BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15292
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 2 FKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD-----QTVKLVGKSA 56
L+ ++ FVHP YS S ND+AL+ + + Q I+P+CLPD + + G+
Sbjct: 67 LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQET 126
Query: 57 TVAGWG 62
V GWG
Sbjct: 127 LVTGWG 132
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 75 PTYV--SISNDVALIKIDKDVVFKQHIIPVCLPD-----QTVKLVGKSATVAGWG 122
P Y + ND+AL+ + + Q I+P+CLPD + + G+ V GWG
Sbjct: 78 PNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG 132
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 2 FKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD-----QTVKLVGKSA 56
L+ ++ FVHP YS S ND+AL+ + + Q I+P+CLPD + + G+
Sbjct: 67 LDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQET 126
Query: 57 TVAGWG 62
V GWG
Sbjct: 127 LVTGWG 132
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 75 PTYV--SISNDVALIKIDKDVVFKQHIIPVCLPD-----QTVKLVGKSATVAGWG 122
P Y + ND+AL+ + + Q I+P+CLPD + + G+ V GWG
Sbjct: 78 PNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG 132
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
L + + +HPQY P+ F NDVAL+++ + V ++P+CLP+ + G V+GWG+
Sbjct: 240 LGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGP-QQEGAMVIVSGWGK 298
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 123
+ NDVAL+++ + V ++P+CLP+ + G V+GWG+
Sbjct: 255 TFENDVALVELLESPVLNAFVMPICLPEGP-QQEGAMVIVSGWGK 298
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
L + + +HPQY P+ F NDVAL+++ + V ++P+CLP+ + G V+GWG+
Sbjct: 85 LGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQ-EGAMVIVSGWGK 143
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 123
+ NDVAL+++ + V ++P+CLP+ + G V+GWG+
Sbjct: 100 TFENDVALVELLESPVLNAFVMPICLPEGPQQ-EGAMVIVSGWGK 143
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 4 LNTRQSFVHPQY--SPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAG 60
L ++ HP Y D +D+ALI++++ V F +I PVCLP ++ VG+ TV G
Sbjct: 112 LGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVG 171
Query: 61 WGRTR 65
WGRT
Sbjct: 172 WGRTE 176
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 40 IPVCLPDQTVKLVGKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQHI 99
+ VC+PD+ + L G T+ +H + + Y +D+ALI++++ V F +I
Sbjct: 101 VRVCVPDKPIDL-GIEETI------QHPDYVDGSKDRY----HDIALIRLNRQVEFTNYI 149
Query: 100 IPVCLPDQTVKL-VGKSATVAGWGRTR 125
PVCLP ++ VG+ TV GWGRT
Sbjct: 150 RPVCLPQPNEEVQVGQRLTVVGWGRTE 176
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 8 QSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLP--DQTVKLVGKSAT--VAGWGR 63
+ +H +Y +D+AL+K+++ V F++HI P+CLP D+ + + +T V GWG
Sbjct: 208 KHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGT 267
Query: 64 TRHASS 69
T + SS
Sbjct: 268 TENGSS 273
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLP--DQTVKLVGKSAT--VAGWGRTRHAGHKE 131
I +D+AL+K+++ V F++HI P+CLP D+ + + +T V GWG T + +
Sbjct: 220 IMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGSSSD 275
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLV---GKSATVAGWGRT 64
+VHP+Y+ + D+AL+K+ K V F +I PVCLPD QTV + G V GWG
Sbjct: 85 YVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
R ++++ P+ + + N
Sbjct: 145 RETWTTNINEIQPSVLQVVN 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLV---GKSATVAGWGRTRHA 127
++ D+AL+K+ K V F +I PVCLPD QTV + G V GWG R
Sbjct: 95 NLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRET 147
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLV---GKSATVAGWGRT 64
+VHP+Y+ + D+AL+K+ K V F +I PVCLPD QTV + G V GWG
Sbjct: 85 YVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
R ++++ P+ + + N
Sbjct: 145 RETWTTNINEIQPSVLQVVN 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLV---GKSATVAGWGRTRHA 127
++ D+AL+K+ K V F +I PVCLPD QTV + G V GWG R
Sbjct: 95 NLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRET 147
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLV---GKSATVAGWGRT 64
+VHP+Y+ + D+AL+K+ K V F +I PVCLPD QTV + G V GWG
Sbjct: 85 YVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
R ++++ P+ + + N
Sbjct: 145 RETWTTNINEIQPSVLQVVN 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLV---GKSATVAGWGRTRHA 127
++ D+AL+K+ K V F +I PVCLPD QTV + G V GWG R
Sbjct: 95 NLDRDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRET 147
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
R ++++ P+ + + N
Sbjct: 145 RETWTTNINEIQPSVLQVVN 164
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRHA 127
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG R
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLRET 147
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
FV+ Y P+ NDV++IK + F ++ P+C PD V + + +GWG
Sbjct: 78 FVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGV 137
Query: 70 LSSAIPTYVSIS 81
A+ YV+++
Sbjct: 138 CCPAVLRYVTLN 149
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ NDV++IK + F ++ P+C PD V + + +GWG G
Sbjct: 87 TLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGG 136
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 250 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 309
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 310 KETWTANVGKGQPSVLQVVN 329
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTR 125
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 260 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 310
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 117 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 176
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 177 KETWTANVGKGQPSVLQVVN 196
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 127 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 178
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 121 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 180
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 181 KETWTANVGKGQPSVLQVVN 200
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 131 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 182
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 66 HASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRT 124
H L P SND+AL+ + + ++I PVCLP LV GK TV GWG T
Sbjct: 195 HGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNT 254
Query: 125 RHAGHK 130
++ G +
Sbjct: 255 QYYGQQ 260
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 2 FKLNTRQSFVHPQYSP------SDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GK 54
+L + H Y P + ND+AL+ + + ++I PVCLP LV GK
Sbjct: 185 LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGK 244
Query: 55 SATVAGWGRTRH----ASSLSSA-IPTYVSISNDVA 85
TV GWG T++ A L A +P ISNDV
Sbjct: 245 ICTVTGWGNTQYYGQQAGVLQEARVPI---ISNDVC 277
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 116 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 175
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 176 KETWTANVGKGQPSVLQVVN 195
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 126 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 177
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 66 HASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRT 124
H L P SND+AL+ + + ++I PVCLP LV GK TV GWG T
Sbjct: 195 HGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNT 254
Query: 125 RHAGHK 130
++ G +
Sbjct: 255 QYYGQQ 260
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 2 FKLNTRQSFVHPQYSP------SDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GK 54
+L + H Y P + ND+AL+ + + ++I PVCLP LV GK
Sbjct: 185 LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGK 244
Query: 55 SATVAGWGRTRH----ASSLSSA-IPTYVSISNDVA 85
TV GWG T++ A L A +P ISNDV
Sbjct: 245 ICTVTGWGNTQYYGQQAGVLQEARVPI---ISNDVC 277
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 175 KETWTANVGKGQPSVLQVVN 194
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 125 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 176
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 114 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 173
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 174 KETWTANVGKGQPSVLQVVN 193
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 124 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 175
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 117 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 176
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 177 KETWTANVGKGQPSVLQVVN 196
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 127 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 178
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 66 HASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRT 124
H L P SND+AL+ + + ++I PVCLP LV GK TV GWG T
Sbjct: 78 HGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNT 137
Query: 125 RHAGHK 130
++ G +
Sbjct: 138 QYYGQQ 143
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 2 FKLNTRQSFVHPQYSP------SDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GK 54
+L + H Y P + ND+AL+ + + ++I PVCLP LV GK
Sbjct: 68 LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGK 127
Query: 55 SATVAGWGRTRH----ASSLSSA-IPTYVSISNDVA 85
TV GWG T++ A L A +P ISNDV
Sbjct: 128 ICTVTGWGNTQYYGQQAGVLQEARVPI---ISNDVC 160
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 121 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 180
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 181 KETWTANVGKGQPSVLQVVN 200
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 131 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 182
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 175 KETWTANVGKGQPSVLQVVN 194
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 125 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 176
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 134 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 193
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 194 KETWTANVGKGQPSVLQVVN 213
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 144 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 195
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 175 KETWTANVGKGQPSVLQVVN 194
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 125 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 176
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 115 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 174
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 175 KETWTANVGKGQPSVLQVVN 194
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 125 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 176
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 86 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 145
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 146 KETWTANVGKGQPSVLQVVN 165
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 96 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 147
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTTNVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPSSCAP-AGTMCTVSGWGNTMSSTA 129
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKSATLNTYVQPVALPSSCAP-AGTMCTVSGWGNT 124
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 89 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 148
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 149 KETWTANVGKGQPSVLQVVN 168
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 99 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 150
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 12 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 71
Query: 65 RH 66
+
Sbjct: 72 KE 73
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 22 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 73
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRH 66
RQ +H ++P NDVAL+ +D+ +V +I +CLP Q+ +GWG+
Sbjct: 215 RQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEF 274
Query: 67 ASSLSSAIPTYVSISNDVALIKIDKD 92
S Y +I + L +D+D
Sbjct: 275 GSRHR-----YSNILKKIQLPTVDRD 295
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKER 132
++ NDVAL+ +D+ +V +I +CLP Q+ +GWG+ + G + R
Sbjct: 227 TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGK-KEFGSRHR 279
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTR 65
F+H Y+ + F ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 74 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 133
Query: 66 HA 67
Sbjct: 134 RG 135
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTRHA 127
ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 83 AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG 135
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTR 65
F+H Y+ + F ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 74 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 133
Query: 66 HA 67
Sbjct: 134 RG 135
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTRHA 127
ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 83 AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG 135
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTR 65
F+H Y+ + F ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 160 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 219
Query: 66 HA 67
Sbjct: 220 RG 221
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTRHA 127
ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 169 AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG 221
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH 66
+
Sbjct: 145 KE 146
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAP-AGTMCTVSGWGNTMSSTA 129
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAP-AGTMCTVSGWGNT 124
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RHASSLSSAI 74
+ S +
Sbjct: 145 KETWGQPSVL 154
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RHASSLS 71
+ S
Sbjct: 145 KETGQPS 151
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRHAGH 129
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG + G
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ 149
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLS 71
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++ S
Sbjct: 93 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSSTADS 151
Query: 72 SAI 74
+ +
Sbjct: 152 NKL 154
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 94 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNT 144
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLS 71
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++ S
Sbjct: 88 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSSTADS 146
Query: 72 SAI 74
+ +
Sbjct: 147 NKL 149
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 89 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNT 139
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RHASSL 70
+ S+
Sbjct: 145 KGQPSV 150
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTR 125
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLS 71
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++ S
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSSTADS 131
Query: 72 SAI 74
+ +
Sbjct: 132 NKL 134
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNT 124
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLS 71
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++ S
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSSTADS 131
Query: 72 SAI 74
+ +
Sbjct: 132 NKL 134
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNT 124
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAP-AGTMCTVSGWGNTMSSTA 129
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAP-AGTMCTVSGWGNT 124
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RHASSLS 71
+ S
Sbjct: 145 KETGQPS 151
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRHAGH 129
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG + G
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQ 149
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAP-AGTMCTVSGWGNTMSSTA 129
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAP-AGTMCTVSGWGNT 124
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RHASSLS 71
+ S
Sbjct: 145 KEKGQPS 151
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRHAGH 129
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG + G
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQ 149
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWG 122
++ D+AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 95 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ + + +I PVCLPD+ KL+ G V GWG
Sbjct: 134 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 193
Query: 65 RH--ASSLSSAIPTYVSISN 82
R +S++ P+ + + N
Sbjct: 194 RETWTTSVAEVQPSVLQVVN 213
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRTRH 126
++ D+AL+K+ + + +I PVCLPD+ KL+ G V GWG R
Sbjct: 144 NLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRE 195
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTR 65
F+H Y+ + F ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 235 FIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 294
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS---ATVAGWGRTR 125
ND+ALIK++ VV +I P+CLP + + ++ T +GWG T+
Sbjct: 248 NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQ 294
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ + + +I PVCLPD+ KL+ G V GWG
Sbjct: 85 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
R +S++ P+ + + N
Sbjct: 145 RETWTTSVAEVQPSVLQVVN 164
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRTRH 126
++ D+AL+K+ + + +I PVCLPD+ KL+ G V GWG R
Sbjct: 95 NLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRE 146
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
HP YS + ND+ LIK+ K ++ PV LP G TV+GWG T +++
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMSSTA 129
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 74 PNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNT 124
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ + + +I PVCLPD+ KL+ G V GWG
Sbjct: 85 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
R +S++ P+ + + N
Sbjct: 145 RETWTTSVAEVQPSVLQVVN 164
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRTRH 126
++ D+AL+K+ + + +I PVCLPD+ KL+ G V GWG R
Sbjct: 95 NLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRE 146
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHASS 69
HP ++ F D+AL++++K + + P+CLPD + V GK+ V GWG T++ +
Sbjct: 86 HPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGT 144
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAG 128
D+AL++++K + + P+CLPD + V GK+ V GWG T++ G
Sbjct: 97 DIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGG 143
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHASS 69
HP ++ F D+AL++++K + + P+CLPD + V GK+ V GWG T++ +
Sbjct: 86 HPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGT 144
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAG 128
D+AL++++K + + P+CLPD + V GK+ V GWG T++ G
Sbjct: 97 DIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGG 143
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRT 64
++HP+Y+ + ++AL+K+ K V F +I PVCLPD+ ++ G V GWG
Sbjct: 85 YIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNL 144
Query: 65 RH--ASSLSSAIPTYVSISN 82
+ +++ P+ + + N
Sbjct: 145 KETWTANVGKGQPSVLQVVN 164
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRH 126
++ ++AL+K+ K V F +I PVCLPD+ ++ G V GWG +
Sbjct: 95 NLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRT 64
HP Y+P +F ND+ L+++++ + + P+ LP ++ G++ +VAGWG+T
Sbjct: 77 HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT 130
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHAG 128
+ SND+ L+++++ + + P+ LP ++ G++ +VAGWG+T G
Sbjct: 84 NFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG 134
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRT 64
HP Y+P +F ND+ L+++++ + + P+ LP ++ G++ +VAGWG+T
Sbjct: 77 HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT 130
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHAG 128
+ SND+ L+++++ + + P+ LP ++ G++ +VAGWG+T G
Sbjct: 84 NFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG 134
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 69 SLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTR 125
+ ++AI TY ++D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR
Sbjct: 78 NFNAAINTY---NHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVF 134
Query: 126 HAG 128
H G
Sbjct: 135 HKG 137
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 20 FRNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTRH 66
+ +D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR H
Sbjct: 86 YNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH 135
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 69 SLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTR 125
+ ++AI TY ++D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR
Sbjct: 78 NFNAAINTY---NHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVF 134
Query: 126 HAG 128
H G
Sbjct: 135 HKG 137
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 18 SDFRNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTRH 66
+ + +D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR H
Sbjct: 84 NTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH 135
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 69 SLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTR 125
+ ++AI TY ++D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR
Sbjct: 78 NYNAAINTY---NHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVF 134
Query: 126 HAG 128
H G
Sbjct: 135 HKG 137
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 12 HPQYSPS--DFRNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTRH 66
H Y+ + + +D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR H
Sbjct: 76 HHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH 135
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 10 FVHPQYS-PSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRT 64
++HP+Y+ + D+AL+K+ + + +I PVCLPD+ KL+ G V GWG
Sbjct: 85 YIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNR 144
Query: 65 RH 66
R
Sbjct: 145 RE 146
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ--TVKLV--GKSATVAGWGRTRH 126
++ D+AL+K+ + + +I PVCLPD+ KL+ G V GWG R
Sbjct: 95 NLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRE 146
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 8 QSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRH 66
Q ++P Y+ ND+A++ ++ V + +I P+CLP++ V G+ ++AGWG +
Sbjct: 77 QIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIY 136
Query: 67 ASSLSSAI 74
S + +
Sbjct: 137 QGSTADVL 144
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAG 128
+ND+A++ ++ V + +I P+CLP++ V G+ ++AGWG + G
Sbjct: 90 NNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQG 138
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHASSL 70
HP Y+P +F ND+ L+++++ + + P+ LP ++ G+ +VAGWG ++
Sbjct: 77 HPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTLA 136
Query: 71 SSAIPTYVSISNDVALIKI 89
++ +++ D ++
Sbjct: 137 TTLQEVLLTVQKDCQCERL 155
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 122
+ SND+ L+++++ + + P+ LP ++ G+ +VAGWG
Sbjct: 84 NFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWG 128
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
KL + F + +Y+ ND+ L+K+ F Q + VCLP + G + GW
Sbjct: 67 KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGW 126
Query: 62 GRTRHASS 69
G TR+ ++
Sbjct: 127 GLTRYTNA 134
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 126
++I+ND+ L+K+ F Q + VCLP + G + GWG TR+
Sbjct: 82 LTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 64
HP YS + ND+ LIK+ K Q++ V LP + TV+GWG T
Sbjct: 73 HPNYSSYNINNDIMLIKLTKPATLNQYVHAVALPTECAADA-TMCTVSGWGNT 124
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
P Y S I+ND+ LIK+ K Q++ V LP + TV+GWG T
Sbjct: 74 PNYSSYNINNDIMLIKLTKPATLNQYVHAVALPTECAADA-TMCTVSGWGNT 124
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
KL + F + +Y+ ND+ L+K+ F Q + VCLP + G + GW
Sbjct: 82 KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGW 141
Query: 62 GRTRHASS 69
G TR+ ++
Sbjct: 142 GLTRYTNA 149
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 126
++I+ND+ L+K+ F Q + VCLP + G + GWG TR+
Sbjct: 97 LTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 146
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
KL + F + +Y+ ND+ L+K+ F Q + VCLP + G + GW
Sbjct: 67 KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGW 126
Query: 62 GRTRH 66
G TR+
Sbjct: 127 GLTRY 131
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 126
++I+ND+ L+K+ F Q + VCLP + G + GWG TR+
Sbjct: 82 LTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + V LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASVSLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + V LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASVSLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSETYNNDIMLIKLKSAASLXSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S +ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSETYNNDIMLIKLKSAASLXSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 2 FKLNTRQSFVHPQYSP-SDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVA 59
+ + + HP+Y P ND+AL+++D V + I P+ LP + V G ++A
Sbjct: 64 LTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMA 123
Query: 60 GWGRTRHASSLSSAI 74
GWG T LS +
Sbjct: 124 GWGLTHQGGRLSRVL 138
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWGRTRHAGHKER 132
++ ND+AL+++D V + I P+ LP + V G ++AGWG T G R
Sbjct: 82 ALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSR 136
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 69 SLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTR 125
+ ++AI Y ++D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR
Sbjct: 78 NYNAAINKY---NHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVF 134
Query: 126 HAG 128
H G
Sbjct: 135 HKG 137
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 12 HPQYSPS--DFRNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTRH 66
H Y+ + + +D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR H
Sbjct: 76 HHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH 135
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 69 SLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTR 125
+ ++AI Y ++D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR
Sbjct: 78 NYNAAINKY---NHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVF 134
Query: 126 HAG 128
H G
Sbjct: 135 HKG 137
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 12 HPQYSPS--DFRNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTRH 66
H Y+ + + +D+AL+++D+ +V ++ P+C+ D+ + L S V+GWGR H
Sbjct: 76 HHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFH 135
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 85 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 143
Query: 64 TRHASS 69
T+ + +
Sbjct: 144 TKSSGT 149
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 94 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 148
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 85 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 143
Query: 64 TRHASS 69
T+ + +
Sbjct: 144 TKSSGT 149
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 94 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 148
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 70 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 128
Query: 64 TRHASS 69
T+ + +
Sbjct: 129 TKSSGT 134
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 79 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 133
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 71 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 129
Query: 64 TRHASS 69
T+ + +
Sbjct: 130 TKSSGT 135
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 80 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 134
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 79 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 137
Query: 64 TRHASS 69
T+ + +
Sbjct: 138 TKSSGT 143
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 88 PSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 142
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 8 QSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK----LVGKSATVAGWGR 63
Q + Y P +D+AL+++ + VV H++P+CLP++T + + V+GWG+
Sbjct: 75 QVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQ 134
Query: 64 T--RHASSLS 71
R A++L
Sbjct: 135 LLDRGATALE 144
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 76 TYV--SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK----LVGKSATVAGWGR 123
TYV + ++D+AL+++ + VV H++P+CLP++T + + V+GWG+
Sbjct: 81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQ 134
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLXSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 7 RQSFVHPQY---SPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 62
R+ VHP Y +F D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 75 RRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 134
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 122
+ D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 90 NFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 134
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHASS 69
HP ++ F D+AL++++K + + P+ LPD + V GK+ V GWG T++ +
Sbjct: 86 HPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGT 144
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAG 128
D+AL++++K + + P+ LPD + V GK+ V GWG T++ G
Sbjct: 97 DIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGG 143
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 8 QSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK----LVGKSATVAGWGR 63
Q + Y P +D+AL+++ + VV H++P+CLP++T + + V+GWG+
Sbjct: 75 QVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQ 134
Query: 64 T--RHASSL 70
R A++L
Sbjct: 135 LLDRGATAL 143
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 76 TYV--SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK----LVGKSATVAGWGR 123
TYV + ++D+AL+++ + VV H++P+CLP++T + + V+GWG+
Sbjct: 81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQ 134
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 7 RQSFVHPQY---SPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 62
R+ VHP Y +F D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 164 RRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 223
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 122
+ D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 179 NFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 223
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 7 RQSFVHPQY---SPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 62
R+ VHP Y +F D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 164 RRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 223
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 122
+ D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 179 NFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 223
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHASSL 70
HP Y+P +F N++ L+++++ + + P+ LP ++ G+ +VAGWG ++
Sbjct: 77 HPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTLA 136
Query: 71 SSAIPTYVSISNDVALIKI 89
++ +++ D ++
Sbjct: 137 TTLQEVLLTVQKDCQCERL 155
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H ++ + D+A++++ + F++++ P CLP+ + + K+ V+G+GRT
Sbjct: 77 HSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
LSS +
Sbjct: 137 GRLSSTL 143
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAG 128
D+A++++ + F++++ P CLP+ + + K+ V+G+GRT G
Sbjct: 88 DIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGRTHEKG 137
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 15 YSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 64
+ P + D+ LIK+ + V + ++P+CLP + VG V+GWGR
Sbjct: 179 FHPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRN 228
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
D+ LIK+ + V + ++P+CLP + VG V+GWGR + E
Sbjct: 187 DIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANLNFTE 235
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y + ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYDSNTLNNDIMLIKLKSAASLDSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 74 PSYDSNTLNNDIMLIKLKSAASLDSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 2 FKLNTRQSFVHPQYSP-SDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVA 59
+ + + HP+Y P N++AL+++D V + I P+ LP + V G ++A
Sbjct: 64 LTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMA 123
Query: 60 GWGRTRHASSLSSAI 74
GWG T LS +
Sbjct: 124 GWGLTHQGGRLSRVL 138
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWGRTRHAGHKER 132
++ N++AL+++D V + I P+ LP + V G ++AGWG T G R
Sbjct: 82 ALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSR 136
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 73 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 131
Query: 64 TRHASS 69
T+ + S
Sbjct: 132 TKSSGS 137
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP ++ G ++GWG T+ +G
Sbjct: 88 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTKSSG 136
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 65 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 123
Query: 64 TRHASS 69
T+ + S
Sbjct: 124 TKSSGS 129
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP ++ G ++GWG T+ +G
Sbjct: 80 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTKSSG 128
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 65 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 123
Query: 64 TRHASS 69
T+ + S
Sbjct: 124 TKSSGS 129
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP ++ G ++GWG T+ +G
Sbjct: 80 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTKSSG 128
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 65 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 123
Query: 64 TRHASS 69
T+ + S
Sbjct: 124 TKSSGS 129
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP ++ G ++GWG T+ +G
Sbjct: 80 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTKSSG 128
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 7 RQSFVHPQYSPSD---FRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 62
R+ VHP Y + F D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 232 RRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 291
Score = 32.7 bits (73), Expect = 0.064, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGWG 122
D+AL++++ V +++P+CLPD T +G V+G+G
Sbjct: 251 DIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFG 291
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
+HP Y+ + ND+ LIK+ K ++ V LP G V+GWG +SS
Sbjct: 72 MHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPSSCAS-SGTRCLVSGWGNLSGSSS 129
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 123
P+Y S + ND+ LIK+ K ++ V LP G V+GWG
Sbjct: 74 PSYNSRNLDNDIMLIKLSKPASLNSYVSTVALPSSCAS-SGTRCLVSGWGN 123
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 65 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 123
Query: 64 TRHASS 69
T+ + S
Sbjct: 124 TKSSGS 129
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP ++ G ++GWG T+ +G
Sbjct: 80 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTKSSG 128
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 77 YVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGH 129
Y + ND++L+K+ + F ++ P+ LP+Q G V GWG T G+
Sbjct: 90 YNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGD-VIVTGWGTTSEGGN 141
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
+H + + ND++L+K+ + F ++ P+ LP+Q G V GWG T +
Sbjct: 84 LHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGD-VIVTGWGTTSEGGN 141
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRTRHASSL 70
HP Y + D+AL+++ + + F ++I P+ LP G TV GWG + SL
Sbjct: 79 HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANASFPNGLHCTVTGWGHVAPSVSL 138
Query: 71 SSAIP 75
+ P
Sbjct: 139 LTPKP 143
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP + + ++GWG
Sbjct: 68 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGN 127
Query: 64 TRHASS 69
T+ + S
Sbjct: 128 TKSSGS 133
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP + + ++GWG T+ +G
Sbjct: 83 TLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGNTKSSG 132
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 4 LNTRQSFVHPQY-------SPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVG 53
L F+HP + ++F ND+AL+++ V + P+CLP + + G
Sbjct: 148 LTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDG 207
Query: 54 KSATVAGWGRTR 65
++GWGRT
Sbjct: 208 DLGLISGWGRTE 219
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTR 125
+ ND+AL+++ V + P+CLP + + G ++GWGRT
Sbjct: 169 TNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTE 219
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 65 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLP-RSCAAAGTECLISGWGN 123
Query: 64 TRHASS 69
T+ + S
Sbjct: 124 TKSSGS 129
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ + V LP ++ G ++GWG T+ +G
Sbjct: 80 TLDNDIMLIKLSSPATLXSRVATVSLP-RSCAAAGTECLISGWGNTKSSG 128
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GEQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQ 139
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GEQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQ 139
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRTRHASSL 70
HP Y + D+AL+++ + + F ++I P+ LP G TV GWG + SL
Sbjct: 79 HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSL 138
Query: 71 SSAIP 75
+ P
Sbjct: 139 LTPKP 143
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRTRHASSL 70
HP Y + D+AL+++ + + F ++I P+ LP G TV GWG + SL
Sbjct: 79 HPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSL 138
Query: 71 SSAIP 75
+ P
Sbjct: 139 LTPKP 143
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGR 63
HP Y+P D ND+ L+K+ ++ + + P+ LP + + G VAGWG+
Sbjct: 78 HPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK 130
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 92 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 151
Query: 68 SSLSSAI 74
S+ +
Sbjct: 152 GRQSTRL 158
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 103 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 154
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGR 63
HP Y+P D ND+ L+K+ ++ + + P+ LP + + G VAGWG+
Sbjct: 78 HPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK 130
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HPQY ND+ LIK+ V H+ + LP G ++GWG
Sbjct: 65 INAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAP-PATGTKCLISGWGN 123
Query: 64 TRHASS 69
T + +
Sbjct: 124 TASSGA 129
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
+++ND+ LIK+ V H+ + LP G ++GWG T +G
Sbjct: 80 TLNNDIMLIKLSSRAVINAHVSTISLPTAP-PATGTKCLISGWGNTASSG 128
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHA 67
H +++ + D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT
Sbjct: 77 HNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEK 136
Query: 68 SSLSSAI 74
S+ +
Sbjct: 137 GRQSTRL 143
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPD----QTVKLVGKSATVAGWGRTRHAGHK 130
D+A++++ + F+ ++ P CLP+ ++ + K+ V+G+GRT G +
Sbjct: 88 DIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ 139
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 65 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 123
Query: 64 TR 65
T+
Sbjct: 124 TK 125
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTR 125
++ ND+ LIK+ + V LP ++ G ++GWG T+
Sbjct: 80 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTK 125
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP ++ + ND+ LIK+ + V LP ++ G ++GWG
Sbjct: 22 INAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGN 80
Query: 64 TR 65
T+
Sbjct: 81 TK 82
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTR 125
++ ND+ LIK+ + V LP ++ G ++GWG T+
Sbjct: 37 TLDNDIMLIKLSSPATLNSRVATVSLP-RSCAAAGTECLISGWGNTK 82
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L Q F +P+++ RND+ L+K+ F + + VCLP+ G GWG
Sbjct: 65 LKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTGWG 124
Query: 63 RTRH 66
+T++
Sbjct: 125 KTKY 128
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 126
++ ND+ L+K+ F + + VCLP+ G GWG+T++
Sbjct: 80 TVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTGWGKTKY 128
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 15 YSPSDFRNDVALIKIDKDVVFKQH--IIPVCLPDQTVKLVGKSATVAGWGRTRHASSLSS 72
Y P ND+ L+++D++ I+P+ L + TV+ G VAGWG R LS
Sbjct: 81 YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE-AGTRCQVAGWGSQRSGGRLSR 139
Query: 73 AIPTYVSIS 81
P +V+++
Sbjct: 140 -FPRFVNVT 147
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 82 NDVALIKIDKDVVFKQH--IIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKER 132
ND+ L+++D++ I+P+ L + TV+ G VAGWG R G R
Sbjct: 88 NDLMLLQLDREANLTSSVTILPLPLQNATVE-AGTRCQVAGWGSQRSGGRLSR 139
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 15 YSPSDFRNDVALIKIDKDVVFKQH--IIPVCLPDQTVKLVGKSATVAGWGRTRHASSLSS 72
Y P ND+ L+++D++ I+P+ L + TV+ G VAGWG R LS
Sbjct: 81 YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE-AGTRCQVAGWGSQRSGGRLSR 139
Query: 73 AIPTYVSIS 81
P +V+++
Sbjct: 140 -FPRFVNVT 147
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 82 NDVALIKIDKDVVFKQH--IIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKER 132
ND+ L+++D++ I+P+ L + TV+ G VAGWG R G R
Sbjct: 88 NDLMLLQLDREANLTSSVTILPLPLQNATVE-AGTRCQVAGWGSQRSGGRLSR 139
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 15 YSPSDFRNDVALIKIDKDVVFKQH--IIPVCLPDQTVKLVGKSATVAGWGRTRHASSLSS 72
Y P ND+ L+++D++ I+P+ L + TV+ G VAGWG R LS
Sbjct: 81 YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE-AGTRCQVAGWGSQRSGGRLSR 139
Query: 73 AIPTYVSIS 81
P +V+++
Sbjct: 140 -FPRFVNVT 147
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 82 NDVALIKIDKDVVFKQH--IIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKER 132
ND+ L+++D++ I+P+ L + TV+ G VAGWG R G R
Sbjct: 88 NDLMLLQLDREANLTSSVTILPLPLQNATVE-AGTRCQVAGWGSQRSGGRLSR 139
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLP---DQTVKLVGKSATVAG 60
+N+ + H ++P + NDVALIKI V + +I P+ LP + K ATV+G
Sbjct: 69 VNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEELNNKFENIWATVSG 127
Query: 61 WGRTR 65
WG++
Sbjct: 128 WGQSN 132
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD--QTVKLVGKSATVAGWG 62
+H +YS S ND+AL+KI V I P CLP V ++ VAGWG
Sbjct: 89 IHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWG 142
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPD--QTVKLVGKSATVAGWG 122
S +ND+AL+KI V I P CLP V ++ VAGWG
Sbjct: 97 SEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWG 142
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
++ +S VHP Y+ ND+ LIK+ + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNKRRKNNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGN 123
Query: 64 TRHASS 69
T+ + +
Sbjct: 124 TKSSGT 129
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
+ND+ LIK+ + + LP G ++GWG T+ +G
Sbjct: 82 NNDIMLIKLKSAASLNSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 128
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 11 VHPQYSP--SDFRNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRTRHA 67
+H Y + + ND+A++ + + +I LP + G + ++GWGRT
Sbjct: 79 MHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGT 138
Query: 68 SSL-----SSAIPTYVSISNDVALIKIDKDVVFKQHII-----------------PVCLP 105
++L S+IP + A++ + ++ HI P+ P
Sbjct: 139 NNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCP 198
Query: 106 DQTVKLVGKSATV 118
D ++VG ++ V
Sbjct: 199 DGGTRVVGVTSWV 211
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRT 124
S SND+A++ + + +I LP + G + ++GWGRT
Sbjct: 88 ASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRT 135
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGR 63
R+ HP Y+ ND+ L+K+ + + P+ LP ++ G +VAGWGR
Sbjct: 72 RRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGR 129
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGR 123
+++ND+ L+K+ + + P+ LP ++ G +VAGWGR
Sbjct: 84 TLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGR 129
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 62
++ +SF HP YS ND+ L+K++ + V LP + + G + TV+GWG
Sbjct: 63 RIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSR-CEPPGTTCTVSGWG 121
Query: 63 RT 64
T
Sbjct: 122 TT 123
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
ND+ L+K++ + V LP + + G + TV+GWG T
Sbjct: 82 NDLMLVKLNSQARLSSMVKKVRLPSR-CEPPGTTCTVSGWGTT 123
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 62
++ +SF HP YS ND+ L+K++ + V LP + + G + TV+GWG
Sbjct: 63 RIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSR-CEPPGTTCTVSGWG 121
Query: 63 RT 64
T
Sbjct: 122 TT 123
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
ND+ L+K++ + V LP + + G + TV+GWG T
Sbjct: 82 NDLMLVKLNSQARLSSMVKKVRLPSR-CEPPGTTCTVSGWGTT 123
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVAGWGRTRHAG 128
S+D+AL+++D+ + ++ P+C+ D+ + L S V+GWGR + G
Sbjct: 87 SHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRG 137
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 5 NTRQSFVHPQYSPS--DFRNDVALIKIDKDVVFKQHIIPVCLPDQ---TVKLVGKSATVA 59
N ++ H Y+ + + +D+AL+++D+ + ++ P+C+ D+ + L S V+
Sbjct: 69 NVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGYVS 128
Query: 60 GWGR 63
GWGR
Sbjct: 129 GWGR 132
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 5 NTRQSFVHPQYSPSD-FRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
N ++ F+ P + S+ D+ LIK+DK + +HI P+ LP VG + GWG
Sbjct: 66 NPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLPSNPPS-VGSVCRIMGWGS 124
Query: 64 TRHASSLSSAIPTYVSIS 81
+ +P +I+
Sbjct: 125 ITIPNETYPDVPYCANIN 142
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 122
+ D+ LIK+DK + +HI P+ LP VG + GWG
Sbjct: 82 LDKDIMLIKLDKPISNSKHIAPLSLPSNPPS-VGSVCRIMGWG 123
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 2 FKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGW 61
F LNT+ P+ D+ LI++ + V + HI PV LP ++ + VG + GW
Sbjct: 75 FCLNTK--------FPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRS-RGVGSRCRIMGW 125
Query: 62 GR 63
G+
Sbjct: 126 GK 127
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 69 SLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 123
L++ P + D+ LI++ + V + HI PV LP ++ + VG + GWG+
Sbjct: 76 CLNTKFPN--GLDKDIMLIRLRRPVTYSTHIAPVSLPSRS-RGVGSRCRIMGWGK 127
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 5 NTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 64
+ + V+ Y RNDVAL+ + + F + P+ L L T+ GWG T
Sbjct: 69 DVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGST 128
Query: 65 RHASSLSSAI 74
R + +A+
Sbjct: 129 RLGGNTPNAL 138
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGH 129
+ NDVAL+ + + F + P+ L L T+ GWG TR G+
Sbjct: 84 LRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGN 133
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGW 61
KL + F HP+Y+ S +D+ L+K+ + + + P Q G+ VAGW
Sbjct: 69 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGW 128
Query: 62 GRT 64
GRT
Sbjct: 129 GRT 131
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGW 61
KL + F HP+Y+ S +D+ L+K+ + + + P Q G+ VAGW
Sbjct: 71 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGW 130
Query: 62 GRT 64
GRT
Sbjct: 131 GRT 133
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGW 61
KL + F HP+Y+ S +D+ L+K+ + + + P Q G+ VAGW
Sbjct: 69 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGW 128
Query: 62 GRT 64
GRT
Sbjct: 129 GRT 131
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWG 62
++P Y+ ND+A++ ++ V + +I P+ LP++ V G++ ++AGWG
Sbjct: 80 INPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWG 132
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAG 128
ND+A++ ++ V + +I P+ LP++ V G++ ++AGWG + G
Sbjct: 91 NDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQG 138
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGW 61
KL + F HP+Y+ S +D+ L+K+ + + + P Q G+ VAGW
Sbjct: 69 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGW 128
Query: 62 GRT 64
GRT
Sbjct: 129 GRT 131
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ-TVKLVGKSATVAGW 61
KL + F HP+Y+ S +D+ L+K+ + + + P Q G+ VAGW
Sbjct: 69 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAGW 128
Query: 62 GRT 64
GRT
Sbjct: 129 GRT 131
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRTR 65
++ F +P Y P+ D+ L+++ + +++ + LP + + G VAGWGRT
Sbjct: 70 KKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTH 129
Query: 66 HASSLSSAI 74
+++S S +
Sbjct: 130 NSASWSDTL 138
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRTR 65
++ F +P Y P+ D+ L+++ + +++ + LP + + G VAGWGRT
Sbjct: 70 KKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTH 129
Query: 66 HASSLSSAI 74
+++S S +
Sbjct: 130 NSASWSDTL 138
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V H+ V LP G ++GWG
Sbjct: 87 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCAP-AGTQCLISGWGN 145
Query: 64 T 64
T
Sbjct: 146 T 146
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V H+ V LP G ++GWG T +G E
Sbjct: 102 TLNNDIMLIKLSSPVKLNAHVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 153
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDV-VFKQHIIPVCLPDQTVKLVGKSATVAGWG 62
++ +S VHP Y+ + ND+ LIK+ + + + LP G ++GWG
Sbjct: 65 ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCAS-AGTQCLISGWG 123
Query: 63 RTRHASS 69
T+ + +
Sbjct: 124 NTKSSGT 130
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 75 PTYVS--ISNDVALIKIDKDV-VFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
P+Y S ++ND+ LIK+ + + + LP G ++GWG T+ +G
Sbjct: 74 PSYNSNTLNNDIMLIKLKSAASLXDSRVASISLPTSCAS-AGTQCLISGWGNTKSSG 129
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRTRHASS 69
VHP YS ++ ND+A++K+ + +I L + + G SATVAGWG T S
Sbjct: 74 VHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS 131
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 68 SSLSSAI--PTYVSISNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRT 124
SSLSS P+Y +ND+A++K+ + +I L + + G SATVAGWG T
Sbjct: 67 SSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGAT 126
Query: 125 RHAGHK 130
G
Sbjct: 127 SEGGSS 132
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRTRHASS 69
VHP YS ++ ND+A++K+ + +I L + + G SATVAGWG T S
Sbjct: 74 VHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS 131
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 68 SSLSSAI--PTYVSISNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRT 124
SSLSS P+Y +ND+A++K+ + +I L + + G SATVAGWG T
Sbjct: 67 SSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGAT 126
Query: 125 RHAGHK 130
G
Sbjct: 127 SEGGSS 132
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRTRHASS 69
VHP YS ++ ND+A++K+ + +I L + + G SATVAGWG T S
Sbjct: 74 VHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGS 131
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 68 SSLSSAI--PTYVSISNDVALIKIDKDVVFKQHIIPVCLP-DQTVKLVGKSATVAGWGRT 124
SSLSS P+Y +ND+A++K+ + +I L + + G SATVAGWG T
Sbjct: 67 SSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGAT 126
Query: 125 RHAGHK 130
G
Sbjct: 127 SEGGSS 132
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWG 62
+ R++ HPQY+ +ND+ L+++ + V +++ PV LP L G TVAGWG
Sbjct: 69 ITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWG 128
Query: 63 RTRHASSLSSAIPTYVSISNDVALIKI 89
R + + + D ++I
Sbjct: 129 RVSMRRGTDTLREVQLRVQRDRQCLRI 155
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGR 123
+I ND+ L+++ + V +++ PV LP L G TVAGWGR
Sbjct: 84 TIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGR 129
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWG 62
+ R++ HPQY+ +ND+ L+++ + V +++ PV LP L G TVAGWG
Sbjct: 69 ITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWG 128
Query: 63 RTRHASSLSSAIPTYVSISNDVALIKI 89
R + + + D ++I
Sbjct: 129 RVSMRRGTDTLREVQLRVQRDRQCLRI 155
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGR 123
+I ND+ L+++ + V +++ PV LP L G TVAGWGR
Sbjct: 84 TIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGR 129
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGR 63
FVH +++ RND+ALIK+ + V I CLP + L V GWGR
Sbjct: 92 FVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGR 146
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHAG 128
+ ND+ALIK+ + V I CLP + L V GWGR G
Sbjct: 102 VRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNG 151
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HPQY ND+ LIK+ V + + LP G ++GWG
Sbjct: 65 INAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAP-PATGTKCLISGWGN 123
Query: 64 TRHASS 69
T + +
Sbjct: 124 TASSGA 129
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
+++ND+ LIK+ V + + LP G ++GWG T +G
Sbjct: 80 TLNNDIMLIKLSSRAVINARVSTISLPTAP-PATGTKCLISGWGNTASSG 128
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGR 63
HP Y+ ND+ L+K+ + P+ LP + VK+ G VAGWG+
Sbjct: 78 HPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 130
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 75 PTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGR 123
P Y S ISND+ L+K+ + P+ LP + VK+ G VAGWG+
Sbjct: 79 PAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 130
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 32.3 bits (72), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+ +ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TYNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 644 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 689
Score = 34.3 bits (77), Expect = 0.023, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 646 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 689
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+ +ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TYNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 99 RKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQ 144
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 101 DIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQ 144
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 122
D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 93 DIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 122
D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 93 DIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG 133
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 122
D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 93 DIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG 133
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 122
D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 93 DIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 100 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 145
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 102 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 145
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 103 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 148
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 105 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 148
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 103 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 148
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 105 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 148
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 101 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 146
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 103 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 146
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 100 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 145
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 102 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 145
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 100 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 145
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 102 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 145
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 RNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
R D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 102 RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 147
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 125
D+AL+K+ V +IP CLP + ++ + GWG T+
Sbjct: 104 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ 147
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS--ATVAGWGR 63
VH +++ RND+ALIK+ + V I CLP++ L+ K V GWGR
Sbjct: 80 VHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEKD-SLLPKDYPCYVTGWGR 133
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS--ATVAGWGRTRHAG 128
+ ND+ALIK+ + V I CLP++ L+ K V GWGR G
Sbjct: 89 LRNDIALIKLAEHVELSDTIQVACLPEKD-SLLPKDYPCYVTGWGRLWTNG 138
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L Q F +P+++ RND+ L+K+ F + + V LP+ G GWG
Sbjct: 68 LKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTGWG 127
Query: 63 RTRH 66
+T++
Sbjct: 128 KTKY 131
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 126
++ ND+ L+K+ F + + V LP+ G GWG+T++
Sbjct: 83 TVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTGWGKTKY 131
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCL-PDQTVKLVGKSATVAGWGRTRHAGH 129
+ + L+K+++ V Q + +CL P+ V G +AGWG T+ G+
Sbjct: 83 GSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN 132
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 22 NDVALIKIDKDVVFKQHIIPVCL-PDQTVKLVGKSATVAGWGRTR 65
+ + L+K+++ V Q + +CL P+ V G +AGWG T+
Sbjct: 84 SQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETK 128
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP+Y+ ND+ LIK+ V + + LP G ++GWG
Sbjct: 65 INAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAP-PAAGTECLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ V + + LP G ++GWG T G
Sbjct: 80 TLDNDIMLIKLSSPAVINARVSTISLPTAP-PAAGTECLISGWGNTLSFG 128
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP+Y+ ND+ LIK+ V + + LP G ++GWG
Sbjct: 65 INAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAP-PAAGTECLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ V + + LP G ++GWG T G
Sbjct: 80 TLDNDIMLIKLSSPAVINARVSTISLPTAP-PAAGTECLISGWGNTLSFG 128
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L + VHPQ+ + D+AL+++++ V H+ V LP + G V GWG
Sbjct: 72 LPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
Query: 63 RTRHASSLSSAIP 75
+ L P
Sbjct: 132 DVDNDERLPPPFP 144
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 122
I D+AL+++++ V H+ V LP + G V GWG
Sbjct: 88 IGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L + VHPQ+ + D+AL+++++ V H+ V LP + G V GWG
Sbjct: 72 LPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
Query: 63 RTRHASSLSSAIP 75
+ L P
Sbjct: 132 DVDNDERLPPPFP 144
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 122
I D+AL+++++ V H+ V LP + G V GWG
Sbjct: 88 IGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L + VHPQ+ + D+AL+++++ V H+ V LP + G V GWG
Sbjct: 72 LPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
Query: 63 RTRHASSLSSAIP 75
+ L P
Sbjct: 132 DVDNDERLPPPFP 144
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 122
I D+AL+++++ V H+ V LP + G V GWG
Sbjct: 88 IGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 464 QEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG 520
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 122
D+AL+K++ V + P+CLP + + ++ V GWG
Sbjct: 480 DIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG 520
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 62
HP+Y+ ND+ LIK+D+ V I + + Q G S V+GWG
Sbjct: 75 HPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQ-CPTAGNSCLVSGWG 124
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 68 SSLSSAIPTYVS--ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 122
+SLS P Y ++ND+ LIK+D+ V I + + Q G S V+GWG
Sbjct: 69 ASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQ-CPTAGNSCLVSGWG 124
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 75 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 133
Query: 64 T 64
T
Sbjct: 134 T 134
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 90 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 141
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 73 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 131
Query: 64 T 64
T
Sbjct: 132 T 132
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 88 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 139
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP+Y+ ND+ LIK+ V + + LP G ++GWG
Sbjct: 65 INAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAP-PAAGTECLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
++ ND+ LIK+ V + + LP G ++GWG T G
Sbjct: 80 TLDNDIMLIKLSSPAVINARVSTISLPTAP-PAAGTECLISGWGNTLSFG 128
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 73 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 131
Query: 64 T 64
T
Sbjct: 132 T 132
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 88 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 139
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGH 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
+++ND+ LIK+ V + V LP G ++GWG T +G
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGHTLSSG 128
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP G ++GWG
Sbjct: 75 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 133
Query: 64 T 64
T
Sbjct: 134 T 134
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP G ++GWG T +G E
Sbjct: 90 TLNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 141
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + V LP + G ++GWG
Sbjct: 73 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGN 131
Query: 64 T 64
T
Sbjct: 132 T 132
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++ND+ LIK+ V + V LP + G ++GWG T +G E
Sbjct: 88 TLNNDIMLIKLSSPVKLNARVATVALP-SSCAPAGTQCLISGWGNTLSSGVNE 139
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 7 RQSFVHPQYSP-----------SDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS 55
RQSF HP Y P D ND+ L+ + + + + LP + K VG +
Sbjct: 67 RQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPK-VGST 125
Query: 56 ATVAGWGRTRHASSLSSAIPTYVSISNDVALIKI 89
+GWG T P+ + +S+D+ + I
Sbjct: 126 CLASGWGSTN---------PSEMVVSHDLQCVNI 150
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQ----HIIPVCLP-DQTVKLVGKSATVAGWGRTR 65
H Y+ ++ND+ALI++ KD K IP C+P + + V+GWGR +
Sbjct: 400 HENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREK 458
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 82 NDVALIKIDKDVVFKQ----HIIPVCLP-DQTVKLVGKSATVAGWGRTR 125
ND+ALI++ KD K IP C+P + + V+GWGR +
Sbjct: 410 NDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREK 458
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + ND+ LIK+ V + + LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAP-AGTQCLISGWGH 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
+++ND+ LIK+ V + + LP G ++GWG T +G
Sbjct: 80 TLNNDIMLIKLSSPVKLNARVATIALPSSCAP-AGTQCLISGWGHTLSSG 128
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTR 65
++ +H Y S+ +D+ALIK+ + + + P+ LP + + + V GWG ++
Sbjct: 77 KEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSK 136
Query: 66 HASSLSSAI 74
+ + +
Sbjct: 137 EKGEIQNIL 145
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAGH 129
++D+ALIK+ + + + P+ LP + + + V GWG ++ G
Sbjct: 91 NHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGE 140
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTR 65
++ +H Y S+ +D+ALIK+ + + + P+ LP + + + V GWG ++
Sbjct: 77 KEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSK 136
Query: 66 HASSLSSAI 74
+ + +
Sbjct: 137 EKGEIQNIL 145
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCLPDQT-VKLVGKSATVAGWGRTRHAGH 129
++D+ALIK+ + + + P+ LP + + + V GWG ++ G
Sbjct: 91 NHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGE 140
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + N++ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++N++ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNNIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
+N + HP + N++ LIK+ V + V LP G ++GWG
Sbjct: 65 VNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGN 123
Query: 64 T 64
T
Sbjct: 124 T 124
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGHKE 131
+++N++ LIK+ V + V LP G ++GWG T +G E
Sbjct: 80 TLNNNIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGVNE 131
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 2 FKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGW 61
F LNTR + + D+ LI++++ V HI P+ LP VG + GW
Sbjct: 72 FCLNTRNDTI--------WDKDIMLIRLNRPVRNSAHIAPLSLPSNPPS-VGSVCRIMGW 122
Query: 62 GRTRHASSLSSAIPTYVSIS 81
G ++ +P +I+
Sbjct: 123 GTITSPNATLPDVPHCANIN 142
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 122
D+ LI++++ V HI P+ LP VG + GWG
Sbjct: 85 DIMLIRLNRPVRNSAHIAPLSLPSNPPS-VGSVCRIMGWG 123
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDK--DVVFKQHIIPVCLPDQTVKLVGKSATVAG 60
KL + F HP+Y ND+ L+K+ + ++ +P+ ++ G+ G
Sbjct: 69 KLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPISAKSNSIP-PGRVCRAVG 127
Query: 61 WGRT 64
WGRT
Sbjct: 128 WGRT 131
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 8 QSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTR 65
+S HP YS ND+ LIK+++ + + + P+ + G V+GWG T+
Sbjct: 72 KSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPS-AGTKCLVSGWGTTK 128
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 10 FVHPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP 45
HP Y+ P + DVALIK+ + + Q I P+CLP
Sbjct: 287 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 331
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 71 SSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
+ IP + DVALIK+ + + Q I P+CLP
Sbjct: 299 EAGIPEFYDY--DVALIKLKNKLKYGQTIRPICLP 331
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 32.3 bits (72), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 10 FVHPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP 45
HP Y+ P + DVALIK+ + + Q I P+CLP
Sbjct: 295 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 339
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 71 SSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
+ IP + DVALIK+ + + Q I P+CLP
Sbjct: 307 EAGIPEFYDY--DVALIKLKNKLKYGQTIRPICLP 339
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWG 133
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 122
D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 93 DIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWG 133
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 12 HPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP 45
HP Y+ P + DVALIK+ + + Q I P+CLP
Sbjct: 522 HPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 564
Score = 29.6 bits (65), Expect = 0.57, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLP 105
DVALIK+ + + Q I P+CLP
Sbjct: 542 DVALIKLKNKLKYGQTIRPICLP 564
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 32.0 bits (71), Expect = 0.092, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 12 HPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP 45
HP Y+ P + DVALIK+ + + Q I P+CLP
Sbjct: 531 HPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 573
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLP 105
DVALIK+ + + Q I P+CLP
Sbjct: 551 DVALIKLKNKLKYGQTIRPICLP 573
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 32.0 bits (71), Expect = 0.092, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 12 HPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP 45
HP Y+ P + DVALIK+ + + Q I P+CLP
Sbjct: 541 HPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 583
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLP 105
DVALIK+ + + Q I P+CLP
Sbjct: 561 DVALIKLKNKLKYGQTIRPICLP 583
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 10 FVHPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP 45
HP Y+ P + DVALIK+ + + Q I P+CLP
Sbjct: 88 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 132
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 71 SSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
+ IP + DVALIK+ + + Q I P+CLP
Sbjct: 100 EAGIPEFYDY--DVALIKLKNKLKYGQTIRPICLP 132
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWG 133
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWG 133
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWG 133
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWG 133
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK-LVGKSATVAGWG 62
++ +H QY ++ D+AL+K++ V + P+ LP + + ++ V GWG
Sbjct: 74 FGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWG 133
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAS 68
HP Y P +D+ L+++ + + P LP Q V G VAGWG HA
Sbjct: 78 HPDYQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAG 135
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAGHK 130
+I +D+ L+++ + + P LP Q V G VAGWG HAG +
Sbjct: 85 TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
D+A++++ + F+ ++ P LP G ++GWG T +G
Sbjct: 88 DIAVLRLKTPITFRMNVAPASLP-TAPPATGTKCLISGWGNTASSG 132
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 62
VH Y+ ND+A+I++ V I V LP V VG T GWG
Sbjct: 75 VHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVG-VGTVVTPTGWG 125
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 80 ISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 122
ISND+A+I++ V I V LP V VG T GWG
Sbjct: 84 ISNDIAVIRLPVPVTLTAAIATVGLPSTDVG-VGTVVTPTGWG 125
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD--QTVKLVGKSATVAGWGRTRHAS 68
+H +Y ND+ALIKI V I P CLP ++ V GWG +
Sbjct: 89 IHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKEKG 148
Query: 69 SLSSAIPTYVSISNDVALIKID 90
+S PT VALI ++
Sbjct: 149 PRTS--PTLQEAR--VALIDLE 166
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPD--QTVKLVGKSATVAGWGRTRHAGHK 130
ND+ALIKI V I P CLP ++ V GWG + G +
Sbjct: 100 NDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPR 150
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKD----VVFKQHIIPVCLPDQTVKLVG-KSATVAGW 61
++ VH ++ + ND+AL+++ D + +CLP+ ++L ++G+
Sbjct: 93 KKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRAICLPEANLQLPDWTECELSGY 152
Query: 62 GRTRHASSLSS 72
G+ + +S S
Sbjct: 153 GKHKSSSPFYS 163
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 75 PTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSA------TVAGWGRTRHAG 128
P Y D ALIK+ + P+ P T+K+ +A TVAGWG R G
Sbjct: 74 PGYNGTGKDWALIKLAQ---------PINQP--TLKIATTTAYNQGTFTVAGWGANREGG 122
Query: 129 HKER 132
++R
Sbjct: 123 SQQR 126
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 75 PTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSA------TVAGWGRTRHAG 128
P Y D ALIK+ + P+ P T+K+ +A TVAGWG R G
Sbjct: 74 PGYNGTGKDWALIKLAQ---------PINQP--TLKIATTTAYNQGTFTVAGWGANREGG 122
Query: 129 HKER 132
++R
Sbjct: 123 SQQR 126
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 75 PTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSA------TVAGWGRTRHAG 128
P Y D ALIK+ + P+ P T+K+ +A TVAGWG R G
Sbjct: 74 PGYNGTGKDWALIKLAQ---------PINQP--TLKIATTTAYNQGTFTVAGWGANREGG 122
Query: 129 HKER 132
++R
Sbjct: 123 SQQR 126
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 75 PTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSA------TVAGWGRTRHAG 128
P Y D ALIK+ + P+ P T+K+ +A TVAGWG R G
Sbjct: 74 PGYNGTGKDWALIKLAQ---------PINQP--TLKIATTTAYNQGTFTVAGWGANREGG 122
Query: 129 HKER 132
++R
Sbjct: 123 SQQR 126
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 8 QSFVHPQYSPS-----------DFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSA 56
+SF HP ++ S DF +D+ L+++ K + P+ LP + K G
Sbjct: 70 KSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPK-PGSKC 128
Query: 57 TVAGWG 62
+GWG
Sbjct: 129 LASGWG 134
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 74 IPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 122
IP S+D+ L+++ K + P+ LP + K G +GWG
Sbjct: 87 IPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPK-PGSKCLASGWG 134
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L + VHPQ+ D+AL+++++ V + V LP + G V GWG
Sbjct: 72 LPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWG 131
Query: 63 RTRHASSLSSAIP 75
+ L P
Sbjct: 132 DVDNDEPLPPPFP 144
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L + VHPQ+ D+AL+++++ V + V LP + G V GWG
Sbjct: 72 LPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWG 131
Query: 63 RTRHASSLSSAIP 75
+ L P
Sbjct: 132 DVDNDEPLPPPFP 144
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 4 LNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWG 62
L + VHPQ+ D+AL+++++ V + V LP + G V GWG
Sbjct: 72 LPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWG 131
Query: 63 RTRHASSLSSAIP 75
+ L P
Sbjct: 132 DVDNDEPLPPPFP 144
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
K+ + +H Y+ +D+ L+K++K V + V LP + + G AGW
Sbjct: 69 KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGW 128
Query: 62 GRT 64
G+T
Sbjct: 129 GKT 131
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 20 FRNDVALIKIDKDVVFKQHIIPVCLP 45
+ +D+AL+K+ + V H P+CLP
Sbjct: 323 YGDDIALLKLAQKVKMSTHARPICLP 348
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLP 105
+D+AL+K+ + V H P+CLP
Sbjct: 325 DDIALLKLAQKVKMSTHARPICLP 348
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 28.9 bits (63), Expect = 0.88, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 20 FRNDVALIKIDKDVVFKQHIIPVCLP 45
+ +D+AL+K+ + V H P+CLP
Sbjct: 315 YGDDIALLKLAQKVKMSTHARPICLP 340
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLP 105
+D+AL+K+ + V H P+CLP
Sbjct: 317 DDIALLKLAQKVKMSTHARPICLP 340
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKS-ATVAGWGR--T 64
VH +Y ND++L++++ + +PVC P++ L+ ++ ++GW R T
Sbjct: 166 VHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGT 225
Query: 65 RHASSLSS-------------------AIPTYVSISNDVALIKIDKDVVFKQH 98
+SL++ TY S+ A+ +D VV ++H
Sbjct: 226 DLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREH 278
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 78 VSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTRHAG 128
+S ND+AL+K+ V I CLP L V GWGR + G
Sbjct: 88 LSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNG 139
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 11 VHPQYSPSDFRN--DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSAT-VAGWGRTR 65
VH ++ + N D+AL+K+ V I CLP L V GWGR +
Sbjct: 79 VHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQ 136
>pdb|3ESS|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With The 1,8-Naphthalimide Inhibitor
Length = 230
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 53 GKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
G+ TV GW HA ++ S IP N + ID++ V K+ I P
Sbjct: 175 GEDETVIGWDMAIHAVAIPSTIP-----GNAYEELAIDEEAVAKEQSISTKPP 222
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKS-ATVAGWGR--T 64
VH +Y ND++L++++ + +PVC P++ L+ ++ ++GW R T
Sbjct: 125 VHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGT 184
Query: 65 RHASSLSS-------------------AIPTYVSISNDVALIKIDKDVVFKQH 98
+SL++ TY S+ A+ +D VV ++H
Sbjct: 185 DLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCERSSVAAMHWMDGSVVTREH 237
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 7 RQSFVHPQYSPSD-FRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTR 65
++ F P D D+ LIK+D V +HI P+ + VG + GWG+T
Sbjct: 69 KEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPL-SLPSSPPSVGSVCRIMGWGKTI 127
Query: 66 HASSLSSAIPTYVSIS 81
+ +P +I+
Sbjct: 128 PTKEIYPDVPHCANIN 143
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
+ D+ LIK+D V +HI P+ + VG + GWG+T
Sbjct: 82 EVDKDIMLIKLDSSVSNSEHIAPL-SLPSSPPSVGSVCRIMGWGKT 126
>pdb|3KI0|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-D
pdb|3KI1|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-F
pdb|3KI2|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-G
pdb|3KI3|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-H
pdb|3KI4|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-P
pdb|3KI5|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-M
pdb|3KI6|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-L
pdb|3KI7|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor Gp-I
pdb|3NY6|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With Inhibitor V30
Length = 211
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 53 GKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
G+ TV GW HA ++ S IP N + ID++ V K+ I P
Sbjct: 156 GEDETVIGWDMAIHAVAIPSTIP-----GNAYEELAIDEEAVAKEQSISTKPP 203
>pdb|2Q6M|A Chain A, Catalytic Fragment Of Cholix Toxin From Vibrio Cholerae In
Complex With The Pj34 Inhibitor
Length = 212
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 53 GKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
G+ TV GW HA ++ S IP N + ID++ V K+ I P
Sbjct: 156 GEDETVIGWDMAIHAVAIPSTIP-----GNAYEELAIDEEAVAKEQSISTKPP 203
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 2 FKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL 51
K R+ VH +Y D++L ++ V + + VCLPD + +
Sbjct: 65 MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEF 114
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 83 DVALIKIDKDVVFKQHIIPVCLPDQTVKLV-GKSATVAGWGRTRHAGHKER 132
D++L ++ V + + VCLPD + + G V G+G ++ G+ +
Sbjct: 86 DISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQN 136
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 5 NTRQSFVHPQYSPSD-FRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
N ++ F+ P + ++ D+ LIK+DK + +HI P+ + VG + GWG
Sbjct: 67 NPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPL-SLPSSPPSVGSVCRIMGWGS 125
Query: 64 TRHASSLSSAIPTYVSIS 81
+P +I+
Sbjct: 126 ITPVKETFPDVPYCANIN 143
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 5 NTRQSFVHPQYSPSD-FRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGR 63
N ++ F+ P + ++ D+ LIK+DK + +HI P+ + VG + GWG
Sbjct: 67 NPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPL-SLPSSPPSVGSVCRIMGWGS 125
Query: 64 TRHASSLSSAIPTYVSIS 81
+P +I+
Sbjct: 126 ITPVKETFPDVPYCANIN 143
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 53 GKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLP 105
G+ TV GW HA ++ S IP N + ID++ V K+ I P
Sbjct: 586 GEDETVIGWDMAIHAVAIPSTIP-----GNAYEELAIDEEAVAKEQSISTKPP 633
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAS 68
HP P +D+ L+++ + + P LP Q V G VAGWG HA
Sbjct: 78 HPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAG 135
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAGHK 130
+I +D+ L+++ + + P LP Q V G VAGWG HAG +
Sbjct: 85 TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAS 68
HP P +D+ L+++ + + P LP Q V G VAGWG HA
Sbjct: 78 HPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAG 135
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAGHK 130
+I +D+ L+++ + + P LP Q V G VAGWG HAG +
Sbjct: 85 TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAS 68
HP P +D+ L+++ + + P LP Q V G VAGWG HA
Sbjct: 78 HPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAG 135
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAGHK 130
+I +D+ L+++ + + P LP Q V G VAGWG HAG +
Sbjct: 85 TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 81 SNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 124
SND+ L+K+ +H+ + + +T G V GWG T
Sbjct: 90 SNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGAT 133
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 22 NDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRT 64
ND+ L+K+ +H+ + + +T G V GWG T
Sbjct: 91 NDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGAT 133
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAS 68
HP P +D+ L+++ + + P LP Q V G VAGWG HA
Sbjct: 85 HPDSQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAG 142
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVK---LVGKSATVAGWGRTRHAGHK 130
+I +D+ L+++ + + P LP Q V G VAGWG HAG +
Sbjct: 92 TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 144
>pdb|4F7A|A Chain A, Crystal Structure Of A Susd Homolog (Bvu_2203) From
Bacteroides Vulgatus Atcc 8482 At 1.85 A Resolution
Length = 511
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 46 DQTVKLVGKS-----ATVAGWGRTRHASSLSSAIPTY 77
D+ +++ GK A VAGWG T ++++S + Y
Sbjct: 238 DENIQISGKGYQNPLAGVAGWGETYXGATIASVLNGY 274
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 5 NTRQSFVHPQYSPSD-FRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 62
N ++ F+ P + D+ LIK+D V +HI+P+ + VG + GWG
Sbjct: 67 NPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPL-SLPSSPPSVGSVCHIMGWG 124
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL---VGKSATVAGWGRTRHAS 68
HP P +D+ L+++ + + P LP Q V G VAGWG HA
Sbjct: 78 HPDSRPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVEPGTLCDVAGWGIVSHAG 135
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL---VGKSATVAGWGRTRHAGHK 130
+I +D+ L+++ + + P LP Q V G VAGWG HAG +
Sbjct: 85 TIDHDLLLLQLSEKATLGPAVRP--LPWQRVDRDVEPGTLCDVAGWGIVSHAGRR 137
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 2 FKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVV--FKQHI--IPVCLPDQTVKLVGKSAT 57
FK+N + +P+ ++ + LI D V+ K H+ V L D + + GK
Sbjct: 296 FKINVKAPEHWTAENPTLYKYQLDLIGSDGSVIQSIKHHVGFRQVELKDGNITVNGKDIL 355
Query: 58 VAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQH 98
G R H A+P + + + + K + + V H
Sbjct: 356 FRGVNRHDHHPRFGRAVPLDFVVRDLILMKKFNINAVRNSH 396
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKD---VVFKQHII-PVCLPDQTVKLVG-KSAT 57
K + VH ++ + ND+AL+++ D + ++ VCLP ++L
Sbjct: 76 KFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECE 135
Query: 58 VAGWGRTRHASSLSS 72
++G+G+ S S
Sbjct: 136 LSGYGKHEALSPFYS 150
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKD---VVFKQHII-PVCLPDQTVKLVG-KSAT 57
K + VH ++ + ND+AL+++ D + ++ VCLP ++L
Sbjct: 89 KFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECE 148
Query: 58 VAGWGRTRHASSLSS 72
++G+G+ S S
Sbjct: 149 LSGYGKHEALSPFYS 163
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 23 DVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLSSAIPTYVSIS 81
D+ LI++D V +HI P + VG + GWGR +P V+I+
Sbjct: 88 DIMLIRLDSPVKNSKHIAPF-SLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNIN 145
>pdb|2KHV|A Chain A, Solution Nmr Structure Of Protein Nmul_a0922 From
Nitrosospira Multiformis. Northeast Structural Genomics
Consortium Target Nmr38b
Length = 106
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 16/81 (19%)
Query: 59 AGWGRTRHASSLSSAIPTY-------VSISN-DVALIKIDKDVVFKQHIIPVCLPDQTVK 110
+ W T+HA ++ I TY +S+ + D LI D +++Q P+ +
Sbjct: 16 SSWKNTKHADQWTNTIKTYCGPVIGPLSVQDVDTKLIMKVLDPIWEQK------PETASR 69
Query: 111 LVGKSATVAGWGRTRHAGHKE 131
L G+ +V W R G++E
Sbjct: 70 LRGRIESVLDWATVR--GYRE 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,617,421
Number of Sequences: 62578
Number of extensions: 125030
Number of successful extensions: 958
Number of sequences better than 100.0: 302
Number of HSP's better than 100.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 579
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)