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 180 bits (458), Expect = 4e-56
Identities = 55/189 (29%), Positives = 77/189 (40%), Gaps = 15/189 (7%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
G Y +S E+ + I H Y ND+ L++L I + P
Sbjct: 47 VFRVRLGHYSLSPVYESG-QQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRP 105
Query: 165 ICMPKDDDDFTGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQEMFQTAGHAKTI 223
I + G VSGWG K P VLQ + + V+ C++ + + I
Sbjct: 106 INVSSHCPS-AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYP-----RQI 159
Query: 224 INSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHG-IKCAAPYLPGVYMRTT 282
++ CAG RDSC+GDSGGP++ L G VS G CA P PGVY
Sbjct: 160 DDTMFCAGDK-AGRDSCQGDSGGPVVCN-----GSLQGLVSWGDYPCARPNRPGVYTNLC 213
Query: 283 YYKPWLQTI 291
+ W+Q
Sbjct: 214 KFTKWIQET 222
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 178 bits (454), Expect = 1e-55
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 24/185 (12%)
Query: 109 VFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMP 168
V G +++ + ++ S V +V ++ YDA NDI L++L +P + + + +P
Sbjct: 57 VLGAHNVRTQEPTQQHFS--VAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLP 113
Query: 169 KDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSF 227
+ D G GWGR+ VLQE+ V V+
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHN-------------- 159
Query: 228 LCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAAPYLPGVYMRTTYYKP 286
+C + C GDSGGPL+ + ++ G S I CA P + R Y
Sbjct: 160 ICTFVPRRKAGICFGDSGGPLICD-----GIIQGIDSFVIWGCATRLFPDFFTRVALYVD 214
Query: 287 WLQTI 291
W+++
Sbjct: 215 WIRST 219
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 178 bits (453), Expect = 3e-55
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 26/200 (13%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAAT-----------FENDIALLELE 153
G+ + + + + V + I H ++ + + ND+ LL L
Sbjct: 49 KYQVWLGKNNFLEDEPSDQHRL--VSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLS 106
Query: 154 TPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQE 212
P + PI +P ++ G SGWG P LQ V + ++ N C +
Sbjct: 107 KPADITDVVKPITLPTEEPKL-GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK 165
Query: 213 MFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAA 271
+ + ++ LCAG +G +CE DSGGPL+ + +L G S G + C
Sbjct: 166 AHEM-----KVTDAMLCAGEMDGGSYTCEHDSGGPLICD-----GILQGITSWGPEPCGE 215
Query: 272 PYLPGVYMRTTYYKPWLQTI 291
P P VY + + W++
Sbjct: 216 PTEPSVYTKLIKFSSWIRET 235
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 177 bits (452), Expect = 3e-55
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)
Query: 111 GEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKD 170
G ++I+ E + + + V + H +Y+ +T +DI LL+L+ + + + P
Sbjct: 56 GAHNITEEEDTWQKLE--VIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQ 113
Query: 171 DDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLC 229
+ GR+ V+GWGR LQEV++ +++ C N LC
Sbjct: 114 FNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRD------FDHNLQLC 167
Query: 230 AGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQ 289
G + + +GDSGGPL+ V G VS+G A P P V+ R ++Y+PW+
Sbjct: 168 VGNPRKTKSAFKGDSGGPLLCA-----GVAQGIVSYGRSDAKP--PAVFTRISHYRPWIN 220
Query: 290 TI 291
I
Sbjct: 221 QI 222
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 175 bits (447), Expect = 2e-54
Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 26/203 (12%)
Query: 102 FLANLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAAT-----------FENDIALL 150
++ G+ + E + + V + H ++ + F +D+ LL
Sbjct: 43 YVDQYEVWLGKNKLFQEEPSAQHRL--VSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLL 100
Query: 151 ELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNV 209
L P + PI +P + G SGWG + P LQ V + ++ N
Sbjct: 101 RLSKPADITDVVKPIALP-TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNEN 159
Query: 210 CQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHG-IK 268
C +++ + + + LCAG G +D+C DSGGPL+ + +L GT S+G +
Sbjct: 160 CAKVYL-----QKVTDVMLCAGEMGGGKDTCRDDSGGPLICD-----GILQGTTSYGPVP 209
Query: 269 CAAPYLPGVYMRTTYYKPWLQTI 291
C P +P +Y + W++
Sbjct: 210 CGKPGVPAIYTNLIKFNSWIKDT 232
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 174 bits (444), Expect = 5e-54
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 26/200 (13%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFEN-----------DIALLELE 153
V + G + + + + V H YD + +N D+ LL L
Sbjct: 46 KSVILLGRHSLFHPEDTGQVFQ--VSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLS 103
Query: 154 TPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQE 212
P + + +P + G SGWG ++ + P LQ V + VI N+VC +
Sbjct: 104 EPAELTDAVKVMDLPTQEPAL-GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQ 162
Query: 213 MFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK-CAA 271
+ + + LCAG G + +C GDSGGPL+ VL G S G + CA
Sbjct: 163 VHP-----QKVTKFMLCAGRWTGGKSTCSGDSGGPLVCN-----GVLQGITSWGSEPCAL 212
Query: 272 PYLPGVYMRTTYYKPWLQTI 291
P P +Y + +Y+ W++
Sbjct: 213 PERPSLYTKVVHYRKWIKDT 232
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 185 bits (471), Expect = 1e-53
Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 108 AVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICM 167
+ G + + I V R+ + DIALL+L +P ++P C+
Sbjct: 616 VILGAHQEVNLEPHVQEIE--VSRLFLEPTR------KDIALLKLSSPAVITDKVIPACL 667
Query: 168 PKDDDDFT-GRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
P + ++GWG + G +L+E Q+PVIEN VC G + ++
Sbjct: 668 PSPNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVIENKVCNRYEFLNG---RVQST 723
Query: 227 FLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKP 286
LCAG+ G DSC+GDSGGPL+ E ++L G S G+ CA P PGVY+R + +
Sbjct: 724 ELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVT 782
Query: 287 WLQTI 291
W++ +
Sbjct: 783 WIEGV 787
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 173 bits (440), Expect = 2e-53
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 19/192 (9%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAAT---FENDIALLELETPIAYDSH 161
G++ + + ++ I V + I H Y+ + +DI L+ L+
Sbjct: 46 KYSVRLGDHSLQSRDQPEQEIQ--VAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDK 103
Query: 162 IVPICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQEMFQTAGHA 220
+ P+ + G+ +SGWG + P+ L +V + N C+ +
Sbjct: 104 VKPVQLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYP----- 157
Query: 221 KTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGI-KCAAPYLPGVYM 279
I +CAG +NG D+C+GDSGGPL+ + +L G S G C P PGVY
Sbjct: 158 GKITEGMVCAGSSNG-ADTCQGDSGGPLVCD-----GMLQGITSWGSDPCGKPEKPGVYT 211
Query: 280 RTTYYKPWLQTI 291
+ Y W++
Sbjct: 212 KICRYTTWIKKT 223
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 172 bits (439), Expect = 2e-53
Identities = 51/200 (25%), Positives = 78/200 (39%), Gaps = 26/200 (13%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAAT-----------FENDIALLELE 153
N + G ++ + + VR+ H Y ND+ LL L
Sbjct: 44 NYQVLLGRNNLFKDEPFAQRRL--VRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLS 101
Query: 154 TPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGV-PSVLQEVQVPVIENNVCQE 212
P + I +P + G SGWG V LQ V + ++ N C E
Sbjct: 102 EPADITGGVKVIDLPTKEPKV-GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIE 160
Query: 213 MFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGI-KCAA 271
++ + + LCAG G +D+C GDSGGPL+ + VL G S G CA
Sbjct: 161 TYK-----DNVTDVMLCAGEMEGGKDTCAGDSGGPLICD-----GVLQGITSGGATPCAK 210
Query: 272 PYLPGVYMRTTYYKPWLQTI 291
P P +Y + + W++ +
Sbjct: 211 PKTPAIYAKLIKFTSWIKKV 230
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 172 bits (437), Expect = 7e-53
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAAT-----------FENDIALLELE 153
N G +++ + + + V H ++ + + +D+ LL L
Sbjct: 46 NYQLWLGRHNLFDDENTAQFVH--VSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLT 103
Query: 154 TPIA-YDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQ 211
P + + +P ++ + G SGWG ++ P LQ V + ++ N+ C+
Sbjct: 104 EPADTITDAVKVVELPTEEPEV-GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK 162
Query: 212 EMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHG-IKCA 270
+ H + + + LC G+ G +D+C GDSGGPLM + VL G S G + C
Sbjct: 163 KA-----HVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCD-----GVLQGVTSWGYVPCG 212
Query: 271 APYLPGVYMRTTYYKPWLQTI 291
P P V +R Y W++
Sbjct: 213 TPNKPSVAVRVLSYVKWIEDT 233
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 178 bits (452), Expect = 2e-52
Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 45/210 (21%)
Query: 128 NVRRVIVHRQYD---------AATFENDIALLELETPIAYDSHIVPICMPKDDDDF-TGR 177
+ V+ H Y+ ++ D+AL++L+ + Y I PIC+P + R
Sbjct: 282 EIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 341
Query: 178 VATVSGWGRLKYG------------GGVPSVLQEVQVPVIENN---VCQEMFQTAGHAKT 222
+ + + K L +V + + C+ Q A
Sbjct: 342 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDK 401
Query: 223 -------IINSFLCAGYANGQ--RDSCEGDSGGPLMIEREDGHWVLAGTVSHGIK--CAA 271
+ FLC G + ++C GDSGGPL++ + ++ G +S G+ C
Sbjct: 402 VKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKN 460
Query: 272 P--------YLPGVYMRTTYYKPWLQTITG 293
+ ++ PWL+
Sbjct: 461 QKRQKQVPAHARDFHINLFQVLPWLKEKLQ 490
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 168 bits (428), Expect = 1e-51
Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 26/200 (13%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAA-----------TFENDIALLELE 153
+ G +++S + + + V + Q+D + +D+ LL L
Sbjct: 46 DYQIWLGRHNLSKDEDTAQFHQ--VSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLA 103
Query: 154 TPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGG-VPSVLQEVQVPVIENNVCQE 212
P + + +P + G SGWG + LQ V++ + N C
Sbjct: 104 QPARITDAVKILDLPTQEPKL-GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCAR 162
Query: 213 MFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDGHWVLAGTVSHGI-KCAA 271
+ + + LCA + + C GDSGG L+ + V G S G +CA
Sbjct: 163 AYP-----EKMTEFVLCATHRDDSGSICLGDSGGALICD-----GVFQGITSWGYSECAD 212
Query: 272 PYLPGVYMRTTYYKPWLQTI 291
V+ + +K W++
Sbjct: 213 FNDNFVFTKVMPHKKWIKET 232
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 163 bits (414), Expect = 1e-50
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 139 DAATFENDIALLELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGG---VPS 195
D + +D+ LL L++P + + +P + + G SGWG ++ G P
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPD 60
Query: 196 VLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIEREDG 255
+Q VQ+ +++N C + H + S LCAGY G +D+C GDSGGPL+
Sbjct: 61 EIQCVQLTLLQNTFCADA-----HPDKVTESMLCAGYLPGGKDTCMGDSGGPLICNG--- 112
Query: 256 HWVLAGTVSHG-IKCAAPYLPGVYMRTTYYKPWLQTI 291
+ G S G C + P +Y + +Y W+
Sbjct: 113 --MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 170 bits (431), Expect = 2e-49
Identities = 40/236 (16%), Positives = 73/236 (30%), Gaps = 55/236 (23%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYD---------AATFENDIALLELETP 155
G+ E + + ++ +D + +DIALL+L
Sbjct: 274 LWRVNVGDPKSQWGKEFL------IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQK 327
Query: 156 IAYDSHIVPICMPKDDDDFT------GRVATVSGWGRLKYGGGVPSV--LQEVQVPV--- 204
+ +H PIC+P + G L L ++ +
Sbjct: 328 VKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLK 387
Query: 205 --IENNVCQEMFQTA--------GHAKTIINSFLCAGYANGQRDSCEGDSGGPLMIERED 254
+E C E+ + + + FLC+G C+G+SGG + +ER
Sbjct: 388 MGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGESGGAVFLER-R 445
Query: 255 GHWVLAGTVSHGI-----------------KCAAPYLPGVYMRTTYYKPWLQTITG 293
+ G VS G+ + P ++ +PWL+ G
Sbjct: 446 FRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG 501
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 167 bits (424), Expect = 3e-47
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 45/209 (21%)
Query: 129 VRRVIVHRQYD---------AATFENDIALLELETPIAYDSHIVPICMPKDDDDF-TGRV 178
+ V+ H Y+ ++ D+AL++L+ + Y I PIC+P + R+
Sbjct: 525 IEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRL 584
Query: 179 AT-----VSGWGRLKYGGG-------VPSVLQEVQVPVIEN---NVCQEMFQTAGHAKT- 222
L L +V + C+ Q A
Sbjct: 585 PPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKV 644
Query: 223 ------IINSFLCAGYANGQ--RDSCEGDSGGPLMIEREDGHWVLAGTVSHGIKCA---- 270
+ FLC G + ++C GDSGGPL++ + ++ G +S G+
Sbjct: 645 KDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQ 703
Query: 271 ------APYLPGVYMRTTYYKPWLQTITG 293
+ ++ PWL+
Sbjct: 704 KRQKQVPAHARDFHINLFQVLPWLKEKLQ 732
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 125 bits (316), Expect = 1e-36
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 191 GGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMI 250
P LQ+ +P++ N C++ + T I ++ +CAG SC GDSGGPL+
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGT-----KIKDAMICAGA--SGVSSCMGDSGGPLVC 53
Query: 251 EREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTI 291
+ ++G W L G VS G + PGVY R T W+Q
Sbjct: 54 K-KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 92.6 bits (231), Expect = 1e-23
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 105 NLVAVFGEYDISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPIAYDSHIVP 164
+ V V GE+D E + + + +V + +Y++ T NDI LL+L T ++ +
Sbjct: 48 SDVVVAGEFDQGSSSEKIQKLK--IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSA 105
Query: 165 ICMPKDDDDFT-GRVATVSGWGRLKY 189
+C+P DDF G +GWG +Y
Sbjct: 106 VCLPSASDDFAAGTTCVTTGWGLTRY 131
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 60.0 bits (145), Expect = 7e-11
Identities = 23/165 (13%), Positives = 48/165 (29%), Gaps = 31/165 (18%)
Query: 128 NVRRVIVHRQY-DAATFENDIALLELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGR 186
N+ V Y + + D A+++ +T I I + + TG +SG+
Sbjct: 78 NMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSI---RQVTNLTGTTIKISGYPG 134
Query: 187 LKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGG 246
K E+ V + + D+ G+SG
Sbjct: 135 DKMRSTGKVSQWEMSGSVTREDTNLAYYTI---------------------DTFSGNSGS 173
Query: 247 PLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYMRTTYYKPWLQTI 291
++ D + + G + G G + + ++
Sbjct: 174 AML----DQNQQIVGVHNAGYSN-GTINGGPKATAAFVE-FINYA 212
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 46.6 bits (110), Expect = 2e-06
Identities = 26/155 (16%), Positives = 41/155 (26%), Gaps = 28/155 (18%)
Query: 128 NVRRVIVHRQY-DAATFENDIALLELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGR 186
++ ++ + FE+D A LET T V
Sbjct: 72 AAEELVTSAEWANRGDFEHDYAFAVLETKGG-----------------TTVQQQVGTASP 114
Query: 187 LKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCE---GD 243
+ + P QE+ G + ++ Q C G
Sbjct: 115 IAFNQPRGQYYSAYGYPAAAPFNGQELHSCHG------TATNDPMGSSTQGIPCNMTGGS 168
Query: 244 SGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVY 278
SGGP + G T S+G + G Y
Sbjct: 169 SGGPWFLGNGTG-GAQNSTNSYGYTFLPNVMFGPY 202
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.8 bits (105), Expect = 8e-06
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 2 IRSRRRKEKKK-KKKKKKKKKKKKKKKKKKKTEI------QQMELEKLQQRHREEIEALC 54
IR R +++K+ ++ K +++ ++K K ++ Q ++EK + +R +A
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 55 RN 56
+
Sbjct: 147 QQ 148
Score = 34.4 bits (78), Expect = 0.021
Identities = 10/51 (19%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 3 RSRRRKEK-KKKKKKKKKKKKKKKKKKKKKTEIQQMELEK--LQQRHREEI 50
S+ +++ ++K KK ++ +++ ++ +K +I +K QQ + I
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 40.6 bits (94), Expect = 3e-04
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME--LEKLQQRHREEIEALCRNIGI 59
I RRR+E +KK+K +K K + K + E + + + +E ++
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMK 74
Query: 60 GCALPPPPPTV 70
G P
Sbjct: 75 GGFYVSPEAKP 85
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 39.4 bits (91), Expect = 6e-04
Identities = 5/54 (9%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
++ + ++K ++ ++ +K K+K+ +++ Q+ + + +
Sbjct: 13 LKKSKAQQKTAEQVAAERAARKAANKEKRAIILER--NAAYQKEYETAERNIIQ 64
Score = 33.6 bits (76), Expect = 0.054
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ R +K K+K+ ++ +K+ E + + + ++
Sbjct: 26 VAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRD 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 7e-04
Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 31/165 (18%)
Query: 24 KKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPP----PPPTVSRHTLYTLQ 79
K K T I + L L+ E + + + PP P +S L
Sbjct: 348 KHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSV---FPPSAHIPTILLS---LIWFD 398
Query: 80 FPQQDSMMTNFDMFTINLSKIGFLANLVAVFGEYDISGELEAKRSISKNVRRVIV----- 134
+ D M+ + +L + + +++ I EL+ K + R IV
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 135 HRQYDAATFENDIALLELE----TPIAYDSHIVPICMPKDDDDFT 175
+ +D +D+ L+ + I + H+ I P+ F
Sbjct: 456 PKTFD----SDDLIPPYLDQYFYSHIGH--HLKNIEHPERMTLFR 494
Score = 37.9 bits (87), Expect = 0.003
Identities = 46/300 (15%), Positives = 85/300 (28%), Gaps = 96/300 (32%)
Query: 27 KKKKKTEIQQMELEKLQQRHREEIEALCRNIGI----GC---ALPPPPPTVSRHTLYTLQ 79
+ + +++Q L +L+ +N+ I G + L
Sbjct: 133 RLQPYLKLRQA-LLELRPA---------KNVLIDGVLGSGKTWV----------ALDVCL 172
Query: 80 FPQQDSMMTNFDMFTINLSKI----GFLANLVAVFGEYDISGELEAKRSISKNV------ 129
+ M +F +F +NL L L + Y I ++ S N+
Sbjct: 173 SYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHS 229
Query: 130 -----RRVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDDDFTGR----VAT 180
RR++ + Y EN LL L + + K + F + T
Sbjct: 230 IQAELRRLLKSKPY-----EN--CLLVLL-----N-----VQNAKAWNAFNLSCKILLTT 272
Query: 181 VSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSC 240
R K V L I + T K+++ +L R
Sbjct: 273 -----RFK---QVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYL------DCRPQD 317
Query: 241 ---EGDSGGPLMIE------RED-GHW-----VLAGTVSHGIKCAAPYLPGVYMRTTYYK 285
E + P + R+ W V ++ I+ + L R + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 39.3 bits (90), Expect = 8e-04
Identities = 26/180 (14%), Positives = 42/180 (23%), Gaps = 36/180 (20%)
Query: 131 RVIVHRQYDAATFENDIALLELETPIAYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYG 190
+ A +D LLEL ++ +GW R
Sbjct: 98 QTQSGSTVKATYATSDFTLLELNNAANPAFNLFW-----------------AGWDRRDQN 140
Query: 191 GGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCAGYANGQRDSCEGDSGGPLMI 250
+ V + + L + + G SG P+
Sbjct: 141 YPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIY- 199
Query: 251 EREDGHWVLAGTVSHG-IKCAA--PYLPGVYMR-----------TTYYKPWLQTI-TGVQ 295
+ + G + G C+A Y R + WL TG Q
Sbjct: 200 -SPEKRVL--GQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGAAASRLSDWLDPASTGAQ 256
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 38.6 bits (89), Expect = 0.001
Identities = 6/51 (11%), Positives = 21/51 (41%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
++ +K +K K +++K + K++ + +K + + +
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVD 61
Score = 35.5 bits (81), Expect = 0.012
Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE-----IQQMELEKLQQRHRE 48
+ RK K +++K + K++K + K + + E + + ++ +
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 37.2 bits (85), Expect = 0.003
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
RR + K K+ +KK K +K ++K ++ + + R E
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMA 94
Score = 34.5 bits (78), Expect = 0.028
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE-----IQQMELEKLQQRHREEIEALCR 55
+ + ++ +KK K +K ++K +K + +QM +++
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFY 104
Score = 32.9 bits (74), Expect = 0.091
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCA 62
R + K K+ +KK K +K ++K E + ++ +Q +R EI G
Sbjct: 44 RRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNF 103
Query: 63 LPPPPPTV 70
P P +
Sbjct: 104 YVPAEPKL 111
Score = 29.5 bits (65), Expect = 1.1
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
K+++ + K K+ +KK K + +++ EK + H+E + I
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEI 91
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 36.7 bits (85), Expect = 0.007
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ RR E+K ++ K K+K +K++ +K+
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.1 bits (81), Expect = 0.018
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+RR+ ++K ++ K K+K +K++ +K+
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.1 bits (81), Expect = 0.018
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++R+E ++K ++ K K+K +K++ +K
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 33.6 bits (77), Expect = 0.059
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
+ R +EK ++ K K+K +K++ +K+
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.26
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+++++ ++K ++ K K+K +K++ E Q
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 0.33
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
KE +K+++ ++K ++ K K+K + E +
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 28.9 bits (65), Expect = 2.1
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K+ +K+++ ++K ++ K K + ++ LEK
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.009
Identities = 35/213 (16%), Positives = 59/213 (27%), Gaps = 95/213 (44%)
Query: 104 ANLVAVFG------EY-DISGELEAKRSISKNVRRVIVHRQYDAATFENDIALLELETPI 156
A LVA+FG +Y + EL R + Y T+ + L ++
Sbjct: 154 AQLVAIFGGQGNTDDYFE---EL---RDL------------YQ--TYHVLVGDL-IKFSA 192
Query: 157 AYDSHIVPICMPKDDDDFTGRVATVSGWGRLKYGGGVPSV--LQEVQV--PVIENNVCQ- 211
S ++ D + + + W L+ P L + + P+I V Q
Sbjct: 193 ETLSELIRT--TLDAEKVFTQGLNILEW--LENPSNTPDKDYLLSIPISCPLIG--VIQL 246
Query: 212 ---------------EMFQ----TAGHAKTII-----------NSFLCA----------- 230
E+ GH++ ++ SF +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 231 GYANGQR-------------DSCEGDSGGP-LM 249
G DS E + G P M
Sbjct: 307 GVR-CYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Score = 28.5 bits (63), Expect = 3.6
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 23/64 (35%)
Query: 81 PQQDSMMTNFDMFTINLSKIGF------LANLVAVFGE-----------------YDISG 117
P+ + +N+ M IN ++ L +V G+ Y +G
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 118 ELEA 121
+L A
Sbjct: 1858 DLRA 1861
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 35.6 bits (81), Expect = 0.012
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+ ++ ++ K KK K ++KKKK+ K K +Q KL+
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLE 111
Score = 34.4 bits (78), Expect = 0.034
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
++ R + ++KK+ K+ K KK K ++ + +Q K +R R
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 33.6 bits (76), Expect = 0.058
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
R + + + ++KK+ K+ K KK K E ++ + K + R+ +
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMAL 108
Score = 32.1 bits (72), Expect = 0.16
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
R ++KK+ K+ K KK K ++KK + +QR ++EA
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 30.5 bits (68), Expect = 0.57
Identities = 8/63 (12%), Positives = 27/63 (42%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCA 62
++ R + + + ++KK+ K+ K KK + Q+ + ++ + + + + +
Sbjct: 56 QATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Query: 63 LPP 65
Sbjct: 116 FDV 118
Score = 30.5 bits (68), Expect = 0.62
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
I R + + + ++KK+ K+ K K Q
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQ 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 35.9 bits (83), Expect = 0.016
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+++ + + +KK ++ K K +TE EL++ + E E L R I
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046
Score = 34.7 bits (80), Expect = 0.033
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME-----LEKLQQRHREEIEAL 53
R R +++ K + +++ K + E+ Q + +E+ +++ E E L
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Score = 30.5 bits (69), Expect = 0.80
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
E+ K +K+ + + +KK ++ + + E E+L +E+ L
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 34.3 bits (78), Expect = 0.019
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ RK ++++ + K+ KK K+ KK K + +
Sbjct: 96 QKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIV 143
Score = 31.6 bits (71), Expect = 0.17
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
R + + K+ KK K+ KK K T+ +
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPV 146
Score = 31.6 bits (71), Expect = 0.18
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+R +R++ + K+ KK K+ KK + K + ++ A
Sbjct: 100 VRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Score = 31.2 bits (70), Expect = 0.20
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
R K+ KK K+ KK K + ++ K +
Sbjct: 104 QREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVK 147
Score = 29.6 bits (66), Expect = 0.66
Identities = 7/49 (14%), Positives = 20/49 (40%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ R +K + +K ++++ + K+ KK K+ +
Sbjct: 90 IMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAP 138
Score = 28.9 bits (64), Expect = 1.4
Identities = 6/48 (12%), Positives = 23/48 (47%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R+++ + +K ++++ + K+ KK K+ + + + ++
Sbjct: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQ 140
Score = 28.5 bits (63), Expect = 1.8
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+++ K+ KK K K K+K + ++ ++ +
Sbjct: 114 EAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156
Score = 27.3 bits (60), Expect = 3.8
Identities = 8/50 (16%), Positives = 24/50 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ ++ E +K ++++ + K+ KK K+ ++ M K + + +
Sbjct: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKI 142
Score = 26.9 bits (59), Expect = 5.4
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ K ++++ + K+ KK K+ K + +++I
Sbjct: 97 KPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIV 143
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 34.3 bits (78), Expect = 0.020
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ R ++ ++ K++ KK K +KK + + + +K Q +
Sbjct: 99 EKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRG 149
Score = 30.8 bits (69), Expect = 0.30
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
R KE+ KK K +KK KK + K +K +
Sbjct: 111 ALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
Score = 30.0 bits (67), Expect = 0.60
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ R+ K++ KK K +KK KK + K + + + +
Sbjct: 108 REAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 29.6 bits (66), Expect = 0.73
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+R + + KK K +KK KK + K +K + K +
Sbjct: 112 LREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPK 154
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 34.5 bits (78), Expect = 0.021
Identities = 7/50 (14%), Positives = 24/50 (48%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ RR E + +K+K ++ K+ ++++ + ++ ++E +
Sbjct: 127 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD 176
Score = 28.3 bits (62), Expect = 2.2
Identities = 7/51 (13%), Positives = 23/51 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
+I+ +R+ + + +K+K ++ K+ ++ Q + +Q +
Sbjct: 123 VIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 35.3 bits (81), Expect = 0.022
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
E KKKKKKKKK+ ++Q
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
Score = 34.9 bits (80), Expect = 0.026
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
++ KKKKKKKKK+ Q
Sbjct: 84 DDEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
Score = 34.1 bits (78), Expect = 0.052
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
KKKKKKKKK+ K +T+
Sbjct: 89 DGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 31.0 bits (70), Expect = 0.49
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
++ + KKKKKKKKK +
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.9 bits (67), Expect = 0.93
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R E + KKKKKKKK
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 29.1 bits (65), Expect = 2.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 7 RKEKKKKKKKKKKKKKKKKK 26
KKKKKKKKK+ K
Sbjct: 92 GDGATGKKKKKKKKKRGPKV 111
Score = 27.6 bits (61), Expect = 6.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 4 SRRRKEKKKKKKKKKKKKKKK 24
KKKKKKKKK+ K
Sbjct: 91 DGDGATGKKKKKKKKKRGPKV 111
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 34.4 bits (78), Expect = 0.036
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K KK K +K K K
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 34.0 bits (77), Expect = 0.044
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
K+ K KK K +K K K+
Sbjct: 284 TKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 33.3 bits (75), Expect = 0.077
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ + K KK K +K K
Sbjct: 283 YTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 32.9 bits (74), Expect = 0.099
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K K KK K +K K
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 31.0 bits (69), Expect = 0.49
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K K K KK K +K
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
Score = 31.0 bits (69), Expect = 0.49
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ ++ K K K KK K +K
Sbjct: 277 VEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Score = 30.6 bits (68), Expect = 0.51
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
++ K KK K +K K K I
Sbjct: 287 NTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 30.6 bits (68), Expect = 0.66
Identities = 8/34 (23%), Positives = 9/34 (26%), Gaps = 5/34 (14%)
Query: 3 RSRRRKEKKKKKKKKKKKKK-----KKKKKKKKK 31
+K K K K K KK K
Sbjct: 298 SKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 29.8 bits (66), Expect = 1.1
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
S E K+ K K K KK K T
Sbjct: 273 SDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
Score = 29.4 bits (65), Expect = 1.4
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+++ K K K KK K + + +
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 29.4 bits (65), Expect = 1.5
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
++ + K+ K K K KK K Q L K
Sbjct: 270 LKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 34.0 bits (77), Expect = 0.037
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ--QRHREEIEALCRN 56
+ R++ KKK K +KK KK + + +IQ LQ +E +
Sbjct: 132 EYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQ 189
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 32.7 bits (74), Expect = 0.039
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ K KK K +K K KKKK+K+ E
Sbjct: 1 IPPKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 30.1 bits (67), Expect = 0.42
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
S + +K K +K K KKKK+K+K++
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKRKRKES 34
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 34.4 bits (78), Expect = 0.041
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ +++ K +K K KK + E+ + R+E
Sbjct: 350 ASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQE 394
Score = 33.3 bits (75), Expect = 0.076
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ + K K++ K +K K KK ++ K + +
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQ 393
Score = 33.3 bits (75), Expect = 0.082
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
++ + K++ K +K K KK + I + +
Sbjct: 344 AKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 32.9 bits (74), Expect = 0.10
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
++ + K K++ K +K K K Q +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKAN 384
Score = 32.9 bits (74), Expect = 0.11
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++ + +K + K K++ K +K K + Q + + + E I
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
Score = 30.9 bits (69), Expect = 0.42
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K K++ K +K K KK + ++ + +
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQE 394
Score = 30.9 bits (69), Expect = 0.48
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
+ + KK + K K++ K +K ++ + ++ EA+ +
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKA 391
Score = 30.9 bits (69), Expect = 0.54
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
I + K+ + K K++ K +K K + + EE
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEE 386
Score = 30.2 bits (67), Expect = 0.76
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
R K +K K KK + K E + + + +
Sbjct: 355 RQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQ 403
Score = 30.2 bits (67), Expect = 0.79
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ + K + K +K K KK + + E + + +E+ +
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398
Score = 28.6 bits (63), Expect = 3.0
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
RK K KK + K ++ + E + +E E
Sbjct: 361 ANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKEG 408
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 33.3 bits (76), Expect = 0.044
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 23/129 (17%)
Query: 170 DDDDFTGRVATVSGW---GRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
+D+ G V G G + G + V+ + + T + T+
Sbjct: 59 PTNDY-GIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAV 117
Query: 227 FLCAGYANGQRD--------SCEGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVY 278
+ Y +G S GDSGG G L G S C+
Sbjct: 118 NVTVNYGDGPVYNMVRTTACSAGGDSGGAHF----AGSVAL-GIHSGSSGCSGT------ 166
Query: 279 MRTTYYKPW 287
+ ++P
Sbjct: 167 AGSAIHQPV 175
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.4 bits (75), Expect = 0.058
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE----IQQMELEKLQQRHREEIEAL 53
R +RK ++ K +++ ++K KK E Q ++EK + +R +A
Sbjct: 106 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
Score = 32.6 bits (73), Expect = 0.089
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
RK +++++K+ ++ K +++ E + +LE+ QR E++E
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 147
Score = 31.4 bits (70), Expect = 0.26
Identities = 9/48 (18%), Positives = 24/48 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R + K +++ ++K KK ++ + + +Q+E K+ R ++
Sbjct: 111 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Score = 27.6 bits (60), Expect = 4.5
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKK--------KKKKKKKKTEIQQMELEKLQQRHREEI 50
++ K +++ ++K KK ++ +K K + + QQ + I
Sbjct: 113 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 169
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 33.5 bits (76), Expect = 0.063
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+ + +K K KK +K KK +KKK K + +
Sbjct: 63 QKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRN 97
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 32.1 bits (72), Expect = 0.066
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
++ KK KK K +KK KK+KK+
Sbjct: 5 AKSAPAPKKGSKKAVTKTQKKGDKKRKKS 33
Score = 31.3 bits (70), Expect = 0.16
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+S +K KK K +KK KK+KK + E
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.4 bits (65), Expect = 0.69
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
M + KK KK K +KK KK+K
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRK 31
Score = 29.0 bits (64), Expect = 0.87
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKT 32
+K KK K +KK KK+KK +K++
Sbjct: 12 KKGSKKAVTKTQKKGDKKRKKSRKES 37
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 32.8 bits (74), Expect = 0.069
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
R K+KK +KK+ +K + K K + + + K +
Sbjct: 110 AVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 32.4 bits (73), Expect = 0.079
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ ++ ++ K+KK +KK+ +K +K + +
Sbjct: 102 HKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETK 145
Score = 32.4 bits (73), Expect = 0.080
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ +E K+KK +KK+ +K + K + + K ++
Sbjct: 107 AEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Score = 32.4 bits (73), Expect = 0.081
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ + +K + +K ++ K+KK +KK+ Q + K ++
Sbjct: 98 LDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKK 141
Score = 32.1 bits (72), Expect = 0.12
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+ K+KK +KK+ +K + K ++ E +K +Q
Sbjct: 106 EAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQP 150
Score = 30.5 bits (68), Expect = 0.32
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
++ K ++ K+KK +KK+ +K + + + + ++
Sbjct: 104 KAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKK 146
Score = 29.7 bits (66), Expect = 0.61
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
++ KK + +K ++ K+KK +K + K +
Sbjct: 95 RKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKA 138
Score = 29.0 bits (64), Expect = 1.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
RR+ KK + +K ++ K+KK ++ KLQ +
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGK 134
Score = 29.0 bits (64), Expect = 1.3
Identities = 6/42 (14%), Positives = 18/42 (42%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
++ + +K ++ K+KK +KK+ + + +
Sbjct: 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKA 142
Score = 28.2 bits (62), Expect = 2.3
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ R + KK + +K ++ K+KK + + + + +
Sbjct: 92 INRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAK 140
Score = 27.8 bits (61), Expect = 2.9
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
I R+ + KK + +K ++ K+KK E ++ + + + + +A
Sbjct: 92 INRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKA 142
Score = 27.1 bits (59), Expect = 5.2
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+K + +K ++ K+KK +KK ++++ + ++ + E
Sbjct: 99 DASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAE 143
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 33.6 bits (76), Expect = 0.071
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
+ K K K K KK + KKK + +Q+ ++Q REE + +
Sbjct: 492 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIA 541
Score = 30.5 bits (68), Expect = 0.70
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K K K K KK + KKKK KK+ E
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEE 26
Score = 30.1 bits (67), Expect = 0.88
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
K K K K KK + KKKK K E +Q
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQ 27
Score = 30.1 bits (67), Expect = 0.89
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K K K K KK + KKKK + ++ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME----LEKLQQRHREEIEALCRNI 57
+ KK++ ++ K K K + + + +K QR E++ L
Sbjct: 475 TKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQA 531
Score = 29.3 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ + K K KK + KKKK KK++ +
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQK 28
Score = 29.0 bits (64), Expect = 2.2
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 27/88 (30%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQM-----ELEKLQQRHREEIEALCR------- 55
K + + +K+ K++K K K++ +K + ++ + E L R
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPK 195
Query: 56 ---------------NIGIGCALPPPPP 68
N +P PPP
Sbjct: 196 MGMLKRRIMPEDIIINCSKDAKVPSPPP 223
Score = 28.2 bits (62), Expect = 3.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ E +K+ K++K K K++ +K K
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLK 162
Score = 27.4 bits (60), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKK 29
+ K K K KK + KKKK KK+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 32.0 bits (72), Expect = 0.098
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 2 IRSRRRK---EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
++ RK E+K K K+KKK +K +K +K + +Q+ +
Sbjct: 96 LKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
Score = 29.7 bits (66), Expect = 0.66
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+ + KEKKK +K +K +K K + +Q Q+
Sbjct: 108 KLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVA 151
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 33.1 bits (74), Expect = 0.10
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 242 GDSGGPLMI-EREDGHWVLAGTVSHG 266
GD+G L + + + WV+AGTV
Sbjct: 206 GDAGSALFVYDNQKKKWVVAGTVWGI 231
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 30.7 bits (69), Expect = 0.11
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKK----------KKKKKKKKTEIQQMELEKLQQRHREEIE 51
++S+ +K K + K ++++ K K + +T+ + +EL +R ++++E
Sbjct: 1 VKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60
Query: 52 AL 53
L
Sbjct: 61 QL 62
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 32.0 bits (72), Expect = 0.11
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKK 27
+R RR + + KK+ K
Sbjct: 15 LRVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 28.1 bits (62), Expect = 2.0
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R+ + ++ + + KK+ K+
Sbjct: 13 RKLRVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 27.4 bits (60), Expect = 3.4
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R R + + + KK+ K
Sbjct: 12 ARKLRVHRRNNRWAENNYKKRLLGTAFKS 40
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.9 bits (74), Expect = 0.12
Identities = 8/49 (16%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME--LEKLQQRHREEIE 51
R + K+ +K + + K + +K+ E+++M+ + ++Q + + +++
Sbjct: 300 RSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQ 348
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.8 bits (74), Expect = 0.12
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+R KEK+ + K+ +K+ +K + KK + ++ +LE ++ +E+ A
Sbjct: 348 QRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAF 396
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 32.6 bits (74), Expect = 0.13
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++R++ + K KKK K K K+ K
Sbjct: 351 SAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 31.0 bits (70), Expect = 0.44
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ S +RKE + K KKK K K K+
Sbjct: 349 LSSAKRKEPEPKGSTKKKAKTGAAGKFKRG 378
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 31.9 bits (72), Expect = 0.19
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
++K KK+ KKK+ + K +KK + Q + + E+
Sbjct: 253 YEKKPKKEVKKKRWNRPKMSLAQKKDRVAQ-KKASFLRAQERAAES 297
Score = 31.2 bits (70), Expect = 0.32
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+E +KK KK+ KKK+ + K + Q+ +++ Q+ + A
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKK--DRVAQKKASFLRAQ 291
Score = 30.8 bits (69), Expect = 0.50
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 4 SRRRKEKKKKKKKKKKKKK------KKKKKKKKKTEIQQMELE 40
+K KK+ KKK+ + K K + +KK + ++ E
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
Score = 27.3 bits (60), Expect = 6.1
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+ ++ +KK+ + K +KK + +KK + +
Sbjct: 256 KPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQ 291
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 30.4 bits (68), Expect = 0.21
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
K++ K K KK KKK +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWS 28
Score = 29.6 bits (66), Expect = 0.40
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+++ K K KK KKK K ++ ++ Q
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMK----DRAQ 37
Score = 28.8 bits (64), Expect = 0.75
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+++ K K KK KKK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
Score = 28.8 bits (64), Expect = 0.90
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
S+ K KK KKK KK K +
Sbjct: 8 SKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 28.4 bits (63), Expect = 0.95
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+ K KK KKK KK K Q
Sbjct: 9 KAAKAAAALAGGKKSKKKWSKKSMKDRAQHA 39
Score = 28.4 bits (63), Expect = 1.2
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
M ++ + K KK KKK KK
Sbjct: 1 MPPKQQLSKAAKAAAALAGGKKSKKKWSKKS 31
Score = 26.1 bits (57), Expect = 6.7
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
KK KKK KK K + + + Q + +++ +
Sbjct: 16 ALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILK 52
Score = 26.1 bits (57), Expect = 7.1
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ + + KK KKK KK K
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 30.4 bits (68), Expect = 0.21
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKT 32
+K+K K K K+KKKK +
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWS 29
Score = 30.0 bits (67), Expect = 0.32
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
++ K K K K+KKKK K + + EK+
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQK----EKVN 38
Score = 28.4 bits (63), Expect = 1.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K K+KKKK K K+K+K
Sbjct: 8 APPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.4 bits (63), Expect = 1.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
K K K+KKKK K K+K ++
Sbjct: 10 PPSSKPAKSGGGKQKKKKWSKGKQKEKVNNS 40
Score = 28.0 bits (62), Expect = 1.6
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
M + + K K K+KKKK K
Sbjct: 1 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGK 32
Score = 27.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
++ K K K+KKKK K K+K
Sbjct: 7 KAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 25.7 bits (56), Expect = 9.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K K+KKKK K K+K+K + +KL
Sbjct: 17 KSGGGKQKKKKWSKGKQKEKVNNSVLFDKATYDKLLS 53
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 31.8 bits (72), Expect = 0.22
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
M +RR +E + + + K K+ +
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGR 31
Score = 30.7 bits (69), Expect = 0.56
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ R + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.9 bits (67), Expect = 1.0
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ ++ + K K+ +K I
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 29.9 bits (67), Expect = 1.1
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKK 29
R + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.5 bits (66), Expect = 1.5
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKK 28
++R + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 32.0 bits (73), Expect = 0.23
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ +K +KKKKKK K + T + +E +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 27.4 bits (61), Expect = 6.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
+K +KKKKKK K + E
Sbjct: 367 SSASRKTQKKKKKKASKTAENATSGE 392
Score = 27.0 bits (60), Expect = 7.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
K + +K +KKKKKK KT E L++
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAENATSGETLEE 396
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 30.4 bits (68), Expect = 0.24
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
KK K+ +++ K +K +++ E + EE
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEE 98
Score = 26.9 bits (59), Expect = 3.5
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 11 KKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K KK K+ +++ K +K + EA
Sbjct: 58 KTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEA 99
Score = 26.1 bits (57), Expect = 7.7
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ K KK K+ +++ K +K + +E + + + +E
Sbjct: 54 EAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEE 98
Score = 25.8 bits (56), Expect = 8.5
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 3 RSRRRKEKK--KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++ +K K +++ K +K K +K + LE+ ++ E +L
Sbjct: 58 KTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKKVQIELDTSL 110
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 31.0 bits (70), Expect = 0.25
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
K KK K ++ K K K +
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGS 28
Score = 27.9 bits (62), Expect = 2.2
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKK----KKKKKT 32
M K+ K ++ K K K +K KK
Sbjct: 1 MAPKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
Score = 27.5 bits (61), Expect = 3.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
++ K K K K+K KK +T
Sbjct: 14 TQQALKVAKAVKSGSIKRKSKKIRT 38
Score = 26.8 bits (59), Expect = 6.0
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ K ++ K K K K+K +I
Sbjct: 10 ADGKTQQALKVAKAVKSGSIKRKSKKI 36
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 31.6 bits (71), Expect = 0.25
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
IR+ + +KK K++ + KK ++ K ++ ++ +
Sbjct: 247 IRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERA-ARVAAK 289
Score = 29.3 bits (65), Expect = 1.3
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ + EKK K++ + KK ++ K K E K+ ++
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 29.3 bits (65), Expect = 1.6
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ K +KK K++ + KK ++ E+ R +I AL
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAAL 293
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.6 bits (71), Expect = 0.26
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R + K KK+ K+ KK T Q+ L +R
Sbjct: 248 RADPTMAKSTKKEPATHKRYNLKKLTYEQRK--ASLVER 284
Score = 29.6 bits (66), Expect = 1.2
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 7/54 (12%)
Query: 4 SRRRKEKKKKKKKKKKKKKK------KKKKKKKKTEIQQMELEKLQQRHREEIE 51
+ + KK+ K+ KK K ++ + E+ E
Sbjct: 252 TMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNS-SAGADDDDEEEDDE 304
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 31.1 bits (70), Expect = 0.31
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+RK + KK+ KK +
Sbjct: 159 KRKVSSAEYYAKKRAFTKKVASANATAAESDVA 191
Score = 28.0 bits (62), Expect = 2.7
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
E K+K + KK+ KK + + +
Sbjct: 157 EAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAK 192
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 29.9 bits (67), Expect = 0.32
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
+ +K+ KK+ ++ KKK +++K I + +KL+ + +E + L +
Sbjct: 11 KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQ 60
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific
recombinase, resolvase, DNA-binding protein, protein-DNA
complex, DNA integration, DNA invertase, DNA
recombination; 3.20A {Staphylococcus aureus}
Length = 209
Score = 30.8 bits (70), Expect = 0.33
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE--IEALCRNIG 58
+ R+ + + K+K K + K +++ ++ + E I + + +
Sbjct: 127 ESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRVIYHRVVEMLEEGQAISKIAKEVN 186
Query: 59 IGCALPPPPPTVSRHTLY 76
I +R T+Y
Sbjct: 187 I-----------TRQTVY 193
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 30.3 bits (68), Expect = 0.34
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
R KE K+K K+ K K +KK ++ +K
Sbjct: 103 RSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSDH 142
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 31.4 bits (70), Expect = 0.35
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ RR+K KK KK KK KK K
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 31.0 bits (69), Expect = 0.50
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R++ +K KK KK KK KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 31.0 bits (69), Expect = 0.51
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ ++ KK KK KK +KK TE
Sbjct: 385 KPKKPVVGKKAAATKKPAADKKPAEKKPTTE 415
Score = 30.6 bits (68), Expect = 0.54
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ ++ KK KK KK KK
Sbjct: 376 KGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 30.6 bits (68), Expect = 0.54
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+ + KK KK KK KK KK + +K ++
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 30.2 bits (67), Expect = 0.73
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+S + KK ++KK KK KK KK
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKP 389
Score = 30.2 bits (67), Expect = 0.78
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+ +K KK KK KK +KK ++
Sbjct: 385 KPKKPVVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 30.2 bits (67), Expect = 0.82
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ ++ K+ KK KK KK +K
Sbjct: 380 TVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 30.2 bits (67), Expect = 0.85
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ +K KK KK KK KK
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAADKKP 407
Score = 30.2 bits (67), Expect = 0.85
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R + +K KK KK KK KK +
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAAD 404
Score = 29.8 bits (66), Expect = 0.99
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R ++ K+ KK KK KK KK
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 29.8 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K+ KK KK KK KK E + EK
Sbjct: 384 KKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 29.8 bits (66), Expect = 1.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ R++K KK KK KK KK T+
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 29.5 bits (65), Expect = 1.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+K ++KK KK KK KK KK
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 28.7 bits (63), Expect = 2.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ K+ ++KK KK KK KK K
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPVVGKK 394
Score = 28.7 bits (63), Expect = 2.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
K KK ++KK KK KK KK
Sbjct: 360 AKSEEKGVPGKKPRRKKGKKTVGVKKPKK 388
Score = 28.3 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K KK KK KK KK + E +K
Sbjct: 385 KPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 28.3 bits (62), Expect = 3.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ KK ++KK KK KK KK
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVV 391
Score = 27.5 bits (60), Expect = 6.1
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+K ++KK KK KK KK + + ++ E+
Sbjct: 369 GKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 27.1 bits (59), Expect = 8.1
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ ++ KK KK +KK ++KK
Sbjct: 389 PVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 31.1 bits (70), Expect = 0.36
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQ 35
KK+ KK K KK K + ++K +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEE 139
Score = 29.6 bits (66), Expect = 0.99
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
+K+ KK K KK K + ++K +E
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDD 141
Score = 29.2 bits (65), Expect = 1.3
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++++KK K KK K + ++K ++ +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDD 141
Score = 28.4 bits (63), Expect = 2.4
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+R K+ K KK K + ++K ++ + M
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPM 147
Score = 26.5 bits (58), Expect = 8.8
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKK 28
M ++R +K K KK K + ++K
Sbjct: 110 MDGLKKRDKKNKSKKSKPAQGGEQKLIS 137
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.4 bits (71), Expect = 0.37
Identities = 11/69 (15%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 7 RKEKKKKKKKKKKKKKKKK---KKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCAL 63
++E + +KKK++++++ + + K+++ ++M K E + L + G
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVF 451
Query: 64 PPPPPTVSR 72
+ R
Sbjct: 452 DKDLSKLKR 460
Score = 31.0 bits (70), Expect = 0.43
Identities = 7/50 (14%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ----ME--LEKLQQ 44
M + + +E++ + + + K+++++++K +K E + + + L+
Sbjct: 398 MRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRS 447
Score = 27.5 bits (61), Expect = 5.1
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
R + K+K+ K K E+ ++ + Q
Sbjct: 59 RQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQN 100
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 29.6 bits (66), Expect = 0.37
Identities = 9/56 (16%), Positives = 27/56 (48%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
I +++ + K + + K+ +K++ E Q+ EL++ ++ E ++ +
Sbjct: 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLEL 88
Score = 25.8 bits (56), Expect = 9.3
Identities = 9/57 (15%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 3 RSRRRKEKKKKK-KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH---REEIEALCR 55
R ++ +K++ +K+K + +++ +K + ++EL+ L+ ++ + + R
Sbjct: 51 SCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQNFARTVAR 107
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA,
protein-DNA complex, transcription factor, BZIP, C/EBP;
1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A
1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B
1nwq_A
Length = 78
Score = 29.1 bits (65), Expect = 0.39
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
S K ++++ +K + K K + +T+ + +EL +R ++++E L R +
Sbjct: 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 29.9 bits (67), Expect = 0.39
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++RK+KK + KK K+ KK ++
Sbjct: 106 QQRKQKKNRDKKIFGTGKRLAKKVARR 132
Score = 28.8 bits (64), Expect = 1.0
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R +R+++K + KK K+ KK ++ +
Sbjct: 105 RQQRKQKKNRDKKIFGTGKRLAKKVARRNAD 135
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 30.8 bits (69), Expect = 0.40
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+R E K+K + K+K + + T++ M +++ +R
Sbjct: 62 RARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRR 104
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 30.0 bits (68), Expect = 0.41
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
M + + ++ + +K +K K
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 30.0 bits (68), Expect = 0.42
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEI 34
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.8 bits (65), Expect = 1.1
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ K ++ + +K +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.4 bits (64), Expect = 1.7
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
K K ++ + +K +I +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.0 bits (63), Expect = 1.8
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+ K ++ + +K +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPKGV 31
Score = 28.0 bits (63), Expect = 2.2
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ + ++ + +K +K K
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 29.6 bits (67), Expect = 0.42
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ + K+ +K++ KK K
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.8 bits (65), Expect = 0.82
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + K+ +K++ KK K E
Sbjct: 84 PEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 27.3 bits (61), Expect = 2.3
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K+ +K++ KK K +
Sbjct: 85 EGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 3.3
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
K+ + + K+ +K+ + E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 4.3
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + K+ +K++ KK++
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSK 107
Score = 26.5 bits (59), Expect = 4.7
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ + K+ +K++ KK
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKG 108
Score = 26.1 bits (58), Expect = 6.4
Identities = 2/30 (6%), Positives = 13/30 (43%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
++ + + K+ +K++++ +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 30.7 bits (69), Expect = 0.44
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 22/127 (17%)
Query: 171 DDDFTGRVATVSGWGRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINSFLCA 230
T +G + G + VC+ T TI + A
Sbjct: 70 TSAQTLLPRVANGSSFVTVRG--------STEAAVGAAVCRSGRTTGYQCGTITAKNVTA 121
Query: 231 GYANG------QRDSC--EGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVYM--R 280
YA G Q ++C GDSGG + G +S G + G+ R
Sbjct: 122 NYAEGAVRGLTQGNACMGRGDSGGSWIT---SAGQAQ-GVMSGGNVQSNGNNCGIPASQR 177
Query: 281 TTYYKPW 287
++ ++
Sbjct: 178 SSLFERL 184
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 30.5 bits (68), Expect = 0.46
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKK----KKKKTEIQQMELEKLQQRHREEIEAL 53
R +K +++ KK+ ++ K TE +KL+++ E + A+
Sbjct: 155 MRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAI 208
Score = 30.5 bits (68), Expect = 0.53
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME-----LEKLQQRHREEIE 51
+ R + + + K +++ KK+ + IQ++ L + R+++++E
Sbjct: 143 LEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLE 198
Score = 29.0 bits (64), Expect = 1.9
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
+ K +K + ++K ++K+ + Q + +LQQ E E + +
Sbjct: 181 QTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTL 230
Score = 28.2 bits (62), Expect = 3.1
Identities = 9/54 (16%), Positives = 29/54 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
++ + K KK++K+ K+ ++K K+++ +Q+ + L+ + +++
Sbjct: 24 LQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVV 77
Score = 27.1 bits (59), Expect = 6.8
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 5 RRRKEKKKKKKKKKKKK-KKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
K+ KKK + K+ + + + K ++++ E +E ++ +
Sbjct: 134 SNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKL 185
Score = 26.7 bits (58), Expect = 9.2
Identities = 10/63 (15%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM--------ELEKLQQRHREEIEA 52
++ +++EK+ K+ ++K K++++ +K + ++ +L++R E+
Sbjct: 30 FLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIH 89
Query: 53 LCR 55
L
Sbjct: 90 LGE 92
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 30.3 bits (69), Expect = 0.55
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
IR+R+ ++ K+K KKK+K K+ +++
Sbjct: 174 EIRARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 29.5 bits (67), Expect = 0.85
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R RK + K+K KKK+K K+ +++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 28.4 bits (64), Expect = 2.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++R R ++ + K+K KKK+K K+ ++
Sbjct: 171 LMREIRARKMEDSKEKNGKKKRKSLAKRIRE 201
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 29.2 bits (65), Expect = 0.56
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKK 27
+ R+RKE KK K+K+ KKKK+ +
Sbjct: 79 VDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.2 bits (65), Expect = 0.60
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
E+K+K+ KK K+K+ KKKK+
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLN 103
Score = 28.8 bits (64), Expect = 0.81
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.7 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKK 28
R++++ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.3 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKK 30
+++K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.3 bits (60), Expect = 2.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKK 29
RK K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 30.6 bits (68), Expect = 0.57
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
RK + + K +K+K K+ K ++ K +
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGK 379
Score = 30.2 bits (67), Expect = 0.85
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ E + K +K+K K+ K ++ + +
Sbjct: 342 KMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKA 380
Score = 29.4 bits (65), Expect = 1.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
R+ + + K +K+K K+ K E
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPE 369
Score = 28.7 bits (63), Expect = 2.6
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ R+ + + K +K+K K+ K +
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLS 367
Score = 27.9 bits (61), Expect = 4.6
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ + K +K+K K+ K ++ K
Sbjct: 345 TLAEAARIKARKEKLDSKRTKLSPEEAAK 373
Score = 27.5 bits (60), Expect = 6.3
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
R + + K +K+K K+ K +
Sbjct: 340 ARKMATLAEAARIKARKEKLDSKRTKLSPEE 370
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 30.3 bits (68), Expect = 0.57
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
RR + K KK K+ +KK+ + + +L +
Sbjct: 159 RRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQF 196
Score = 29.1 bits (65), Expect = 1.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQ 44
+ E+K++ + K KK K+ +K E+ L+ ++
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKD 191
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 30.2 bits (68), Expect = 0.60
Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 23/129 (17%)
Query: 170 DDDDFTGRVATVSGW---GRLKYGGGVPSVLQEVQVPVIENNVCQEMFQTAGHAKTIINS 226
+D+ V T +G ++ G + + + VC+ T H TI
Sbjct: 53 PGNDY-AFVRTGAGVNLLAQVNNYSGGRVQVAGHTAAPVGSAVCRSGSTTGWHCGTITAL 111
Query: 227 FLCAGYANG------QRDSC--EGDSGGPLMIEREDGHWVLAGTVSHGIKCAAPYLPGVY 278
Y G + C GDSGG L+ G+ G S G
Sbjct: 112 NSSVTYPEGTVRGLIRTTVCAEPGDSGGSLL----AGNQAQ-GVTSGGSGNCRTG----- 161
Query: 279 MRTTYYKPW 287
TT+++P
Sbjct: 162 -GTTFFQPV 169
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.0 bits (70), Expect = 0.63
Identities = 7/49 (14%), Positives = 26/49 (53%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R ++ + +KKK +++ +++ ++ E + +L+ + +I+ +
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988
Score = 30.2 bits (68), Expect = 1.0
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R E+++++ ++ + +KKK +++ E Q E E +Q+ + E
Sbjct: 931 EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Score = 30.2 bits (68), Expect = 1.1
Identities = 9/51 (17%), Positives = 25/51 (49%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R +E+ ++ + +KKK +++ +++ E ++ +KLQ +
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Score = 29.8 bits (67), Expect = 1.1
Identities = 7/49 (14%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + + ++++++ ++ + +KKK + ++ L+++ EE A
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQ---QQMLDLEEQLEEEEAAR 971
Score = 29.8 bits (67), Expect = 1.3
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R +K++K +++ +K K+K + + Q EL+ + ++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Score = 29.0 bits (65), Expect = 2.1
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + +++ +K K+K + + ++ + + Q EL+ + EE++A
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
sapiens} SCOP: c.72.3.1
Length = 313
Score = 30.5 bits (68), Expect = 0.65
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 15 KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIE 51
K + K +++ +K EI++ ++ LQ RH I
Sbjct: 274 KDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIG 310
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 29.6 bits (66), Expect = 0.68
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ KE+K + KK + KK K KK
Sbjct: 111 KQMKERKNRAKKIRGVKKTKAGDAGKK 137
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_G
Length = 219
Score = 30.0 bits (67), Expect = 0.72
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
SR ++ K K K +K
Sbjct: 15 SRSHTYHRRGLWAIKAKHGGALPKAEKPA 43
Score = 28.1 bits (62), Expect = 2.8
Identities = 9/60 (15%), Positives = 13/60 (21%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIG 60
R K K K +K + K + + L I G
Sbjct: 19 TYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPG 78
Score = 26.9 bits (59), Expect = 8.1
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
RS + K K K +K
Sbjct: 16 RSHTYHRRGLWAIKAKHGGALPKAEKPAA 44
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 30.6 bits (69), Expect = 0.74
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K+ K+ ++K + KK+ K + +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAP 672
Score = 29.4 bits (66), Expect = 1.8
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K+ ++K + KK+ K + + +A
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKA 674
Score = 29.0 bits (65), Expect = 2.3
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
K+ ++K + KK+ K + + + E +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 30.0 bits (67), Expect = 0.79
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
K KK K K+ KK K T Q+ ++++ +
Sbjct: 261 VKSTKKNDKPKRDHKKFYPTKLTAAQRK--DRVKTK 294
Score = 28.5 bits (63), Expect = 2.4
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKK-----KKTEIQQ 36
IR + K KK K K+ KK K +K ++
Sbjct: 254 IRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKT 293
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.2 bits (67), Expect = 0.83
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM--ELEKLQQRHREEIEALCRNI 57
++ E + ++ + K K+K +K K + E+Q+ +++K + +E+E R
Sbjct: 332 KKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQF 385
Score = 30.2 bits (67), Expect = 0.97
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ KEK +K K + + +++ ++ KK E Q ELE+ +++ +E
Sbjct: 344 MKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANW 392
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U
2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U
3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y*
3kc4_U 3or9_U 3ora_U ...
Length = 71
Score = 27.9 bits (62), Expect = 0.93
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+R R EK ++K+ K K+ KK E
Sbjct: 32 VRRREFYEKPTTERKRAKASAVKRHAKKLARE 63
Score = 25.6 bits (56), Expect = 5.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKL 42
RRR+ +K ++K+ K K+ KK + +L
Sbjct: 33 RRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRL 70
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P*
1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P*
1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P*
1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Length = 149
Score = 29.1 bits (65), Expect = 0.98
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+R R++K+ +K +K K ++ ++ + Q+
Sbjct: 62 RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRT 104
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 28.4 bits (63), Expect = 1.0
Identities = 10/55 (18%), Positives = 31/55 (56%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
+ + + + K K++ +++KKKK +++K I + ++L+++ +E + +
Sbjct: 6 IQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYN 60
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 29.2 bits (65), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+RKEK K +KKK+ + +K+ +K E
Sbjct: 159 KRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
Score = 26.9 bits (59), Expect = 7.8
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++K+K+K K +KKK+ + + + +EK ++ E ++
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTH 199
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 29.7 bits (67), Expect = 1.1
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKK 22
M +R ++KK K K
Sbjct: 1 MTETRTETKQKKPSTFTKVMKI 22
Score = 27.4 bits (61), Expect = 6.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 4 SRRRKEKKKKKKKKKKKKKKK 24
+ R E K+KK K K
Sbjct: 2 TETRTETKQKKPSTFTKVMKI 22
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 29.1 bits (65), Expect = 1.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
EK++ K +++ +KKK +KK + Q++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKL 180
Score = 28.4 bits (63), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTE 33
K +++ +KKK +KK KK+K E
Sbjct: 159 KPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.6 bits (61), Expect = 3.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+++ K +++ +KKK +KK KK ++ E
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.2 bits (60), Expect = 5.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
MI + + + K +++ +KKK +KK KK+ + +
Sbjct: 148 MILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+ ++ KKK +K+K+K K K+ IQ +E+E + R+
Sbjct: 80 LELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 28.5 bits (62), Expect = 1.3
Identities = 2/26 (7%), Positives = 6/26 (23%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R + K + +
Sbjct: 111 KRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 28.1 bits (61), Expect = 2.2
Identities = 2/28 (7%), Positives = 6/28 (21%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+R + K + +
Sbjct: 109 MKKRLANEAGSTGSAPATGGVXKPHRYR 136
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.5 bits (65), Expect = 1.4
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ-------QRHREEIEALCRNI 57
KE+ ++ K+ +K + + + E ++ KLQ + ++E + I
Sbjct: 520 KERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEI 576
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
K KKK + K+K+K + M+ E H+ + L +
Sbjct: 15 GPGPSGDMAAKMSKKKAGRGGGKRKEKL---ENMKKEMEINDHQLSVAELEQKYQ 66
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 29.5 bits (66), Expect = 1.4
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEI-----QQME--LEKLQQRHREEI 50
EK ++ K K+K+ +K T + QQ L ++
Sbjct: 47 EKAFAAREIKSLASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADL 95
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.1 bits (65), Expect = 1.4
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 29/89 (32%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQM------ELEKLQQRHREEIEALCR------ 55
+ +K++KK+ ++KK+ + +++K E E++ + E L R
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGN-FKVEPPDLFRGRGAHP 160
Query: 56 ----------------NIGIGCALPPPPP 68
N+ +PP P
Sbjct: 161 KTGKLKRRVNPEDIVLNLSKDAPVPPAPE 189
Score = 27.9 bits (62), Expect = 3.4
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKK 31
+KE+KK+ ++KK+ + +++K ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEE 128
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 29.3 bits (65), Expect = 1.4
Identities = 7/50 (14%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 3 RSRRRKEKKK------KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
+ + K+ K+ + + + + +K K+ + +E E+L++
Sbjct: 110 QVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEG 159
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 28.6 bits (64), Expect = 1.4
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEI 34
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 27.9 bits (62), Expect = 2.7
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEI 34
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 27.5 bits (61), Expect = 3.9
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKK 30
+K +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 27.1 bits (60), Expect = 5.1
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKK 28
+K +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET:
B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 29.6 bits (66), Expect = 1.5
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGI 59
R+ KE K + K + K +K+ + K R ++E +
Sbjct: 25 RKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFF 79
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 28.8 bits (64), Expect = 1.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+RKEK K ++K+ K + K +K E
Sbjct: 164 KRKEKAKVSYDRRKQLAKLRVKAEKAAE 191
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 29.4 bits (65), Expect = 1.5
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
R R+E + +K+ + KK K + + E+L E
Sbjct: 317 GKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPE 363
Score = 27.5 bits (60), Expect = 6.5
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ +K+ + KK K + +Q+ EK+ +
Sbjct: 322 EEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTH 368
Score = 27.5 bits (60), Expect = 6.7
Identities = 6/50 (12%), Positives = 17/50 (34%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+ R + + +K+ + KK K + + + ++ E
Sbjct: 318 KRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETT 367
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 28.7 bits (65), Expect = 1.5
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++ R+ K+ K+K+ + K K
Sbjct: 165 LLTLETRRNMSLNIDGKRSGKQKRTDRVKGK 195
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.3 bits (66), Expect = 1.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
K +++ KK+KK+ + KKK +LQ
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 28.9 bits (65), Expect = 2.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
KK+KK+ + KKK + + +Q ME+ + H
Sbjct: 480 PSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEHH 518
Score = 28.1 bits (63), Expect = 3.8
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQ 43
+++ KK+KK+ + KKK + + L+ ++
Sbjct: 477 EQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 13 KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHR 47
+++ KK+KK+ + KKK + + LE Q
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 29.0 bits (64), Expect = 1.6
Identities = 5/49 (10%), Positives = 17/49 (34%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + +++ + K + E++ E+L ++ L
Sbjct: 242 KEIVKPFIPAAVRERLGNRAKSMVLGRMEMEPDLREELTAFFAPDVARL 290
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 29.5 bits (67), Expect = 1.6
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 18/71 (25%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPPPPP 68
+ + K+KK + K+ I ++ +E+ + ++ PP P
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKK------FA-------PPEPF 245
Query: 69 TVSRHTLYTLQ 79
S TLQ
Sbjct: 246 KTS-----TLQ 251
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 28.4 bits (63), Expect = 1.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
R + K++KK ++K K ++ K+K K K E + E
Sbjct: 107 TRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
Score = 26.1 bits (57), Expect = 9.4
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+I + + +KK ++K K ++ K+K K E
Sbjct: 105 VITRLKLDKDRKKILERKAKSRQVGKEKGKYKE 137
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 28.8 bits (65), Expect = 1.7
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 5 RRRKEKKKKKKKKKKKKKKKK 25
R R++ K+K +++ +K+K+
Sbjct: 171 RLRRDSKEKNERRLAYQKRKE 191
Score = 28.4 bits (64), Expect = 2.1
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKK 26
++R R + K+K +++ +K+K+
Sbjct: 166 IVRQVRLRRDSKEKNERRLAYQKRKE 191
Score = 27.3 bits (61), Expect = 4.9
Identities = 4/25 (16%), Positives = 17/25 (68%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
++ + ++ K+K +++ +K+K++
Sbjct: 168 RQVRLRRDSKEKNERRLAYQKRKES 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 28.5 bits (64), Expect = 1.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKK 30
+E K +++ +KK + K
Sbjct: 134 VAREMKIVTERRAEKKADSRVTYSK 158
Score = 27.0 bits (60), Expect = 5.9
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
++ K +++ +KK + T
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVT 155
Score = 26.6 bits (59), Expect = 6.8
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K +++ +KK + K
Sbjct: 134 VAREMKIVTERRAEKKADSRVTYSK 158
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 28.2 bits (62), Expect = 1.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQME 38
+KK K+ K + KK KKK T+ + +
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKD 37
Score = 28.2 bits (62), Expect = 1.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
++ KE K + KK KKK K K K ++
Sbjct: 9 QKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNHA 42
Score = 28.2 bits (62), Expect = 2.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+KK K+ K + KK KKK
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKK 29
Score = 27.8 bits (61), Expect = 2.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + K + KK KKK K K K K
Sbjct: 10 KKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.8 bits (61), Expect = 2.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKK 29
M + +KK K+ K + KK KKK
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKK 29
Score = 27.4 bits (60), Expect = 3.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+++ ++ K + KK KKK K K +
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWTKGKAKD 37
Score = 26.3 bits (57), Expect = 9.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
++ +KK K+ K + KK K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGK 27
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 28.7 bits (65), Expect = 1.7
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R + + + + +K+ + K+ +
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELSQ 191
Score = 28.3 bits (64), Expect = 2.4
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R + + + + +K+ + K+
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELS 190
Score = 27.5 bits (62), Expect = 3.8
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+R + + + + +K+ + K+ ++
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 6.4
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKK 26
R E + +K+ + K+ +
Sbjct: 166 AFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 8.0
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ ++E + + + + +K+ + K
Sbjct: 160 PKPKREAFLEANRAELVRFQKEARALLK 187
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 28.4 bits (63), Expect = 1.9
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELE 40
EK++ K +KK + +++ Q +
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 28.0 bits (62), Expect = 2.6
Identities = 3/33 (9%), Positives = 15/33 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
++ + + + K +KK + +++ + +
Sbjct: 148 LVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 28.5 bits (63), Expect = 1.9
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEI 50
+ KKK KK+K K K +K + Q + ++ ++
Sbjct: 4 EVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVC 42
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP:
h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.8 bits (64), Expect = 1.9
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
M + KE + + + KK + + K+ E + + L+K + +E++
Sbjct: 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Score = 28.8 bits (64), Expect = 1.9
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ KKK + K K+ + + E + E ++ +E+ +L
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSL 46
Score = 28.1 bits (62), Expect = 3.6
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
R+ + KK + + K+ + + +KK + + EL+K + ++ E L
Sbjct: 21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL 71
Score = 27.7 bits (61), Expect = 5.0
Identities = 10/51 (19%), Positives = 25/51 (49%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ ++++K +++ K K K+ + + + E +LEK +E+ A
Sbjct: 213 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263
Score = 26.9 bits (59), Expect = 8.5
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
RS++ +++ +KK K + + K + + Q +LE +++ +
Sbjct: 35 RSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATD 80
>2wt7_B Transcription factor MAFB; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 27.3 bits (60), Expect = 1.9
Identities = 9/54 (16%), Positives = 28/54 (51%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCR 55
+ ++K + K + + + K+ ++K E ++ +L + ++ ++E+ L R
Sbjct: 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 26.5 bits (59), Expect = 2.0
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
K KK ++ K + ++KK+ + E E ++L++++
Sbjct: 3 KLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEA 41
Score = 26.2 bits (58), Expect = 2.9
Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 2 IRSRRRKEKKKKK----KKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
++ ++ E+ K ++KK+ +++ + K+ E + L++ +EI+ L
Sbjct: 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 28.1 bits (62), Expect = 2.0
Identities = 2/25 (8%), Positives = 9/25 (36%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKK 26
+ R+ ++ K+ + +
Sbjct: 15 LARHRKDQRWADNDFNKRLLGSRWR 39
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 28.9 bits (64), Expect = 2.0
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + K +K K K K + ++L+K++ ++E+E L
Sbjct: 75 EHKTTKMSNKSNEKSGNVLPKDKPYKTLDDY--LKLDKIKDLSKQEVEFL 122
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 28.3 bits (64), Expect = 2.3
Identities = 6/73 (8%), Positives = 21/73 (28%), Gaps = 12/73 (16%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIG 60
+I R + K + + K K + + ++ + + + + +
Sbjct: 118 LIIERTMAGLAAARNKGRIGGRPPKLTKAEWEQAGRLLAQGIP------RKQVALIYDVA 171
Query: 61 CALPPPPPTVSRH 73
T+ +
Sbjct: 172 ------LSTLYKK 178
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 28.6 bits (63), Expect = 2.3
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
M + + K KK KK+ +K+
Sbjct: 1 MTQGKNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.5 bits (60), Expect = 5.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K KK KK+ +K+
Sbjct: 7 PGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.5 bits (60), Expect = 5.6
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K K KK KK+ +
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSR 28
Score = 27.1 bits (59), Expect = 7.8
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKKKKK 31
+ K KK KK+ +K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRK 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 26.3 bits (58), Expect = 2.4
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 3 RSRRRKEKKK----KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ R R+E+ K K + ++++ + + + E ++ L+ +E E L
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 28.2 bits (62), Expect = 2.4
Identities = 5/49 (10%), Positives = 19/49 (38%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
+ + +K + + ++K+ K + + +L + + + R
Sbjct: 129 RHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRA 177
Score = 26.7 bits (58), Expect = 8.8
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ ++K+ K ++ K+ + ++Q E + EE
Sbjct: 143 WRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEE 182
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 27.4 bits (60), Expect = 2.4
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
+K+++ +K +++ + K +
Sbjct: 79 DTNLQKQRELQKANQEQYAEGKMR 102
Score = 26.3 bits (57), Expect = 5.2
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R + + +K+++ +K +++ + K
Sbjct: 73 RVLKYVDTNLQKQRELQKANQEQYAEGKM 101
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.8 bits (64), Expect = 2.5
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 24/87 (27%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKT--------EIQQMELEKLQQ----RHREEI--- 50
++EKK + K++KK K+K+ + + +Q+ +++ R R +
Sbjct: 113 VQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLM 172
Query: 51 ---------EALCRNIGIGCALPPPPP 68
E + NIG +P PP
Sbjct: 173 GKLKVRVQPEDITINIGETAEVPVPPA 199
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1c_O 4a1e_O
Length = 185
Score = 28.1 bits (62), Expect = 2.5
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+R E K+K + K+K + + T++ M +++ +R
Sbjct: 62 RARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRR 104
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 28.7 bits (64), Expect = 2.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
+ + K KKK K +++K ++ Q
Sbjct: 537 DFRVKIYKKKAKNPNNSEEQKLLYDVVQR 565
Score = 28.3 bits (63), Expect = 4.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 19 KKKKKKKKKKKKKTEIQQMELEKLQQ 44
K KKK K +E Q++ + +Q+
Sbjct: 540 VKIYKKKAKNPNNSEEQKLLYDVVQR 565
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 28.3 bits (63), Expect = 2.6
Identities = 6/50 (12%), Positives = 18/50 (36%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ KKK+ ++++ +++E+ + E+E
Sbjct: 109 FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEEC 158
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 28.6 bits (63), Expect = 2.8
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ---------QMELEKLQQRHREEIEALC 54
KEK ++ K++ K ++ K+K+ EL+K++ + RE+
Sbjct: 729 WSLTKEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQEREDGAPGF 788
Query: 55 RNIG 58
+I
Sbjct: 789 SSIS 792
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 27.3 bits (60), Expect = 2.8
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
R KE + K K+ K K
Sbjct: 2 RLTKEAAAVAEGKSKQDASPKPYAVKY 28
Score = 27.3 bits (60), Expect = 3.0
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
R + + K K+ K K +
Sbjct: 2 RLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVV 34
Score = 26.5 bits (58), Expect = 4.9
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
E+ K+ + K K+ K ++
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVKY 28
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.1 bits (63), Expect = 3.0
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKK 25
I+ + ++K+ +++K ++
Sbjct: 175 IKVVLQPPRRKEVPRRRKNHRRSG 198
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.0 bits (62), Expect = 3.0
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ +R ++ K+K + K++K+++K +K K
Sbjct: 138 ELEARIKEIKEKYPRPPKRRKEERKGRKPWK 168
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R + KEK + K++K+++K +K K+
Sbjct: 142 RIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 28.3 bits (62), Expect = 3.1
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ + + K + +KK + + + + + + + + E+ Q + E +AL
Sbjct: 334 KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDAL 384
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 3.4
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 2 IRSRRRKEKKK-KKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIG 58
+ +K+ K+ K K+ K +K+K ++ E+ + + + + + +G
Sbjct: 52 HNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109
Score = 27.6 bits (62), Expect = 5.1
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
KE K KK K K K + + + H
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRHHHHH 484
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 27.9 bits (63), Expect = 3.4
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
IR +KK ++K ++ + ++K+
Sbjct: 154 SIREELEALEKKYEEKTGLPSPERVEARQKR 184
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.9 bits (63), Expect = 3.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQ 36
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.1 bits (61), Expect = 5.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
R++ EK+ K+ +KK+K K +
Sbjct: 156 RKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 26.3 bits (59), Expect = 9.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
S +++K +K+ K+ +KK+K K +
Sbjct: 152 SILKRKKFEKELKELQKKQKHKLEHHHH 179
Score = 26.3 bits (59), Expect = 10.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+R+K +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 27.5 bits (62), Expect = 3.6
Identities = 2/24 (8%), Positives = 7/24 (29%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKK 24
+R + + + K +
Sbjct: 163 KVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.5 bits (62), Expect = 4.2
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKK 30
+++ K + + K +
Sbjct: 161 KKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.1 bits (61), Expect = 5.3
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
++K + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 20 KKKKKKKKKKKKTEIQQMELEK-------LQQRHREEI 50
KK+K K K + + LE+ L + +EE+
Sbjct: 1 KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEV 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA
complex; HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 27.9 bits (61), Expect = 3.9
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
S ++ + KK +
Sbjct: 19 SHMASMTGGQQMGRGSSSVLASCPKKPVS 47
Score = 26.7 bits (58), Expect = 7.6
Identities = 2/31 (6%), Positives = 6/31 (19%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ R ++ + K
Sbjct: 13 GLVPRGSHMASMTGGQQMGRGSSSVLASCPK 43
Score = 26.7 bits (58), Expect = 8.0
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
R ++ + KK
Sbjct: 17 RGSHMASMTGGQQMGRGSSSVLASCPKK 44
Score = 26.7 bits (58), Expect = 8.9
Identities = 5/46 (10%), Positives = 21/46 (45%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
S + + K+ + + + K +++ E+ + +L + + + +
Sbjct: 187 SEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK 232
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 27.5 bits (61), Expect = 3.9
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKKT 32
+ + + K K K KK K KT
Sbjct: 1 MNKENKTQAVNKAKNTAKVAKKGSSITKHKT 31
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 27.8 bits (61), Expect = 3.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K K+ K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
Score = 27.0 bits (59), Expect = 8.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKK 28
M + ++ K KK +KK+ +K+
Sbjct: 1 MAVGKNKRLSKGKKGQKKRVVDPFTRKE 28
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 27.9 bits (61), Expect = 4.1
Identities = 7/53 (13%), Positives = 21/53 (39%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ ++ +K + + + KKK E + + E+ + ++ E +
Sbjct: 146 IKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM 198
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell
cycle, transcription; 2.55A {Homo sapiens} SCOP:
e.63.1.1
Length = 155
Score = 27.3 bits (60), Expect = 4.2
Identities = 8/40 (20%), Positives = 26/40 (65%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
+ + +++++ ++ K+K+ + ++ +QQ+ + L QR+R
Sbjct: 8 QNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRH 47
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 26.5 bits (59), Expect = 4.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKK 31
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
Score = 26.5 bits (59), Expect = 4.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKT 32
++ KK+ +KKK K+ +
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALS 26
>2kkm_A Translation machinery-associated protein 16; nucleus, structural
genomics, PSI-2, protein structure initiative; NMR
{Saccharomyces cerevisiae}
Length = 144
Score = 27.2 bits (60), Expect = 4.3
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 17/64 (26%)
Query: 7 RKEKKKKKKKKKKKKKKKKKKK----------KKKTEIQQMELEKLQQ-------RHREE 49
R++K KKK + K+ + + + ++ R E
Sbjct: 5 REDKIAAKKKLHQDKRVHELARVKFMQDVVNSDTFKGQPIFDHAHTREFIQSFIERDDTE 64
Query: 50 IEAL 53
++ L
Sbjct: 65 LDEL 68
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Length = 142
Score = 26.9 bits (60), Expect = 4.4
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKK--KT 32
R K KK + K + +K +T
Sbjct: 45 FARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRT 78
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.9 bits (62), Expect = 4.4
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+++ +++ ++KK ++ E + + E H + E
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEM 317
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 27.0 bits (60), Expect = 4.7
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ R+ + + K+++ K +K K
Sbjct: 100 TEKKARRPTRPTRASKERRLASKAQKSSVK 129
Score = 26.7 bits (59), Expect = 5.3
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKK 31
RR + + K+++ K +K K
Sbjct: 104 ARRPTRPTRASKERRLASKAQKSSVKA 130
Score = 26.3 bits (58), Expect = 8.2
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
MI+ ++K ++ + + K+++ K +
Sbjct: 94 MIKELTTEKKARRPTRPTRASKERRLASKAQ 124
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A
{Campylobacter jejuni} PDB: 2p56_A
Length = 288
Score = 27.9 bits (61), Expect = 4.7
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 9 EKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPPPPP 68
K K K E L+ L+ ++ I ALC + + P
Sbjct: 184 AMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIYKVNIYALCDDSILANHFPLSIN 243
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.9 bits (61), Expect = 4.8
Identities = 8/50 (16%), Positives = 25/50 (50%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEA 52
+++ + + + + + ++ KK ++ + Q+ELE + + +EA
Sbjct: 743 QAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEA 792
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural
genomics, PSI-2, protein structure initiative; 2.55A
{Neisseria meningitidis} SCOP: d.145.1.4
Length = 92
Score = 26.3 bits (59), Expect = 4.9
Identities = 3/24 (12%), Positives = 6/24 (25%)
Query: 241 EGDSGGPLMIEREDGHWVLAGTVS 264
P + D + G +
Sbjct: 3 AEREEEPAVQGNPDESLTVEGALE 26
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 27.2 bits (60), Expect = 5.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEI 34
+E K +K+ K KK K KK ++
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKL 179
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 27.5 bits (60), Expect = 5.3
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHRE 48
R++ K +K ++ K K++ +K +E ++ K
Sbjct: 190 RKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAP 233
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 26.8 bits (59), Expect = 5.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 10 KKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREE 49
+ KKK K +K + K +I + ELE+ + R E
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGE 41
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 26.3 bits (58), Expect = 5.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1 MIRSRRRKEKKKKKKKKKKKK 21
I R +++++KK KKKKKK
Sbjct: 84 KIAEIREQKREQKKDKKKKKK 104
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 26.8 bits (59), Expect = 5.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKK 31
K KK+ K + K K K KK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKA 27
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 27.4 bits (60), Expect = 5.6
Identities = 8/49 (16%), Positives = 22/49 (44%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
+ + + K+K + + K +++ + Q E+ +EE+ +L
Sbjct: 148 SARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLW 196
Score = 26.7 bits (58), Expect = 9.1
Identities = 7/53 (13%), Positives = 21/53 (39%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEAL 53
+ ++ +K + + + K+K E + + E+ Q+ ++ E
Sbjct: 132 IKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF 184
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 27.6 bits (61), Expect = 5.9
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRN 56
K K + K K K T + +Q + E+++ +
Sbjct: 487 IHNSNNKNKGENDLNKINIKDKSPTTFDVDMIYLRRQYMKNELKSFVES 535
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 25.8 bits (57), Expect = 6.3
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+ K KK+ +++ +K K K + +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFD 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 27.5 bits (60), Expect = 6.7
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
+ + K K + KKK + EI Q E
Sbjct: 524 TKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHED 560
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 26.0 bits (57), Expect = 7.2
Identities = 2/24 (8%), Positives = 14/24 (58%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK 26
+ R++ + + +++ + +K ++
Sbjct: 75 KKLRKEAEIEYRERLFRNQKILRE 98
Score = 25.6 bits (56), Expect = 8.7
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKK 27
+ RKE + + +++ + +K ++
Sbjct: 76 KLRKEAEIEYRERLFRNQKILRE 98
Score = 25.6 bits (56), Expect = 10.0
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
+EKK +K+ + + +++ + +K E +
Sbjct: 73 REKKLRKEAEIEYRERLFRNQKILREYR 100
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 26.9 bits (58), Expect = 7.3
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGIGCALPPPP 67
K KK K KK KK++ KK E +N GIG + P
Sbjct: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRP-------------KNFGIGQDIQPKR 49
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 26.1 bits (57), Expect = 7.4
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQQM 37
++ ++++K++ K K+ Q+
Sbjct: 84 IQEWNYIRQEEKERINAKNILKRNNRRCQV 113
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 27.3 bits (59), Expect = 7.5
Identities = 3/50 (6%), Positives = 18/50 (36%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
+ + + + KK++ +++ E + +++ + +
Sbjct: 130 KEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMM 179
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 26.6 bits (58), Expect = 7.6
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 5 RRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEK 41
R K +K K K + +++KKK+ + + + + ++
Sbjct: 118 GREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQ 154
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 26.2 bits (58), Expect = 7.9
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 2 IRSRRRKEKKKKKKKKKKKKKKKKKKKKKK 31
+ + +K KKK+++ K K+K
Sbjct: 77 LVVLYYNANRAFQKMDTKKKEEQLKLLKEK 106
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 27.2 bits (60), Expect = 7.9
Identities = 5/52 (9%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNI 57
R + + K K + +++ + + +L + + L ++
Sbjct: 116 RAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQ---FDYLVNSM 164
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 27.1 bits (61), Expect = 8.1
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 3 RSRRR-KEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
+R E ++K+ + K+ + Q + Q
Sbjct: 457 AGPQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDADQT 500
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 26.6 bits (58), Expect = 8.4
Identities = 6/43 (13%), Positives = 22/43 (51%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQR 45
R+R + K++ + K+K ++ + +++ + ++ +R
Sbjct: 62 RTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRR 104
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural
genomics; NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.4 bits (55), Expect = 8.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 12 KKKKKKKKKKKKKKKKKKKKTE 33
+K KKK +T+
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQ 23
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J
4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Length = 104
Score = 25.6 bits (55), Expect = 8.5
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKK 25
R RRK KK KK KK KKK+K
Sbjct: 78 RDSRRKAKKAASKKVKKTKKKEK 100
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 26.5 bits (59), Expect = 8.7
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALCRNIGI 59
+R EK K+ + ++ + K+ KK + EL+ L+ I A+ G+
Sbjct: 106 TRDGVEKDKRALEIEEMQLKQAKKDLSE------ELQILEAGLFSRIRAVLVAGGV 155
>2xzm_X RPS30E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_X 3j0o_X 3j0l_X 3j0p_X 3j0q_X
Length = 80
Score = 25.5 bits (55), Expect = 8.8
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
++ K +K+ K +KK K +K K + I
Sbjct: 9 AKAGKVRKQTPKVEKKDKPRKTPKGRSYKRIL 40
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling
protein; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 102
Score = 25.8 bits (56), Expect = 8.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 8 KEKKKKKKKKKKKKKKKKKKKKKKTEIQ 35
KK KK++K++K +KK K EI+
Sbjct: 10 HSSGKKLKKQEKEEKDFRKKFKYDGEIR 37
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 25.8 bits (56), Expect = 9.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1 MIRSRRRKEKKKKKKKKKKKKKKKKKKKKKKTE 33
+IR+ +E+K KK K++ + KK +KK +
Sbjct: 89 IIRAFLIEEQKIVKKVVKEQTEAAKKSEKKAKK 121
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.7 bits (58), Expect = 9.4
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKK 26
+ R ++ + + K ++ K+
Sbjct: 243 QGRTLRDVGELTRSSTKTRRSIKR 266
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 26.3 bits (58), Expect = 9.4
Identities = 0/25 (0%), Positives = 0/25 (0%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKK 30
Sbjct: 153 AAAAAAAAAAAAAAAAAAAAAAAAA 177
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound
to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A
{Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 26.7 bits (59), Expect = 9.5
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 24 KKKKKKKKTEIQQMELEKLQQRH---REEIEALCRNIGIGCALPPPPPTVSRHTL-YTLQ 79
KKKKK + E L EE+EAL + + + L
Sbjct: 7 KKKKKNAMRPPGYEDPELLASVTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALF 66
Query: 80 FPQQDS------MMTNFD 91
+ + FD
Sbjct: 67 RNRNRRNLFADRIFDVFD 84
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 26.9 bits (60), Expect = 9.6
Identities = 6/43 (13%), Positives = 17/43 (39%)
Query: 4 SRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRH 46
++ K ++ K+K + + K+ K + + + H
Sbjct: 731 FQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHHH 773
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 25.3 bits (55), Expect = 9.7
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 23 KKKKKKKKKTEIQQMELE--------KLQQRHREEIEALCRNIGI 59
K+ + K T Q+ ++ ++Q+ +E C G+
Sbjct: 16 TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 26.5 bits (58), Expect = 9.7
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQME----LEKLQQRHREE 49
R R+ ++K + K+K + ++ M L +L +R+RE
Sbjct: 62 RCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRES 112
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 26.7 bits (58), Expect = 9.7
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 6 RRKEKKKKKKKKKKKKKKKKKKKKKKTEIQQMELEKLQQRHREEIEALC 54
+ + + KKK + K K +++ Q E L Q EE+ L
Sbjct: 143 SARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILY 191
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 26.7 bits (59), Expect = 9.7
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 3 RSRRRKEKKKKKKKKKKKKKKKKKKKKK 30
+ + K+K K+KK+K
Sbjct: 477 KPKFTLGKRKATPTTSSTSTTAKRKKRK 504
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.403
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,685,028
Number of extensions: 290834
Number of successful extensions: 5866
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 786
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)